Query psy17031
Match_columns 419
No_of_seqs 226 out of 2367
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 20:04:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 4.1E-38 8.9E-43 298.3 13.3 261 87-418 28-327 (423)
2 PHA03234 DNA packaging protein 100.0 8.1E-36 1.7E-40 291.5 14.9 257 90-419 28-309 (338)
3 PHA02834 chemokine receptor-li 100.0 5.8E-33 1.3E-37 270.6 16.3 254 92-419 26-302 (323)
4 PHA03235 DNA packaging protein 100.0 8.2E-33 1.8E-37 276.3 15.4 258 89-419 27-316 (409)
5 KOG4220|consensus 100.0 1.7E-33 3.8E-38 266.1 3.7 191 96-358 32-225 (503)
6 PHA02638 CC chemokine receptor 100.0 4.6E-31 9.9E-36 264.7 16.4 253 93-419 97-390 (417)
7 PHA03087 G protein-coupled che 100.0 1.2E-29 2.6E-34 248.6 18.2 262 85-419 31-316 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 2.2E-27 4.7E-32 220.9 10.6 226 111-409 1-257 (257)
9 KOG2087|consensus 99.9 5.5E-22 1.2E-26 186.9 8.6 258 94-419 24-299 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.7 2.4E-16 5.2E-21 148.5 9.7 237 106-419 2-252 (257)
11 PHA03234 DNA packaging protein 99.6 3.3E-17 7.2E-22 160.4 0.2 200 5-301 37-256 (338)
12 PHA03235 DNA packaging protein 99.5 3.6E-14 7.8E-19 142.2 4.3 61 163-223 101-161 (409)
13 PF10324 7TM_GPCR_Srw: Serpent 99.4 3.9E-13 8.4E-18 130.8 9.1 254 104-419 6-310 (318)
14 PHA02638 CC chemokine receptor 99.4 2.8E-14 6.1E-19 143.5 -0.4 137 165-301 166-332 (417)
15 PHA02834 chemokine receptor-li 99.4 1.5E-14 3.1E-19 141.2 -3.8 123 3-222 31-153 (323)
16 PHA03087 G protein-coupled che 99.3 4.1E-12 9E-17 124.5 9.3 122 4-221 44-166 (335)
17 PF10328 7TM_GPCR_Srx: Serpent 99.0 9.1E-10 2E-14 104.9 8.6 126 104-300 3-131 (274)
18 KOG2087|consensus 98.9 4.9E-09 1.1E-13 99.8 9.6 130 5-221 29-159 (363)
19 PF00001 7tm_1: 7 transmembran 98.9 5.1E-11 1.1E-15 110.4 -5.4 59 165-223 55-114 (257)
20 PF05296 TAS2R: Mammalian tast 98.8 6E-08 1.3E-12 93.6 13.2 253 93-419 5-294 (303)
21 PF05462 Dicty_CAR: Slime mold 98.8 7.6E-08 1.6E-12 92.3 13.3 236 96-416 8-260 (303)
22 PF10323 7TM_GPCR_Srv: Serpent 98.8 2.6E-09 5.6E-14 102.1 2.2 178 239-419 76-276 (283)
23 KOG4219|consensus 98.2 7.4E-07 1.6E-11 86.1 3.5 54 4-57 39-92 (423)
24 PF11710 Git3: G protein-coupl 98.2 3.4E-05 7.4E-10 69.8 13.6 119 233-358 69-199 (201)
25 PF10320 7TM_GPCR_Srsx: Serpen 98.1 4.1E-08 9E-13 92.5 -8.1 44 12-55 2-45 (257)
26 PF10321 7TM_GPCR_Srt: Serpent 98.0 2.8E-05 6.1E-10 75.1 9.5 248 91-419 29-300 (313)
27 PF10317 7TM_GPCR_Srd: Serpent 97.8 0.00017 3.6E-09 69.4 11.6 252 100-419 4-289 (292)
28 KOG4220|consensus 97.7 2.7E-05 5.8E-10 75.5 3.9 52 5-56 35-86 (503)
29 PF03402 V1R: Vomeronasal orga 97.7 9.2E-05 2E-09 69.4 7.3 215 124-418 6-261 (265)
30 PF10292 7TM_GPCR_Srab: Serpen 97.6 0.0011 2.3E-08 64.8 12.8 253 98-418 20-298 (324)
31 PF10327 7TM_GPCR_Sri: Serpent 97.5 0.0015 3.3E-08 63.0 12.1 252 95-418 9-301 (303)
32 PF10326 7TM_GPCR_Str: Serpent 97.4 3.8E-05 8.3E-10 74.3 -0.4 252 102-419 6-305 (307)
33 PF02118 Srg: Srg family chemo 97.0 0.0028 6.1E-08 60.1 8.1 180 236-419 79-274 (275)
34 PF10328 7TM_GPCR_Srx: Serpent 96.9 0.00044 9.6E-09 65.8 1.6 37 10-46 3-39 (274)
35 PF10319 7TM_GPCR_Srj: Serpent 96.5 0.11 2.4E-06 49.6 14.7 252 102-419 12-309 (310)
36 PF02101 Ocular_alb: Ocular al 96.4 0.045 9.7E-07 53.3 11.6 133 236-379 114-270 (405)
37 PF04789 DUF621: Protein of un 96.0 0.14 3E-06 47.8 12.0 173 240-418 92-290 (305)
38 PF00002 7tm_2: 7 transmembran 95.7 0.0053 1.2E-07 57.0 1.8 77 237-317 71-147 (242)
39 PF02117 7TM_GPCR_Sra: Serpent 95.1 0.31 6.7E-06 47.6 12.1 43 233-275 96-138 (328)
40 PF10316 7TM_GPCR_Srbc: Serpen 93.9 0.89 1.9E-05 43.1 11.8 54 101-154 12-65 (273)
41 PF10322 7TM_GPCR_Sru: Serpent 91.9 1.2 2.7E-05 42.9 9.7 182 236-419 101-305 (307)
42 PF10318 7TM_GPCR_Srh: Serpent 90.8 1.8 3.9E-05 41.5 9.9 176 238-418 85-294 (302)
43 PF10324 7TM_GPCR_Srw: Serpent 89.5 0.13 2.8E-06 49.8 0.7 46 10-55 6-51 (318)
44 KOG4193|consensus 87.7 0.83 1.8E-05 48.2 5.2 85 237-322 385-471 (610)
45 PF01534 Frizzled: Frizzled/Sm 87.4 20 0.00043 35.0 14.2 96 232-327 88-183 (328)
46 PF10323 7TM_GPCR_Srv: Serpent 85.0 4.7 0.0001 38.4 8.5 101 125-225 29-135 (283)
47 PF02175 7TM_GPCR_Srb: Serpent 83.6 11 0.00024 34.6 9.6 48 236-283 83-130 (236)
48 PF06681 DUF1182: Protein of u 81.5 28 0.00062 31.3 11.1 39 234-272 113-151 (226)
49 PF03125 Sre: C. elegans Sre G 76.5 12 0.00025 37.2 8.2 39 241-279 126-164 (365)
50 PF02076 STE3: Pheromone A rec 64.3 60 0.0013 31.0 9.7 84 236-320 57-145 (283)
51 KOG4564|consensus 61.9 1.1E+02 0.0023 31.5 11.4 82 233-319 224-305 (473)
52 PF11710 Git3: G protein-coupl 61.5 0.26 5.7E-06 44.5 -6.5 76 124-199 31-106 (201)
53 PF11970 Git3_C: G protein-cou 56.4 5.3 0.00012 30.0 0.9 56 360-417 19-75 (76)
54 PF03383 Serpentine_r_xa: Caen 48.4 55 0.0012 28.1 5.9 56 245-300 51-108 (153)
55 PF02118 Srg: Srg family chemo 44.2 55 0.0012 30.5 6.0 114 105-218 8-132 (275)
56 PF13853 7tm_4: Olfactory rece 42.0 3.2 6.8E-05 35.3 -2.7 75 282-356 5-87 (144)
57 PF05296 TAS2R: Mammalian tast 41.6 5.4 0.00012 38.5 -1.4 44 3-46 9-55 (303)
58 PF10316 7TM_GPCR_Srbc: Serpen 35.0 14 0.00031 35.0 0.3 32 180-211 94-125 (273)
59 PF00002 7tm_2: 7 transmembran 32.8 22 0.00048 32.5 1.2 93 107-200 13-105 (242)
60 PF02117 7TM_GPCR_Sra: Serpent 29.2 1.4E+02 0.0031 29.0 6.3 107 96-202 22-136 (328)
No 1
>KOG4219|consensus
Probab=100.00 E-value=4.1e-38 Score=298.31 Aligned_cols=261 Identities=23% Similarity=0.441 Sum_probs=215.6
Q ss_pred cccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccc
Q psy17031 87 IRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTA 166 (419)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~ 166 (419)
...+........+++..+.+++++||+++++++..+|++|+.+|+|+.|||+||+.++++..++.........|.+|+.+
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~ 107 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY 107 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence 34444455566788889999999999999999999999999999999999999999999999999999888999999999
Q ss_pred eeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHH
Q psy17031 167 CKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQA 246 (419)
Q Consensus 167 C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~ 246 (419)
|+++.|+......+|+++|+|||+|||+||.||+
T Consensus 108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl---------------------------------------------- 141 (423)
T KOG4219|consen 108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPL---------------------------------------------- 141 (423)
T ss_pred eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhc----------------------------------------------
Confidence 9999998888888888888888877777777664
Q ss_pred HHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecC-----CCceeeccccc-
Q psy17031 247 VVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQG-----TSQCWIEFEKP- 320 (419)
Q Consensus 247 ~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~-----~~~C~~~~~~~- 320 (419)
+.+.++|...+.+.++|+++++++.|..........+. ...|...++++
T Consensus 142 -------------------------~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~ 196 (423)
T KOG4219|consen 142 -------------------------QPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHV 196 (423)
T ss_pred -------------------------ccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEeccccc
Confidence 44557888889999999999999999999877665543 45565555443
Q ss_pred ----hhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------------------eEEEEEechh
Q psy17031 321 ----WQW---QLYMSLVALALFVIPAVIISICYILIITTIWAKSK-------------------------LYTFVLCWSP 368 (419)
Q Consensus 321 ----~~~---~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-------------------------~~~f~~cw~P 368 (419)
... +.|.....++.+++|++++...|..|.+++|+++. ++.|.+||+|
T Consensus 197 ~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlP 276 (423)
T KOG4219|consen 197 CPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLP 276 (423)
T ss_pred CCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 111 22667778899999999999999999999998654 7999999999
Q ss_pred HHHHHHHHHhcC-cCCCchhhHHHHHHHHHhccccccchhhhhcccCCccC
Q psy17031 369 YIVFDLLQVYGY-IPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 418 (419)
Q Consensus 369 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~ 418 (419)
++.+.++..... ..+.......+....||++.|+|+||+||++.|++||.
T Consensus 277 yh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~ 327 (423)
T KOG4219|consen 277 YHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRG 327 (423)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHH
Confidence 999999875543 22333334466678999999999999999999999884
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=8.1e-36 Score=291.48 Aligned_cols=257 Identities=18% Similarity=0.260 Sum_probs=188.3
Q ss_pred ccccchHHHHHHHHHHHHHHhhhheeeEEeE--ecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccce
Q psy17031 90 LTKLNTEQFVILWALFILIVLGNSAVIFTLK--FGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTAC 167 (419)
Q Consensus 90 ~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~--~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C 167 (419)
....+....+++.+++++|++||.++++++. +++++|+++|+|+.|||+||++.++...|... .. .+.|
T Consensus 28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~-~~-~~~w------- 98 (338)
T PHA03234 28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTL-NR-EALF------- 98 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCc-------
Confidence 3345666788999999999999999998553 55566899999999999999999876554433 21 2234
Q ss_pred eeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHH
Q psy17031 168 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAV 247 (419)
Q Consensus 168 ~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~ 247 (419)
.+|+..|++..+....
T Consensus 99 ----------------------------------------------------------------~fG~~lCk~~~~~~~~ 114 (338)
T PHA03234 99 ----------------------------------------------------------------NFNQAFCQCVLFIYHA 114 (338)
T ss_pred ----------------------------------------------------------------cCchhHHHHHHHHHHH
Confidence 5566677777777888
Q ss_pred HHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCC-CceeeccccchhHHHH
Q psy17031 248 VTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGT-SQCWIEFEKPWQWQLY 326 (419)
Q Consensus 248 ~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~-~~C~~~~~~~~~~~~~ 326 (419)
..++|+++++++++|||.+|++|.+++.++++....+++.|+.+++.++|.....+..+.+++ ..|...++++..+..+
T Consensus 115 ~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 194 (338)
T PHA03234 115 SCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLF 194 (338)
T ss_pred HHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHH
Confidence 888999999999999999999999876544445556667799999999998765544333322 5687766543222222
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----c--------eEEEEEechhHHHHHHHHHhcC---cCCCc--
Q psy17031 327 MS---LVALALFVIPAVIISICYILIITTIWAKS-----K--------LYTFVLCWSPYIVFDLLQVYGY---IPRTQ-- 385 (419)
Q Consensus 327 ~~---~~~~~~~~vp~~ii~~~y~~i~~~l~~~~-----~--------~~~f~~cw~P~~v~~~~~~~~~---~~~~~-- 385 (419)
.. ....+.+++|+++|.+||.+|.+++++++ | +++|++||+|+++..+++.... ..+..
