RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17030
         (108 letters)



>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain
          A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 115

 Score = 23.5 bits (50), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 66 EMAKVEFARREALSRISSTAVTPG 89
          EM KV  A R+++ RI +  + PG
Sbjct: 1  EMGKVYRADRKSVQRIKARDIVPG 24


>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
           maritima [TaxId: 2336]}
          Length = 194

 Score = 23.8 bits (51), Expect = 5.4
 Identities = 13/65 (20%), Positives = 17/65 (26%)

Query: 33  QTILLIVALEHIMFAVRFIISCVIPDLPDWVATEMAKVEFARREALSRISSTAVTPGLAD 92
           Q +    A   I               P+       + E   RE L       +T G   
Sbjct: 37  QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGG 96

Query: 93  NGGTG 97
             GTG
Sbjct: 97  GTGTG 101


>d1x6za1 d.24.1.1 (A:25-144) Type IV Pilin Pak {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 120

 Score = 23.1 bits (49), Expect = 8.4
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 65 TEMAKVEFARREALSRISS--TAVTPGLADNG 94
          TE A+ E A   AL+ ++   T V   L+   
Sbjct: 2  TEFARSEGA--SALASVNPLKTTVEEALSRGW 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,333
Number of extensions: 14295
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)