Query psy17032
Match_columns 283
No_of_seqs 179 out of 1186
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 20:05:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07432 5'-methylthioadenosin 100.0 2.7E-67 5.9E-72 477.1 31.3 269 3-280 1-273 (290)
2 PRK08931 5'-methylthioadenosin 100.0 2.5E-67 5.3E-72 477.6 30.8 271 3-280 1-272 (289)
3 PRK08564 5'-methylthioadenosin 100.0 1.8E-66 3.8E-71 469.3 31.6 262 2-274 4-266 (267)
4 PRK07823 5'-methylthioadenosin 100.0 3.1E-65 6.8E-70 459.2 30.1 258 1-275 1-259 (264)
5 PRK09136 5'-methylthioadenosin 100.0 1.4E-62 3E-67 439.4 29.1 242 7-252 1-243 (245)
6 COG0005 Pnp Purine nucleoside 100.0 8.1E-61 1.8E-65 425.4 26.0 243 4-254 15-262 (262)
7 PRK08666 5'-methylthioadenosin 100.0 4.3E-60 9.4E-65 428.2 30.2 258 6-273 2-259 (261)
8 KOG3985|consensus 100.0 3E-60 6.5E-65 406.6 23.7 274 5-278 9-282 (283)
9 TIGR01699 XAPA xanthosine phos 100.0 9.6E-59 2.1E-63 414.6 26.9 239 7-252 1-248 (248)
10 TIGR01698 PUNP purine nucleoti 100.0 2.8E-58 6.1E-63 407.9 25.7 228 7-252 1-237 (237)
11 PRK08202 purine nucleoside pho 100.0 6.3E-56 1.4E-60 402.9 29.1 244 4-254 20-272 (272)
12 TIGR01694 MTAP 5'-deoxy-5'-met 100.0 9.4E-54 2E-58 382.7 29.4 240 7-252 1-240 (241)
13 KOG3984|consensus 100.0 4.1E-52 8.8E-57 358.6 21.8 248 4-254 23-284 (286)
14 TIGR01700 PNPH purine nucleosi 100.0 2.5E-51 5.3E-56 368.5 27.1 236 7-251 1-248 (249)
15 TIGR01697 PNPH-PUNA-XAPA inosi 100.0 4.8E-49 1E-53 353.7 28.4 233 7-251 1-247 (248)
16 PRK06714 S-adenosylhomocystein 100.0 1E-33 2.2E-38 252.5 22.2 223 6-255 2-229 (236)
17 PRK14697 bifunctional 5'-methy 100.0 6.2E-33 1.3E-37 247.1 22.1 222 6-256 2-229 (233)
18 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 1.1E-32 2.5E-37 244.6 22.6 223 7-254 1-228 (228)
19 PRK06698 bifunctional 5'-methy 100.0 3.7E-32 8.1E-37 263.9 22.5 222 6-255 2-228 (459)
20 PRK05584 5'-methylthioadenosin 100.0 3.3E-31 7.2E-36 235.0 23.3 225 6-254 1-229 (230)
21 PF01048 PNP_UDP_1: Phosphoryl 100.0 1.8E-31 4E-36 236.0 18.6 229 7-252 1-234 (234)
22 PRK07164 5'-methylthioadenosin 100.0 1.6E-30 3.4E-35 229.2 21.1 212 4-254 2-218 (218)
23 PLN02584 5'-methylthioadenosin 100.0 2.3E-29 5E-34 226.0 22.4 226 6-256 9-243 (249)
24 COG0775 Pfs Nucleoside phospho 100.0 1.3E-29 2.9E-34 225.6 20.0 228 4-254 1-233 (234)
25 PRK13374 purine nucleoside pho 100.0 1.3E-26 2.7E-31 206.6 22.4 162 38-220 45-209 (233)
26 PRK11178 uridine phosphorylase 100.0 1.6E-26 3.4E-31 208.0 22.2 188 6-218 17-221 (251)
27 TIGR00107 deoD purine-nucleosi 99.9 5.9E-26 1.3E-30 202.1 24.2 187 40-254 43-232 (232)
28 TIGR01718 Uridine-psphlse urid 99.9 5E-26 1.1E-30 204.1 22.5 218 6-254 12-244 (245)
29 TIGR03468 HpnG hopanoid-associ 99.9 1.9E-26 4.1E-31 202.7 16.7 168 48-253 19-188 (212)
30 PRK05819 deoD purine nucleosid 99.9 1.9E-25 4.1E-30 199.2 22.7 190 6-220 13-208 (235)
31 TIGR03664 fut_nucase futalosin 99.9 2.4E-26 5.2E-31 203.4 15.7 164 42-220 22-199 (222)
32 PRK07115 AMP nucleosidase; Pro 99.9 3.5E-25 7.5E-30 199.6 21.0 182 48-256 59-246 (258)
33 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.9 1.6E-25 3.4E-30 195.3 18.0 172 50-256 30-207 (212)
34 PRK06026 5'-methylthioadenosin 99.9 3.5E-24 7.7E-29 187.1 18.0 171 48-254 28-205 (212)
35 PRK08236 hypothetical protein; 99.9 4.8E-24 1E-28 187.3 19.0 181 6-219 2-188 (212)
36 TIGR01719 euk_UDPppase uridine 99.9 1.1E-23 2.3E-28 192.9 21.6 186 44-254 73-284 (287)
37 PRK08292 AMP nucleosidase; Pro 99.9 1.2E-23 2.6E-28 201.4 21.9 194 39-257 265-471 (489)
38 COG0813 DeoD Purine-nucleoside 99.9 1.6E-23 3.5E-28 180.4 19.7 185 41-252 48-234 (236)
39 TIGR01721 AMN-like AMP nucleos 99.9 3.7E-23 8.1E-28 186.5 20.0 184 48-256 59-247 (266)
40 TIGR01717 AMP-nucleosdse AMP n 99.9 6.1E-23 1.3E-27 196.0 22.3 190 41-255 256-457 (477)
41 PRK07077 hypothetical protein; 99.9 3E-22 6.6E-27 178.2 19.8 175 70-272 42-229 (238)
42 COG2820 Udp Uridine phosphoryl 99.9 4.8E-22 1E-26 173.5 18.9 159 40-220 49-221 (248)
43 PRK05634 nucleosidase; Provisi 99.8 8.2E-20 1.8E-24 157.3 14.6 147 57-241 28-178 (185)
44 KOG3728|consensus 98.5 1.7E-06 3.7E-11 76.0 10.6 189 46-254 96-305 (308)
45 COG1363 FrvX Cellulase M and r 92.9 1.5 3.2E-05 41.7 11.3 91 132-257 259-349 (355)
46 PF06516 NUP: Purine nucleosid 86.8 27 0.00059 32.6 16.5 158 50-218 47-264 (314)
47 COG2910 Putative NADH-flavin r 82.5 0.68 1.5E-05 40.1 1.4 54 45-101 59-114 (211)
48 KOG1430|consensus 77.1 22 0.00048 33.9 9.8 119 66-207 99-235 (361)
49 PRK09864 putative peptidase; P 72.1 64 0.0014 30.7 11.6 88 134-256 256-343 (356)
50 TIGR03107 glu_aminopep glutamy 69.3 59 0.0013 30.8 10.7 88 133-256 256-343 (350)
51 PF14488 DUF4434: Domain of un 67.7 20 0.00044 30.2 6.5 33 140-175 62-94 (166)
52 PRK09961 exoaminopeptidase; Pr 67.4 60 0.0013 30.6 10.3 88 133-255 247-334 (344)
53 COG2099 CobK Precorrin-6x redu 66.9 14 0.00031 33.4 5.6 60 153-216 167-233 (257)
54 TIGR00715 precor6x_red precorr 61.0 34 0.00073 31.0 7.0 59 151-213 166-231 (256)
55 cd04740 DHOD_1B_like Dihydroor 57.9 1E+02 0.0023 27.9 9.9 25 74-98 172-196 (296)
56 cd06309 PBP1_YtfQ_like Peripla 55.7 57 0.0012 28.4 7.6 73 134-213 7-88 (273)
57 PRK08057 cobalt-precorrin-6x r 53.3 29 0.00064 31.2 5.3 50 163-213 168-223 (248)
58 TIGR03106 trio_M42_hydro hydro 52.8 87 0.0019 29.5 8.6 82 134-251 258-339 (343)
59 cd01541 PBP1_AraR Ligand-bindi 51.3 69 0.0015 27.9 7.4 74 135-213 8-91 (273)
60 PRK09213 pur operon repressor; 49.2 42 0.00091 30.7 5.7 68 144-213 80-161 (271)
61 TIGR00162 conserved hypothetic 48.5 82 0.0018 27.1 7.1 54 40-95 4-61 (188)