T Consensus 195 ~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~ 274 (338)
T PHA03234 195 IAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGL 274 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHH
Confidence 21 22334579999999999999999997632 1 7899999999999887654321 11111
Q ss_pred -hhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 386 -NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 386 -~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.......++..++++|||+||+||++.+++|||+
T Consensus 275 ~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~ 309 (338)
T PHA03234 275 AQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR 309 (338)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence 1223456788999999999999999999999974
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=270.57 Aligned_cols=254 Identities=23% Similarity=0.317 Sum_probs=188.0
Q ss_pred ccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeee
Q psy17031 92 KLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVR 171 (419)
Q Consensus 92 ~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~ 171 (419)
.......+++.+++++|++||.++++++.++++ +++.|+++.|||+||++. ++..|..+.... .+|
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w----------- 91 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEW----------- 91 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCc-----------
Confidence 345677889999999999999999987766554 457899999999999976 556776554332 234
Q ss_pred eeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHH
Q psy17031 172 YSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYS 251 (419)
Q Consensus 172 ~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~ 251 (419)
..|+..|+...+....+..+
T Consensus 92 ------------------------------------------------------------~~g~~~C~~~~~~~~~~~~~ 111 (323)
T PHA02834 92 ------------------------------------------------------------IFGEFMCKLVLGVYFVGFFS 111 (323)
T ss_pred ------------------------------------------------------------CCcchHHHhHHHHHHHHHHH
Confidence 55666777777777777778
Q ss_pred HHHHHHHHHHhhheeeeccccccc-cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceeeccccchh--HHHHHH
Q psy17031 252 STYVLVALSIDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQ--WQLYMS 328 (419)
Q Consensus 252 s~~~l~~i~~~Ry~~i~~p~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~--~~~~~~ 328 (419)
|.++++++++|||.+|++|++++. +.+++...+..+|+.+++.++|+.......+.++...|..+..+... ...+..
T Consensus 112 Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 191 (323)
T PHA02834 112 NMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNF 191 (323)
T ss_pred HHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccchHHHHHHHH
Confidence 889999999999999999988755 55677778889999999999998776544333344568643322211 112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------eEEEEEechhHHHHHHHHHhcCcC----CC---chhh
Q psy17031 329 LVALALFVIPAVIISICYILIITTIWAKSK-------------LYTFVLCWSPYIVFDLLQVYGYIP----RT---QNYI 388 (419)
Q Consensus 329 ~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-------------~~~f~~cw~P~~v~~~~~~~~~~~----~~---~~~~ 388 (419)
...++.|++|+++|..+|.+|.+++|++++ +++|++||+|+++..++....... +. +...
T Consensus 192 ~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~ 271 (323)
T PHA02834 192 EINIFGIVIPLIILIYCYSKILYTLKNCKNKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIV 271 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 345778999999999999999999987543 678999999999998876543211 11 1111
Q ss_pred HHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 389 AVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 389 ~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
....+..+++++||++||+||++.+++||++
T Consensus 272 ~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~ 302 (323)
T PHA02834 272 YSIDIAELISFVHCCVNPIIYAFVGKNFKKV 302 (323)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence 2345778899999999999999999999974
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=8.2e-33 Score=276.28 Aligned_cols=258 Identities=20% Similarity=0.263 Sum_probs=192.7
Q ss_pred cccccchHHHHHHHHHHHHHHhhhheeeEEeEec-c-cccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccc
Q psy17031 89 TLTKLNTEQFVILWALFILIVLGNSAVIFTLKFG-V-KRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTA 166 (419)
Q Consensus 89 ~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~-~-~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~ 166 (419)
.....+....+++.+++++|++||+++++++..+ + +.++..++|+.|||++|++. ++..|..+.. ..|
T Consensus 27 ~~~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~------ 96 (409)
T PHA03235 27 GLSAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQG------ 96 (409)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCc------
Confidence 3344566788999999999999999999875432 2 23456789999999999987 5567766532 123
Q ss_pred eeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHH
Q psy17031 167 CKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQA 246 (419)
Q Consensus 167 C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~ 246 (419)
.|..++..|++..+...
T Consensus 97 ---------------------------------------------------------------~~~~g~~~Ck~~~~l~~ 113 (409)
T PHA03235 97 ---------------------------------------------------------------LLSGSVAGCKFASLLYY 113 (409)
T ss_pred ---------------------------------------------------------------cccCCCCeehhHHHHHH
Confidence 12334578888888888
Q ss_pred HHHHHHHHHHHHHHHhhheeeeccccccc-cchhhhHHHHHHHHHHHHHHHHHHHhhee---Ee----ecCCCceeeccc
Q psy17031 247 VVTYSSTYVLVALSIDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLFHV---RL----VQGTSQCWIEFE 318 (419)
Q Consensus 247 ~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~---~~----~~~~~~C~~~~~ 318 (419)
.+..+|++++++|++|||.+|++|.+++. +++++...++++|+.+++.++|...+... .. ..+...|...++
T Consensus 114 ~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 193 (409)
T PHA03235 114 ASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFR 193 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCC
Confidence 89999999999999999999999987665 68889999999999999999997654321 11 112456865554
Q ss_pred cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------eEEEEEechhHHHHHHHHHhcCc-
Q psy17031 319 KPWQ---WQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-------------LYTFVLCWSPYIVFDLLQVYGYI- 381 (419)
Q Consensus 319 ~~~~---~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-------------~~~f~~cw~P~~v~~~~~~~~~~- 381 (419)
++.. ...+.....++.|++|+++|+++|.+|++++|++++ +++|++||+|+++..++..+...
T Consensus 194 ~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~ 273 (409)
T PHA03235 194 ADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYKKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLI 273 (409)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4322 123455566778999999999999999999975432 46799999999999887654321
Q ss_pred -C-C---CchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 382 -P-R---TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 382 -~-~---~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
. + .........+...++++||++||+||++.+++|||+
T Consensus 274 ~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~ 316 (409)
T PHA03235 274 WPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKR 316 (409)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHH
Confidence 1 1 112234566788899999999999999999999974
No 5
>KOG4220|consensus
Probab=99.97 E-value=1.7e-33 Score=266.07 Aligned_cols=191 Identities=25% Similarity=0.441 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeece
Q psy17031 96 EQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQA 175 (419)
Q Consensus 96 ~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~ 175 (419)
...++...++++.++||++|++.+..++++++..|+|+.+||+||+.+|.+.+|++.....-+.|++|...|.++..+++
T Consensus 32 ~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDY 111 (503)
T KOG4220|consen 32 FIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDY 111 (503)
T ss_pred eeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHH
Confidence 34455568999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHH
Q psy17031 176 VVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYV 255 (419)
Q Consensus 176 ~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~ 255 (419)
+.+-+|++.|..||+|||..|++|+.|
T Consensus 112 vaSNASVmNLLiISFDRYFsVTrPLtY----------------------------------------------------- 138 (503)
T KOG4220|consen 112 VASNASVMNLLIISFDRYFSVTRPLTY----------------------------------------------------- 138 (503)
T ss_pred Hhhhhhhhhhheeeeecceeecccccc-----------------------------------------------------
Confidence 888888888888888777777776665
Q ss_pred HHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEe---ecCCCceeeccccchhHHHHHHHHHH
Q psy17031 256 LVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRL---VQGTSQCWIEFEKPWQWQLYMSLVAL 332 (419)
Q Consensus 256 l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~---~~~~~~C~~~~~~~~~~~~~~~~~~~ 332 (419)
+.+++.+|+...|++.|+++++++.|.+.++.... .-....|..++-+... ......+
T Consensus 139 ----------------rakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp~---iTfGTAi 199 (503)
T KOG4220|consen 139 ----------------RAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNPA---ITFGTAI 199 (503)
T ss_pred ----------------cccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCce---eehhHHH
Confidence 33447899999999999999999999888776432 2255789988866322 2233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17031 333 ALFVIPAVIISICYILIITTIWAKSK 358 (419)
Q Consensus 333 ~~~~vp~~ii~~~y~~i~~~l~~~~~ 358 (419)
.-|-+|..+|++.|.+|++..+||.+
T Consensus 200 AAFYlPVtiM~~LY~rIyret~kR~k 225 (503)
T KOG4220|consen 200 AAFYLPVTIMTILYWRIYRETRKRQK 225 (503)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999988665
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.97 E-value=4.6e-31 Score=264.75 Aligned_cols=253 Identities=23% Similarity=0.400 Sum_probs=187.9
Q ss_pred cchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeee
Q psy17031 93 LNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 172 (419)
Q Consensus 93 ~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~ 172 (419)
.......++.+++++|++||.++++++. ++++|+++|+++.|||++|++.. +..|+.+... .++|
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W------------ 161 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQW------------ 161 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccc------------
Confidence 4456678889999999999999997654 47789999999999999999874 4567655433 2345
Q ss_pred eceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHH
Q psy17031 173 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSS 252 (419)
Q Consensus 173 ~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s 252 (419)
.+|+..|+........+.+++
T Consensus 162 -----------------------------------------------------------~fg~~~Ck~~~~l~~~~~~~S 182 (417)
T PHA02638 162 -----------------------------------------------------------IFGDFMCKVISASYYIGFFSN 182 (417)
T ss_pred -----------------------------------------------------------cccccchhhHHHHHHHHHHHH
Confidence 455566666666777777788
Q ss_pred HHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEe-------ec---CCCceeeccccc
Q psy17031 253 TYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRL-------VQ---GTSQCWIEFEKP 320 (419)
Q Consensus 253 ~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~-------~~---~~~~C~~~~~~~ 320 (419)
.+.++++++|||++|+||.+++. +++++...++++|+.+++.++|+....+..+ .+ ....|....+.+
T Consensus 183 i~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 262 (417)
T PHA02638 183 MFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNE 262 (417)
T ss_pred HHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeecccc
Confidence 88888888888999999988765 5566677889999999999999988655331 11 134676544322
Q ss_pred h----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------eEEEEEechhHHHHHHHHHhcCc-
Q psy17031 321 W----Q-WQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-------------LYTFVLCWSPYIVFDLLQVYGYI- 381 (419)
Q Consensus 321 ~----~-~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-------------~~~f~~cw~P~~v~~~~~~~~~~- 381 (419)
. . ...+.....++.+++|++++++||.+|+++++|.++ +++|++||+|+++..++......
T Consensus 263 ~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~ 342 (417)
T PHA02638 263 KNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFK 342 (417)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 1 1 122334445777899999999999999999976332 78999999999999888754311
Q ss_pred --------CCC--chhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 382 --------PRT--QNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 382 --------~~~--~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.+. ........++..++++|||+||+||++.+++|||+
T Consensus 343 ~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~ 390 (417)
T PHA02638 343 GFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMH 390 (417)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHH
Confidence 111 11223455778899999999999999999999974
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=248.59 Aligned_cols=262 Identities=23% Similarity=0.372 Sum_probs=201.5
Q ss_pred CccccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccc
Q psy17031 85 SPIRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGN 164 (419)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~ 164 (419)
+........+.....++.+++++|++||.++++++.++ ++|++.|+++.|||++|++.++. .|.........
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~------ 102 (335)
T PHA03087 31 DLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILF------ 102 (335)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCC------
Confidence 33344455666777888899999999999999998887 88999999999999999987664 44444333333
Q ss_pred cceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhH
Q psy17031 165 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYS 244 (419)
Q Consensus 165 ~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~ 244 (419)
+|..++..|+...+.
T Consensus 103 -----------------------------------------------------------------~~~~~~~~C~~~~~~ 117 (335)
T PHA03087 103 -----------------------------------------------------------------QWSFGEFACKIVSGL 117 (335)
T ss_pred -----------------------------------------------------------------CCCCCcHHHHHHHHH
Confidence 345567788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceeeccccch-
Q psy17031 245 QAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPW- 321 (419)
Q Consensus 245 ~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~- 321 (419)
......++.+.++++++|||.++++|++++. +++++...+.++|+.+++.+.|+.........++...|..++.+..
T Consensus 118 ~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~ 197 (335)
T PHA03087 118 YYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNKTM 197 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCcch
Confidence 8888899999999999999999999998876 7888899999999999999999888766655556667876665332
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------eEEEEEechhHHHHHHHHHhc---CcCC
Q psy17031 322 QWQL-YMSLVALALFVIPAVIISICYILIITTIWAKSK--------------LYTFVLCWSPYIVFDLLQVYG---YIPR 383 (419)
Q Consensus 322 ~~~~-~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~--------------~~~f~~cw~P~~v~~~~~~~~---~~~~ 383 (419)
.... ......++.+++|.++++++|.++.++++|+++ +++|++||.|+.+..+..... ..+.
