RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17031
(419 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 140 bits (354), Expect = 2e-37
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D V +L++ W GN CK V ++ST+ L A+S+DRY AI +P
Sbjct: 171 DTLV-LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP 229
Query: 271 MNF--CGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKP-WQWQLYM 327
+ + +A+ + W ++ ++ +P+A++ ++ +C +E P W
Sbjct: 230 IRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVF 289
Query: 328 SLVALAL-FVIPAVIISICYILIITTIWAKSKLY---------------------TFVLC 365
++ F++P ++IS+CY L+I + L FV C
Sbjct: 290 AICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGC 349
Query: 366 WSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
W+P VF L Q G P ++ +A+ +L +NS NPI+Y
Sbjct: 350 WTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFL 396
Score = 84.9 bits (210), Expect = 3e-18
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+ A+ + +LGN V++ + K ++ N +I +LA+AD V +L++
Sbjct: 130 GLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTDILLG 188
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
W GN CK V ++ST+ L A+S+DRY AI +P+
Sbjct: 189 FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPI 230
Score = 37.9 bits (88), Expect = 0.005
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ A+ + +LGN V++ + K ++ N +I +LA+A
Sbjct: 130 GLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALA 170
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 137 bits (348), Expect = 4e-37
Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 29/231 (12%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
+ + + + + + W G CK + ++S Y + A++ DRY AI +P
Sbjct: 78 EASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHP 137
Query: 271 MNFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQC---WIEFEKPWQWQLYM 327
+ S + ++ + W+++ +L+ P + C W E ++Y
Sbjct: 138 LQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYH 197
Query: 328 SLVALALFVIPAVIISICYILIITTIWAKSK-------------------------LYTF 362
V + ++ +P ++I Y ++ T+WA + TF
Sbjct: 198 ICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTF 257
Query: 363 VLCWSPYIVFDLLQVYGY-IPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
+CW P+ +F LL + + V I LA ++ NPIIYC
Sbjct: 258 AICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCL 308
Score = 30.8 bits (70), Expect = 0.71
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 9 ALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ + V+GN V++ + + R+ N+F+++LA A
Sbjct: 41 VIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFA 77
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 103 bits (259), Expect = 2e-24
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 230 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIA 287
TW GN CK+V ++S + L +S+DRY A+ +P+ + R A+ +
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCN 140
Query: 288 WLISFILSIPIAVLFHVRLVQGTSQCWIEFEKP-WQWQLYMSLVALAL-FVIPAVIISIC 345
W++S + +P+ + + QG+ C + F P W W+ + + F++P +II++C
Sbjct: 141 WILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVC 200
Query: 346 YILIITTIW-----------AKSKLYTFVLCWSPYIVFDLLQVYGYIP 382
Y L+I + + Y + + P
Sbjct: 201 YGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSP 248
Score = 80.8 bits (199), Expect = 1e-16
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+ + ++ + GN V++ + K ++ N +I +LA+AD ++ V
Sbjct: 22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPFQSVNYLMG 80
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
TW GN CK+V ++S + L +S+DRY A+ +P+
Sbjct: 81 TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPV 122
Score = 44.2 bits (104), Expect = 6e-05
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 361 TFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
F++CW+P ++ +++ IP T +L NS NP++Y
Sbjct: 391 VFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFL 442
Score = 40.8 bits (95), Expect = 6e-04
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ + ++ + GN V++ + K ++ N +I +LA+A
Sbjct: 22 ALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALA 62
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 99.4 bits (248), Expect = 2e-23
Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 29/229 (12%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