62 COG1184 GCD2 Translation initi 47.8 1.2E+02 0.0025 28.3 8.4 73 137-213 125-229 (301)
63 cd06296 PBP1_CatR_like Ligand- 47.5 1.1E+02 0.0023 26.5 7.9 74 135-213 8-86 (270)
64 PF02571 CbiJ: Precorrin-6x re 47.2 56 0.0012 29.4 6.1 51 162-213 171-227 (249)
65 COG2200 Rtn c-di-GMP phosphodi 44.4 61 0.0013 29.0 6.0 44 138-190 188-231 (256)
66 cd06313 PBP1_ABC_sugar_binding 44.3 96 0.0021 27.2 7.2 71 136-213 9-88 (272)
67 PRK13810 orotate phosphoribosy 43.8 90 0.0019 26.8 6.6 69 144-214 15-105 (187)
68 cd06270 PBP1_GalS_like Ligand 43.3 1.2E+02 0.0027 26.1 7.7 72 135-213 8-86 (268)
69 cd06281 PBP1_LacI_like_5 Ligan 43.2 1.2E+02 0.0027 26.2 7.8 74 135-215 8-89 (269)
70 TIGR01743 purR_Bsub pur operon 41.2 41 0.0009 30.7 4.3 26 189-214 134-160 (268)
71 cd06317 PBP1_ABC_sugar_binding 38.0 1.4E+02 0.0029 25.8 7.1 69 137-212 11-88 (275)
72 cd06273 PBP1_GntR_like_1 This 37.8 1.7E+02 0.0036 25.2 7.6 70 137-213 10-86 (268)
73 PF14791 DNA_pol_B_thumb: DNA 37.6 26 0.00056 24.8 1.9 50 141-190 8-57 (64)
74 cd06289 PBP1_MalI_like Ligand- 37.4 2E+02 0.0044 24.5 8.2 71 136-213 9-87 (268)
75 cd06297 PBP1_LacI_like_12 Liga 37.4 1.4E+02 0.0031 25.9 7.3 73 135-213 8-86 (269)
76 cd06320 PBP1_allose_binding Pe 37.4 1.7E+02 0.0037 25.4 7.7 71 136-212 9-89 (275)
77 COG1794 RacX Aspartate racemas 36.9 3.4 7.4E-05 36.7 -3.2 19 73-91 67-86 (230)
78 PF00391 PEP-utilizers: PEP-ut 35.6 31 0.00067 25.1 2.2 35 176-210 21-58 (80)
79 PRK06552 keto-hydroxyglutarate 35.3 57 0.0012 28.6 4.2 65 137-215 94-165 (213)
80 cd06305 PBP1_methylthioribose_ 35.2 2E+02 0.0042 24.8 7.7 70 137-213 10-88 (273)
81 PRK07259 dihydroorotate dehydr 35.2 2.7E+02 0.0058 25.3 8.8 28 74-101 175-202 (301)
82 PF05343 Peptidase_M42: M42 gl 35.1 2.4E+02 0.0051 25.9 8.4 76 133-235 214-289 (292)
83 cd06312 PBP1_ABC_sugar_binding 34.9 2.3E+02 0.0049 24.6 8.1 70 137-212 11-89 (271)
84 COG0826 Collagenase and relate 34.3 1.9E+02 0.0041 27.4 7.8 61 145-210 51-118 (347)
85 cd01538 PBP1_ABC_xylose_bindin 34.2 1.3E+02 0.0029 26.6 6.5 72 136-212 9-87 (288)
86 cd06282 PBP1_GntR_like_2 Ligan 33.7 2.2E+02 0.0048 24.3 7.7 70 136-212 9-86 (266)
87 PF01081 Aldolase: KDPG and KH 32.5 33 0.00071 29.8 2.1 42 137-192 86-127 (196)
88 cd06315 PBP1_ABC_sugar_binding 32.4 2.2E+02 0.0048 25.0 7.7 71 136-213 10-89 (280)
89 cd06278 PBP1_LacI_like_2 Ligan 32.2 2.3E+02 0.0051 24.1 7.6 72 136-213 9-85 (266)
90 TIGR02634 xylF D-xylose ABC tr 32.1 2.1E+02 0.0045 25.7 7.6 68 139-213 11-87 (302)
91 PF01008 IF-2B: Initiation fac 31.9 46 0.001 30.0 3.1 30 185-214 182-219 (282)
92 cd06279 PBP1_LacI_like_3 Ligan 31.7 2.5E+02 0.0055 24.5 7.9 68 137-213 15-87 (283)
93 PRK06015 keto-hydroxyglutarate 31.6 37 0.0008 29.6 2.3 44 137-194 82-125 (201)
94 PRK06728 aspartate-semialdehyd 31.3 31 0.00067 32.8 1.9 18 1-18 1-18 (347)
95 cd06291 PBP1_Qymf_like Ligand 31.2 1.6E+02 0.0034 25.4 6.4 70 137-213 10-83 (265)
96 PF09754 PAC2: PAC2 family; I 31.1 1.2E+02 0.0025 26.1 5.5 58 38-100 58-117 (219)
97 cd06299 PBP1_LacI_like_13 Liga 30.8 2.7E+02 0.0059 23.8 7.9 70 137-213 10-86 (265)
98 PRK15408 autoinducer 2-binding 30.4 2.5E+02 0.0053 26.1 7.9 69 138-213 35-113 (336)
99 cd06274 PBP1_FruR Ligand bindi 30.0 2.7E+02 0.0058 23.9 7.7 71 136-213 9-86 (264)
100 cd06322 PBP1_ABC_sugar_binding 29.9 2.3E+02 0.005 24.3 7.3 72 135-213 8-88 (267)
101 cd05212 NAD_bind_m-THF_DH_Cycl 29.3 73 0.0016 26.0 3.6 54 45-107 25-78 (140)
102 TIGR01501 MthylAspMutase methy 28.9 1.4E+02 0.0029 24.4 5.1 55 146-208 19-83 (134)
103 PRK06186 hypothetical protein; 28.9 2.3E+02 0.005 25.3 6.9 65 142-213 18-90 (229)
104 cd06300 PBP1_ABC_sugar_binding 28.5 3.2E+02 0.0068 23.6 7.9 74 135-213 8-93 (272)
105 cd01575 PBP1_GntR Ligand-bindi 28.3 2.8E+02 0.0061 23.6 7.5 70 136-212 9-85 (268)
106 TIGR01037 pyrD_sub1_fam dihydr 28.0 4.2E+02 0.0092 24.0 8.9 24 74-97 175-198 (300)
107 cd06272 PBP1_hexuronate_repres 27.9 3.2E+02 0.007 23.3 7.8 69 136-213 9-82 (261)
108 cd06324 PBP1_ABC_sugar_binding 27.9 2.8E+02 0.006 24.8 7.6 70 137-213 11-90 (305)
109 cd01540 PBP1_arabinose_binding 27.7 2.9E+02 0.0062 24.1 7.5 68 137-212 10-86 (289)
110 cd06308 PBP1_sensor_kinase_lik 27.4 2.6E+02 0.0057 24.1 7.2 70 136-212 9-88 (270)
111 cd05191 NAD_bind_amino_acid_DH 27.4 1.7E+02 0.0038 21.1 5.1 42 45-107 20-61 (86)
112 COG1609 PurR Transcriptional r 26.9 2.7E+02 0.0059 25.8 7.5 75 135-216 67-148 (333)
113 PRK13561 putative diguanylate 26.7 1.3E+02 0.0029 30.3 5.8 42 140-190 588-629 (651)
114 COG2185 Sbm Methylmalonyl-CoA 26.6 1.5E+02 0.0032 24.6 4.9 57 146-210 30-96 (143)
115 TIGR00640 acid_CoA_mut_C methy 26.4 1.7E+02 0.0036 23.6 5.2 43 146-196 20-63 (132)
116 cd06318 PBP1_ABC_sugar_binding 26.1 2.7E+02 0.0059 24.1 7.1 69 137-213 10-88 (282)
117 cd06285 PBP1_LacI_like_7 Ligan 26.0 4.2E+02 0.009 22.7 8.2 71 135-212 8-85 (265)
118 TIGR01182 eda Entner-Doudoroff 25.5 56 0.0012 28.6 2.4 42 137-192 86-127 (204)
119 cd01545 PBP1_SalR Ligand-bindi 25.4 3.7E+02 0.008 23.0 7.7 74 136-213 9-88 (270)
120 cd01574 PBP1_LacI Ligand-bindi 25.0 4.3E+02 0.0093 22.5 8.4 73 136-214 9-88 (264)
121 PRK10653 D-ribose transporter 24.9 3E+02 0.0064 24.4 7.2 69 137-213 37-115 (295)
122 PRK10355 xylF D-xylose transpo 24.9 2.9E+02 0.0063 25.3 7.3 68 137-211 36-112 (330)
123 cd06288 PBP1_sucrose_transcrip 24.9 3.4E+02 0.0074 23.1 7.4 72 137-215 11-88 (269)
124 cd06284 PBP1_LacI_like_6 Ligan 24.7 4E+02 0.0086 22.6 7.8 71 135-212 8-84 (267)
125 cd06306 PBP1_TorT-like TorT-li 24.7 4E+02 0.0087 23.0 7.9 69 137-211 10-87 (268)
126 cd06295 PBP1_CelR Ligand bindi 24.7 3.8E+02 0.0082 23.1 7.7 70 137-213 21-95 (275)