T Consensus 198 ~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~ 277 (335)
T PHA03087 198 NWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSG 277 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 2222 223345677999999999999999999987542 688999999999987765432 1111
Q ss_pred Cc---hhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 384 TQ---NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 384 ~~---~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.. .......+...++.+|+++||+||++++++|||+
T Consensus 278 ~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~ 316 (335)
T PHA03087 278 CKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH 316 (335)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence 11 1223445677888999999999999999999974
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.94 E-value=2.2e-27 Score=220.89 Aligned_cols=226 Identities=34% Similarity=0.597 Sum_probs=191.1
Q ss_pred hhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhhHHHHHhh
Q psy17031 111 GNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSI 190 (419)
Q Consensus 111 gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~L~~is~ 190 (419)
||.++++++.+++++|++.++++.|||++|++.++...|........++|
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~------------------------------ 50 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDW------------------------------ 50 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSC------------------------------
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccc------------------------------
Confidence 89999999999999999999999999999999999999988776544444
Q ss_pred hhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeecc
Q psy17031 191 DRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270 (419)
Q Consensus 191 dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p 270 (419)
..++..|+...+........+.+.++++++|||.++++|
T Consensus 51 -----------------------------------------~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p 89 (257)
T PF00001_consen 51 -----------------------------------------IFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHP 89 (257)
T ss_dssp -----------------------------------------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred -----------------------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence 556678888888888999999999999999999999999
Q ss_pred ccccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecC--CCceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17031 271 MNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQG--TSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICY 346 (419)
Q Consensus 271 ~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y 346 (419)
+++++ +++++...+..+|+.++..++|+..........+ ...|..+.++.. ...+.....++.+.+|++++..+|
T Consensus 90 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~ 168 (257)
T PF00001_consen 90 LRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS-SQIYFIYFFIVFFILPLIIILICY 168 (257)
T ss_dssp HTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH-HHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccceeeeeeec
Confidence 99988 7789999999999999999999988755544443 467988776665 456677778888999999999999
Q ss_pred HHHHHHHHhcCc---------------------------eEEEEEechhHHHHHHHHHhcCcCCCchhhHHHHHHHHHhc
Q psy17031 347 ILIITTIWAKSK---------------------------LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAP 399 (419)
Q Consensus 347 ~~i~~~l~~~~~---------------------------~~~f~~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 399 (419)
.++.+++||+++ +++|++||+|+.+..++.......+. .......+..++.+
T Consensus 169 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 247 (257)
T PF00001_consen 169 IRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSL-ISSILFYISYFLAF 247 (257)
T ss_dssp HHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTC-SHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccch-hhHHHHHHHHHHHH
Confidence 999999886433 68899999999999998888755433 56667888999999
Q ss_pred cccccchhhh
Q psy17031 400 LNSAANPIIY 409 (419)
Q Consensus 400 ~~s~~nP~iY 409 (419)
+|+++||++|
T Consensus 248 ~~s~~nP~iY 257 (257)
T PF00001_consen 248 LNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhCcEEC
Confidence 9999999998
No 9
>KOG2087|consensus
Probab=99.86 E-value=5.5e-22 Score=186.93 Aligned_cols=258 Identities=21% Similarity=0.350 Sum_probs=201.1
Q ss_pred chHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeee
Q psy17031 94 NTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYS 173 (419)
Q Consensus 94 ~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 173 (419)
...+-+..+++..+++.||.+|+......+...++..+++.|||.||+++++.......++...
T Consensus 24 ~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~---------------- 87 (363)
T KOG2087|consen 24 YWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKT---------------- 87 (363)
T ss_pred cceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHH----------------
Confidence 4455677889999999999999999988888888999999999999999999777666554321
Q ss_pred ceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHH
Q psy17031 174 QAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSST 253 (419)
Q Consensus 174 ~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~ 253 (419)
-+||. ....|..+...|+..+++..+++-.+.
T Consensus 88 ----------------~gey~--------------------------------~~ai~W~tg~gC~~aGflavFASElSv 119 (363)
T KOG2087|consen 88 ----------------RGEYY--------------------------------KHAIDWQTGLGCPVAGFLAVFASELSV 119 (363)
T ss_pred ----------------HHHHH--------------------------------HHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 12221 112345567899999999999999999
Q ss_pred HHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceeeccccchhHHHHHHHHH
Q psy17031 254 YVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVA 331 (419)
Q Consensus 254 ~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 331 (419)
+.++.+++||+..|.+|+|-++ +.|....++...|+.+++.++.|.+. ...+.....|..-..++.....+.....
T Consensus 120 ~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g--~s~Y~~~~vClPL~~~~~~s~g~y~~~~ 197 (363)
T KOG2087|consen 120 FLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFG--ISSYGASSVCLPLHIEEPLSTGYYLVAL 197 (363)
T ss_pred HHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccC--CCCCcccceeeecccCCccchhHHHHHH
Confidence 9999999999999999999777 45558888999999999999877776 3445566778654433333332566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc----------------eEEEEEechhHHHHHHHHHhcCcCCCchhhHHHHHHH
Q psy17031 332 LALFVIPAVIISICYILIITTIWAKSK----------------LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQ 395 (419)
Q Consensus 332 ~~~~~vp~~ii~~~y~~i~~~l~~~~~----------------~~~f~~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~ 395 (419)
+....+.+++|..+|++|+..++|... +.+-++||.|..+..+....+....+.... ..+..
T Consensus 198 l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~s--k~llv 275 (363)
T KOG2087|consen 198 LGLNLLAFIIIAFSYGKIYCSLRKGDLSATLISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYS--KWLLV 275 (363)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecCCCccccchhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhc--eeEEE
Confidence 778899999999999999999988443 678899999999999887776543333221 12334
Q ss_pred HHhccccccchhhhhcccCCccCC
Q psy17031 396 SLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 396 ~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
....+|||+||++|.+.++.||++
T Consensus 276 ~flPlns~~NP~LYa~fT~~fk~d 299 (363)
T KOG2087|consen 276 FFLPLNSCLNPFLYAFFTPVFKED 299 (363)
T ss_pred EEEEcccccCchhHHHcCHHHHHH
Confidence 456699999999999999999874
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.66 E-value=2.4e-16 Score=148.54 Aligned_cols=237 Identities=15% Similarity=0.184 Sum_probs=154.9
Q ss_pred HHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhhHH
Q psy17031 106 ILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVL 185 (419)
Q Consensus 106 ~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~L 185 (419)
++|++||..++....++|++|+|+++++..+|++|++.++-..|.........
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~--------------------------- 54 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDH--------------------------- 54 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhhe---------------------------
Confidence 46899999999999999999999999999999999999888777665332111
Q ss_pred HHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHHHHHhhhe
Q psy17031 186 VALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYY 265 (419)
Q Consensus 186 ~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~ 265 (419)
...+..|-...+...++...+...+..+++||+.
T Consensus 55 ----------------------------------------------~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~i 88 (257)
T PF10320_consen 55 ----------------------------------------------QITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLI 88 (257)
T ss_pred ----------------------------------------------eccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 2344678888888888888999999999999999
Q ss_pred eeeccccccccchhhhHHHHHHHHHHHHHHHHHHH-hheeEeecCCCceeeccccchh-HHHHHHHHHHHHHHHHHHHHH
Q psy17031 266 AIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAV-LFHVRLVQGTSQCWIEFEKPWQ-WQLYMSLVALALFVIPAVIIS 343 (419)
Q Consensus 266 ~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~-~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~~vp~~ii~ 343 (419)
|++.|.||++-.++.+..+.... +++.+..... .....+.+....|..+..-+.. ...+.. ...+...+.+++-.
T Consensus 89 aV~~P~~Y~~~~~~~y~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~-~~~~inv~tvivY~ 165 (257)
T PF10320_consen 89 AVCFPLRYRTISTRKYLIILLIF--PVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQIWSY-SNIIINVITVIVYI 165 (257)
T ss_pred eEeehhhhhhcccccchhhHhHH--HHHHHHHHHhheeEecCCcccccCCCccccCccHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999992222233332222 2222222222 2222233346778766533322 222222 22333333344444
Q ss_pred HHHHHHHHHHHhcCc------------eEEEEEechhHHHHHHHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhc
Q psy17031 344 ICYILIITTIWAKSK------------LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 411 (419)
Q Consensus 344 ~~y~~i~~~l~~~~~------------~~~f~~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~ 411 (419)
+.+..+.++-+++++ +..|++.|.--.+...+...... +.+....+.....+++..+.+.|-++|.+
T Consensus 166 i~~~~~~~k~~~~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~-~~~~~~~i~~~~~i~v~~~~s~~ffV~~~ 244 (257)
T PF10320_consen 166 ITIIIFKRKSRSNSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL-DGETIAIIQMYAGIFVNISYSQNFFVYYW 244 (257)
T ss_pred HHHHHHHHHccccchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHheEEEE
Confidence 444443333331111 78899999887777666544322 22223345666678888999999999999
Q ss_pred ccCCccCC
Q psy17031 412 FRTGNNNR 419 (419)
Q Consensus 412 ~~~~fR~~ 419 (419)
+|+||||+
T Consensus 245 ~S~EYR~a 252 (257)
T PF10320_consen 245 RSSEYRKA 252 (257)
T ss_pred cCHHHHHH
Confidence 99999985
No 11
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.63 E-value=3.3e-17 Score=160.36 Aligned_cols=200 Identities=14% Similarity=0.100 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhccceEEEEE--EeceeecccceehhhHHHHHhhhhcCCCCCCCCccccccCCCCCCCCCCCCcccccc
Q psy17031 5 VILWALFILIVLGNSAVIFTL--KFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASASLSGAGKSQQDAML 82 (419)
Q Consensus 5 ~~~~~~~~~~~~gN~~v~~~~--~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
++|.+++++|++||++|++++ .+++++|+++|+++.|||+||+.... ..||.
T Consensus 37 ~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~------------------------- 90 (338)
T PHA03234 37 AINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFL------------------------- 90 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHH-------------------------
Confidence 578999999999999999954 46677799999999999999833321 11110
Q ss_pred ccCccccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccc
Q psy17031 83 TWSPIRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162 (419)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~ 162 (419)
.. +...- ++ . +
T Consensus 91 -----------------------~~----~~~~~-------------------------------w~------f-G---- 101 (338)
T PHA03234 91 -----------------------TL----NREAL-------------------------------FN------F-N---- 101 (338)
T ss_pred -----------------------HH----HHhCC-------------------------------cc------C-c----
Confidence 00 00000 00 0 0
Q ss_pred cccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeee------eeeecceecccccc
Q psy17031 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTD------IVWRSSVTWKAGNT 236 (419)
Q Consensus 163 ~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~w~~~~~ 236 (419)
+.+||+..++...+.++|+++|++||+|||.||+||.++..+.+ ....++++.|..+. +.+....+.+.+..
T Consensus 102 -~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~-~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~ 179 (338)
T PHA03234 102 -QAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNN-HIGRNIGILFLASAMCAIPAALFVKTEGKKGNYG 179 (338)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhh-hHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCC
Confidence 36899999999999999999999999999999999998743222 22233344454432 21211111111223
Q ss_pred ccchhhh----HHHH------HHHHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHh
Q psy17031 237 ACKVVRY----SQAV------VTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVL 301 (419)
Q Consensus 237 ~C~~~~~----~~~~------~~~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~ 301 (419)
.|..... .... ...........+..--|..|.+-++.++ +++|+...+.++-+..++.++|+...
T Consensus 180 ~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~~~~~~k~~k~i~~vv~vF~iCWlPy~iv 256 (338)
T PHA03234 180 KCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALTEKKHKKTLFFIRILILSFLCIQIPNIAI 256 (338)
T ss_pred cCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 5643210 0000 0111122333444444555554443322 55667777777777788888898663
No 12
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.45 E-value=3.6e-14 Score=142.19 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=52.1
Q ss_pred cccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeee
Q psy17031 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDI 223 (419)
Q Consensus 163 ~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~ 223 (419)
|+..|++..++...+..+|+++|++||+|||.+|.+|.++.+.++++...+++++|+.+.+
T Consensus 101 g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll 161 (409)
T PHA03235 101 SVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLI 161 (409)
T ss_pred CCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHH
Confidence 4578999999999999999999999999999999999876555567777778888977643
No 13
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.42 E-value=3.9e-13 Score=130.84 Aligned_cols=254 Identities=19% Similarity=0.248 Sum_probs=177.1
Q ss_pred HHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhh
Q psy17031 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTY 183 (419)
Q Consensus 104 i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 183 (419)
+.++|+++|.+.+.++.++.-+.++.|.++..+|++|++..+...+..+....... .+..|.-...
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~---~~~~C~~~~s----------- 71 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFY---EDDECIPPYS----------- 71 (318)
T ss_pred EeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccCCCCccc-----------
Confidence 56799999999998877765444589999999999999999988887775432211 1222321100
Q ss_pred HHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHHHHHhh
Q psy17031 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDR 263 (419)
Q Consensus 184 ~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~R 263 (419)
-.................-.|.+..+.+|..|
T Consensus 72 ------------------------------------------------y~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR 103 (318)
T PF10324_consen 72 ------------------------------------------------YFWAYFKLIMESLSDIFRRISIWLGVLMALIR 103 (318)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011223345667778889999999999999
Q ss_pred heeeeccccccc----cchhhhHHHHHHHHHHHHHHHHHHHhheeEeec----CCCceeec---cccc-------h----
Q psy17031 264 YYAIKYPMNFCG----SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQ----GTSQCWIE---FEKP-------W---- 321 (419)
Q Consensus 264 y~~i~~p~~~~~----t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~----~~~~C~~~---~~~~-------~---- 321 (419)
+.++.+|++.+. +++.+...+..+++.+.....+.....+..+.+ +...|... ...+ .
