BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17031
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 25/204 (12%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW 288
W GN CK V ++ST+ L A+S+DRY AI +P+ + +A+ + W
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIW 249
Query: 289 LISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQW--QLYMSLVALALFVIPAVXXXX-- 344
++ ++ +P+A++ ++ +C +E P + ++ + L F++P +
Sbjct: 250 ALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCY 309
Query: 345 -----XXXXXXXXXWAKSKLYTF--------------VLCWSPYIVFDLLQVYGYIPRTQ 385
++ K V CW+P VF L Q G P ++
Sbjct: 310 SLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSE 369
Query: 386 NYIAVATLIQSLAPLNSAANPIIY 409
+A+ +L +NS NPI+Y
Sbjct: 370 TAVAILRFCTALGYVNSCLNPILY 393
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 109 VLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVL---TDIVWRSSVTWKAGNT 165
+LGN V++ + K ++ N +I +LA+AD V +L++ TDI+ W GN
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLG---FWPFGNA 195
Query: 166 ACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
CK V ++ST+ L A+S+DRY AI +P+
Sbjct: 196 LCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVW--RSSVTWK 161
+F+ ++GN VI + + K RS + + +HL+VADL L V+T W + W
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL----LFVITLPFWAVDAVANWY 113
Query: 162 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
GN CK V V YSS ++L +S+DRY AI + N
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN 153
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 230 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWL------ 283
W GN CK V V YSS ++L +S+DRY AI + N S R + L
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN---SQRPRKLLAEKVVY 167
Query: 284 VGIAWLISFILSIP 297
VG+ W+ + +L+IP
Sbjct: 168 VGV-WIPALLLTIP 180
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVW--RSSVTWK 161
+F+ ++GN VI + + K RS + + +HL+VADL L V+T W + W
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL----LFVITLPFWAVDAVANWY 113
Query: 162 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
GN CK V V YSS ++L +S+DRY AI + N
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN 153
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 230 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWL------ 283
W GN CK V V YSS ++L +S+DRY AI + N S R + L
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN---SQRPRKLLAEKVVY 167
Query: 284 VGIAWLISFILSIP 297
VG+ W+ + +L+IP
Sbjct: 168 VGV-WIPALLLTIP 180
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVW--RSSVTWK 161
+F+ ++GN VI + + K RS + + +HL+VADL L V+T W + W
Sbjct: 58 IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADL----LFVITLPFWAVDAVANWY 113
Query: 162 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
GN CK V V YSS ++L +S+DRY AI + N
Sbjct: 114 FGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN 153
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 230 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWL------ 283
W GN CK V V YSS ++L +S+DRY AI + N S R + L
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN---SQRPRKLLAEKVVY 167
Query: 284 VGIAWLISFILSIP 297
VG+ W+ + +L+IP
Sbjct: 168 VGV-WIPALLLTIP 180
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 75 KSQQDAMLTWSPIRTLTKLNTEQFV-ILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFI 133
K DAM P+ + + ++ + A+ +L +LGN V + + ++ N+F+
Sbjct: 3 KDDDDAM--GQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFV 60
Query: 134 MHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRY 193
+ LA AD+ VGVL++ I S + A C + V+T SS + L+A++IDRY
Sbjct: 61 VSLAAADIAVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRY 118
Query: 194 YAIKYPMNFCG 204
AI+ P+ + G
Sbjct: 119 IAIRIPLRYNG 129
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+T SS + L+A++IDRY AI+ P
Sbjct: 67 DIAVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIP 124
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSI-----------PIAVLFHVR-LVQGTSQCWIE 316
+ + G + RA+ ++ I W++SF + + P H + +G C E
Sbjct: 125 LRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFE 184
Query: 317 FEKPWQWQLYMSLVALAL 334
P + +Y + A L
Sbjct: 185 DVVPMNYMVYFNFFACVL 202
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAG 163
L ++ ++GN VI K + ++ N+F++ LA ADL +GV+S+ + W G
Sbjct: 22 LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALG 81
Query: 164 NTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
N AC + V + +S L+ +S DRY++I P+ +
Sbjct: 82 NLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTY 120
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL +GV+S+ + W GN AC + V + +S L+ +S DRY++I P
Sbjct: 58 DLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRP 117