127 COG0066 LeuD 3-isopropylmalate 24.6 1.3E+02 0.0028 26.1 4.4 37 45-88 59-96 (191)
128 PRK10703 DNA-binding transcrip 24.6 3.4E+02 0.0073 24.5 7.6 71 137-212 70-146 (341)
129 smart00030 CLb CLUSTERIN Beta 24.6 85 0.0018 27.4 3.2 49 228-276 44-101 (206)
130 cd06275 PBP1_PurR Ligand-bindi 24.3 3.9E+02 0.0084 22.8 7.7 72 137-213 10-87 (269)
131 TIGR00222 panB 3-methyl-2-oxob 24.2 5.5E+02 0.012 23.4 10.6 62 142-209 61-133 (263)
132 PF01488 Shikimate_DH: Shikima 24.2 66 0.0014 25.7 2.4 35 45-89 9-43 (135)
133 cd06319 PBP1_ABC_sugar_binding 24.2 3.4E+02 0.0075 23.3 7.3 69 137-212 10-87 (277)
134 PRK10200 putative racemase; Pr 24.0 41 0.00088 29.8 1.3 16 72-87 66-81 (230)
135 PRK07114 keto-hydroxyglutarate 23.9 60 0.0013 28.8 2.3 40 137-190 97-136 (222)
136 TIGR00035 asp_race aspartate r 23.8 45 0.00098 29.3 1.5 19 72-90 66-84 (229)
137 cd06298 PBP1_CcpA_like Ligand- 23.7 2.8E+02 0.006 23.7 6.6 72 135-213 8-86 (268)
138 cd06301 PBP1_rhizopine_binding 23.7 3E+02 0.0064 23.7 6.8 68 137-212 10-88 (272)
139 cd07363 45_DOPA_Dioxygenase Th 23.6 5.3E+02 0.011 22.9 9.1 25 136-160 74-98 (253)
140 cd01542 PBP1_TreR_like Ligand- 23.5 3.6E+02 0.0078 22.9 7.3 71 135-212 8-85 (259)
141 cd06294 PBP1_ycjW_transcriptio 23.2 4.4E+02 0.0096 22.4 7.8 69 137-213 15-91 (270)
142 cd06302 PBP1_LsrB_Quorum_Sensi 23.2 4.5E+02 0.0098 23.3 8.0 69 137-212 10-88 (298)
143 COG0825 AccA Acetyl-CoA carbox 23.1 2.6E+02 0.0055 26.1 6.2 51 43-94 101-163 (317)
144 cd07369 PydA_Rs_like PydA is a 23.1 1.4E+02 0.0031 28.0 4.8 26 135-160 93-118 (329)
145 cd04739 DHOD_like Dihydroorota 22.8 5.8E+02 0.012 23.7 8.8 22 73-94 180-201 (325)
146 cd06323 PBP1_ribose_binding Pe 22.6 3.9E+02 0.0085 22.7 7.3 71 136-213 9-88 (268)
147 cd02072 Glm_B12_BD B12 binding 22.4 2.2E+02 0.0047 23.0 5.1 53 147-207 18-80 (128)
148 cd06316 PBP1_ABC_sugar_binding 22.4 3.8E+02 0.0082 23.6 7.3 71 137-213 10-89 (294)
149 KOG2387|consensus 22.2 2.7E+02 0.0058 27.6 6.4 66 144-213 317-400 (585)
150 PRK13958 N-(5'-phosphoribosyl) 21.7 3.6E+02 0.0079 23.3 6.8 12 169-180 32-43 (207)
151 PRK14987 gluconate operon tran 21.4 3.9E+02 0.0084 24.0 7.3 68 137-211 74-148 (331)
152 COG0777 AccD Acetyl-CoA carbox 21.3 2.2E+02 0.0048 26.2 5.4 53 41-93 114-169 (294)
153 COG2907 Predicted NAD/FAD-bind 21.0 2.1E+02 0.0046 27.6 5.3 72 5-84 8-86 (447)
154 PRK07565 dihydroorotate dehydr 20.8 5.4E+02 0.012 23.8 8.2 44 146-198 229-273 (334)
155 KOG1467|consensus 20.7 4.5E+02 0.0097 26.4 7.6 20 193-212 449-468 (556)
156 TIGR02990 ectoine_eutA ectoine 20.6 3.7E+02 0.0081 23.9 6.8 129 75-209 65-210 (239)
157 cd06277 PBP1_LacI_like_1 Ligan 20.5 4.8E+02 0.01 22.3 7.5 69 137-212 13-87 (268)
158 cd01539 PBP1_GGBP Periplasmic 20.4 4.2E+02 0.009 23.6 7.2 69 137-212 10-89 (303)
159 cd06283 PBP1_RegR_EndR_KdgR_li 20.3 4.5E+02 0.0098 22.3 7.2 71 136-213 9-86 (267)
160 COG0182 Predicted translation 20.2 88 0.0019 29.5 2.6 32 186-217 235-274 (346)
161 PF10796 Anti-adapt_IraP: Sigm 20.1 3.4E+02 0.0074 20.5 5.3 42 241-282 27-68 (87)
No 1
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=100.00 E-value=2.7e-67 Score=477.07 Aligned_cols=269 Identities=41% Similarity=0.729 Sum_probs=251.2
Q ss_pred CCCceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCC
Q psy17032 3 VSKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGC 82 (283)
Q Consensus 3 ~~~~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv 82 (283)
|.+++||||||||+++++.+++..++.++||||+|+++++.|+++|++|++++|||++|.|++++|||+||+|+|+.+||
T Consensus 1 ~~~~~igIIgGSGl~~l~~l~~~~~~~~~tp~G~ps~~l~~G~l~g~~v~~l~RhGr~H~y~p~~i~~rAni~alk~lGv 80 (290)
T PRK07432 1 MTQAKIGIIGGSGLYKMEALKDVEEVQLETPFGSPSDALIVGTLDGTRVAFLARHGRNHTLLPTELPFRANIYAMKQLGV 80 (290)
T ss_pred CCCCcEEEEecCccCChhhcCcceEEEeeCCCCCCCCCEEEEEECCEEEEEEECCCCCCccChhhcCcHHHHHHHHHcCC
Confidence 46789999999999987777888889999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCC---cE
Q psy17032 83 THVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF---KF 159 (283)
Q Consensus 83 ~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~---~~ 159 (283)
++||.||++||||++++|||+|+++||||+++.+++|+|+.. ...|++|+.+|||+|++.++++|+++++ ++
T Consensus 81 ~~ii~tna~Gsln~~~~pGdlvv~~D~Id~t~~rp~t~~~~~-----~~~~~~~~~~y~~~Lr~~l~~~a~~~~~~~~~~ 155 (290)
T PRK07432 81 EYLISASAVGSLKEEAKPLDMVVPDQFIDRTKNRISTFFGEG-----IVAHIGFGDPICPALAGVLADAIASLNLPDVTL 155 (290)
T ss_pred CEEEEEeccccccCCCCCCCEEeecceecCCCCCCCcccCCC-----cccCCcCCCCcCHHHHHHHHHHHHHcCCCccce
Confidence 999999999999999999999999999999999999987643 1347899999999999999999999877 78
Q ss_pred EeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHH
Q psy17032 160 HDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKEN 239 (283)
Q Consensus 160 ~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~ 239 (283)
|++|+|+++.||+|||+||+|++|+||||+|||+++||+++|+|+|+||++|++|||+|.|..+.+++||+|+++.++++
T Consensus 156 ~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMS~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~~~~~~~ 235 (290)
T PRK07432 156 HRGGTYVCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVIGNLHKN 235 (290)
T ss_pred eCCeEEEEeeCCCCCcHHHHHHHHHcCCCEeccCchHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHHHHHHHH
Confidence 87899999999999999999999999999999999999999999999999999999999886334679999999999999
Q ss_pred HHHHHHHHHHHHHhccc-cCChhHHHHHHhhhhhcCcCCCCC
Q psy17032 240 VEKITKLFVHIVPKIAA-KDWTNEITELKSVVETSNMSPQSP 280 (283)
Q Consensus 240 ~~~~~~ll~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (283)
++++.+++.++|+++.+ ++.| .|+++++.+++|+++.