T Consensus 104 ~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~ 183 (318)
T PF10324_consen 104 YLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTE 183 (318)
T ss_pred HHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhh
Confidence 999999997653 677888888888999998888887766555433 34567511 1000 0
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------------eEEEEEechhHHHHHH
Q psy17031 322 ----QWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-----------------------LYTFVLCWSPYIVFDL 374 (419)
Q Consensus 322 ----~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-----------------------~~~f~~cw~P~~v~~~ 374 (419)
..+.+...-.++.-++|.++..+....+.+.+||.++ .+.|+++-+|..+..+
T Consensus 184 ~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~ 263 (318)
T PF10324_consen 184 NDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKLILFMTISFLISELPQGIIFL 263 (318)
T ss_pred hHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222233444778888888888888887776333 5899999999999999
Q ss_pred HHHhcCcC--CCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 375 LQVYGYIP--RTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 375 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
++...... ..........+...+..+|+..|++||.+++++||++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t 310 (318)
T PF10324_consen 264 LESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKT 310 (318)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHH
Confidence 87653221 1233344567888899999999999999999999973
No 14
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.40 E-value=2.8e-14 Score=143.51 Aligned_cols=137 Identities=21% Similarity=0.333 Sum_probs=80.7
Q ss_pred cceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCccccc-ccchhcccccceeeeeeeeeeecc------e-------e
Q psy17031 165 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG-SCKYIRDLCVGVLSVLTDIVWRSS------V-------T 230 (419)
Q Consensus 165 ~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~-------~ 230 (419)
.+|++..+++..+.++|+++|++|++|||+||+||.++.+ +.++.....+++.|..+......+ . +
T Consensus 166 ~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~ 245 (417)
T PHA02638 166 FMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQD 245 (417)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 6799988888889999999999999999999999999843 344555566677776664332211 0 0
Q ss_pred ccc--cccccchhh--------hH----HHHHHHHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHH
Q psy17031 231 WKA--GNTACKVVR--------YS----QAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFIL 294 (419)
Q Consensus 231 w~~--~~~~C~~~~--------~~----~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~ 294 (419)
... .+..|.... .. ..............+.+-.|..|.+-++..+ +++|+..++..+-+..+++
T Consensus 246 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~~~k~k~~rli~~ivi~f~lc 325 (417)
T PHA02638 246 SNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKKSKKTKSIIIVSIIIICSLIC 325 (417)
T ss_pred CCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHH
Confidence 000 123564211 00 0001122222333334444555544443322 3455666666777777788
Q ss_pred HHHHHHh
Q psy17031 295 SIPIAVL 301 (419)
Q Consensus 295 ~~p~~~~ 301 (419)
+.|+...
T Consensus 326 W~Py~i~ 332 (417)
T PHA02638 326 WIPLNIV 332 (417)
T ss_pred HhhHHHH
Confidence 8887663
No 15
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.39 E-value=1.5e-14 Score=141.17 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCCCCCccccccCCCCCCCCCCCCcccccc
Q psy17031 3 QFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASASLSGAGKSQQDAML 82 (419)
Q Consensus 3 ~~~~~~~~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
..+++.+++++|++||++|++++.++|++ +++|+++.|||+||... ...+|.
T Consensus 31 ~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~-------------------------- 82 (323)
T PHA02834 31 VIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPF-------------------------- 82 (323)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHH--------------------------
Confidence 45778999999999999999998776654 57899999999998322 111110
Q ss_pred ccCccccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccc
Q psy17031 83 TWSPIRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKA 162 (419)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~ 162 (419)
.+. +.. . . +.. +
T Consensus 83 ----------------------~i~----~~~------~-~------------------------------w~~-g---- 94 (323)
T PHA02834 83 ----------------------IIH----NDL------N-E------------------------------WIF-G---- 94 (323)
T ss_pred ----------------------HHH----HHc------C-C------------------------------cCC-c----
Confidence 000 000 0 0 000 0
Q ss_pred cccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeee
Q psy17031 163 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTD 222 (419)
Q Consensus 163 ~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~ 222 (419)
+..|+...++...+..+|+++|++||+|||.+|.+|.++..+.+++...+++++|..+.
T Consensus 95 -~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~ 153 (323)
T PHA02834 95 -EFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSV 153 (323)
T ss_pred -chHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHH
Confidence 25688877777778889999999999999999999998744444445555667776553
No 16
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.32 E-value=4.1e-12 Score=124.47 Aligned_cols=122 Identities=25% Similarity=0.333 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCCCCCccccccCCCCCCCCCCCCccccccc
Q psy17031 4 FVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASASLSGAGKSQQDAMLT 83 (419)
Q Consensus 4 ~~~~~~~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (419)
-+++.+++++|++||+++++++.++ ++|++.|+++.|||++|..... ..|
T Consensus 44 ~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~---------------------------- 93 (335)
T PHA03087 44 IVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLP---------------------------- 93 (335)
T ss_pred HHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHH----------------------------
Confidence 3567888999999999999999888 9999999999999999722110 000
Q ss_pred cCccccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhccccccc
Q psy17031 84 WSPIRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAG 163 (419)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~ 163 (419)
.+.. ........ +|
T Consensus 94 ---------------------------~~~~-----------------------------------~~~~~~~~----~~ 107 (335)
T PHA03087 94 ---------------------------FQIY-----------------------------------YYILFQWS----FG 107 (335)
T ss_pred ---------------------------HHHH-----------------------------------HHhCCCCC----CC
Confidence 0000 00000000 23
Q ss_pred ccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccc-cccchhcccccceeeeee
Q psy17031 164 NTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFC-GSCKYIRDLCVGVLSVLT 221 (419)
Q Consensus 164 ~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~-~~~~~~~~~~~~~~~~~~ 221 (419)
+..|+...++......+|++++++||+|||.+|.+|++|. ...+++...++.+.|..+
T Consensus 108 ~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~ 166 (335)
T PHA03087 108 EFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIIS 166 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHH
Confidence 5678888888888999999999999999999999999994 445566666666777654
No 17
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.01 E-value=9.1e-10 Score=104.88 Aligned_cols=126 Identities=14% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhh
Q psy17031 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTY 183 (419)
Q Consensus 104 i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 183 (419)
++.+|++.|.++++.+.+.+++|++.+....+.|++|.+.+.....+.......+.-
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~----------------------- 59 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDIS----------------------- 59 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----------------------
Confidence 567899999999999999999999999999999999999988655433322111100
Q ss_pred HHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceecccccccc-chhhhHHHHHHHHHHHHHHHHHHh
Q psy17031 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTAC-KVVRYSQAVVTYSSTYVLVALSID 262 (419)
Q Consensus 184 ~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C-~~~~~~~~~~~~~s~~~l~~i~~~ 262 (419)
...+... ...+.....+-..+.+.-.++|++
T Consensus 60 ------------------------------------------------~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiN 91 (274)
T PF10328_consen 60 ------------------------------------------------FLPSSLNSIIFGFIGMFCYFIGPLSHLLIAIN 91 (274)
T ss_pred ------------------------------------------------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000111 122455556666788999999999
Q ss_pred hheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHH
Q psy17031 263 RYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAV 300 (419)
Q Consensus 263 Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~ 300 (419)
|+.++..|.+|++ +.+.+...+++.|+.++....+...
T Consensus 92 Rf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 92 RFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 9999999999988 8888999999999999977765544
No 18
>KOG2087|consensus
Probab=98.92 E-value=4.9e-09 Score=99.79 Aligned_cols=130 Identities=19% Similarity=0.327 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCCCCCccccccCCCCCCCCCCCCcccccccc
Q psy17031 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASASLSGAGKSQQDAMLTW 84 (419)
Q Consensus 5 ~~~~~~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (419)
+.-|++.++++.||.+|+......|...++..+++.|||.||
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad-------------------------------------- 70 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFAD-------------------------------------- 70 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHH--------------------------------------
Confidence 456899999999999999999999999999999999999994
Q ss_pred CccccccccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccc
Q psy17031 85 SPIRTLTKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGN 164 (419)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~ 164 (419)
.+ +++|+.-+|..|.-.-.-..- ....|+. .
T Consensus 71 ----------------------------~~--------------mGiYl~~ia~vD~~~~gey~~------~ai~W~t-g 101 (363)
T KOG2087|consen 71 ----------------------------LL--------------MGIYLGLIASVDAKTRGEYYK------HAIDWQT-G 101 (363)
T ss_pred ----------------------------HH--------------cchHHHHHHHhhHHHHHHHHH------HHHhhhh-c
Confidence 43 567888888888877553332 2335544 4
Q ss_pred cceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccc-hhcccccceeeeee
Q psy17031 165 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCK-YIRDLCVGVLSVLT 221 (419)
Q Consensus 165 ~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~-~~~~~~~~~~~~~~ 221 (419)
..|++.+|+..+.+.+|+++|+.+++||++.|++|++-.++-| +...++..+.|..+
T Consensus 102 ~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~ 159 (363)
T KOG2087|consen 102 LGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFA 159 (363)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999855544 33556666666544
No 19
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.88 E-value=5.1e-11 Score=110.41 Aligned_cols=59 Identities=24% Similarity=0.438 Sum_probs=47.3
Q ss_pred cceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCcccccc-cchhcccccceeeeeeee
Q psy17031 165 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGS-CKYIRDLCVGVLSVLTDI 223 (419)
Q Consensus 165 ~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~-~~~~~~~~~~~~~~~~~~ 223 (419)
..|++..++......+|.++++++++|||.+|.+|.+|.+. ++++...++.++|..+..
T Consensus 55 ~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~ 114 (257)
T PF00001_consen 55 FLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFL 114 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45777777777888899999999999999999999999444 446667777888876643
No 20
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.81 E-value=6e-08 Score=93.57 Aligned_cols=253 Identities=16% Similarity=0.205 Sum_probs=162.2
Q ss_pred cchHHHHHHHHHHHHHHhhhheeeEEeEe---cccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceee
Q psy17031 93 LNTEQFVILWALFILIVLGNSAVIFTLKF---GVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKV 169 (419)
Q Consensus 93 ~~~~~~~~~~~i~~vgl~gN~lvl~~i~~---~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~ 169 (419)
.+....++.....++|++||+.++.+... +++.-+|.|..+.+||+++++..................
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~--------- 75 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNI--------- 75 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchh---------
Confidence 34556777778899999999998866543 333447999999999999998866555443333211100
Q ss_pred eeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHH
Q psy17031 170 VRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVT 249 (419)
Q Consensus 170 ~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~ 249 (419)
...+..++...+...+..
T Consensus 76 --------------------------------------------------------------~~~~~~~~~~~~~~~f~~ 93 (303)
T PF05296_consen 76 --------------------------------------------------------------YFSENVYKIIDFLWMFSN 93 (303)
T ss_pred --------------------------------------------------------------hhhhhHHHHHHHHHHHHh
Confidence 123346666777788889
Q ss_pred HHHHHHHHHHHHhhheeeeccccccc--cc----hhhhHHHHHHHHHHHHHHHHHHHhheeEee----cCCCceeecccc
Q psy17031 250 YSSTYVLVALSIDRYYAIKYPMNFCG--SW----RRARWLVGIAWLISFILSIPIAVLFHVRLV----QGTSQCWIEFEK 319 (419)
Q Consensus 250 ~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~----~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~----~~~~~C~~~~~~ 319 (419)
..+.+.-+++++-.+.-|....+.-- -+ +.....+...++.++...++.......... +....+..+...
T Consensus 94 ~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~N~t~~~~~ 173 (303)
T PF05296_consen 94 SSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSRNSTSNFQE 173 (303)
T ss_pred HHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCCcceEEeec
Confidence 99999999999999998886543211 11 223344566666666333332223222111 112222222222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------------eEEEEEechhHHHHHHHH
Q psy17031 320 PWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-----------------------LYTFVLCWSPYIVFDLLQ 376 (419)
Q Consensus 320 ~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-----------------------~~~f~~cw~P~~v~~~~~ 376 (419)
+.....+..........+|+++.+.+...+...++||.| +..|++.+..+.+..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~ 253 (303)
T PF05296_consen 174 SKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILS 253 (303)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444588999999999999999999988765 577777778877766654
Q ss_pred HhcC-cCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 377 VYGY-IPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 377 ~~~~-~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.... .++++ ....+...+..+.+...|++-.+.|+++||+
T Consensus 254 ~~~~~~~~~~---~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~ 294 (303)
T PF05296_consen 254 FLSFFFPENS---IWFWVCEIIIALYPSGHSIILILGNPKLRQA 294 (303)
T ss_pred HHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 3332 22222 1334555677799999999999999999975
No 21
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.80 E-value=7.6e-08 Score=92.25 Aligned_cols=236 Identities=18% Similarity=0.299 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeece
Q psy17031 96 EQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQA 175 (419)
Q Consensus 96 ~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~ 175 (419)
...++..+.++++++|-++++......|+.|++.+-.+.-++++|++..+..+......
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~--------------------- 66 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSP--------------------- 66 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 44556667788999999999999999999999999999999999998776543322110
Q ss_pred eehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHH
Q psy17031 176 VVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYV 255 (419)
Q Consensus 176 ~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~ 255 (419)
+-..++..|..+++...++..++.+-
T Consensus 67 ------------------------------------------------------~~~~~s~lC~~Qafliq~f~~as~lW 92 (303)
T PF05462_consen 67 ------------------------------------------------------SAGENSFLCQFQAFLIQFFMLASFLW 92 (303)
T ss_pred ------------------------------------------------------cCCCCCcchhhHhHHHHHhhHHHHHH
Confidence 01334578999999999999999999
Q ss_pred HHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceeeccccchhHHHHHHHHH-HHH
Q psy17031 256 LVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVA-LAL 334 (419)
Q Consensus 256 l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~-~~~ 334 (419)
-++||++=|..+++... +.+|.-..-...+|.++++.+..++. .......+..|....+.+. .+....+.- .+.
T Consensus 93 t~~iA~nly~~~~~~~~--~~~k~e~~Y~l~~wGiPli~a~i~l~--~~~~g~~G~WCWI~~~~~~-~r~~lfY~Pl~ii 167 (303)
T PF05462_consen 93 TLCIAFNLYLTFVKRYD--ELEKLEKYYHLVCWGIPLIPAVIPLI--GNDYGPAGNWCWIKPEWDV-WRFALFYIPLWII 167 (303)
T ss_pred HHHHHHHhhheeEEcCc--cHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCCCCCCceeecCCCcc-hHHHHHHHHHHHH
Confidence 99999999998886532 33444455678889999988765543 2223334568987644321 111111100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----c-C--c--------eEEEEEechhHHHHHHHHHhcCcCCCchhhHHHHHHHHHh
Q psy17031 335 FVIPAVIISICYILIITTIWA-----K-S--K--------LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLA 398 (419)
Q Consensus 335 ~~vp~~ii~~~y~~i~~~l~~-----~-~--~--------~~~f~~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~ 398 (419)
+.+..+++....-..++..+. + + + .++|.+||.|-.+.++.+..+..+ .++..+-..++
T Consensus 168 ~~~~~ilv~i~~~~~y~~~~~~~sd~~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~~~-----~~l~~Lh~~~s 242 (303)
T PF05462_consen 168 IIISAILVGITMRYIYRVIRNGVSDNKDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIGKNP-----FWLSVLHVGFS 242 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHH
Confidence 111111111111111111110 0 0 0 689999999999999988766321 23333334556
Q ss_pred ccccccchhhhhcccCCc
Q psy17031 399 PLNSAANPIIYCIFRTGN 416 (419)
Q Consensus 399 ~~~s~~nP~iY~~~~~~f 416 (419)
.+...+|.++|++.++..