DL + T + + G T C + + + + + LV L+I+RY + P
Sbjct: 84 DLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP 143
Query: 271 M-NFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGT----SQCWIEFEKPWQWQL 325
M NF A V W+++ + P V + + +G + + +
Sbjct: 144 MSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNES 203
Query: 326 YMSLVALALFVIPAVIISICYILIITTIWAKSK----------------------LYTFV 363
++ + + F+IP ++I CY ++ T+ + + F+
Sbjct: 204 FVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFL 263
Query: 364 LCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
+CW PY A ++ NP+IY +
Sbjct: 264 ICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--FAKTSAVYNPVIYIMM 310
Score = 64.3 bits (157), Expect = 1e-11
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
++ L +L N ++ K R+ +N+ +++LAVADL + T +
Sbjct: 43 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG 102
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
+ G T C + + + + + LV L+I+RY + PM
Sbjct: 103 YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPM 144
Score = 30.8 bits (70), Expect = 0.77
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASA 61
++ L +L N ++ K R+ +N+ +++LAVA + + T ++
Sbjct: 43 AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTS 99
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 97.3 bits (242), Expect = 4e-22
Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 16/179 (8%)
Query: 231 WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAW 288
W GN CK V V YSS ++L +S+DRY AI + N + + W
Sbjct: 112 WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVW 171
Query: 289 LISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALAL-FVIPAVIISICYI 347
+ + +L+IP + +V C + W + + + ++P ++I CY
Sbjct: 172 IPALLLTIPDFIFANVSEADDRYICDRFYPNDL-WVVVFQFQHIMVGLILPGIVILSCYC 230
Query: 348 LIITTIWA------------KSKLYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLI 394
+II+ + + Y + + P +
Sbjct: 231 IIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKA 289
Score = 80.0 bits (197), Expect = 2e-16
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
I +F+ ++GN VI + + K RS + + +HL+VADL V+T W
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF----VITLPFWAVDA 108
Query: 159 T--WKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SCKYIRDLCV 214
W GN CK V V YSS ++L +S+DRY AI + N + + V
Sbjct: 109 VANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV 168
Query: 215 GV-----LSVLTDIVWRSSVTWKAGNTAC 238
GV L + D ++ +V+ C
Sbjct: 169 GVWIPALLLTIPDFIFA-NVSEADDRYIC 196
Score = 42.2 bits (99), Expect = 2e-04
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
I +F+ ++GN VI + + K RS + + +HL+VA
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVA 93
Score = 33.3 bits (76), Expect = 0.16
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 339 AVIISICYILIITTIWAKSK-------------LYTFVLCWSPY---IVFDLLQVYGYIP 382
A + + + + F CW PY I D + I
Sbjct: 386 AKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIK 445
Query: 383 RT---QNYIAVATLI-QSLAPLNSAANPIIYCIF 412
+ +N + I ++LA + NPI+Y
Sbjct: 446 QGCEFENTVHKWISITEALAFFHCCLNPILYAFL 479
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 87.3 bits (216), Expect = 6e-19
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 41/241 (17%)
Query: 211 DLCVGVLSVLTDIVWRS-SVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKY 269
D +++ + W G ACKV + + + S + +SIDRY I
Sbjct: 80 DFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGR 139
Query: 270 PM--NFCGSWRRARWLVGIAWLISFILSIPIAVLFHVRLVQG--TSQCWIEFEKPWQWQL 325
PM + S RRA ++ WL S + +I + ++G + + + +
Sbjct: 140 PMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRS 199
Query: 326 YMSLVALALFVIPAVIISICYILIITTIWAKSKLYT------------------------ 361
+ + + F P +II CY I+ ++ K
Sbjct: 200 NILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRL 259
Query: 362 ----------FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 411
F+L WSPY V LL +G + Y A ++ A ++ NP+IY +
Sbjct: 260 AKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVM--FAKASAIHNPMIYSV 317
Query: 412 F 412
Sbjct: 318 S 318
Score = 32.2 bits (73), Expect = 0.35
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLS 64
+ + I+ GN VI+ ++ N FI++LA + S N P +
Sbjct: 39 IFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL 98