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTS----QCWIEF 317
+ + + +RA ++G+AW+ISF+L P A+LF V + +C+I+F
Sbjct: 118 LTYRAKRTTKRAGVMIGLAWVISFVLWAP-AILFWQYFVGKRTVPPGECFIQF 169
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 103 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162
A+ +L +LGN V + + ++ N+F++ LA AD+ VGVL++ I S + A
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI--STGFCA 72
Query: 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG 204
C + V+T SS + L+A++IDRY AI+ P+ + G
Sbjct: 73 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNG 114
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+T SS + L+A++IDRY AI+ P
Sbjct: 52 DIAVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIP 109
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSI 296
+ + G + RA+ ++ I W++SF + +
Sbjct: 110 LRYNGLVTGTRAKGIIAICWVLSFAIGL 137
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 230 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIA 287
TW GN CK+V ++S + L +S+DRY A+ +P+ + R A+ +
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN 140
Query: 288 WLISFILSIPIAVLFHVRLVQGTSQCWIEFEKP-WQWQLYMSL-VALALFVIP 338
W++S + +P+ + + QG+ C + F P W W+ + + V + F++P
Sbjct: 141 WILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMP 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 109 VLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV-----TWKAG 163
+ GN V++ + K ++ N +I +LA+AD ++ T + SV TW G
Sbjct: 32 LFGNFLVMYVIVRYTKMKTATNIYIFNLALAD------ALATSTLPFQSVNYLMGTWPFG 85
Query: 164 NTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
N CK+V ++S + L +S+DRY A+ +P+
Sbjct: 86 NILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV 122
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 103 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162
A+ +L +LGN V + + ++ N+F++ LA AD+ VGVL++ I S + A
Sbjct: 40 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI--STGFCA 97
Query: 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG 204
C + V+T SS + L+A++IDRY AI+ P+ + G
Sbjct: 98 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNG 139
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+T SS + L+A++IDRY AI+ P
Sbjct: 77 DIAVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIP 134
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSI 296
+ + G + RA+ ++ I W++SF + +
Sbjct: 135 LRYNGLVTGTRAKGIIAICWVLSFAIGL 162
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 103 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162
A+ +L +LGN V + + ++ N+F++ A AD+ VGVL++ I S + A
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI--STGFCA 72
Query: 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG 204
C + V+T SS + L+A++IDRY AI+ P+ + G
Sbjct: 73 ACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNG 114
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+T SS + L+A++IDRY AI+ P
Sbjct: 52 DILVGVLAIPFAIAI--STGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIP 109
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSI 296
+ + G + RA+ ++ I W++SF + +
Sbjct: 110 LRYNGLVTGTRAKGIIAICWVLSFAIGL 137
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 103 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162
A+ +L +LGN V + + ++ N+F++ LA AD+ VGVL++ I S + A
Sbjct: 15 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITI--STGFCA 72
Query: 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG 204
C + V+ SS + L+A++IDRY AI P+ + G
Sbjct: 73 ACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNG 114
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+ SS + L+A++IDRY AI P
Sbjct: 52 DILVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIP 109
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSI 296
+ + G + RA ++ I W++SF + +
Sbjct: 110 LRYNGLVTGTRAAGIIAICWVLSFAIGL 137
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 9/101 (8%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV----T 159
+F++ ++GNS V+F + K ++ N +I +LA+AD V T + ++S+V +
Sbjct: 32 VFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALV-----TTTMPFQSTVYLMNS 86
Query: 160 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
W G+ CK+V ++S + L +S+DRY A+ +P+
Sbjct: 87 WPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV 127
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 185 LVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSV----TWKAGNTACKV 240
LV I RY +K N YI +L + V T + ++S+V +W G+ CK+
Sbjct: 42 LVMFVIIRYTKMKTATNI-----YIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKI 96
Query: 241 VRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPI 298
V ++S + L +S+DRY A+ +P+ + +A+ + WL+S + I
Sbjct: 97 VLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISA 156
Query: 299 AVLFHVRLVQGTS--QCWIEF---EKPWQWQLYMSL-VALALFVIP 338