T Consensus 236 ~~~~~~ll~~~i~~l~~~~~~~----~c~~~l~~~~~~~~~~ 273 (290)
T PRK07432 236 AVNAQKVIQETVRRLSANPPVS----AAHSALKYAILTPLDK 273 (290)
T ss_pred HHHHHHHHHHHHHHhcccCCCC----chhHHHhccccCChhh
Confidence 99999999999999976 8889 9999999999998753
No 2
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=100.00 E-value=2.5e-67 Score=477.58 Aligned_cols=271 Identities=39% Similarity=0.679 Sum_probs=250.2
Q ss_pred CCCceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCC
Q psy17032 3 VSKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGC 82 (283)
Q Consensus 3 ~~~~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv 82 (283)
|++|+|||||||||++++.+.+..+...+||||.|+++++.|+++|++|++++|||++|.|+|++|||+||+|+|+.+||
T Consensus 1 ~~~p~igIIgGSGl~~~~~l~~~~~~~~~tpyg~psg~l~~G~l~G~~V~~l~RhGr~H~y~p~~i~~rAni~alk~lGv 80 (289)
T PRK08931 1 MTKAVLGIIGGSGVYDIDGLEDARWERVESPWGEPSDALLFGRLGGVPMVFLPRHGRGHRLSPSDINYRANIDALKRAGV 80 (289)
T ss_pred CCCceEEEEecCCcCCccccccceeeeeEcCCCCCcCcEEEEEECCEEEEEEeCCCCCCccChHHcccHHHHHHHHHcCC
Confidence 57899999999999987667777788999999988889999999999999999999999999999999999999999999
Q ss_pred CEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEee
Q psy17032 83 THVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDK 162 (283)
Q Consensus 83 ~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~ 162 (283)
+.||.+|++||||++++|||+|+++||||+++.++.++|+.. ..+|++|+.+||++|++.+.++|+++++++|++
T Consensus 81 ~~ii~tnA~Gsln~~~~pGd~vi~~D~In~t~~~~~~~~g~~-----~~~f~~m~~~y~~~Lr~~l~~~a~~~~~~~~~~ 155 (289)
T PRK08931 81 TDIVSLSACGSFREELPPGTFVIVDQFIDRTFAREKSFFGTG-----CVAHVSMAHPVCPRLGDRLAAAARAEGITVHRG 155 (289)
T ss_pred CEEEEecccccCCCCCCCCCEEeehhhhccCCCCCCCccCCC-----cccCCCCCcccCHHHHHHHHHHHHHcCCeEecc
Confidence 999999999999999999999999999999988777777431 146999999999999999999999999999988
Q ss_pred eeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHH
Q psy17032 163 GTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEK 242 (283)
Q Consensus 163 G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~ 242 (283)
|+|+++.||+|||+||+|++|+||||+|||+++||+++|+|+||||++|++|||++.|....++++|+|+++.++++..+
T Consensus 156 GvYv~~~GPrfET~AEir~~r~~GaDvVGMStvPEvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~~~~~ 235 (289)
T PRK08931 156 GTYLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADK 235 (289)
T ss_pred eEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999886335689999999999999999
Q ss_pred HHHHHHHHHHhccccC-ChhHHHHHHhhhhhcCcCCCCC
Q psy17032 243 ITKLFVHIVPKIAAKD-WTNEITELKSVVETSNMSPQSP 280 (283)
Q Consensus 243 ~~~ll~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 280 (283)
+.+|+.++|+++.+.+ .|.. .|+++++.+.+|+++.
T Consensus 236 ~~~ll~~~i~~l~~~~~~~~~--~c~~~l~~~~~~~~~~ 272 (289)
T PRK08931 236 ARALVARLAPDLGAEREPCPA--GCDRALDHAIITAPEA 272 (289)
T ss_pred HHHHHHHHHHHhcccccCCch--hhhHHHhccccCChhh
Confidence 9999999999998666 6611 4999999999998753
No 3
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=100.00 E-value=1.8e-66 Score=469.29 Aligned_cols=262 Identities=49% Similarity=0.825 Sum_probs=246.3
Q ss_pred CCCCceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcC
Q psy17032 2 SVSKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVG 81 (283)
Q Consensus 2 ~~~~~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~G 81 (283)
++.+|+|||||||||++++.+.+..+...+||||.|+++++.|+++|++|++++|||++|.|+|+++||++++|+|+++|
T Consensus 4 ~~~~~~igiIgGSGl~~~~~l~~~~~~~~~tpyg~p~~~l~~g~l~g~~v~~l~RhGr~H~y~~~~i~~~a~i~aLk~LG 83 (267)
T PRK08564 4 PNEKASIGIIGGSGLYDPGIFENSKEVKVYTPYGEPSDNIIIGEIEGVEVAFLPRHGRGHRIPPHKINYRANIWALKELG 83 (267)
T ss_pred CCCCceEEEEecCCCCCCcccccceeeeEEcCCCCCccCEEEEEECCEEEEEEeCCCCCcccCCccCcchHHHHHHHHCC
Confidence 46789999999999988767777778899999999889999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q psy17032 82 CTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHD 161 (283)
Q Consensus 82 v~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ 161 (283)
|+.||.+|++|||||++++||+||++||||+++.+++++++++ ...|++|+.+||++|++.+.++|+++++++|+
T Consensus 84 vk~iI~tnavGsl~~~~~pGDlVv~~D~I~~tg~~p~t~~~g~-----~~~~~~~~~~y~~~Lr~~l~~aA~~~g~~~~~ 158 (267)
T PRK08564 84 VEWVIAVSAVGSLREDYKPGDFVIPDQFIDMTKKREYTFYDGP-----VVAHVSMADPFCPELRKIIIETAKELGIRTHE 158 (267)
T ss_pred CcEEEEeccccccCCCCCCCCEEeehhhhccCCCCCcccCCCC-----ccccCCCCcccCHHHHHHHHHHHHHcCCceec
Confidence 9999999999999999999999999999999999888877543 12358899999999999999999999999997
Q ss_pred eeeEEEecCCcccCHHHHHHHHHc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHH
Q psy17032 162 KGTAVCIEGPRFSSRAESNLFRSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENV 240 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE~~~~~~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~ 240 (283)
+|+|+++.||+|||+||+|+||++ |||+|||+++||+++|||+|+||++|++|||++.|. +.+++|+|+++.+++++
T Consensus 159 ~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvilAre~g~~~~~is~VtN~a~g~--~~~~t~~ev~~~~~~~~ 236 (267)
T PRK08564 159 KGTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVNLACELGMCYATIAMVTDYDVWA--EKPVTAEEVTRVMAENT 236 (267)
T ss_pred ceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHHHHHHcCCceEEEEEEeccccCC--CCCCCHHHHHHHHHHHH
Confidence 799999999999999999999996 999999999999999999999999999999999884 68999999999999999
Q ss_pred HHHHHHHHHHHHhccccCChhHHHHHHhhhhhcC
Q psy17032 241 EKITKLFVHIVPKIAAKDWTNEITELKSVVETSN 274 (283)
Q Consensus 241 ~~~~~ll~~~l~~l~~~~~~~~~~~~~~~~~~~~ 274 (283)
.++.+++.++|+++++++.| .|+++++.+.