Query: 65 G 65
Sbjct: 99 K 99
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 76.7 bits (188), Expect = 2e-15
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+ A+ +L +LGN V + + ++ N+F++ LA AD+ VGVL++ I S
Sbjct: 26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI--ST 83
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
+ A C + V+T SS + L+A++IDRY AI+ P+
Sbjct: 84 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR 126
Score = 74.4 bits (182), Expect = 1e-14
Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIR-----DLCVGVLSVLTDIVWRSSVTWKAGNTAC 238
VLV ++ ++ N+ ++ D+ VGVL++ I S + A C
Sbjct: 40 VLVCWAVWLNSNLQNVTNY-----FVVSLAAADIAVGVLAIPFAITI--STGFCAACHGC 92
Query: 239 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSI 296
+ V+T SS + L+A++IDRY AI+ P+ + G + RA+ ++ I W++SF + +
Sbjct: 93 LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGL 152
Query: 297 PIAVLFH------------VRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISI 344
+ ++ +G C E P + +Y + A ++P +++
Sbjct: 153 TPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN--FFACVLVPLLLMLG 210
Query: 345 CYILI 349
Y+ I
Sbjct: 211 VYLRI 215
Score = 36.3 bits (83), Expect = 0.017
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 361 TFVLCWSPYIVFDLLQVY-GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
F LCW P + + + ++ ++ L+ NS NP IY
Sbjct: 403 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV--LSHTNSVVNPFIYAYR 453
Score = 35.1 bits (80), Expect = 0.037
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ A+ +L +LGN V + + ++ N+F++ LA A
Sbjct: 26 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 66
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 76.5 bits (187), Expect = 3e-15
Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 22/197 (11%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
V+ + I+L N V+ T+ K M +FI +LA++DL GV +++ +
Sbjct: 68 VVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVA-YTANLLLSGAT 126
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLS 218
T+K + S V +S + L+A++I+RY + L
Sbjct: 127 TYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMK-------LHNGSNNFRLF 179
Query: 219 VLTDIVWRSSVTW----------KAGNTACKVVR--YSQAVVTYSST--YVLVALSIDRY 264
+L W S+ + ++C V Y + + + +T +L+ + Y
Sbjct: 180 LLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILY 239
Query: 265 YAIKYPMNFCGSWRRAR 281
I + + R
Sbjct: 240 CRIYSLVRTRNIFEMLR 256
Score = 64.1 bits (155), Expect = 3e-11
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 7/167 (4%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 243
+ V L+I + PM + + DL GV +++ + T+K +
Sbjct: 82 IFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVA-YTANLLLSGATTYKLTPAQWFLREG 140
Query: 244 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG-SWRRARWLVGIAWLISFILSIPIAVLF 302
S V +S + L+A++I+RY + G + R L+ W+IS IL +
Sbjct: 141 SMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLP--IM 198
Query: 303 HVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILI 349
+ S C P + Y+ F + + I I Y I
Sbjct: 199 GWNCISALSSCSTVL--PLYHKHYILFCTTV-FTLLLLSIVILYCRI 242
Score = 38.7 bits (89), Expect = 0.003
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
V+ + I+L N V+ T+ K M +FI +LA++
Sbjct: 68 VVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALS 108
Score = 38.3 bits (88), Expect = 0.004
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 359 LYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
L F+ CW+P + LL V +T + + A LA LNS NPIIY +
Sbjct: 427 LSVFIACWAPLFILLLLDVGCK-VKTCDILFRAEYFLVLAVLNSGTNPIIYTLT 479
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 75.9 bits (186), Expect = 4e-15
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIR-----DLCVGVLSVLTDIVWRSSVTWKAGNTAC 238
+LV +SI ++ N+ ++ DL +GV S+ ++ W G C
Sbjct: 42 ILVMVSIKVNRHLQTVNNY-----FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVC 96
Query: 239 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSI 296
+ VV+ +S L+ +S DRY+ + P+ + + + A ++ AW++SFIL
Sbjct: 97 DLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWA 156
Query: 297 PIAVLFHVRLVQGTS---QCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILI 349
P + + + T +C+I+F ++ A F +P +I+++ Y I
