RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17031
         (419 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 70.0 bits (170), Expect = 8e-14
 Identities = 43/315 (13%), Positives = 92/315 (29%), Gaps = 46/315 (14%)

Query: 98  FVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVADLCVGVLSVLTDIVWRSS 157
              ++ L +L    N   ++      K R+ +N+ +++LAVADL +      T +     
Sbjct: 41  AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 100

Query: 158 VTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSCKYIRDLCVGVL 217
             +  G T C +  +   +    + + LV L+I+RY  +  PM+     +    + V   
Sbjct: 101 GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGV--- 157

Query: 218 SVLTDIVWRSSVTWKAGNTACKVVRYSQAVVTYSSTYVLVALSIDRYYAIKYPMNFCGSW 277
                                     + A            +      +           
Sbjct: 158 --------------------AFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEE 197

Query: 278 RRARWLVGIAWLISFILSIPIAVLFHVRLVQGTSQCWIEFEKPWQWQLYMSLVALALFVI 337
                 V   +++ FI+ + +    + +LV    +   + ++    Q     V   + ++
Sbjct: 198 TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIM 257

Query: 338 PAVIISICYILIITTIWAKSKLYTFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSL 397
                                   F++CW PY                            
Sbjct: 258 VIA---------------------FLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--F 294

Query: 398 APLNSAANPIIYCIF 412
           A  ++  NP+IY + 
Sbjct: 295 AKTSAVYNPVIYIMM 309



 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 4  FVILWALFILIVLGNSAVIFTLKFGVKRRSRMNFFIMHLAVA 45
             ++ L +L    N   ++      K R+ +N+ +++LAVA
Sbjct: 41 AAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,550,371
Number of extensions: 68964
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 12
Length of query: 419
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,199,356
Effective search space: 396986836
Effective search space used: 396986836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.1 bits)