VL ++ + +C ++F + W W L+M + V + FVIP
Sbjct: 157 IVLGGTKVREDVDVIECSLQFPDDDYSW-WDLFMKICVFIFAFVIP 201
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 365 CWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 409
CW+P +F L++ G + ++ +L NS+ NPI+Y
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILY 452
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V + TW GN C+
Sbjct: 24 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTS 83
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 84 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 143
Query: 301 LFHVRLVQGTSQCWIEFEKPWQW---QLYMSLVALALFVIPAVXXXXXXXXXXXXXWAKS 357
++ Q C+ E E + Q Y ++ F +P V AK
Sbjct: 144 HWYRATHQEAINCYAE-ETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQE--AKR 200
Query: 358 KLY---------------------TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQ 395
+L TF LCW P+ + +++ V + R + YI L+
Sbjct: 201 QLQKIDKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLN 256
Query: 396 SLAPLNSAANPIIYC 410
+ +NS NP+IYC
Sbjct: 257 WIGYVNSGFNPLIYC 271
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 100 ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
I+ +L +L IV GN VI + + ++ N+FI LA ADL +G+ V +
Sbjct: 10 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 69
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
TW GN C+ + +S L +++DRY+AI P +
Sbjct: 70 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 113
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 98 FVILWA--LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWR 155
F++L A L ++ ++GN V+ ++K ++ N+F+ LA ADL +GV S+ ++
Sbjct: 25 FIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYT 84
Query: 156 SSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF-CGSCKYIRDLCV 214
W G C + VV+ +S L+ +S DRY+ + P+ + + + +
Sbjct: 85 VIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMI 144
Query: 215 GVLSVLTDIVWRSSVT-WK-------AGNTACKVVRYSQAVVTYSS 252
VL+ I+W ++ W+ + C + +S A VT+ +
Sbjct: 145 AAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGT 190
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL +GV S+ ++ W G C + VV+ +S L+ +S DRY+ + P
Sbjct: 69 DLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKP 128
Query: 271 MNFC--GSWRRARWLVGIAWLISFILSIPIAVLF-----HVRLVQGTSQCWIEF 317
+ + + + A ++ AW++SFIL P A+LF VR V+ +C+I+F
Sbjct: 129 LTYPVKRTTKMAGMMIAAAWVLSFILWAP-AILFWQFIVGVRTVED-GECYIQF 180
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSS----VTWKAGNTACK 239
VLV I RY +K N YI +L + + + ++S+ TW G CK
Sbjct: 33 VLVMFGIVRYTKLKTATNI-----YIFNLALADALATSTLPFQSAKYLMETWPFGELLCK 87
Query: 240 VVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIP 297
V ++S + L +S+DRY A+ +P+ + +A+ + W+++ + +P
Sbjct: 88 AVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVP 147
Query: 298 IAVLFHVRLVQGTSQCWIEFEKP-WQWQLYMSL-VALALFVIP 338
I V+ + G C ++F P W W + V L FV+P
Sbjct: 148 IMVMAVTQPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVP 190
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 109 VLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAD-LCVGVLSVLTDIVWRSSVTWKAGNTAC 167
+LGN V+F + K ++ N +I +LA+AD L L + TW G C
Sbjct: 29 LLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLME--TWPFGELLC 86
Query: 168 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
K V ++S + L +S+DRY A+ +P+
Sbjct: 87 KAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK 120
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 106 ILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNT 165
+LIV GN VI + + ++ N FI LA ADL VG+L V TW G+
Sbjct: 23 LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSF 82
Query: 166 ACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
C++ + +S L ++IDRY AI P +
Sbjct: 83 LCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRY 119
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 40/234 (17%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL VG+L V TW G+ C++ + +S L ++IDRY AI P
Sbjct: 57 DLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSP 116
Query: 271 MNFCGSWRRARWLVGIA--WLISFILSIPIAVLFH---------VRLVQGTSQCWIEFEK 319
+ RAR V I W IS ++S + ++ H ++ Q C +F
Sbjct: 117 FRYQSLMTRARAKVIICTVWAISALVSF-LPIMMHWWRDEDPQALKCYQDPGCC--DFVT 173
Query: 320 PWQWQLYMSLVA------LALFVIPAVXXXXXXXXXXXXXWAKSK--------------- 358
+ + S+++ + +FV V +K K
Sbjct: 174 NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLG 233
Query: 359 --LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
+ F LCW P+ + +++ V+ +++ VA L NSA NPIIYC
Sbjct: 234 IIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVA--FNWLGYANSAMNPIIYC 284
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 106 ILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNT 165
+LIV GN VI + + ++ N FI LA ADL VG+L V TW G+