T Consensus 237 ~~~~~ll~~~i~~l~~~~~c----~c~~~~~~~~ 266 (267)
T PRK08564 237 EKAKKLLYEAIPRIPEERKC----SCCDSLKTAL 266 (267)
T ss_pred HHHHHHHHHHHHhccccCCC----chHHHHhhcc
Confidence 99999999999999999999 9999999865
No 4
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=3.1e-65 Score=459.19 Aligned_cols=258 Identities=38% Similarity=0.625 Sum_probs=241.0
Q ss_pred CCCCCceEEEEeCCCCCCccccc-ccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHH
Q psy17032 1 MSVSKIKIGFIGGSGLNNPQILE-NAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKS 79 (283)
Q Consensus 1 ~~~~~~~igIIggsgl~~~~~l~-~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~ 79 (283)
|-+++|+|||||||||+++ ++ +..+...+||||.|+++++.|+++|++|++++|||++|.|+|+.+|++||+|+|+.
T Consensus 1 ~~~~~p~igII~GSGl~~l--~~~~~~~~~~~tpyg~~sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~~rani~alk~ 78 (264)
T PRK07823 1 MHNNGAMLGVIGGSGFYSF--FGSDAREVNVDTPYGPPSAPITIGEVGGRRVAFLPRHGRDHEFSPHTVPYRANMWALRA 78 (264)
T ss_pred CCCCCceEEEEeccccchh--hcccceeeEEeccCCCCCCCEEEEEECCEEEEEEeCCCCCCCcCCCCccchHHHHHHHH
Confidence 7789999999999999874 33 45577899999988889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcE
Q psy17032 80 VGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKF 159 (283)
Q Consensus 80 ~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~ 159 (283)
+||+.||.||++|||||+++|||+||++|+||+++.+++++++ +|++|++|+.+||++|++.+.++|+ .+
T Consensus 79 lGv~~ii~tnA~Gsln~~~~pGdlvi~dd~id~t~~~p~t~~~------~g~~f~~m~~~y~~~Lr~~l~~~a~----~~ 148 (264)
T PRK07823 79 LGVRRVFAPCAVGSLRPELGPGTVVVPDQLVDRTSGRAQTYFD------SGGVHVSFADPYCPTLRAAALGLPG----VV 148 (264)
T ss_pred cCCCEEEEecccccCCCCCCCCCEEEcchhhhccCCCCCCccC------CCccCCCCCcccCHHHHHHHHHHHh----hc
Confidence 9999999999999999999999999999999999988888764 3678999999999999999999998 35
Q ss_pred EeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHH
Q psy17032 160 HDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKEN 239 (283)
Q Consensus 160 ~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~ 239 (283)
+ +|+|+++.||+|||+||+|++|.+|||+|||+++||+++|+|+|+||++|++|||+++|..+.++++|+|+++.++++
T Consensus 149 ~-~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~vPEvilAre~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~ 227 (264)
T PRK07823 149 D-GGTMVVVQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRN 227 (264)
T ss_pred C-CeEEEEeeCCCCCCHHHHHHHHHcCCCEeccCccHHHHHHHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999999999999999999999999887435689999999999999
Q ss_pred HHHHHHHHHHHHHhccccCChhHHHHHHhhhhhcCc
Q psy17032 240 VEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNM 275 (283)
Q Consensus 240 ~~~~~~ll~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 275 (283)
++++.+|+.++|+++++++.| .|.++|+.+.+
T Consensus 228 ~~~~~~ll~~~i~~~~~~~~c----~~~~~l~~~~~ 259 (264)
T PRK07823 228 IERLKRLVRDAIAAVPAERTC----THCRAHAGVTL 259 (264)
T ss_pred HHHHHHHHHHHHHhccccCCC----chhhHhhcCcc
Confidence 999999999999999999999 99999999765
No 5
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=1.4e-62 Score=439.43 Aligned_cols=242 Identities=36% Similarity=0.619 Sum_probs=225.6
Q ss_pred eEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEE
Q psy17032 7 KIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVI 86 (283)
Q Consensus 7 ~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI 86 (283)
+|||||||||+++..+....+...+||||.|+++++.|+++|++|+++.|||++|.|+|++|||+|++|+|+++||+.||
T Consensus 1 ~igiI~Gsgl~~~~~~~~~~~~~~~tpyg~~~~~l~~G~l~g~~Vv~l~RhG~~h~~~~~~V~~~A~i~al~~lGv~~ii 80 (245)
T PRK09136 1 MLAIIGGTGLTQLAGLDIVQRQVVRTPYGAPSGPLTFGTLAGREVVFLARHGHGHTIPPHKVNYRANIWALKQAGATRVL 80 (245)
T ss_pred CEEEEeccccchhhhccccceeEEEcCCCCCcccEEEEEECCEEEEEEecCCCCCCCChHHcCcHHHHHHHHHcCCCEEE
Confidence 49999999999875555566778999999888999999999999999889999999999999999999999999999999
Q ss_pred EecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEE
Q psy17032 87 VSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAV 166 (283)
Q Consensus 87 ~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~ 166 (283)
+||+||||||+++|||+||++||||+++++|+++++++. .+.+|+++.++||++|++.+++++++++++++++|+|+
T Consensus 81 ~t~aaG~l~~~l~~Gdlvi~~d~i~~~~~~p~t~~~~~~---~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~ 157 (245)
T PRK09136 81 AVNTVGGIHADMGPGTLVVPDQIIDYTWGRKSTFFEGDG---EEVTHIDFTHPYSPMLRQRLLAAARAAGVSLVDGGVYA 157 (245)
T ss_pred EecccccCCCCCCCCCEEEEHHHhhccCCCCCCCCCCCC---CCCCCCCCcccCCHHHHHHHHHHHHHcCCcEEeccEEE
Confidence 999999999999999999999999999998898886542 46779999999999999999999999999998779999
Q ss_pred EecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCc-cCHHHHHHHHHHHHHHHHH
Q psy17032 167 CIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNK-VCVADVLKTFKENVEKITK 245 (283)
Q Consensus 167 ~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~-~~~~e~~~~~~~~~~~~~~ 245 (283)
+++||+|||+||++++++||||+||||++||+++|+++|+||++||+|||++.|.. +++ ++++|+++.++++++++.+
T Consensus 158 ~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~A~~~gi~~~~i~~Vtn~a~g~~-~~~~~~~~ev~~~~~~~~~~~~~ 236 (245)
T PRK09136 158 ATQGPRLETAAEIARLERDGCDLVGMTGMPEAALARELGLPYACLALVANWAAGRG-DSAEITMAEIEAALDAAMGRVRE 236 (245)
T ss_pred EeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHHHHHcCCCEEEEEEEeecccCcC-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875 334 8999999999999999999
Q ss_pred HHHHHHH
Q psy17032 246 LFVHIVP 252 (283)
Q Consensus 246 ll~~~l~ 252 (283)
|+.++|.
T Consensus 237 l~~~~i~ 243 (245)
T PRK09136 237 LLERLVR 243 (245)
T ss_pred HHHHHhc
Confidence 9998875
No 6
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.1e-61 Score=425.42 Aligned_cols=243 Identities=44% Similarity=0.707 Sum_probs=221.7
Q ss_pred CCceEEEEeCCCCCCcc-cccccceeeeeCCCCCCcccEEEEEEC--CeEEEEEeccCCCcccCCCccchHHHHHHHHHc
Q psy17032 4 SKIKIGFIGGSGLNNPQ-ILENAQEVAVDTPYGAPSDVLLQGTIQ--GVDCVILARHGRKHTINPSNVNYRANIWALKSV 80 (283)
Q Consensus 4 ~~~~igIIggsgl~~~~-~l~~~~~~~~~~~~G~~~~~~~~G~~~--G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~ 80 (283)
.+++|||||||||+++. .++..+....+||||.|+...+.|++. |.+|.|+.|||++|.|+||+++|+|++|+|+.+
T Consensus 15 ~~~~igiIgGSGl~~l~~~~~~~~~~~~~tpfg~~s~~~~~g~~~~~g~~v~~l~rhGr~H~y~ph~~~~rani~alk~l 94 (262)
T COG0005 15 EMPMIGIIGGSGLYDLADLLEVREPYSDITPFGVPSVPGHAGELVTLGGKVAFLARHGRGHSYPPHSVNYRANIRALKAL 94 (262)
T ss_pred CCccEEEEecccccccccccccceecccCCCCCCCCCceEEEEEeecCceEEEEecCCCCCCCCCCCchHHHHHHHHHHc
Confidence 46899999999999974 344344445689999999999999998 888888889999999999999999999999999
Q ss_pred CCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc--CCc
Q psy17032 81 GCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL--GFK 158 (283)
Q Consensus 81 Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~--g~~ 158 (283)
||+.||.+|++||||++++|||+|+++||||++. ++.+|+++. .+++|++++.+|||+|++.+.++|++. ++.
