RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17031
(419 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 105 bits (263), Expect = 6e-26
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL + + + W G+ CK+V + V Y+S +L A+SIDRY AI +P
Sbjct: 24 DLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASILLLTAISIDRYLAIVHP 83
Query: 271 M--NFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQ--CWIEFEKPWQWQLY 326
+ + RRA+ L+ + W+++ +LS+P + +R V+ + C I+F + + Y
Sbjct: 84 LRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEESTKRSY 143
Query: 327 MSLVALALFVIPAVIISICYILIITTIWAKSKLY-------------------------T 361
L L FV+P ++I +CY LI+ T+ +++
Sbjct: 144 TLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVV 203
Query: 362 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 409
FVLCW PY + LL + + + LA +NS NPIIY
Sbjct: 204 FVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
Score = 63.9 bits (156), Expect = 1e-11
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 124 KRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTY 183
K R+ N F+++LAVADL + + + W G+ CK+V + V Y+S
Sbjct: 8 KLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYASIL 67
Query: 184 VLVALSIDRYYAIKYPMN 201
+L A+SIDRY AI +P+
Sbjct: 68 LLTAISIDRYLAIVHPLR 85
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 66.3 bits (162), Expect = 4e-12
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 36/209 (17%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM--NFCGSWRRARWLVGIAW 288
W G ACK+V + Y+S + +S+DRY AI +P+ N + + + + W
Sbjct: 104 WSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIW 163
Query: 289 LISFILSIPIAVLFHVRLVQGTSQCWIEF-EKPWQWQLYMSLVALAL-FVIPAVIISICY 346
+IS I + PI ++ + T C + + K W+L+++ + +IP I+ CY
Sbjct: 164 IISIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCY 223
Query: 347 ILIITTIWAKSK--------------LYTFVLCWSPYIV------------FDLLQVYGY 380
I+ T+ +K + FV+ W P+ V + Y
Sbjct: 224 SKILITLKGINKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKY 283
Query: 381 IPRTQNYIAVATLIQSLAPLNSAANPIIY 409
I Y T + ++ + NP+IY
Sbjct: 284 I----QYALHVT--EIISLSHCCINPLIY 306
Score = 47.1 bits (112), Expect = 8e-06
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 92 KLNTEQFVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTD 151
+T V+ +F ++GN VI+ L K ++ M+ ++++LAV+DL + V+++
Sbjct: 38 TNSTILIVVYSTIFFFGLVGNIIVIYVL-TKTKIKTPMDIYLLNLAVSDL-LFVMTLPFQ 95
Query: 152 IVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRD 211
I + W G ACK+V + Y+S + +S+DRY AI +P K +
Sbjct: 96 IYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHP------VKSNKI 149
Query: 212 LCVGVLSVLTDIVW 225
V +++ ++W
Sbjct: 150 NTVKYGYIVSLVIW 163
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 52.3 bits (125), Expect = 2e-07
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 104 LFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAG 163
+FIL + GN+A+I L F K ++ + +I +LA++DL + I++ W G
Sbjct: 108 IFILGLFGNAAIIMIL-FCKKIKTITDIYIFNLAISDLIFVI--DFPFIIYNEFDQWIFG 164
Query: 164 NTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNF 202
+ CKV+ S + +S+ +++ +SIDRY+AI YP++F
Sbjct: 165 DFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISF 203
Score = 46.2 bits (109), Expect = 2e-05
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 208 YIRDLCVGVLSVLTD---IVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRY 264
YI +L + L + D I++ W G+ CKV+ S + +S+ +++ +SIDRY
Sbjct: 135 YIFNLAISDLIFVIDFPFIIYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRY 194
Query: 265 YAIKYPMNFCG--SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQ 322
+AI YP++F ++ L I+W++S I++ P +F + ++Q E +Q
Sbjct: 195 FAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQ 254
Query: 323 WQLY-------MSLVALAL--------FVIPAVIISICYILII 350
L +S + L IP +I + CYI II
Sbjct: 255 CTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKII 297
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 41.0 bits (96), Expect = 8e-04
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSWRRARWLVGIA-WL 289
W G CK+V V +S+ + + +SIDRY + L+ +A W+
Sbjct: 91 WIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWV 150
Query: 290 ISFILSIPIAVLFHVRLVQGTSQC-WIEFEKPWQWQLYMSL-VALALFVIPAVIISICYI 347
S ILS+P VL++V QC + ++ + + W + + + + VIP +I+ CY