T Consensus 243 ~lqGf~nsivy~~n~~~~ 260 (303)
T PF05462_consen 243 PLQGFFNSIVYGYNNSLM 260 (303)
T ss_pred HHHHHHHHHHHHhCCHHH
Confidence 678899999999877643
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.77 E-value=2.6e-09 Score=102.15 Aligned_cols=178 Identities=21% Similarity=0.296 Sum_probs=108.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhheeeeccc-cccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceee
Q psy17031 239 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM-NFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWI 315 (419)
Q Consensus 239 ~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~-~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~ 315 (419)
+.................+.+++.||.+|++|. ++++ ++.+...++.+-|+.+++.++|.....+......++ ..
T Consensus 76 ~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~--~~ 153 (283)
T PF10323_consen 76 AIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN--MS 153 (283)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc--ee
Confidence 334445556777888899999999999999999 5555 777788888999999999998855544433333322 22
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------------eEEEEEe--chhHHHHHHHH
Q psy17031 316 EFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-----------------LYTFVLC--WSPYIVFDLLQ 376 (419)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-----------------~~~f~~c--w~P~~v~~~~~ 376 (419)
...+....+ ...........+..+..+++|+.+...+||+++ .-+++.+ ..-..++....
T Consensus 154 ~~~d~~~~~-~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~ 232 (283)
T PF10323_consen 154 LFVDPEFIQ-RNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFS 232 (283)
T ss_pred eecCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 223344455667777888999999999995422 1111111 11111111221
Q ss_pred Hh-cCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 377 VY-GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 377 ~~-~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.. ....+.+...........+..+.|.+||+.-.+.|+++||+
T Consensus 233 ~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~ 276 (283)
T PF10323_consen 233 NYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQ 276 (283)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHH
Confidence 11 12222221223333555566688999999999999999985
No 23
>KOG4219|consensus
Probab=98.23 E-value=7.4e-07 Score=86.12 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCCCC
Q psy17031 4 FVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPT 57 (419)
Q Consensus 4 ~~~~~~~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~~ 57 (419)
.++|++++.++++||++|+|+++.+|++|+.+|+|+.|||.||+..+..+.+..
T Consensus 39 ai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~ 92 (423)
T KOG4219|consen 39 AIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFN 92 (423)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467899999999999999999999999999999999999999999998888864
No 24
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.20 E-value=3.4e-05 Score=69.75 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=72.2
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeecccc------ccc-----cchhhhHHHHHHHHHHHHHHHHHHHh
Q psy17031 233 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN------FCG-----SWRRARWLVGIAWLISFILSIPIAVL 301 (419)
Q Consensus 233 ~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~------~~~-----t~~~~~~~i~~~W~~s~~~~~p~~~~ 301 (419)
.+...|..++++......++.+...+++++-|..+.+|.. ..+ .+........+.|++...++ ...
T Consensus 69 ~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la---~i~ 145 (201)
T PF11710_consen 69 APSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLA---FIG 145 (201)
T ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHH---Hhc
Confidence 4568899999999999999999999999999999998821 111 11112222223444333322 222
Q ss_pred -heeEeecCCCceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17031 302 -FHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK 358 (419)
Q Consensus 302 -~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~ 358 (419)
.+..+.+.+..|..+.......... .-+--.+..+.+++.|..|+..+||+.|
T Consensus 146 ~~~~~Y~~~g~WCWi~~~~~~~Rl~l----~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 146 LGGPGYGPAGAWCWIPSRYEWYRLWL----HYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred cccCcccccCcEEEECCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1222334578898775554322111 1122344466778889999999888654
No 25
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.09 E-value=4.1e-08 Score=92.55 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCC
Q psy17031 12 ILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYP 55 (419)
Q Consensus 12 ~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~ 55 (419)
++|++||+..+.++.++|++|+|+++++..+|++|..-.....+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~ 45 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLP 45 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHH
Confidence 46899999999999999999999999999999999655555555
No 26
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.01 E-value=2.8e-05 Score=75.07 Aligned_cols=248 Identities=15% Similarity=0.181 Sum_probs=132.6
Q ss_pred cccchHHHHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhH-HHHHHhhcccccccccceee
Q psy17031 91 TKLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVL-TDIVWRSSVTWKAGNTACKV 169 (419)
Q Consensus 91 ~~~~~~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p-~~~~~~~~~~~~~~~~~C~~ 169 (419)
...+......+.+.+++-.+.+...++++.+++..|.+.+-.+.-||+.|+........ ..+... .|...|+.
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i------~G~vfC~~ 102 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI------FGAVFCSY 102 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh------cCccccCC
Confidence 44556666777777777777788888888777777899999999999999998765432 222221 12333443
Q ss_pred eeeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHH
Q psy17031 170 VRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVT 249 (419)
Q Consensus 170 ~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~ 249 (419)
-.+. .+.+.....+-
T Consensus 103 P~~~-----------------------------------------------------------------~i~G~~~~~~W 117 (313)
T PF10321_consen 103 PRFI-----------------------------------------------------------------YIMGCIALGSW 117 (313)
T ss_pred chHh-----------------------------------------------------------------hhhhccchhhH
Confidence 2211 11122222334
Q ss_pred HHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHH--HHHHHHHHHHHHhheeEeecCCCceeeccc---cchh
Q psy17031 250 YSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW--LISFILSIPIAVLFHVRLVQGTSQCWIEFE---KPWQ 322 (419)
Q Consensus 250 ~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W--~~s~~~~~p~~~~~~~~~~~~~~~C~~~~~---~~~~ 322 (419)
.++...-..++++|..-+..|.+.+. .+++...++.+.. ..-..+..|+..+ +.+..+....+ ++..
T Consensus 118 ~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~F------ns~~~sw~fDP~i~~g~~ 191 (313)
T PF10321_consen 118 CGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLF------NSEYMSWFFDPMIFEGKS 191 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccC------CCCcceEecCccccCCCC
Confidence 46777788899999999888765444 4445444433332 2222222233322 12222222111 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------eEE--EEEechhHHHHHHHHHhcC-cCCCch
Q psy17031 323 WQLYMSLVALALFVIPAVIISICYILIITTIWAKSK-------------LYT--FVLCWSPYIVFDLLQVYGY-IPRTQN 386 (419)
Q Consensus 323 ~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~-------------~~~--f~~cw~P~~v~~~~~~~~~-~~~~~~ 386 (419)
.+.|.-....+.-.+.......+|..+...++|+++ +.. .++|-. +.+..+.+.+-. .+.+
T Consensus 192 ~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s~~~~k~~~qI~iQs~iIC~f-~~i~a~iyv~m~f~~~p-- 268 (313)
T PF10321_consen 192 PELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTSSQLSKAQRQIFIQSVIICFF-HAIAAVIYVYMQFFPPP-- 268 (313)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-HHHHHHHHHeeeeeccc--
Confidence 122222222233344455566667777666666533 221 222222 222233332221 2222
Q ss_pred hhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 387 YIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 387 ~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.++..+.+..=.+++..+|+||...||..||+
T Consensus 269 -~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~ 300 (313)
T PF10321_consen 269 -PWLIIIGQISWQLSHGCPPIIYLTLNRTIRNS 300 (313)
T ss_pred -HHHHHHHHHHHhccCCccceEEEEECHHHHHH
Confidence 23444555555689999999999999998863
No 27
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.84 E-value=0.00017 Score=69.40 Aligned_cols=252 Identities=16% Similarity=0.124 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhhhheeeEEeEecc-cccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeeh
Q psy17031 100 ILWALFILIVLGNSAVIFTLKFGV-KRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVT 178 (419)
Q Consensus 100 ~~~~i~~vgl~gN~lvl~~i~~~~-~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 178 (419)
+..+.+.+|++.|.++++.+.++. +.-+...+++.|-|+.|++.+........ .....++
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~------------------ 64 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGT------------------ 64 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCC------------------
Confidence 455788999999999998776554 33456778999999999998764433211 1111111
Q ss_pred hhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHH
Q psy17031 179 YSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVA 258 (419)
Q Consensus 179 ~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~ 258 (419)
++ ..|..+ +- -..++..|.........+...+.+.+..
T Consensus 65 --------------------~~---------------~~~~~G------pC-~~~~~~~C~~~y~~~~~~~~~s~~~i~~ 102 (292)
T PF10317_consen 65 --------------------SI---------------AVISYG------PC-RYFGPWFCFFCYHIMLHFSIHSGWSIIL 102 (292)
T ss_pred --------------------cE---------------EEEeee------cc-eecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 001111 00 0235678888777777888888888999
Q ss_pred HHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEee--------cCCCce---ee-ccccch-hHHH
Q psy17031 259 LSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLV--------QGTSQC---WI-EFEKPW-QWQL 325 (419)
Q Consensus 259 i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~--------~~~~~C---~~-~~~~~~-~~~~ 325 (419)
--..||..+.++-. ++++....+.+.+..++...........+.+. .++... .. ...+.. ....
T Consensus 103 sf~yRy~iL~~~~~---~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~~~~~i~G~~~~~~~~~~ 179 (292)
T PF10317_consen 103 SFYYRYYILRNPSP---SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNLENYSISGFSDISSPPSL 179 (292)
T ss_pred HHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCcccccccceeeeecchhhHHHH
Confidence 99999999987644 55666666777777777665543332211100 000000 00 001111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------------eEEEEEechhHHHHHHHHHhcCcCCCc
Q psy17031 326 YMSLVALALFVIPAVIISICYILIITTIWAKSK--------------------LYTFVLCWSPYIVFDLLQVYGYIPRTQ 385 (419)
Q Consensus 326 ~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~--------------------~~~f~~cw~P~~v~~~~~~~~~~~~~~ 385 (419)
+.............+++.++--||.+.+++++. ...=.++..|-....++...+..+
T Consensus 180 ~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~--- 256 (292)
T PF10317_consen 180 INILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE--- 256 (292)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc---
Confidence 333333334444455667777889999888442 244444555555555554443222
Q ss_pred hhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 386 NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 386 ~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
..........+..+.+.+||+++...-+.+||+
T Consensus 257 -~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~ 289 (292)
T PF10317_consen 257 -HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKA 289 (292)
T ss_pred -cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHH
Confidence 222344445566688999999999999888874
No 28
>KOG4220|consensus
Probab=97.72 E-value=2.7e-05 Score=75.55 Aligned_cols=52 Identities=25% Similarity=0.338 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCCC
Q psy17031 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPP 56 (419)
Q Consensus 5 ~~~~~~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~~ 56 (419)
++-+.+.++++.||++|++-++.+|++|+..|+|+++||+||+..++..+|.
T Consensus 35 ~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl 86 (503)
T KOG4220|consen 35 VVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNL 86 (503)
T ss_pred hhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechH
Confidence 4557889999999999999999999999999999999999999999999985
No 29
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.71 E-value=9.2e-05 Score=69.41 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=118.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHh-hHHHHHHhhcccccccccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCccc
Q psy17031 124 KRRSRMNFFIMHLAVADLCVGVLS-VLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202 (419)
Q Consensus 124 ~~~~~~~~~i~~La~aDll~~~~~-~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~ 202 (419)
++.+|.|..+.|||+||.++.+.- +|.... ..... .++|..||...|++-...-.|+.+-+.+|
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLS------------- 70 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLS------------- 70 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHH-------------
Confidence 356799999999999999887654 343322 22222 24667777776666555555544444444
Q ss_pred ccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeecccccc-----c-c
Q psy17031 203 CGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFC-----G-S 276 (419)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~-----~-t 276 (419)
.-+-+.|. |...+ . .
T Consensus 71 ----------------------------------------------------------vfQAItIS-P~~s~w~~lK~k~ 91 (265)
T PF03402_consen 71 ----------------------------------------------------------VFQAITIS-PSNSRWAELKVKA 91 (265)
T ss_pred ----------------------------------------------------------HHhhEEEe-cCCchhhhhhhhc
Confidence 33333332 22111 1 3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhe---eEee----cCCCceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17031 277 WRRARWLVGIAWLISFILSIPIAVLFH---VRLV----QGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILI 349 (419)
Q Consensus 277 ~~~~~~~i~~~W~~s~~~~~p~~~~~~---~~~~----~~~~~C~~~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i 349 (419)
++.....+...|++.+.+......... .... .+...|.....+......+. ....+.-++.+.+|...-+.|
T Consensus 92 pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~-~~~~~~D~~fvgLM~~aSgyM 170 (265)
T PF03402_consen 92 PKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFA-TLLSFRDVLFVGLMIWASGYM 170 (265)
T ss_pred CCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhh-hHHHhhHHHHHHHHHhhhhhh
Confidence 344555677789888776643222211 1111 12245765443333322233 334455677788899999999
Q ss_pred HHHHHhcCc---------------------------eEEEEEechhHHHHHHHHHhcCcCCCchhhHHHHHHHHHhcccc
Q psy17031 350 ITTIWAKSK---------------------------LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNS 402 (419)
Q Consensus 350 ~~~l~~~~~---------------------------~~~f~~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s 402 (419)
...+.||++ +.+|+..+..-.+......... . .. ....+...++...+
T Consensus 171 V~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~-~-~~---~~~~~~~~ls~cfp 245 (265)
T PF03402_consen 171 VFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFK-N-SP---WLLNISVFLSSCFP 245 (265)
T ss_pred eeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhc-C-Cc---ceeEHHHHHhHHhH
Confidence 988888776 3344444444433332222111 1 11 12234456777889
Q ss_pred ccchhhhhcccCCccC
Q psy17031 403 AANPIIYCIFRTGNNN 418 (419)
Q Consensus 403 ~~nP~iY~~~~~~fR~ 418 (419)
.+.|++-.-.+++.+|
T Consensus 246 tisPfvLI~~d~~i~~ 261 (265)
T PF03402_consen 246 TISPFVLISSDKRIIK 261 (265)
T ss_pred hhChHHhhccCchHHH
Confidence 9999999888877654
No 30
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.57 E-value=0.0011 Score=64.81 Aligned_cols=253 Identities=13% Similarity=0.116 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceee
Q psy17031 98 FVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVV 177 (419)
Q Consensus 98 ~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 177 (419)
..+-.++++.|+..++..++...+++..|.-..+.+....++.++.+............ .+...+..|...