T Consensus 95 GV~~vi~tnAvGsl~~~~~pGd~vv~~d~Id~t~-r~~~~~~~~----~~~~~~d~s~~y~~~lr~~l~~~a~~~~~~~~ 169 (262)
T COG0005 95 GVERVILTNAVGSLREEYKPGDLVVPDDHIDFTK-RQNPFYGGN----DGVRFVDMSDPYDPELREALAEAAKELRLGHP 169 (262)
T ss_pred CCeEEEEecccccccccCCCCCEEeehhheeccC-CCCcccCCC----CceeeCCCCCcCCHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999999999997 566777543 267899999999999999999999954 455
Q ss_pred EEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHH
Q psy17032 159 FHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKE 238 (283)
Q Consensus 159 ~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~ 238 (283)
.+ +|+|++++||+|||+||++|+|.||||+|||+++||+++|||+|+||++|++|||+++|. +.++||+|+++.+.+
T Consensus 170 ~~-~GvYv~~eGP~feT~AEirm~r~~GaDvVGMS~vPEv~lARe~~l~ya~is~vTn~aag~--~~~lt~eEV~~~~~~ 246 (262)
T COG0005 170 LQ-EGVYVCVEGPRFETPAEIRMFRSLGADVVGMSTVPEVILARELGLCVAALSLVTNYAAGI--GQPLTHEEVLEVAKE 246 (262)
T ss_pred cC-ceEEEEecCCCcCCHHHHHHHHHhCCCcccCcCCcHHHHhHhhCCcEEEEEEeehhhccC--CCCcCHHHHHHHHHH
Confidence 66 799999999999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q psy17032 239 NVEKITKLFVHIVPKI 254 (283)
Q Consensus 239 ~~~~~~~ll~~~l~~l 254 (283)
+..++.+++.++|+++
T Consensus 247 ~~~~~~~l~~~~i~~~ 262 (262)
T COG0005 247 NAEKIAKLLAAAIAKL 262 (262)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999864
No 7
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=100.00 E-value=4.3e-60 Score=428.18 Aligned_cols=258 Identities=41% Similarity=0.735 Sum_probs=234.0
Q ss_pred ceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEE
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHV 85 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~i 85 (283)
|+||||||||++..+.++...+...++|||. .+|+.|+++|++|+++.|||+||.|++++||+++++|+|+++||+.|
T Consensus 2 ~~igII~gsgl~~~~l~~~~~~~~~~~~~g~--~~~~~G~~~g~~Vv~l~~~G~gh~~~~~kVn~~a~~~~l~~~Gv~~I 79 (261)
T PRK08666 2 VRIAIIGGSGVYDPKILENIREETVETPYGE--VKVKIGTYAGEEVAFLARHGEGHSVPPHKINYRANIWALKELGVERI 79 (261)
T ss_pred CcEEEEecCCCCccchhhhcccceeEeeCCC--CEEEEEEECCEEEEEEeCCCCCCccChhhcchHHHHHHHHHCCCCEE
Confidence 6899999999866444444446789999985 48999999999999776899999999999999889999999999999
Q ss_pred EEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeE
Q psy17032 86 IVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTA 165 (283)
Q Consensus 86 I~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~ 165 (283)
|++|+||||||++++||+||++|++||+++++.+++.+.. .+.+|+++.++||++|++.++++++++++++|.+|+|
T Consensus 80 I~tgsaGsl~~~l~~GDiVi~~d~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ggvy 156 (261)
T PRK08666 80 LATSAVGSLNPNMKPGDFVILDQFLDFTKNRHYTFYDGGE---SGVVHVDFTDPYCPELRKALITAARELGLTYHPGGTY 156 (261)
T ss_pred EEeccccccCCCCCCCCEEeehhhhhcCCCCCccccCCCC---CCcCCCCCCcccCHHHHHHHHHHHHHCCCceEeccEE
Confidence 9999999999999999999999999999987777764321 3455788899999999999999999999999966999
Q ss_pred EEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHH
Q psy17032 166 VCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITK 245 (283)
Q Consensus 166 ~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ 245 (283)
++++||+|+|++|.+++++||+|+||||++||+++|+++|+||++||+|||++++.. +.+++|+||++.+++++.++.+
T Consensus 157 ~~~~Gp~fet~ae~~~~~~~gad~V~Me~~~e~~~A~~~gi~~~~i~~vsn~a~~~~-~~~~~~~e~~~~~~~~~~~~~~ 235 (261)
T PRK08666 157 VCTEGPRFETAAEIRMFRILGGDLVGMTQVPEAVLARELEMCYATVAIVTNYAAGIS-PTKLTHSEVVELMAQNSENIKK 235 (261)
T ss_pred EEeeCCCcCCHHHHHHHHHcCCCEEccchHHHHHHHHHCCCcEEEEEEEeeccccCC-CCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754 6789999999999999999999
Q ss_pred HHHHHHHhccccCChhHHHHHHhhhhhc
Q psy17032 246 LFVHIVPKIAAKDWTNEITELKSVVETS 273 (283)
Q Consensus 246 ll~~~l~~l~~~~~~~~~~~~~~~~~~~ 273 (283)
++.++++++++++.| .|..+++.+
T Consensus 236 ll~~~~~~~~~~~~~----~~~~~~~~~ 259 (261)
T PRK08666 236 LIMKAIELIPKERRC----PCKDALKGA 259 (261)
T ss_pred HHHHHHHhCCcCCCC----chHHHHhhc
Confidence 999999999999999 899998874
No 8
>KOG3985|consensus
Probab=100.00 E-value=3e-60 Score=406.64 Aligned_cols=274 Identities=55% Similarity=0.935 Sum_probs=264.6
Q ss_pred CceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCE
Q psy17032 5 KIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTH 84 (283)
Q Consensus 5 ~~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~ 84 (283)
..++||||||||++++.|+++.+...+||||.|+..+..|+++|..++++.|||+.|.|.|.+|||+||+|+|+.+||+.