Sbjct: 151 CSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYS 210
Query: 348 LIITTI 353
I+ T+
Sbjct: 211 KILYTL 216
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 31.7 bits (72), Expect = 0.80
Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 38/206 (18%)
Query: 238 CKVVRYSQAVVTYSSTYV----LVALSIDRYYAI-KYPMNFCGSWRRARWLVGIAWLISF 292
CK +++ Y+S V + ++ DRY I + ++R ++G+ W S
Sbjct: 105 CKFA----SLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASL 160
Query: 293 ILSIPIAVLFHVRLVQGTSQ-------CWIEFEKPWQWQLYMS---LVALALFVIPAVII 342
I S P V V C I F + + L+ L + P V++
Sbjct: 161 ICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMM 220
Query: 343 SICYILIITTIWAKSK-------------LYTFVLCWSPYIVFDLLQVYGYIP-----RT 384
+ Y T+ S L +F+ +P++ + Y +
Sbjct: 221 TWFYTFFYRTLKRASYKKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEH 280
Query: 385 QNYIAVATLIQSLAP-LNSAANPIIY 409
N + + L P L+ NPI+Y
Sbjct: 281 INLRDAVSTLSRLVPNLHCLLNPILY 306
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 31.1 bits (70), Expect = 1.1
Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 23/159 (14%)
Query: 284 VGIAWLISFILSIPIAVLFHVRLVQGT-SQCWIEFEKPWQWQLYMSLVALALF---VIPA 339
+GI +L S + +IP A+ +G +C I + L++++ + F + P
Sbjct: 151 IGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPT 210
Query: 340 VIISICYILIITTIWAKSK-------------LYTFVLCWSPYIVFDLLQV-YGYIPRTQ 385
+I S Y++ + A ++ + +F+ P I + ++ + YI
Sbjct: 211 MIFSFFYVIFCKALHALTEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNS 270
Query: 386 NY----IAVATLIQSLAP-LNSAANPIIYCIFRTGNNNR 419
+ + +I L P ++ +NP++Y R
Sbjct: 271 CFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR 309
>gnl|CDD|180596 PRK06505, PRK06505, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 271
Score = 30.1 bits (68), Expect = 1.9
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 18 NSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSAR----NYPP--THASASLSGASASLS 71
+ + TL +G R N+ +M +A A S R +Y P +A +G +L+
Sbjct: 137 DGGSMLTLTYGGSTRVMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLA 196
Query: 72 GAGKSQQDAMLTW----SPIR 88
GAG A+ ++ SP+R
Sbjct: 197 GAGIGDARAIFSYQQRNSPLR 217
>gnl|CDD|224098 COG1177, PotC, ABC-type spermidine/putrescine transport system,
permease component II [Amino acid transport and
metabolism].
Length = 267
Score = 29.8 bits (68), Expect = 2.1
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 255 VLVALSI-DRYYAIKYPMNFCGSWRRARWLVGIAWLISFILSIPIAVLFH-VRLVQGTSQ 312
VLV S + +P F W A + L + S+ IA+L + + GT
Sbjct: 30 VLVLYSFNSSRLGLVFPPGFSLKWYGALFSDP-RLLSALWNSLLIALLSALLATLLGTLA 88
Query: 313 CWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSKLYTFVLCWSPYIVF 372
++ + + + L V+P ++ I +L+ + +T VL +IVF
Sbjct: 89 ALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLA---HIVF 145
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 29.1 bits (66), Expect = 5.2
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 22/124 (17%)
Query: 240 VVRYSQAVVTYSSTYVLVALSIDRYYAIKYP-MNFCGSWRRAR------WLVGIAWLISF 292
++R+ + +Y+ + L + + + SWRR + +AW ++F
Sbjct: 16 LLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRRRSRLREMLLRILLAWTLTF 75
Query: 293 ILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITT 352
++ +A L E W L L+ALAL ++ +I+ + ++
Sbjct: 76 LILALLAFLLK-----------YGTEFSRLWLLLWFLLALALLLLGRLILRL----LLRR 120
Query: 353 IWAK 356
+ K
Sbjct: 121 LRRK 124
>gnl|CDD|222418 pfam13853, 7tm_4, Olfactory receptor. The members of this family
are transmembrane olfactory receptors.
Length = 142
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 324 QLYMSLVALALFVIPAVIISICYILIITTIW 354
+L + + + L V I I Y+ I +
Sbjct: 55 ELLLLVFSGFLGFGCFVFIVISYVQIFRAVL 85
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.138 0.440
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,148,766
Number of extensions: 2043551
Number of successful extensions: 3308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3269
Number of HSP's successfully gapped: 119
Length of query: 419
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 320
Effective length of database: 6,546,556
Effective search space: 2094897920
Effective search space used: 2094897920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (26.8 bits)