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~--~~~~~~~~Cd~~------- 90 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLY--NYFFPDDPCDMI------- 90 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHccCCCcccc-------
Confidence 34455777788877877776666666677767777777777777776544333322211 111113444433
Q ss_pred hhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHH
Q psy17031 178 TYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLV 257 (419)
Q Consensus 178 ~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~ 257 (419)
.+...|........++......+..
T Consensus 91 -------------------------------------------------------~~~~~C~~lR~~~~~~~~~~~~t~v 115 (324)
T PF10292_consen 91 -------------------------------------------------------PSTYRCFILRIPYNFGLFLVSFTTV 115 (324)
T ss_pred -------------------------------------------------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2346787888888899999999999
Q ss_pred HHHHhhheeeeccccccccchhh-hHHHHHHHHHHHHHHHHHHHhheeEe-ecCCCceeeccccchhHHHHHHHHHHHHH
Q psy17031 258 ALSIDRYYAIKYPMNFCGSWRRA-RWLVGIAWLISFILSIPIAVLFHVRL-VQGTSQCWIEFEKPWQWQLYMSLVALALF 335 (419)
Q Consensus 258 ~i~~~Ry~~i~~p~~~~~t~~~~-~~~i~~~W~~s~~~~~p~~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 335 (419)
++.+||+.|.++.-+|.++++.. ..+...-|+++...... ....... .+....|....++............++.-
T Consensus 116 ~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~--~~~~~~~~~~~~~yC~~~~~~~~~~~~~~~~~~~~~~ 193 (324)
T PF10292_consen 116 SLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYF--VYSDEDFPNERMYYCQASSSSSPYRVNIPFIVILVLQ 193 (324)
T ss_pred HHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHH--HHhhhhccCccceeeEEecCCCchhhHHHHHHHHHHH
Confidence 99999999999999998854443 33334445444432221 1222111 22234576554443222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc-----------------------eEEEEEechhHHHHHHH-HHhcCcCCCchhhHHH
Q psy17031 336 VIPAVIISICYILIITTIWAKSK-----------------------LYTFVLCWSPYIVFDLL-QVYGYIPRTQNYIAVA 391 (419)
Q Consensus 336 ~vp~~ii~~~y~~i~~~l~~~~~-----------------------~~~f~~cw~P~~v~~~~-~~~~~~~~~~~~~~~~ 391 (419)
++..+..... .+.-++.|+++. +.+..+.-..+...... .......+...+..+.
T Consensus 194 i~~~i~f~~L-~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~ 272 (324)
T PF10292_consen 194 ILALILFRYL-LRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALA 272 (324)
T ss_pred HHHHHHHHHH-HHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHH
Confidence 3333222222 222233333222 11212222222222222 2233344445555566
Q ss_pred HHHHHHhccccccchhhhhcccCCccC
Q psy17031 392 TLIQSLAPLNSAANPIIYCIFRTGNNN 418 (419)
Q Consensus 392 ~~~~~l~~~~s~~nP~iY~~~~~~fR~ 418 (419)
++... ...++.+-|++.....++.|+
T Consensus 273 e~~~~-~P~Y~ii~~~~~~~~~k~~r~ 298 (324)
T PF10292_consen 273 ELNHI-FPLYSIISPLILYRKIKKIRK 298 (324)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 65553 447788888888777777665
No 31
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.46 E-value=0.0015 Score=63.04 Aligned_cols=252 Identities=13% Similarity=0.082 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHHHHhhhheeeEEeEecc-cccchhhHHH---HHHHHHHHHHHHHhhHHHHHHhhcccccccccceeee
Q psy17031 95 TEQFVILWALFILIVLGNSAVIFTLKFGV-KRRSRMNFFI---MHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVV 170 (419)
Q Consensus 95 ~~~~~~~~~i~~vgl~gN~lvl~~i~~~~-~~~~~~~~~i---~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 170 (419)
......+-+++.++++.|.+.++.+..+. +.++-.++++ ....++|+-.+.+..|........+ .|
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-------y~--- 78 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-------YC--- 78 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-------EE---
Confidence 45667778999999999999998776654 4444333322 3567788888877777655432110 00
Q ss_pred eeeceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceec--cccccccchhhhHHHHH
Q psy17031 171 RYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTW--KAGNTACKVVRYSQAVV 248 (419)
Q Consensus 171 ~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--~~~~~~C~~~~~~~~~~ 248 (419)
.++ ..-+..+..........
T Consensus 79 ----------------------------------------------------------~G~l~~~f~i~~h~~~~i~~~l 100 (303)
T PF10327_consen 79 ----------------------------------------------------------VGFLARYFGISSHYLMTIWIFL 100 (303)
T ss_pred ----------------------------------------------------------EeehhhcCCCchHHHHHHHHHH
Confidence 000 00011122222333444
Q ss_pred HHHHHHHHHHHHHhhheeeeccccccccchhhhHH-HHHHHHHHHHHHHHHHHhheeEeec------CCCceeecc----
Q psy17031 249 TYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWL-VGIAWLISFILSIPIAVLFHVRLVQ------GTSQCWIEF---- 317 (419)
Q Consensus 249 ~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~-i~~~W~~s~~~~~p~~~~~~~~~~~------~~~~C~~~~---- 317 (419)
.....-.+...-+-|+.+|.+..+.+.-+++.... .....+...............++.+ +-..|...+
T Consensus 101 ~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP~~~~~F~~l~ 180 (303)
T PF10327_consen 101 FIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYPEYLSWFSSLP 180 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCchhHHHhcCC
Confidence 55555667777888999999998777633444433 3333333333333222211111111 112222222
Q ss_pred ----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------------eEEEEEechhHHHHH
Q psy17031 318 ----EKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK--------------------LYTFVLCWSPYIVFD 373 (419)
Q Consensus 318 ----~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~--------------------~~~f~~cw~P~~v~~ 373 (419)
-+...+.....................++..+++.+++.++ ..+-.+|-.|..+..
T Consensus 181 nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~ 260 (303)
T PF10327_consen 181 NFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQTYQKHKEAVRSLIAQFATSSICILPPFIFV 260 (303)
T ss_pred CEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11112222333445555667777888888889888766443 355566668888876
Q ss_pred HHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccC
Q psy17031 374 LLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 418 (419)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~ 418 (419)
....... ++. ..+.+........+|.+|=++-.+.++.|||
T Consensus 261 ~~~~~~~-~~~---q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~ 301 (303)
T PF10327_consen 261 VVVIFEF-EDA---QVISEICLAIFSSHSSVNMIVLIITTPPYRK 301 (303)
T ss_pred hhheecC-CCc---HHHHHHHHHHHHHhhHhhheeeeEcCcchhh
Confidence 6644442 222 2345555566669999999999999999998
No 32
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.36 E-value=3.8e-05 Score=74.29 Aligned_cols=252 Identities=16% Similarity=0.185 Sum_probs=138.8
Q ss_pred HHHHHHHHhhhheeeEEeEeccccc-chhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhh
Q psy17031 102 WALFILIVLGNSAVIFTLKFGVKRR-SRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYS 180 (419)
Q Consensus 102 ~~i~~vgl~gN~lvl~~i~~~~~~~-~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 180 (419)
.+..+++++.|.+.++.+.++.+.+ ..-.+++...|+.|+..++......-.....+.
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~--------------------- 64 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGS--------------------- 64 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCC---------------------
Confidence 3567788999999998776554333 333355667888888887755433221111000
Q ss_pred hhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceeccccccccchhhhHHHHHHHHHHHHHHHHH
Q psy17031 181 STYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALS 260 (419)
Q Consensus 181 s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~C~~~~~~~~~~~~~s~~~l~~i~ 260 (419)
+.......+++..+.............+-..+...++.--
T Consensus 65 ----------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~y~~~f~~~~~llaihF 104 (307)
T PF10326_consen 65 ----------------------------------------SFVVFSDSGPFFLSKSIGQILLAIYCGCFGMSFSLLAIHF 104 (307)
T ss_pred ----------------------------------------eeEEEeecccccccchheeehhhhhhhhHHHHHHHHHhHh
Confidence 0001111222333344444444455556667777778888
Q ss_pred Hhhheeeeccccccc-cchhhhHHHHHHHHHHHHHHHHHHHhheeEee-c-------------CCCce------ee-ccc
Q psy17031 261 IDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLFHVRLV-Q-------------GTSQC------WI-EFE 318 (419)
Q Consensus 261 ~~Ry~~i~~p~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~-~-------------~~~~C------~~-~~~ 318 (419)
+.||.++++|.+-+. +.++........-+.+..............+. + +.... .. ..+
T Consensus 105 iYRY~av~~~~~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y~~~i~~~~y~~~~~y~~~~ 184 (307)
T PF10326_consen 105 IYRYWAVCRPKKLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENYGLDIDEIPYVGFVYYPKDE 184 (307)
T ss_pred hhheeeeccchhhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccccCCCccceeEEEEEEeeecc
Confidence 899999999986554 33333332221111111111111011111000 0 00000 01 011
Q ss_pred cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------------eEEEEEechhHHHHH
Q psy17031 319 KP----WQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK---------------------LYTFVLCWSPYIVFD 373 (419)
Q Consensus 319 ~~----~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~---------------------~~~f~~cw~P~~v~~ 373 (419)
++ ................+++.++++|-.++++++++.++ .+-.++...|..+..
T Consensus 185 nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~ 264 (307)
T PF10326_consen 185 NGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIMSSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVF 264 (307)
T ss_pred CCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccccChhhHHHHHHHHHHHHHHhhhhheeeecchhhee
Confidence 11 11222333345566778899999999999999965332 567778889998887
Q ss_pred HHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 374 LLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.....+-+.+. ..........+.+++||++-.+.-||+||+
T Consensus 265 ~~p~~~i~~~~-----~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~ 305 (307)
T PF10326_consen 265 ILPFFGIDLGF-----FSNIISILISLYPAIDPLPVIFIIKDYRKA 305 (307)
T ss_pred eeeccCCCCCc-----cccHhhhhEEEEeehhhheeeEeeHHHHHh
Confidence 77665532221 223344556699999999999999999985
No 33
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=96.96 E-value=0.0028 Score=60.08 Aligned_cols=180 Identities=14% Similarity=0.175 Sum_probs=95.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccc-cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCcee
Q psy17031 236 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCW 314 (419)
Q Consensus 236 ~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~ 314 (419)
...+...++......+....-..++++|+.++..|.++++ =+|.....+.++.+.++....+...........++..-.
T Consensus 79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~ 158 (275)
T PF02118_consen 79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSY 158 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHccccEEEEECCceEE
Confidence 4455666777788889999999999999999999999888 223333455555656655444443332222222222221
Q ss_pred eccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------------eEEEEEechhHHHHHHH---HHhc
Q psy17031 315 IEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK------------LYTFVLCWSPYIVFDLL---QVYG 379 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~------------~~~f~~cw~P~~v~~~~---~~~~ 379 (419)
...+... ...........+.+..++.++++....+++++.++ ...-.++.....+.... ....