T Consensus 9 ~VklGIIGGsGl~dp~ile~~ve~~v~TP~G~pSd~v~~g~i~gv~cvllARHGr~H~imPt~Vn~rANiwALk~~gc~~ 88 (283)
T KOG3985|consen 9 TVKLGIIGGSGLYDPDILEDPVELVVPTPWGKPSDPVIIGQISGVHCVLLARHGRKHDIMPTKVNFRANIWALKSLGCTA 88 (283)
T ss_pred eEEEEEeccCCCCCchhhhcchhhcCCCCCCCcCCceeeeecCCeEEEEEeccccCCccCCCcCchhHhHHHHHhCCCcE
Confidence 47999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeee
Q psy17032 85 VIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGT 164 (283)
Q Consensus 85 iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~ 164 (283)
||.+.+||+|+++++|||+|+|+++|+.+..|+.|||++.+....|..|.++..+||+++++.+.+.+++++++.|+.|+
T Consensus 89 ii~~tAcGSLre~I~Pgd~v~p~q~IDrTt~R~~tffdg~~~~a~gVcHv~~~~pf~~k~reil~~~a~~l~~~~hd~~t 168 (283)
T KOG3985|consen 89 IISFTACGSLREEIKPGDFVLPDQIIDRTTGRPSTFFDGSYDQAGGVCHVPFGPPFSQKLREILISTAKELTNPHHDDGT 168 (283)
T ss_pred EEEeeccccccccCCCccEecchhhhhhhccCccccccCcccCCCceEeccCCCCcCHHHHHHHHHHHHHhcCCcCCcee
Confidence 99999999999999999999999999999989999999987777788899999999999999999999999999999999
Q ss_pred EEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHH
Q psy17032 165 AVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKIT 244 (283)
Q Consensus 165 ~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~ 244 (283)
+++++||+|.|+||..++|+|||+++.|+..||+.+|+|+|+||..+++.||+.+|....++++.+.|++..+.+..+.+
T Consensus 169 vVciEGPrFStRAES~mfR~wGa~vINMt~iPE~~LAkEagi~Y~~iamaTDYDcWr~~ee~Vtve~Vm~~~~~N~~kak 248 (283)
T KOG3985|consen 169 VVCIEGPRFSTRAESKMFRSWGASVINMTVIPEAKLAKEAGIPYQMIAMATDYDCWRMEEEPVTVETVMKTLANNVRKAK 248 (283)
T ss_pred EEEeeCCccchHHHHHHHHHhccceeeeeechHHHHHHhcCcchhhheeccchhhhhccCCCccHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876789999999999999999999
Q ss_pred HHHHHHHHhccccCChhHHHHHHhhhhhcCcCCC
Q psy17032 245 KLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQ 278 (283)
Q Consensus 245 ~ll~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 278 (283)
.|+.+++.++.+..|-.++-.+|++..++.|+.+
T Consensus 249 ~ll~~av~~i~k~~ws~~~~nlk~~v~~si~~~~ 282 (283)
T KOG3985|consen 249 ILLLEAVGSIAKEDWSETGLNLKGSVQNSIMTKP 282 (283)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999875
No 9
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=100.00 E-value=9.6e-59 Score=414.61 Aligned_cols=239 Identities=27% Similarity=0.411 Sum_probs=222.2
Q ss_pred eEEEEeCCCCCCc-ccccccceeeeeCCCCCC-------cccEEEEEECCeEEEEEeccCCCcccCCCccchHH-HHHHH
Q psy17032 7 KIGFIGGSGLNNP-QILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRA-NIWAL 77 (283)
Q Consensus 7 ~igIIggsgl~~~-~~l~~~~~~~~~~~~G~~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a-~~~~l 77 (283)
.+|||+||||+.+ +.+++...+++++++||| +++|+.|+++|++|+++ +|++|.|+++.+++.+ ++|+|
T Consensus 1 ~~~ii~Gsgl~~~~~~~~~~~~i~y~~ip~~p~~~v~gh~g~l~~G~l~g~~Vv~~--~Gr~h~y~g~~~~~~~~~i~~l 78 (248)
T TIGR01699 1 RVAFILGSGLGALADQIENAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCM--KGRGHFYEGRGMTIMTDAIRTF 78 (248)
T ss_pred CEEEEeeCcHHHHHHhccCCEEEECCCCCCCCCCcccCCcceEEEEEECCEEEEEE--eCCCcccCCcchhhhcchHHHH
Confidence 4899999999986 788889999998888998 57899999999999997 8999999999999885 89999
Q ss_pred HHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCC
Q psy17032 78 KSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF 157 (283)
Q Consensus 78 ~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~ 157 (283)
+++||+.||++|+||||||++++||+||++||+||++.+|+++++. ..++++|++|+.+||++|++.++++++++++
T Consensus 79 ~~lGv~~iI~t~aaG~l~~~l~~Gdlvi~~d~i~~t~~~p~~~~~~---~~~g~~~~~~~~~yd~~Lr~~~~~~a~~~~~ 155 (248)
T TIGR01699 79 KLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMPGTPMVGLND---DRFGERFFSLANAYDAEYRALLQKVAKEEGF 155 (248)
T ss_pred HHcCCCEEEEecceeccCCCCCCCCEECHHHHhhcCCCCCccCCCc---ccCCCCCCCCCCccCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999888765533 2356789999999999999999999999999
Q ss_pred cEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHH
Q psy17032 158 KFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFK 237 (283)
Q Consensus 158 ~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~ 237 (283)
+++ +|+|+++.||+|||+||++++++||||+||||++||+++|+++|+||++||+|||++++.. +.+++|+|+++.++
T Consensus 156 ~~~-~Gvy~~~~GP~FeT~AE~r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~-~~~lt~~ev~~~~~ 233 (248)
T TIGR01699 156 PLT-EGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLS-DVKLSHAQTLAAAE 233 (248)
T ss_pred cee-eEEEEEeeCCCcCCHHHHHHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcCcC-CCCCCHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999998764 67899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17032 238 ENVEKITKLFVHIVP 252 (283)
Q Consensus 238 ~~~~~~~~ll~~~l~ 252 (283)
++.+++.+|+.++++
T Consensus 234 ~~~~~~~~ll~~~~~ 248 (248)
T TIGR01699 234 LSKQNFINLICGFLR 248 (248)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998874
No 10
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=100.00 E-value=2.8e-58 Score=407.91 Aligned_cols=228 Identities=21% Similarity=0.335 Sum_probs=209.7
Q ss_pred eEEEEeCCCCCCc-ccccccceeeeeCCCCCC-------cccEEEEEECCeEEEEEeccCCCcccCCCccch-HHHHHHH
Q psy17032 7 KIGFIGGSGLNNP-QILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILARHGRKHTINPSNVNY-RANIWAL 77 (283)
Q Consensus 7 ~igIIggsgl~~~-~~l~~~~~~~~~~~~G~~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~-~a~~~~l 77 (283)
++||||||||+++ +.+++..++++..++||| +++++.|+++|++|+++ .|++|.|+|+.+|+ ++++|+|
T Consensus 1 ~i~iI~GSGl~~~~~~~~~~~~ipY~~ip~fp~~tv~gH~g~l~~G~l~g~~V~~l--~Gr~H~yeg~~~~~v~~~i~al 78 (237)
T TIGR01698 1 DMAIVLGSGWGGAVEALGEPVELPYAEIPGFPAPTVSGHAGELIRVRIGDGPVLVL--GGRTHAYEGGDARAVVHPVRTA 78 (237)
T ss_pred CEEEEEeCCHHHHHHhhcCceEeecccCCCCCCCcccCccceEEEEEECCEEEEEE--cCCCcccCCCcHHHhHHHHHHH
Confidence 5899999999886 677777677777666787 57899999999999999 59999999999998 7999999
Q ss_pred HHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCC
Q psy17032 78 KSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF 157 (283)
Q Consensus 78 ~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~ 157 (283)
+.+||+.||.||++||||++++|||+|+++||||+++.+|+ .|++|++|+.+||++|| ++|++.++
T Consensus 79 ~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~~~pl----------~g~~~~d~~~~yd~~Lr----~~a~~~~~ 144 (237)
T TIGR01698 79 RATGAETLILTNAAGGLRQDWGPGTPVLISDHINLTARSPL----------IGPRFVDLTDAYSPRLR----ELAERVDP 144 (237)
T ss_pred HHcCCCEEEEEcccccCCCCCCCCCEEeechhcccCCCCCC----------CCCccCCCCcccCHHHH----HHHHHcCC
Confidence 99999999999999999999999999999999999987765 24689999999999999 55677889
Q ss_pred cEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHH
Q psy17032 158 KFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFK 237 (283)
Q Consensus 158 ~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~ 237 (283)
+++ +|+|++++||+|||+||+|++|+||||+|||+++||+++|||+||||++|++|||+|.|.. ++++||+|+++.++
T Consensus 145 ~~~-~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g~~-~~~~th~ev~~~~~ 222 (237)
T TIGR01698 145 PLA-EGVYAWFPGPHYETPAEIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAGIT-GTPLSHAEVKAAGA 222 (237)
T ss_pred Ccc-CEEEEEecCCCcCCHHHHHHHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccCCC-CCCCCHHHHHHHHH
Confidence 988 9999999999999999999999999999999999999999999999999999999998874 57899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17032 238 ENVEKITKLFVHIVP 252 (283)
Q Consensus 238 ~~~~~~~~ll~~~l~ 252 (283)
+++.++.+++.++|+
T Consensus 223 ~~~~~~~~ll~~~i~ 237 (237)
T TIGR01698 223 AAGTRLAALLADIIK 237 (237)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998864
No 11
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=100.00 E-value=6.3e-56 Score=402.88 Aligned_cols=244 Identities=26% Similarity=0.408 Sum_probs=217.0
Q ss_pred CCceEEEEeCCCCCCc-ccccccceeeeeCCCCCC-------cccEEEEEECCeEEEEEeccCCCcccCCCccc-hHHHH
Q psy17032 4 SKIKIGFIGGSGLNNP-QILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILARHGRKHTINPSNVN-YRANI 74 (283)