Sbjct: 23 LLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSF 82
Query: 166 ACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
C++ + +S L ++IDRY AI P +
Sbjct: 83 LCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRY 119
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 91/236 (38%), Gaps = 42/236 (17%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL VG+L V TW G+ C++ + +S L ++IDRY AI P
Sbjct: 57 DLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSP 116
Query: 271 MNFCGSWRRARWLVGIA--WLISFILSIPIAVLFH---------VRLVQGTSQCWIEFEK 319
+ RAR V I W IS ++S + ++ H ++ Q C +F
Sbjct: 117 FRYQSLMTRARAKVIICTVWAISALVSF-LPIMMHWWRDEDPQALKCYQDPGCC--DFVT 173
Query: 320 PWQWQLYMSLVA------LALFVIPAVXXXXXXXXXXXXXWAKSK--------------- 358
+ + S+++ + +FV V +K K
Sbjct: 174 NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKT 233
Query: 359 ----LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
+ F LCW P+ + +++ V+ +++ VA L NSA NPIIYC
Sbjct: 234 LGIIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVA--FNWLGYANSAMNPIIYC 286
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 41/222 (18%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLI 290
W G CK + ++S Y + A++ DRY AI +P+ S + ++ + W++
Sbjct: 98 WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVL 157
Query: 291 SFILSIPIAVLFHVRLVQGTSQCWIEF-EKPWQ--WQLYMSLVALALFVIPAVXXXXXXX 347
+ +L+ P + C IE+ E P + ++Y V + ++ +P +
Sbjct: 158 ALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYT 217
Query: 348 XXXXXXWA------KSKLY-------------------TFVLCWSPYIVFDLLQVYG--- 379
WA S Y TF +CW P+ +F LL
Sbjct: 218 VVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDL 277
Query: 380 YIPR--TQNYIAVATLIQSLAPLNSAANPIIYCI----FRTG 415
Y+ + Q Y+A+ L S ++ NPIIYC FR G
Sbjct: 278 YLKKFIQQVYLAIMWLAMS----STMYNPIIYCCLNDRFRLG 315
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 124 KRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTY 183
+ R+ N+F+++LA A+ + + + + + W G CK + ++S Y
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIY 121
Query: 184 VLVALSIDRYYAIKYPMN 201
+ A++ DRY AI +P+
Sbjct: 122 SMTAVAFDRYMAIIHPLQ 139
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 115 VIFTLKFGVKRRSRMNFFIMHLAVAD-LCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYS 173
V+F LK VK+ + + +++HLA AD L V VL + S W+ G+ C+ V +
Sbjct: 43 VVFILKMKVKKPAVV--YMLHLATADVLFVSVLPFKISYYFSGS-DWQFGSELCRFVTAA 99
Query: 174 QAVVTYSSTYVLVALSIDRYYAIKYPMN 201
Y+S ++ +SIDR+ A+ YPM
Sbjct: 100 FYCNMYASILLMTVISIDRFLAVVYPMQ 127
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 227 SSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRR------- 279
S W+ G+ C+ V + Y+S ++ +SIDR+ A+ YPM SWR
Sbjct: 82 SGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSL-SWRTLGRASFT 140
Query: 280 --ARWLVGIAWLISFIL 294
A W + IA ++ +L
Sbjct: 141 CLAIWALAIAGVVPLLL 157
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+++ + + IV GN VI + + ++ N+FI LA ADL +G+ V +
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 246
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
TW GN C+ + +S L +++DRY+AI P +
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 290
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V + TW GN C+
Sbjct: 201 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTS 260
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 261 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 320
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 321 HWYRATHQEAINCYAE 336
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 430 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 476
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 85 SPIRTLTKLNTEQFV----ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 139
+P +T+ E +V I+ +L +L IV GN VI + + ++ N+FI LA A
Sbjct: 20 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 79
Query: 140 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199
DL +G+ V W GN C+ + +S L +++DRY+AI P
Sbjct: 80 DLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 139
Query: 200 MNF 202
+
Sbjct: 140 FKY 142
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 282 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 328
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 53 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 112
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 113 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 172
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 173 HWYRATHQEAINCYAE 188
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 85 SPIRTLTKLNTEQFV----ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 139
+P +T+ E +V I+ +L +L IV GN VI + + ++ N+FI LA A
Sbjct: 19 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 78