Sbjct: 157 PAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAA---FYLPVIIMTVLYWHI 209
Score = 69.0 bits (168), Expect = 7e-13
Identities = 27/103 (26%), Positives = 53/103 (51%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
++ +L ++ ++GN V+ ++K ++ N+F+ LA ADL +GV S+ ++
Sbjct: 28 LVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIG 87
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMN 201
W G C + VV+ +S L+ +S DRY+ + P+
Sbjct: 88 YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLT 130
Score = 35.5 bits (81), Expect = 0.035
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 359 LYTFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
L F++ W+PY V L+ + IP T V T+ L +NS NP Y +
Sbjct: 394 LLAFIITWAPYNVMVLINTFCAPCIPNT-----VWTIGYWLCYINSTINPACYALC 444
Score = 33.9 bits (77), Expect = 0.091
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
++ +L ++ ++GN V+ ++K ++ N+F+ LA A
Sbjct: 28 LVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACA 68
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 75.7 bits (186), Expect = 5e-15
Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 42/322 (13%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+++ + + IV GN VI + + ++ N+FI LA ADL +G+ V +
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK 246
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLS 218
TW GN C+ + +S L +++DRY+AI P KY L
Sbjct: 247 TWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPF------KYQSLLTKNKAR 300
Query: 219 VLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLV---ALSIDRYYAIKYPMNFCG 275
V+ +VW S S + + + C
Sbjct: 301 VIILMVWIVS-------------------GLTSFLPIQMHWYRATHQEAINCYAEETCCD 341
Query: 276 SWRRARWLVGIAWLISFILSIPIAV-------LFHVRLVQGTSQCWIEFEKPWQWQLYMS 328
+ + + + ++SF +P+ + +F Q E Q +
Sbjct: 342 FFTNQAYAI-ASSIVSFY--VPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVE 398
Query: 329 LVALALFVIPAVIISICYILIITTIWAKSKLYTFVLCWSPYIVFDLLQVYGYIPRTQNYI 388
+ + TF LCW P+ + ++ V+
Sbjct: 399 QDGRTGHGLRRSSKFCLKEHKALKTLG-IIMGTFTLCWLPFFIVNI--VHVIQDNLIRKE 455
Query: 389 AVATLIQSLAPLNSAANPIIYC 410
L + +NS NP+IYC
Sbjct: 456 VYILLNW-IGYVNSGFNPLIYC 476
Score = 32.2 bits (73), Expect = 0.31
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+++ + + IV GN VI + + ++ N+FI LA A
Sbjct: 187 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 227
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 75.1 bits (184), Expect = 7e-15
Identities = 38/194 (19%), Positives = 77/194 (39%), Gaps = 18/194 (9%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIR-----DLCVGVLSVLTDIVWRSSVTWKAGNTAC 238
+LV ++ + N YI DL VG + + +I++ W G C
Sbjct: 27 LLVLYAVRSERKLHTVGNL-----YIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLC 81
Query: 239 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSI 296
V + +S + + L IDRY +++ P+ + + RA + AW +SF+ I
Sbjct: 82 LFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI 141
Query: 297 PIAVLFHV---RLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILIITTI 353
PI H V+ +C +F +++ +++ F +P +++ Y I +
Sbjct: 142 PILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIIN---FYLPTLLMLWFYAKIYKAV 198
Query: 354 WAKSKLYTFVLCWS 367
++ +
Sbjct: 199 RQHCNIFEMLRIDE 212
Score = 66.6 bits (162), Expect = 4e-12
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
V+L + ++ V N V++ ++ K + N +I+ L+VADL VG + + +I++
Sbjct: 13 VVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS 72
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLS 218
W G C V + +S + + L IDRY +++ P+ +Y++ S
Sbjct: 73 KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPL------RYLKYRTKTRAS 126
Query: 219 VLTDIVWRSSVTW 231
W S W
Sbjct: 127 ATILGAWFLSFLW 139
Score = 34.7 bits (79), Expect = 0.056
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 361 TFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
F+LCW PY +F + V + N + L +NS NP+IY +
Sbjct: 381 AFILCWIPYFIFFM--VIAFCKNCCNEH-LHMFTIWLGYINSTLNPLIYPLC 429
Score = 33.1 bits (75), Expect = 0.16
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
V+L + ++ V N V++ ++ K + N +I+ L+VA
Sbjct: 13 VVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVA 53
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 72.8 bits (178), Expect = 4e-14
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 211 DLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYP 270