T Consensus 159 ~~~~~~~--~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~~~~ 236 (275)
T PF02118_consen 159 SYNDTVS--WASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRIKSVERNLTIISFIISFVQLLIAIWQIINSFAFFF 236 (275)
T ss_pred EEEeccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111 11111233344455555666677777777765432 11111122222222222 1122
Q ss_pred CcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 380 YIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
...+ .............-.-+...|++-...+++.||+
T Consensus 237 ~~~~--~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 237 DFLP--ISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred cccc--HHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 1111 1222222333333455677899999999999985
No 34
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.86 E-value=0.00044 Score=65.76 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=34.4
Q ss_pred HHHHHHhccceEEEEEEeceeecccceehhhHHHHHh
Q psy17031 10 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAV 46 (419)
Q Consensus 10 ~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~ 46 (419)
+.++|++-|..+++.+.+.+++|++.+..-.|.|++|
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n 39 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIAN 39 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996
No 35
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=96.46 E-value=0.11 Score=49.63 Aligned_cols=252 Identities=11% Similarity=0.025 Sum_probs=131.7
Q ss_pred HHHHHHHHhhhheeeEEeEeccccc-chhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhh
Q psy17031 102 WALFILIVLGNSAVIFTLKFGVKRR-SRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYS 180 (419)
Q Consensus 102 ~~i~~vgl~gN~lvl~~i~~~~~~~-~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 180 (419)
-+.++++.+.|.+.++.+..+|+.+ ..-.+++.--|+-|++.++.-...-+-- .+...|-...-
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~v-------h~yry~F~~fi-------- 76 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICV-------HGYRYAFVVFI-------- 76 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhhee-------eccceEEEEEE--------
Confidence 3677888999999999888877655 4455778899999999887554222110 01112222111
Q ss_pred hhhHHHHHhhhhhhhhccCcccccccchhcccccceeeeeeeeeeecceecccccc-ccchhhhHHHHHHHHHHHHHHHH
Q psy17031 181 STYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNT-ACKVVRYSQAVVTYSSTYVLVAL 259 (419)
Q Consensus 181 s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~C~~~~~~~~~~~~~s~~~l~~i 259 (419)
.++|-.... .=.......-....++-..|..-
T Consensus 77 -----------------------------------------------~dG~F~~~s~l~~~~ls~RCsfIs~sYaIL~~H 109 (310)
T PF10319_consen 77 -----------------------------------------------SDGPFFEKSELGQHLLSIRCSFISGSYAILHIH 109 (310)
T ss_pred -----------------------------------------------cCCcCcCcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111211111 00111112223344566677788
Q ss_pred HHhhheeeeccccccccchhhhHHHHHHHH-HHHHHHH-H-HHHhheeEee-----------c--CC-----Cceeecc-
Q psy17031 260 SIDRYYAIKYPMNFCGSWRRARWLVGIAWL-ISFILSI-P-IAVLFHVRLV-----------Q--GT-----SQCWIEF- 317 (419)
Q Consensus 260 ~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~-~s~~~~~-p-~~~~~~~~~~-----------~--~~-----~~C~~~~- 317 (419)
-+.||+++++|...++.-+.-+....+.+. .=...+. . ........+. . +. -.+.++.
T Consensus 110 FvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~e~YG~Ds~diNml~alY~ea 189 (310)
T PF10319_consen 110 FVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFREVYGVDSMDINMLIALYNEA 189 (310)
T ss_pred HHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCCCCcCceEeeeeccC
Confidence 889999999996544422111111111111 1111111 1 1111111110 0 00 0111111
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------------------eEEEEEechhHHHHHHH
Q psy17031 318 EKP-WQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK---------------------LYTFVLCWSPYIVFDLL 375 (419)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~---------------------~~~f~~cw~P~~v~~~~ 375 (419)
+++ .......+....+.-.....+..+.=.+|.+++++.+. +.--+++..|-.+.+-.
T Consensus 190 S~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~ 269 (310)
T PF10319_consen 190 SDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYG 269 (310)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhH
Confidence 111 12233444444455555566666666788888865443 34457888999998877
Q ss_pred HHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 376 QVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
...+.+- ..+...........=+++||+.-.+.-+.||||
T Consensus 270 pif~i~~----~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 270 PIFGIDL----GRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHcCCh----hHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 6766322 223333333333467889999999999999997
No 36
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.38 E-value=0.045 Score=53.26 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceee
Q psy17031 236 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWI 315 (419)
Q Consensus 236 ~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~ 315 (419)
..|........++-.++.+-..+.++|-|+.+.+--. +.+...-=.+.|..+.++..-.... .+..+...|..
T Consensus 114 afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag----~~~~~lYH~~aWgl~~lL~~~Gl~~---Ly~Ps~~~Ce~ 186 (405)
T PF02101_consen 114 AFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG----RSTIWLYHMMAWGLPALLCAEGLAM---LYYPSISRCES 186 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC----CcchhHHHHHHHHHHHHHHHhccce---eecCCHHhhhh
Confidence 5677665555567778888889999999987754321 1222334467888887776433222 22233344532
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------------------------eEEEEEechhHHH
Q psy17031 316 EFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK------------------------LYTFVLCWSPYIV 371 (419)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~------------------------~~~f~~cw~P~~v 371 (419)
.. ......|... -+-.++.++.-=+.|.+..+++.+.-| .++|.+||+|..+
T Consensus 187 ~l--~~alphYvtt--Y~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNII 262 (405)
T PF02101_consen 187 GL--EHALPHYVTT--YIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNII 262 (405)
T ss_pred hh--hhcchhHHHH--HHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 11 1111111111 111112222222345555444432111 6999999999999
Q ss_pred HHHHHHhc
Q psy17031 372 FDLLQVYG 379 (419)
Q Consensus 372 ~~~~~~~~ 379 (419)
-.++..+.
T Consensus 263 Ng~LL~~l 270 (405)
T PF02101_consen 263 NGSLLFYL 270 (405)
T ss_pred hHHHHHHh
Confidence 98876553
No 37
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=95.96 E-value=0.14 Score=47.77 Aligned_cols=173 Identities=17% Similarity=0.230 Sum_probs=101.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCC-----Cc
Q psy17031 240 VVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGT-----SQ 312 (419)
Q Consensus 240 ~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~-----~~ 312 (419)
+..+...++.+.-.+.-..+|+.|........+..+ .+.-.+.....+|+++...........-..+++.. -.
T Consensus 92 ~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~ 171 (305)
T PF04789_consen 92 FMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLN 171 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEE
Confidence 345566778888889999999999887764333222 56677888899999998877654443322222211 23
Q ss_pred eeec-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCc-------------eEEEEEechhHHHHH
Q psy17031 313 CWIE-----FEKPWQWQLYMSLVALALFVIPAVIISICYILIITTI-WAKSK-------------LYTFVLCWSPYIVFD 373 (419)
Q Consensus 313 C~~~-----~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l-~~~~~-------------~~~f~~cw~P~~v~~ 373 (419)
|.-. -+.+.. ....-.++.+.+|..+.+ .|+.+.-++ +.++. +.+|++...+-.+..
T Consensus 172 C~~~~~~v~~~~P~~---IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~MKkssLnK~Ei~ILKQAifIFvlFQ~ss~VFl 247 (305)
T PF04789_consen 172 CETCNSVVDISPPRG---IQIIEIILQFGIPIFILV-IYIAIIIKIIKMKKSSLNKNEITILKQAIFIFVLFQASSCVFL 247 (305)
T ss_pred cCCCCeeEeeCCCCc---hhHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 122222 333444566777766544 444444433 32222 567777766665443
Q ss_pred HHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccC
Q psy17031 374 LLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 418 (419)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~ 418 (419)
.-+... -+...-..+..+.+.+-.+-.+.-|.-..+.++|.||
T Consensus 248 ~~qt~~--~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk 290 (305)
T PF04789_consen 248 LCQTFK--FNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRK 290 (305)
T ss_pred hheeee--ecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHH
Confidence 332222 1222223345566666667788999999999999987
No 38
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.69 E-value=0.0053 Score=57.05 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=0.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCceeec
Q psy17031 237 ACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIE 316 (419)
Q Consensus 237 ~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~C~~~ 316 (419)
.|...+....++..++..-..+.+++-|..+.++.+. .+++........|..+.+......... ....++..|..+
T Consensus 71 ~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~--~~~~~~~~~~~gwg~P~~iv~i~~~~~--~~~y~~~~CWl~ 146 (242)
T PF00002_consen 71 LCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS--SRRRFWWYYLIGWGIPALIVVISVAVN--SDGYGNDNCWLS 146 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc--cchhhheeeeeeecCcceeeeeeeeec--cccccccccccc
Confidence 4888888888888888888999999999988877332 244455566778998888776554444 223334567554
Q ss_pred c
Q psy17031 317 F 317 (419)
Q Consensus 317 ~ 317 (419)
.
T Consensus 147 ~ 147 (242)
T PF00002_consen 147 N 147 (242)
T ss_dssp -
T ss_pred C
Confidence 4
No 39
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.13 E-value=0.31 Score=47.63 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=36.1
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccc
Q psy17031 233 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG 275 (419)
Q Consensus 233 ~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~ 275 (419)
+.+..|........++.....+.-.++.+||-.|...|-.+++
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~ 138 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK 138 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4567888888888888889999999999999999988865544
No 40
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=93.94 E-value=0.89 Score=43.14 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHH
Q psy17031 101 LWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVW 154 (419)
Q Consensus 101 ~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~ 154 (419)
-.+........|...++.+..+|+.+++.-.++---.+.|.+.+....+...+.
T Consensus 12 ~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~ 65 (273)
T PF10316_consen 12 GIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYY 65 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHH
Confidence 335666778889988887776666444444555567889999998877655544
No 41
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=91.86 E-value=1.2 Score=42.91 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=110.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccc-cchhhhHHHHHHHHHHHHHHHHHHHhhee-EeecCC---
Q psy17031 236 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLFHV-RLVQGT--- 310 (419)
Q Consensus 236 ~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~-t~~~~~~~i~~~W~~s~~~~~p~~~~~~~-~~~~~~--- 310 (419)
..=+...+......+.+.+.....+.-|-..+..|.++++ .++-......++.+.+++.+.|.....+. .+.+..
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~f 180 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPF 180 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCC
Confidence 3445667788889999999999999999999999987766 44445667778888888888776664442 222111
Q ss_pred CceeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-----------------eEEEEEechhHHHH
Q psy17031 311 SQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKS-K-----------------LYTFVLCWSPYIVF 372 (419)
Q Consensus 311 ~~C~~~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~-~-----------------~~~f~~cw~P~~v~ 372 (419)
+.-......+...... ..........-.+.+++.+..+++|+||.+ + .++-+..-.|+..-
T Consensus 181 GAI~I~~~~~~~~~~~-~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~i~n 259 (307)
T PF10322_consen 181 GAIIITSTGSWFNIRN-SIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPYITN 259 (307)
T ss_pred CEEEEEEEcccccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHHHHH
Confidence 1111111111111111 222333344556667777888888888755 2 35555566787776
Q ss_pred HHHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccCC
Q psy17031 373 DLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 419 (419)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~~ 419 (419)
.+........+ +....+..+--...-+..++=|+++.+.++=|||+
T Consensus 260 ~i~~i~~~~~~-~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkkk 305 (307)
T PF10322_consen 260 GIISISFLFFP-SYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKKK 305 (307)
T ss_pred HHHHHHHhcCc-hHHHHHHHHhhhhhccceeEEEEEeeecChhhcCC
Confidence 66655432211 11111222223344467778899999999999985
No 42
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=90.85 E-value=1.8 Score=41.49 Aligned_cols=176 Identities=18% Similarity=0.255 Sum_probs=84.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeec-----CCCc
Q psy17031 238 CKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQ-----GTSQ 312 (419)
Q Consensus 238 C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~-----~~~~ 312 (419)
...+.+...............+--.||.++....+...+++........-.+.+.....|......+++.. +...
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~p 164 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKYP 164 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhcc
Confidence 34444555556666666777778889999986654222233333344555566666666665533321110 1122
Q ss_pred eeec--cc-cc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------------eEEEE
Q psy17031 313 CWIE--FE-KP----WQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK----------------------LYTFV 363 (419)
Q Consensus 313 C~~~--~~-~~----~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l~~~~~----------------------~~~f~ 363 (419)
|..+ +. ++ ..+..+..........+...-+...-..+.+.++++.+ .+-+.
T Consensus 165 c~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~S~~T~k~Qkkfl~~l~iQ~~ip~~ 244 (302)
T PF10318_consen 165 CPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKTMSKKTRKMQKKFLIALIIQVLIPFI 244 (302)
T ss_pred CCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 11 00 00011212222222222222333333333333333321 23344
Q ss_pred EechhHHHHHHHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCccC
Q psy17031 364 LCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 418 (419)
Q Consensus 364 ~cw~P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR~ 418 (419)
+.-.|..........+... + ...++...+...+...+-+...+.++.+||
T Consensus 245 ~l~~P~~~~~~~~~~~~~~--q---~~~n~~~~~~~~HG~~sti~mi~~~~pYR~ 294 (302)
T PF10318_consen 245 FLFIPLIYFIISIIFGYYN--Q---ALNNISFIIISLHGIASTIVMILVHKPYRK 294 (302)
T ss_pred HHhhhHHHHHHHHhccccc--c---ccchHHHHHHHhccHHHHHHHhhccHHHHH
Confidence 4456877766554444221 1 233344455568888888888888988886
No 43
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=89.54 E-value=0.13 Score=49.80 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=33.9
Q ss_pred HHHHHHhccceEEEEEEeceeecccceehhhHHHHHhhhhcCCCCC
Q psy17031 10 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYP 55 (419)
Q Consensus 10 ~~~~~~~gN~~v~~~~~~~~~~~~~~~~~i~nLa~a~~~~~~~~~~ 55 (419)
+.++|+++|..-+.++.|+.-+.+++|.++...|++|........+
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~ 51 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILI 51 (318)
T ss_pred EeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999888886655555569999999999998444443333
No 44
>KOG4193|consensus
Probab=87.69 E-value=0.83 Score=48.23 Aligned_cols=85 Identities=9% Similarity=0.120 Sum_probs=55.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeE--eecCCCcee
Q psy17031 237 ACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVR--LVQGTSQCW 314 (419)
Q Consensus 237 ~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~--~~~~~~~C~ 314 (419)
.|....++..++..+...-+...++.-|...+.-.+.+ ..++........|...+++........... ++.....|+
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~~-~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CW 463 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRSR-PRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCW 463 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceE
Confidence 69999999999999999999999999888444433222 233333443588988887765443332222 133345588
Q ss_pred eccccchh
Q psy17031 315 IEFEKPWQ 322 (419)
Q Consensus 315 ~~~~~~~~ 322 (419)
.+.++...