Query: 140 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199
DL +G+ V W GN C+ + +S L +++DRY+AI P
Sbjct: 79 DLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 138
Query: 200 MNF 202
+
Sbjct: 139 FKY 141
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 281 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 327
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 52 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 111
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 112 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 171
Query: 301 LFHVRLVQGTSQCW 314
++ Q C+
Sbjct: 172 HWYRATHQEAINCY 185
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 85 SPIRTLTKLNTEQFV----ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 139
+P +T+ E +V I+ +L +L IV GN VI + + ++ N+FI LA A
Sbjct: 27 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 86
Query: 140 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199
DL +G+ V W GN C+ + +S + L +++DRY+AI P
Sbjct: 87 DLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSP 146
Query: 200 MNF 202
+
Sbjct: 147 FKY 149
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 417 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 463
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 60 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 119
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S + L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 120 IDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 179
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 180 HWYRATHQEAINCYAE 195
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 98 FVILWALFILIVLG-NSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRS 156
V++ + L+ +G N V++ ++ K + N +I+ L+VADL VG + + +I++
Sbjct: 11 LVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLL 70
Query: 157 SVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
W G C V + +S + + L IDRY +++ P+ +
Sbjct: 71 MSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRY 116
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 33/224 (14%)
Query: 209 IRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIK 268
+ DL VG + + +I++ W G C V + +S + + L IDRY +++
Sbjct: 52 VADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQ 111
Query: 269 YPMNFCGSWRRARWLVGI--AWLISFILSIPIAVLFHVRLVQGTS-----QCWIEF-EKP 320
P+ + + R I AW +SF+ IPI H +Q TS +C +F +
Sbjct: 112 QPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNH--FMQQTSVRREDKCETDFYDVT 169
Query: 321 WQWQLYMSLVALALFVIPAVXXXXXXXXXXXXXWAKSKLYTFVLCWSPYIVFDLLQVYGY 380
W + + A+ F +P + W +K+Y V +F++L++
Sbjct: 170 W----FKVMTAIINFYLPTL----------LMLWFYAKIYKAVRQHCN--IFEMLRIDEG 213
Query: 381 I-----PRTQNY--IAVATLIQSLAPLNSAANPIIYCIFRTGNN 417
+ T+ Y I + L+ LN+A + + I R N
Sbjct: 214 LRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 257
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+++ + + IV GN VI + + ++ N+FI LA ADL +G+ V
Sbjct: 15 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK 74
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
W GN C+ + +S L +++DRY+AI P +
Sbjct: 75 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 118
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 258 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 304
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 29 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 88
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 89 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 148
Query: 301 LFHVRLVQGTSQCW 314
++ Q C+
Sbjct: 149 HWYRATHQEAINCY 162
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 85 SPIRTLTKLNTEQFV----ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 139
+P +T+ E +V I+ +L +L IV GN VI + + ++ N+FI LA A
Sbjct: 26 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 85
Query: 140 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199
DL +G+ V W GN C+ + +S L +++DRY+AI P
Sbjct: 86 DLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 145
Query: 200 MNF 202
+
Sbjct: 146 FKY 148
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 462
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 59 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 118
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 119 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 178
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 179 HWYRATHQEAINCYAE 194
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 85 SPIRTLTKLNTEQFV----ILWALFIL-IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 139
+P +T+ E +V I+ +L +L IV GN VI + + ++ N+FI LA A
Sbjct: 27 APDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 86