D+ VGVL++ I S + A C + V+T SS + L+A++IDRY AI+ P
Sbjct: 77 DIAVGVLAIPFAITI--STGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIP 134
Query: 271 MNFCG--SWRRARWLVGIAWLISFILSIPIAVLFH------------VRLVQGTSQCWIE 316
+ + G + RA+ ++ I W++SF + + + ++ +G C E
Sbjct: 135 LRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFE 194
Query: 317 FEKPWQWQLYMSLVALALFVIPAVIISICYILIITTIWAKSK 358
P + +Y + A ++P +++ Y+ I +
Sbjct: 195 DVVPMNYMVYFN--FFACVLVPLLLMLGVYLRIFLAARRQLA 234
Score = 72.4 bits (177), Expect = 6e-14
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+ A+ +L +LGN V + + ++ N+F++ LA AD+ VGVL++ I S
Sbjct: 36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITI--ST 93
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPM 200
+ A C + V+T SS + L+A++IDRY AI+ P+
Sbjct: 94 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135
Score = 34.7 bits (79), Expect = 0.051
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 361 TFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
F LCW P + + + + L L+ NS NP IY
Sbjct: 362 LFALCWLPLHIINCFTFFCPDCSHAPLW-LMYLAIVLSHTNSVVNPFIYAYR 412
Score = 32.0 bits (72), Expect = 0.41
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ A+ +L +LGN V + + ++ N+F++ LA A
Sbjct: 36 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 76
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 71.7 bits (176), Expect = 4e-14
Identities = 63/317 (19%), Positives = 116/317 (36%), Gaps = 51/317 (16%)
Query: 99 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSV 158
+++ + +LIV GN VI + + ++ N FI LA ADL VG+L V
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG 75
Query: 159 TWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLS 218
TW G+ C++ + +S L ++IDRY AI P +Y +
Sbjct: 76 TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPF------RYQSLMTRARAK 129
Query: 219 VLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSID---RYYAIKYPMNFCG 275
V+ VW S S +++ D + C
Sbjct: 130 VIICTVWAIS-------------------ALVSFLPIMMHWWRDEDPQALKCYQDPGCCD 170
Query: 276 SWRRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALF 335
+ + + +ISF + + I + +R+ + + + ++ + + ++
Sbjct: 171 FVTNRAYAI-ASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHK 229
Query: 336 VIPAVIISICYILIITTIWAKSKLYTFVLCWSPYIVFDLLQVYG--YIPRTQNYIAVATL 393
+ + I + F LCW P+ + +++ V+ +P +
Sbjct: 230 ALKTLGIIMG---------------VFTLCWLPFFLVNIVNVFNRDLVPDW-----LFVA 269
Query: 394 IQSLAPLNSAANPIIYC 410
L NSA NPIIYC
Sbjct: 270 FNWLGYANSAMNPIIYC 286
Score = 27.8 bits (62), Expect = 7.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+++ + +LIV GN VI + + ++ N FI LA A
Sbjct: 16 LLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACA 56
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 69.4 bits (169), Expect = 5e-13
Identities = 37/175 (21%), Positives = 64/175 (36%), Gaps = 11/175 (6%)
Query: 57 THASASLSGASASLSGAGKSQQDAMLTWSPIRTLTKLNTEQFVILWALFILIVLGNSAVI 116
+ S + + + D + + +++ + + IV GN VI
Sbjct: 8 MGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMG-----IVMSLIVLAIVFGNVLVI 62
Query: 117 FTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAV 176
+ + ++ N+FI LA ADL +G+ V W GN C+ +
Sbjct: 63 TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVL 122
Query: 177 VTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTW 231
+S L +++DRY+AI P KY L V+ +VW S
Sbjct: 123 CVTASIETLCVIAVDRYFAITSPF------KYQSLLTKNKARVIILMVWIVSGLT 171
Score = 69.0 bits (168), Expect = 7e-13
Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIR-----DLCVGVLSVLTDIVWRSSVTWKAGNTAC 238
VLV +I ++ ++ N+ +I DL +G+ V W GN C
Sbjct: 59 VLVITAIAKFERLQTVTNY-----FITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWC 113
Query: 239 KVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG--SWRRARWLVGIAWLISFILSI 296
+ + +S L +++DRY+AI P + + +AR ++ + W++S + S
Sbjct: 114 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 173
Query: 297 PIAVLF--------HVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYIL 348
+ + + C + + + S+V+ F +P VI+ Y
Sbjct: 174 LPIQMHWYRATHQEAINCYAEETCCDFFTNQA--YAIASSIVS---FYVPLVIMVFVYSR 228
Query: 349 I 349
+
Sbjct: 229 V 229
Score = 34.7 bits (79), Expect = 0.062
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 361 TFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 410