T Consensus 464 l~~~~~~~ 471 (610)
T KOG4193|consen 464 LDTQNGFI 471 (610)
T ss_pred EecCCceE
Confidence 87666533
No 45
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=87.40 E-value=20 Score=34.98 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=74.2
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCC
Q psy17031 232 KAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTS 311 (419)
Q Consensus 232 ~~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~ 311 (419)
..+...|.....+.+++.+++..--+.+++.-+++....-....-.++....=.+.|.++.+..+..+...+...++-.+
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltG 167 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTG 167 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhcccccccccc
Confidence 34568999999999999999999999999998887765544333445566667899999999998888887777777778
Q ss_pred ceeeccccchhHHHHH
Q psy17031 312 QCWIEFEKPWQWQLYM 327 (419)
Q Consensus 312 ~C~~~~~~~~~~~~~~ 327 (419)
.|.....+......+.
T Consensus 168 iC~Vg~~~~~~l~~fv 183 (328)
T PF01534_consen 168 ICFVGNQNPSALRGFV 183 (328)
T ss_pred eeEEeCCCHHHHhHHH
Confidence 8998877765443333
No 46
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=85.04 E-value=4.7 Score=38.44 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=66.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhHHHHHHhh----cccccccccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccCc
Q psy17031 125 RRSRMNFFIMHLAVADLCVGVLSVLTDIVWRS----SVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200 (419)
Q Consensus 125 ~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~----~~~~~~~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~ 200 (419)
.+++.+-.+.+-+++|++..+........... .-....++..-++..+..+..........+.+|+.||.||++|.
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~ 108 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPT 108 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEeec
Confidence 46888888899999999987766543332221 00011111223444455566667777889999999999999999
Q ss_pred -cccccc-chhcccccceeeeeeeeee
Q psy17031 201 -NFCGSC-KYIRDLCVGVLSVLTDIVW 225 (419)
Q Consensus 201 -~~~~~~-~~~~~~~~~~~~~~~~~~~ 225 (419)
++.+.+ +.....++.+-|..+.+..
T Consensus 109 ~~~~~~~~~~~~~~i~~i~wi~p~li~ 135 (283)
T PF10323_consen 109 SRHTKFWQPAKIWIIILIQWIPPLLIS 135 (283)
T ss_pred HHHhhhccccchhheeeeeehhhhhhe
Confidence 665554 4566677788887764443
No 47
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=83.64 E-value=11 Score=34.65 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHH
Q psy17031 236 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWL 283 (419)
Q Consensus 236 ~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~ 283 (419)
..++..-....+....+++....+++||+.|..+.-+|++++...+-+
T Consensus 83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LGPi 130 (236)
T PF02175_consen 83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLGPI 130 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeehhH
Confidence 444555555667788889999999999999999988888755544433
No 48
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=81.54 E-value=28 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=26.9
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhheeeecccc
Q psy17031 234 GNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 272 (419)
Q Consensus 234 ~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~ 272 (419)
+-..|.+..-.......+.-...+++|++||..+..-.|
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 345677665555555555556677899999999987554
No 49
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=76.52 E-value=12 Score=37.17 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchh
Q psy17031 241 VRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRR 279 (419)
Q Consensus 241 ~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~ 279 (419)
.+++..-........+.++++||..|....-.|.+++|+
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~ 164 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRR 164 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 345555566777899999999999999999888885443
No 50
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=64.27 E-value=60 Score=30.97 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=45.2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccc---cc-cchhhhHHHHHHHHHHHHHHHHHHH-hheeEeecCC
Q psy17031 236 TACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF---CG-SWRRARWLVGIAWLISFILSIPIAV-LFHVRLVQGT 310 (419)
Q Consensus 236 ~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~---~~-t~~~~~~~i~~~W~~s~~~~~p~~~-~~~~~~~~~~ 310 (419)
..|.+..-+......+-.....+++-.-|. |..+.+. ++ ++|+...=..+.+...++....... -.+....-+.
T Consensus 57 ~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~-I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~ 135 (283)
T PF02076_consen 57 VWCDISTKLIIGSSVGIPAASLCIMRRLYR-IASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVED 135 (283)
T ss_pred eeeeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecc
Confidence 789988777666666554444444443332 3322221 11 4555555566777777666554443 3333444566
Q ss_pred Cceeeccccc
Q psy17031 311 SQCWIEFEKP 320 (419)
Q Consensus 311 ~~C~~~~~~~ 320 (419)
..|......+
T Consensus 136 ~GC~~~~~~s 145 (283)
T PF02076_consen 136 VGCYPAIYPS 145 (283)
T ss_pred cCCccCCCCC
Confidence 7776554444
No 51
>KOG4564|consensus
Probab=61.91 E-value=1.1e+02 Score=31.49 Aligned_cols=82 Identities=11% Similarity=0.172 Sum_probs=55.5
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhheeeeccccccccchhhhHHHHHHHHHHHHHHHHHHHhheeEeecCCCc
Q psy17031 233 AGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQ 312 (419)
Q Consensus 233 ~~~~~C~~~~~~~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~ 312 (419)
.+...|+....+...+..+..+-+.+=.+.-|..+.--... .+++-..-..+.|-...++..+..... ...++..
T Consensus 224 ~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s--er~~~~~y~~iGWG~P~v~v~~Wai~r---~~~~d~~ 298 (473)
T KOG4564|consen 224 SNPVGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS--ERRYFWLYLLIGWGVPAVFVVVWAIVR---LYLEDTG 298 (473)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc--CccHHHHHHHHhhCCcHHHhhhHHhHh---eeecccc
Confidence 45578999888888888888887777777666544432221 245566667889999988888776655 3334447
Q ss_pred eeecccc
Q psy17031 313 CWIEFEK 319 (419)
Q Consensus 313 C~~~~~~ 319 (419)
|......
T Consensus 299 CW~~~~~ 305 (473)
T KOG4564|consen 299 CWDSNDT 305 (473)
T ss_pred ccccCCC
Confidence 8766554
No 52
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=61.47 E-value=0.26 Score=44.51 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=65.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhhHHHHHhhhhhhhhccC
Q psy17031 124 KRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 199 (419)
Q Consensus 124 ~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p 199 (419)
++++-.+.++.||.++|++.++..+.....+...+.-..++..|..|+++......++.+...+|++.-|+.|.+|
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445556699999999999999888766666555555567899999999999999999999999999999999999
No 53
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=56.39 E-value=5.3 Score=29.95 Aligned_cols=56 Identities=7% Similarity=0.243 Sum_probs=38.7
Q ss_pred EEEEEech-hHHHHHHHHHhcCcCCCchhhHHHHHHHHHhccccccchhhhhcccCCcc
Q psy17031 360 YTFVLCWS-PYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNN 417 (419)
Q Consensus 360 ~~f~~cw~-P~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY~~~~~~fR 417 (419)
++|+++|+ |+..-..-...+. ......++..+...+..+|..+|-++|+++.+..|
T Consensus 19 ~~Yi~lwlfP~~~~~~~~~~~~--~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw~ 75 (76)
T PF11970_consen 19 LVYIVLWLFPFAAHRMQYMYEI--GHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPWR 75 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHccCHHHhhheeeecccCC
Confidence 34778899 8776655544332 12222345666777778999999999999887766
No 54
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=48.39 E-value=55 Score=28.10 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhheeeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHH
Q psy17031 245 QAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAV 300 (419)
Q Consensus 245 ~~~~~~~s~~~l~~i~~~Ry~~i~~p~~~~~--t~~~~~~~i~~~W~~s~~~~~p~~~ 300 (419)
..++-....+.-..|+++|-..+.+|.+... +.+|...-+.+..+..+...+-+.+
T Consensus 51 ~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 51 GTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred ehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 3445556777788899999999999998854 8888888887777776665544333
No 55
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=44.25 E-value=55 Score=30.52 Aligned_cols=114 Identities=9% Similarity=0.054 Sum_probs=67.6
Q ss_pred HHHHHhhhheeeEEeEeccc---ccchhhHHHHHHHHHHHHHHHHhhHHH-HHHh-------hcccccccccceeeeeee
Q psy17031 105 FILIVLGNSAVIFTLKFGVK---RRSRMNFFIMHLAVADLCVGVLSVLTD-IVWR-------SSVTWKAGNTACKVVRYS 173 (419)
Q Consensus 105 ~~vgl~gN~lvl~~i~~~~~---~~~~~~~~i~~La~aDll~~~~~~p~~-~~~~-------~~~~~~~~~~~C~~~~~~ 173 (419)
++.+++.+..+++.+.++++ .+++.+.+..-=++.|++.-+...+.. .... ...-.+..+...+...++
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 87 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL 87 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence 44555556666666655554 255555555554555555544333221 1111 000001123345566667
Q ss_pred ceeehhhhhhHHHHHhhhhhhhhccCcccccccchhcccccceee
Q psy17031 174 QAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLS 218 (419)
Q Consensus 174 ~~~~~~~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~~~~~~~~ 218 (419)
.+.+..+-...-..|+++|+-++..|.+|.+.|++....+..++.
T Consensus 88 ~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~ 132 (275)
T PF02118_consen 88 QYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIF 132 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeee
Confidence 777888888899999999999999999998888876654444433
No 56
>PF13853 7tm_4: Olfactory receptor
Probab=42.03 E-value=3.2 Score=35.27 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeEeec---CCCceee-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17031 282 WLVGIAWLISFILSIPIAVLFHVRLVQ---GTSQCWI-----EFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTI 353 (419)
Q Consensus 282 ~~i~~~W~~s~~~~~p~~~~~~~~~~~---~~~~C~~-----~~~~~~~~~~~~~~~~~~~~~vp~~ii~~~y~~i~~~l 353 (419)
.+.+..|..++...++........... ++..|.. -.++...++.+...........|+.+++.+|.+|.+.+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 456778888888877766543322111 2222321 12444455555555666667899999999999999977
Q ss_pred Hhc
Q psy17031 354 WAK 356 (419)
Q Consensus 354 ~~~ 356 (419)
.|.
T Consensus 85 lki 87 (144)
T PF13853_consen 85 LKI 87 (144)
T ss_pred hcc
Confidence 763
No 57
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=41.65 E-value=5.4 Score=38.46 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHhccceEEEEEEe---ceeecccceehhhHHHHHh
Q psy17031 3 QFVILWALFILIVLGNSAVIFTLKF---GVKRRSRMNFFIMHLAVAV 46 (419)
Q Consensus 3 ~~~~~~~~~~~~~~gN~~v~~~~~~---~~~~~~~~~~~i~nLa~a~ 46 (419)
..++....+++|++||+.++.+-.. ++|+-+|.|..+.+||++.
T Consensus 9 ~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr 55 (303)
T PF05296_consen 9 FLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISR 55 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHH
Confidence 3566788899999999998888765 4444579999999999995
No 58
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=34.96 E-value=14 Score=35.00 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.9
Q ss_pred hhhhHHHHHhhhhhhhhccCcccccccchhcc
Q psy17031 180 SSTYVLVALSIDRYYAIKYPMNFCGSCKYIRD 211 (419)
Q Consensus 180 ~s~~~L~~is~dRy~aI~~p~~~~~~~~~~~~ 211 (419)
........||+||..|+..|+.|++..++.+.
T Consensus 94 iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~ 125 (273)
T PF10316_consen 94 IRSILALIIALDRVFAVYFPIFYHNYRKKIPN 125 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCccccH
Confidence 34456678999999999999999555554443
No 59
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=32.76 E-value=22 Score=32.55 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHhhhheeeEEeEecccccchhhHHHHHHHHHHHHHHHHhhHHHHHHhhcccccccccceeeeeeeceeehhhhhhHHH
Q psy17031 107 LIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLV 186 (419)
Q Consensus 107 vgl~gN~lvl~~i~~~~~~~~~~~~~i~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~L~ 186 (419)
+++++-.+.+......|++|+..+....||++++++..+........... ..-..++..|.....+.+.+..++..=+.
T Consensus 13 ~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~-~~~~~~~~~C~~~a~~~hy~~la~f~Wm~ 91 (242)
T PF00002_consen 13 LSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFS-PISTTNHCLCRAIAILLHYFFLASFFWML 91 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccc-cccccccccchhhhhHhHHHHHHHHHHHH
Confidence 33333333333333335556555666678888877766544332111110 00001123499999999999998888899
Q ss_pred HHhhhhhhhhccCc
Q psy17031 187 ALSIDRYYAIKYPM 200 (419)
Q Consensus 187 ~is~dRy~aI~~p~ 200 (419)
++++|-|..+.++.
T Consensus 92 ~~~~~l~~~~~~~~ 105 (242)
T PF00002_consen 92 VEAFYLYRLLVKVF 105 (242)
T ss_dssp --------------
T ss_pred HHHHHhheeEEEee
Confidence 99999999998873
No 60
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=29.23 E-value=1.4e+02 Score=29.00 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhhheeeEEeEecccccchhh-HHHHHHHHHHHHHHHHhh--HHHHHHh---hc--ccccccccce
Q psy17031 96 EQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMN-FFIMHLAVADLCVGVLSV--LTDIVWR---SS--VTWKAGNTAC 167 (419)
Q Consensus 96 ~~~~~~~~i~~vgl~gN~lvl~~i~~~~~~~~~~~-~~i~~La~aDll~~~~~~--p~~~~~~---~~--~~~~~~~~~C 167 (419)
....+..++.++++++....+..+.++.-.++.+. .++.+|..+++=-..... ...++.. .+ -+..+.+..|
T Consensus 22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC 101 (328)
T PF02117_consen 22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSEC 101 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCce
Confidence 33445556667777776666655555444444444 455677666643322211 1111111 11 1345556778
Q ss_pred eeeeeeceeehhhhhhHHHHHhhhhhhhhccCccc
Q psy17031 168 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202 (419)
Q Consensus 168 ~~~~~~~~~~~~~s~~~L~~is~dRy~aI~~p~~~ 202 (419)
..............++.=.++++||-.|-..|-.+
T Consensus 102 ~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 102 FPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 88888888888888889999999999999888444
Done!