Query: 140 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199
DL +G+ V W GN C+ + +S L +++DRY+AI P
Sbjct: 87 DLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 146
Query: 200 MNF 202
+
Sbjct: 147 FKY 149
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 417 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 463
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 60 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTS 119
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 120 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 179
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 180 HWYRATHQEAINCYAE 195
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 95
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 96 LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 145
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 107 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 218
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 94
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 95 LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 144
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 106 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 165
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 166 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 217
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 95
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 96 LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 145
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 107 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 218
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 95
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 96 LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 145
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 107 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 218
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 36 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 94
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 95 LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS 144
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 106 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 165
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 166 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 217
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 97 QFVILWA-LFILIVLGNSAVIFTLKFGV---KRRSRMNFFIMHLAVADLCVGVLSVLTDI 152
QF +L A +F+LI+LG TL V K R+ +N+ +++LAVADL + V T
Sbjct: 37 QFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFM-VFGGFTTT 95
Query: 153 VWRSSVTWKA-GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
++ S + G T C + + + + + LV L+I+RY + PM+
Sbjct: 96 LYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS 145
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCGSWRRARWLVGIAWLISF 292
G T C + + + + + LV L+I+RY + PM NF A V W+++
Sbjct: 107 GPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166
Query: 293 ILSIPIAVLFHVRLVQGTS-QCWIEFEKPWQ------WQLYMSLVALALFVIPAV 340
+ P V + + +G C I++ P + + +YM +V F+IP +
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVH---FIIPLI 218
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+++ + + IV GN VI + + ++ N+FI LA ADL +G+ V
Sbjct: 14 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMK 73
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
W GN C+ + +S L +++DRY+AI P +
Sbjct: 74 MWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKY 117
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 361 TFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 385 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 431
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
VLV +I ++ ++ N+ + DL +G+ V W GN C+
Sbjct: 28 VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCEFWTS 87
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILS-IPIAV 300
+ +S L +++DRY+AI P + + +AR ++ + W++S + S +PI +
Sbjct: 88 IDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 147
Query: 301 LFHVRLVQGTSQCWIE 316
++ Q C+ E
Sbjct: 148 HWYRATHQEAINCYAE 163
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 103 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWR--SSVTW 160
AL + IV GN V + ++ N+ ++ LAVADL V L V+ +V+ + W
Sbjct: 47 ALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATL-VMPWVVYLEVTGGVW 105
Query: 161 KAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
C V ++ +S + L A+SIDRY A+ P+++
Sbjct: 106 NFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHY 147
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF-----CGSWRRARWLVG 285
W C V ++ +S + L A+SIDRY A+ P+++ S RR ++
Sbjct: 105 WNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT 164