TF LCW P+ + +++ V I + V L+ + +NS NP+IYC
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIYC 462
Score = 33.1 bits (75), Expect = 0.19
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+++ + + IV GN VI + + ++ N+FI LA A
Sbjct: 45 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 85
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 69.0 bits (168), Expect = 8e-13
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 30/181 (16%)
Query: 184 VLVALSIDRYYAIKYPMNFCGSCKYIR-----DLCVGVL----SVLTDIVWRSSVTWKAG 234
LV +++ + A++ N+ + DL V L V ++ + W
Sbjct: 57 GLVCMAVLKERALQTTTNY-----LVVSLAVADLLVATLVMPWVVYLEV---TGGVWNFS 108
Query: 235 NTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCG-----SWRRARWLVGIAWL 289
C V ++ +S + L A+SIDRY A+ P+++ S RR ++ W+
Sbjct: 109 RICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWV 168
Query: 290 ISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVIISICYILI 349
++F +S P+ LF + C I + +Y S+V+ F +P + + Y I
Sbjct: 169 LAFAVSCPL--LFGFNTTGDPTVCSISNP---DFVIYSSVVS---FYLPFGVTVLVYARI 220
Query: 350 I 350
Sbjct: 221 Y 221
Score = 65.6 bits (159), Expect = 1e-11
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 16/179 (8%)
Query: 57 THASASLSGASASLSGAGKSQQDAMLTWSPIRTLTKLNTEQFVILWALFILIVLGNSAVI 116
A ASLS S+ L+ ++ + + + AL + IV GN V
Sbjct: 7 DGAPASLSQLSSHLNYTCGAENSTGASQARPHAYY------ALSYCALILAIVFGNGLVC 60
Query: 117 FTLKFGVKRRSRMNFFIMHLAVADLCVGVL----SVLTDIVWRSSVTWKAGNTACKVVRY 172
+ ++ N+ ++ LAVADL V L V ++ + W C V
Sbjct: 61 MAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEV---TGGVWNFSRICCDVFVT 117
Query: 173 SQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTW 231
++ +S + L A+SIDRY A+ P+++ V ++ VW +
Sbjct: 118 LDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT---AVWVLAFAV 173
Score = 36.7 bits (84), Expect = 0.013
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 361 TFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 412
F++CW P+ + +L + + + L +NSA NP+IY F
Sbjct: 409 AFIVCWLPFFLTHVLN--THCQTCHVSPELYSATTWLGYVNSALNPVIYTTF 458
Score = 32.0 bits (72), Expect = 0.34
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 5 VILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
+ AL + IV GN V + ++ N+ ++ LAVA
Sbjct: 43 LSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVA 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 59/359 (16%), Positives = 104/359 (28%), Gaps = 123/359 (34%)
Query: 77 QQDAMLTWSPIRTLTK---LNTEQFV----ILWALFILIVLGNSAVIFTLKFGVKRRSRM 129
+ + SPI+T + + T ++ L+ N +F K+ V R
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---------NDNQVFA-KYNVSRLQPY 137
Query: 130 NFFIMHL----AVADLCV-GVL----SVLTDIVWRSS---------VTW-KAGNTACKVV 170
L ++ + GVL + + V S + W N
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 171 R-------YSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCK-YIRDL--------CV 214
Q ++S D IK ++ S + +R L C
Sbjct: 198 VLEMLQKLLYQIDPNWTS-------RSDHSSNIKLRIH---SIQAELRRLLKSKPYENC- 246
Query: 215 GVLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFC 274
L VL + V + W A N +CK+ ++T V LS I +
Sbjct: 247 --LLVLLN-VQNAKA-WNAFNLSCKI------LLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 275 GSWRR------ARWLVGI--------AWLIS-FILSIPIAVLFHVRLVQGTSQCW----- 314
++L + LSI IA L T W
Sbjct: 297 TLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSI-IAESIRDGL--ATWDNWKHVNC 352
Query: 315 ----------IEFEKPWQWQ-LYMSLVALALFV----IPAVIISICYILIITTIWAKSK 358
+ +P +++ ++ L++F IP +++S+ IW
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSL--------IWFDVI 400
Score = 40.6 bits (94), Expect = 0.001
Identities = 32/204 (15%), Positives = 53/204 (25%), Gaps = 56/204 (27%)
Query: 16 LGNSAVIFTLKFGVKRRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASASLSGAGK 75
L N +F K+ V R + L A+ + G + G+GK
Sbjct: 119 LYNDNQVFA-KYNVSRLQP----YLKLRQALLELRPAKNVLID------G----VLGSGK 163
Query: 76 SQQDAMLTWSPIRTLTKLNTEQFVILWALF--------ILIVLGNSAVIFTLKFG----- 122
+ + + F I W +L +L +
Sbjct: 164 T----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 123 ----------VKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 172
++ R L VL + V + W A N +CK+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC------LLVLLN-VQNAKA-WNAFNLSCKI--- 268
Query: 173 SQAVVTYSSTYVLVALSIDRYYAI 196