Query: 286 IAWLISFILSIPIAVLFH 303
W+++F +S P+ F+
Sbjct: 165 AVWVLAFAVSCPLLFGFN 182
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 34/216 (15%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIA-WL 289
W G CKVV + V YS +L +S+DRY AI + R V + W
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWG 134
Query: 290 ISFILSIPIAVLFHVRLVQGTSQCWIEF--EKPWQWQLYMSLVA------LALFVIPAVX 341
+S LS+P + +S E +W++ + ++ + LFV+
Sbjct: 135 LSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCY 194
Query: 342 XXXXXXXXXXXXWAKSK--------LYTFVLCWSPYIVFDLLQVYGYIPRTQ-------- 385
K + + F+LCW PY +L+ + + RTQ
Sbjct: 195 GFTLRTLFKAHMGQKHRAMRVIFAVVLIFLLCWLPY---NLVLLADTLMRTQVIQESCER 251
Query: 386 -NYIAVA-TLIQSLAPLNSAANPIIYCI----FRTG 415
N I A + L L+S NPIIY FR G
Sbjct: 252 RNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG 287
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 93 LNTEQFVILWAL-FILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTD 151
LN +I +AL F+L +LGNS V+ + + RS + ++++LA+AD +L LT
Sbjct: 9 LNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALAD----LLFALTL 64
Query: 152 IVWRSSVT--WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAI 196
+W +S W G CKVV + V YS +L +S+DRY AI
Sbjct: 65 PIWAASKVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAI 111
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 126 RSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVT-WKAGNTACKVVRYSQAVVTYSSTYV 184
++ N FI++LA +D +++ + + W G ACKV + + + S
Sbjct: 65 QTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMT 124
Query: 185 LVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAG 234
+ +SIDRY I PM + R ++ VW SV W G
Sbjct: 125 MAMISIDRYNVIGRPMAASKKMSHRRAF------IMIIFVWLWSVLWAIG 168
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW 288
W G ACKV + + + S + +SIDRY I PM S RRA ++ W
Sbjct: 100 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 159
Query: 289 LISFILSI 296
L S + +I
Sbjct: 160 LWSVLWAI 167
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 362 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 411
F+L WSPY V LL +G + Y A L A ++ NP+IY +
Sbjct: 269 FLLSWSPYAVVALLAQFGPLEWVTPY--AAQLPVMFAKASAIHNPMIYSV 316
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 126 RSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVT-WKAGNTACKVVRYSQAVVTYSSTYV 184
++ N FI++LA +D +++ + + W G ACKV + + + S
Sbjct: 66 QTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMT 125
Query: 185 LVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAG 234
+ +SIDRY I PM + R ++ VW SV W G
Sbjct: 126 MAMISIDRYNVIGRPMAASKKMSHRRAF------IMIIFVWLWSVLWAIG 169
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW 288
W G ACKV + + + S + +SIDRY I PM S RRA ++ W
Sbjct: 101 WIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVW 160
Query: 289 LISFILSI 296
L S + +I
Sbjct: 161 LWSVLWAI 168
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 362 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 411
F+L WSPY V LL +G + Y A L A ++ NP+IY +
Sbjct: 270 FLLSWSPYAVVALLAQFGPLEWVTPY--AAQLPVMFAKASAIHNPMIYSV 317
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW 288
W G+ C+ + + TY++ + +LS+ RY AI +P S R + + W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 289 LISFILSIPI 298
L S +L+IP+
Sbjct: 163 LASALLAIPM 172
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 76 SQQDAMLTWSPIRTLTKLNTEQFV--ILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFI 133
S+ D S + T + ++ V I ALF++ +GNS +FTL +S +
Sbjct: 12 SESDTAGPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVH 71
Query: 134 MHLAVADLCVGVLSV------LTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVA 187
HL L ++ + L + +W W G+ C+ + + TY++ + +
Sbjct: 72 YHLGSLALSDLLILLLAMPVELYNFIWVHH-PWAFGDAGCRGYYFLRDACTYATALNVAS 130
Query: 188 LSIDRYYAIKYP 199
LS+ RY AI +P
Sbjct: 131 LSVARYLAICHP 142
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 359 LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 411
L F+ CW+P + LL V G +T + + A LA LNS NPIIY +
Sbjct: 427 LSVFIACWAPLFILLLLDV-GCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTL 478
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 108 IVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTAC 167
I+L N V+ T+ K M +FI +LA++DL GV + +++ + T+K
Sbjct: 77 IILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGV-AYTANLLLSGATTYKLTPAQW 135
Query: 168 KVVRYSQAVVTYSSTYVLVALSIDRY 193
+ S V +S + L+A++I+RY
Sbjct: 136 FLREGSMFVALSASVFSLLAIAIERY 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,597,613
Number of Sequences: 62578
Number of extensions: 360709
Number of successful extensions: 860
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 141
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)