++T V LS I
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHI 289
Score = 36.0 bits (82), Expect = 0.024
Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 54/229 (23%)
Query: 7 LWALF-----ILIVLGNSAVIFTLKFGVKRRSRMNFFI--------MHLAVAVTRVSARN 53
W F IL+ V L ++ L + ++
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 54 YPPTHASASLSGASASLSGAGKSQQDAMLTWSPIRTLT--KLNTEQFVILWALFILIVLG 111
P L+ LS +S +D + TW + + KL T ++
Sbjct: 318 LPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-------------IIE 360
Query: 112 NSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVR 171
+S + L+ R+ + + + +LS++ W + K+ +
Sbjct: 361 SS--LNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLI----WFDVIKSDVMVVVNKLHK 413
Query: 172 YS-------QAVVTYSSTYVLVALSIDRYYAI------KY--PMNFCGS 205
YS ++ ++ S Y+ + + ++ YA+ Y P F
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Score = 31.7 bits (71), Expect = 0.54
Identities = 40/361 (11%), Positives = 92/361 (25%), Gaps = 134/361 (37%)
Query: 101 LWALF-----ILIVLGNSAVIFTLKFGVKRRSRMNFF---------------IMHLAVAD 140
W F IL+ V L ++ + D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 141 L----CVG---VLSVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSID-- 191
L LS++ + + TW + V ++ S++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWD---------NWKH--VNCDKLTTIIESSLNVL 366
Query: 192 ------RYY---AI-----KYPMNFCGSCKYIRDLCVGVLSVLTDIVWRSSVTWKAGNTA 237
+ + ++ P +LS++ W +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTI--------------LLSLI----WFDVIKSDVMVVV 408
Query: 238 CKVVRYS-------QAVVTYSSTYVLVALSIDRYYAI------KY--PMNFCGSWRRARW 282
K+ +YS ++ ++ S Y+ + + ++ YA+ Y P F +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 283 LVG-IAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVIPAVI 341
L I H++ ++ + F +++
Sbjct: 469 LDQYFYSHIG----------HHLKNIE-HPERMTLFRM-----VFLDFR----------- 501
Query: 342 ISICYILIITTIWAKSKL-YTFVLCWSPYIVFDLLQV---Y-GYIPRTQNYIAVATLIQS 396
+ + K+ + + + + LQ Y YI N L+ +
Sbjct: 502 ------------FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNA 547
Query: 397 L 397
+
Sbjct: 548 I 548
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase,
ligase; NMR {Aspergillus nidulans fgsc A4}
Length = 164
Score = 31.8 bits (71), Expect = 0.20
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 61 ASLSGASASLSGAGKSQQDAMLTWSPIRTLTKLNTEQFVILWALFIL 107
A + LT++PI+T T++F+I L IL
Sbjct: 77 AYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLIL 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.7
Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 79/208 (37%)
Query: 12 IL-IVLGNSAVIFTLKFGVK--RRSRMNFFIMHLAVAVTRVSARNYPPTHASASLSGASA 68
IL IV+ N + T+ FG + +R R N+ M V + + S
Sbjct: 1661 ILDIVINNPVNL-TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST--SY 1717
Query: 69 SLSG-AGK-----SQQDAMLTWSPIRTLTKLNTEQFVILWALFILIV--------LG-NS 113
+ G Q A+ F L + ++ LG +
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLME---------KAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 114 AVIFTLKFGVKRRSRMNFFIMHL-AVADLCVGVLSVLTDIVWRSSVTWKAGNTACKVVRY 172
A L ++A V+S + +VV Y
Sbjct: 1769 A---------------------LASLA----DVMS-IES--------------LVEVVFY 1788
Query: 173 ----SQAVVTY----SSTYVLVALSIDR 192
Q V S Y ++A++ R
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGR 1816
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 25.5 bits (56), Expect = 3.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 251 SSTYVLVALSIDRYYAIKYPMNFCGSWRRAR 281
SS L A+S+DRY++I + + R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
Score = 25.5 bits (56), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 180 SSTYVLVALSIDRYYAIKYPMNF 202
SS L A+S+DRY++I + +
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEY 24
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.138 0.440
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,331,369
Number of extensions: 364879
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 698
Number of HSP's successfully gapped: 71
Length of query: 419
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 323
Effective length of database: 4,021,377
Effective search space: 1298904771
Effective search space used: 1298904771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.9 bits)