Q Consensus 4 ~~~~igIIggsgl~~~-~~l~~~~~~~~~~~~G~~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~-~~a~~ 74 (283)
.+|+|||||||||+++ +.+++..++++..++||| +++|+.|+++|++|+++ .|+.|.|+++... .++++
T Consensus 20 ~~~~i~iI~GsGl~~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~--~g~~H~yeG~~~~~~~a~i 97 (272)
T PRK08202 20 FKPEIGLILGSGLGALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAM--QGRFHYYEGYSMEAVTFPV 97 (272)
T ss_pred CCCCEEEEeCCchhHHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEE--ccCCcccCCCCHHHHHHHH
Confidence 4689999999999986 667777677776544555 57899999999999999 5999999876544 34689
Q ss_pred HHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q psy17032 75 WALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKE 154 (283)
Q Consensus 75 ~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~ 154 (283)
|+|+++||+.||++|+||||||++++||+||++|++|+++.++++++.. ..++++|+++.++||++|++.+.+++++
T Consensus 98 ~~l~~lGv~~II~tgaaGsL~~~l~~GDiVi~~d~i~~~~~~~~~g~~~---~~~~~~~~~~~~~~d~~L~~~l~~~a~~ 174 (272)
T PRK08202 98 RVMKALGVETLIVTNAAGGLNPDFGPGDLMLISDHINLTGRNPLIGPND---DEFGPRFPDMSDAYDPELRALAKKVAKE 174 (272)
T ss_pred HHHHHcCCCEEEEecccccCCCCCCCCCEEEEchhhhhCCCCcccCCCc---ccCCCccCCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877654432 1256789999999999999999999999
Q ss_pred cCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHH
Q psy17032 155 LGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLK 234 (283)
Q Consensus 155 ~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~ 234 (283)
.++++| +|+|++++||+|+|++|.+++++||||+||||++||+++|+++|+||++||+|||++++.+ +++++|+||++
T Consensus 175 ~~~~~~-~G~y~~~~Gp~feT~aE~~~~~~~Gad~VgMe~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~-~~~~~~~ev~~ 252 (272)
T PRK08202 175 LGIPLQ-EGVYVGVSGPSYETPAEIRMLRTLGADAVGMSTVPEVIVARHCGLKVLGISCITNLAAGIS-DEPLSHEEVLE 252 (272)
T ss_pred cCCcee-eEEEEEeeCCCcCCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCcEEEEEEEeccCcCCC-CCCCCHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999998753 57899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy17032 235 TFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 235 ~~~~~~~~~~~ll~~~l~~l 254 (283)
.+++++.++.+|+.++|+++
T Consensus 253 ~~~~~~~~~~~l~~~~i~~~ 272 (272)
T PRK08202 253 VAERAAPKFGRLVKAILARL 272 (272)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998764
No 12
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=100.00 E-value=9.4e-54 Score=382.73 Aligned_cols=240 Identities=52% Similarity=0.890 Sum_probs=217.8
Q ss_pred eEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEE
Q psy17032 7 KIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVI 86 (283)
Q Consensus 7 ~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI 86 (283)
|+|||||||++++..+.+..+...+||||.++++++.|+++|++|+++.|||++|.|+|+.||+++++++|+++||+.||
T Consensus 1 ~~~ii~gs~~~~~~~~~~~~~~~~~tp~g~~~~~~~~G~~~g~~vv~~~~~G~g~~~~~~~vn~~a~~~~L~~~Gv~~iI 80 (241)
T TIGR01694 1 MIGVIGGSGLYDLEGLKDVEEVNVDTPYGNPSAPIVVGRVAGVDVAFLPRHGRGHDIPPHEVNYRANIWALKSLGVKYVI 80 (241)
T ss_pred CEEEEeccccccccccccceEEEEECCCCCCCCCEEEEEECCEEEEEEeCCCCCCccChHHCCcHHHHHHHHHcCCCEEE
Confidence 68999999998876677888889999999877899999999999999768999999999999999899999999999999
Q ss_pred EecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEE
Q psy17032 87 VSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAV 166 (283)
Q Consensus 87 ~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~ 166 (283)
++|+||||+|++++||+||+++++|++.+++.++++... ..|.++..+||++|++.+.++++++++++|.+|+|+
T Consensus 81 ~~GsaG~l~~~l~~GDlVI~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~~G~~~ 155 (241)
T TIGR01694 81 SVNAVGSLREEYPPGDLVVPDQFIDRTSGRPSTFFDGGK-----VVHVDFGDPYCEDLRQRLIESLRRLGLTVHDGGTYV 155 (241)
T ss_pred EeccccccCCCCCCCCEEEEhhHhhccCCCCCccCCCCc-----cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEeceEEE
Confidence 999999999999999999999999999876666554321 235566677999999999999999999998669999
Q ss_pred EecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHH
Q psy17032 167 CIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKL 246 (283)
Q Consensus 167 ~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~l 246 (283)
+++||+|+|++|.++|+++|+++||||+++|+++|+++|+|+++|++|||.+++.. +++++|+|+.+.++++...+.+|
T Consensus 156 ~~~G~~f~t~~e~~~~~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~-~~~~~~~e~~~~~~~~~~~~~~~ 234 (241)
T TIGR01694 156 CTEGPRFSTRAESRMFKSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCWIS-ADHVTAEEVEEVMGENVEKAKRI 234 (241)
T ss_pred eCcCCCcCCHHHHHHHHHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeeccccCC-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987653 67899999999999999988889
Q ss_pred HHHHHH
Q psy17032 247 FVHIVP 252 (283)
Q Consensus 247 l~~~l~ 252 (283)
+.++|+
T Consensus 235 ~~~~~~ 240 (241)
T TIGR01694 235 LLEAIK 240 (241)
T ss_pred HHHHhh
Confidence 888875
No 13
>KOG3984|consensus
Probab=100.00 E-value=4.1e-52 Score=358.63 Aligned_cols=248 Identities=26% Similarity=0.420 Sum_probs=224.8
Q ss_pred CCceEEEEeCCCCCCc-ccccccceeeeeCCCCCC-------cccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHH
Q psy17032 4 SKIKIGFIGGSGLNNP-QILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANI 74 (283)
Q Consensus 4 ~~~~igIIggsgl~~~-~~l~~~~~~~~~~~~G~~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~ 74 (283)
.+|++||||||||+.+ +.+.....++++.+++|| ++++++|+++|++|+++ .||+|.|++...... -++
T Consensus 23 ~rpk~gIICGSgLg~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~m--qgrfh~yegy~L~~~tfpv 100 (286)
T KOG3984|consen 23 IRPKVGIICGSGLGGLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAM--QGRFHSYEGYPLAKCTFPV 100 (286)
T ss_pred cCCceEEEecCCcchhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEE--cccccccCCccHHHhhhhH
Confidence 4799999999999998 788888888888777887 46799999999999999 799999987544322 259
Q ss_pred HHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH
Q psy17032 75 WALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKE 154 (283)
Q Consensus 75 ~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~ 154 (283)
++++.+|++.++.|++|||+|+.+++||+++..||||+.+....+++.|+|++++|++|+.++..||.+|++++.++++.
T Consensus 101 rVm~l~Gv~~lvvTnaAggin~~f~vgdiMli~DHin~~G~agq~pl~Gpnd~rfG~rf~a~sdAYd~~lr~~a~~~~K~ 180 (286)
T KOG3984|consen 101 RVMQLLGVRILVVTNAAGGINPKFAVGDIMLIKDHINLPGLAGQNPLRGPNDPRFGVRFPALSDAYDKDLRQKALEIGKA 180 (286)
T ss_pred HHHHHcCceEEEEeccccCcCcccccccEEEEecccCCccccCCCCCCCCCcccccccccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999998
Q ss_pred cCC--cEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCC---CCccCH
Q psy17032 155 LGF--KFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDT---GNKVCV 229 (283)
Q Consensus 155 ~g~--~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~---~~~~~~ 229 (283)
.++ .+| +|+|+++.||+|||+||.|++|.+|+|+||||++||+++||++|++++++++|||.+.-.++ +.+++|
T Consensus 181 m~iqr~lh-eGvy~~vgGP~~eT~AE~rmlr~mg~dAVGMStvpEVivArHcG~kVlafslITn~~~~d~s~sa~~ev~h 259 (286)
T KOG3984|consen 181 MGIQRTLH-EGVYACVGGPIFETRAESRMLRTMGADAVGMSTVPEVIVARHCGLKVLAFSLITNKAVVDESASADVEVDH 259 (286)
T ss_pred hcccchhh-cceEEEecCCccccHHHHHHHHHhCcccccccccchheeeccCCcEEEEEEEEeccccccCchhccccCCH
Confidence 886 589 99999999999999999999999999999999999999999999999999999998854321 357899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 230 ADVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 230 ~e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
+|+++..+.+++++.+++..++..+
T Consensus 260 ~evl~v~~~a~~~~~~lVs~lm~~i 284 (286)
T KOG3984|consen 260 DEVLEVGKQAAQACSDLVSRLMYEI 284 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhc
Confidence 9999999999998888988887665
No 14
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=100.00 E-value=2.5e-51 Score=368.51 Aligned_cols=236 Identities=25% Similarity=0.384 Sum_probs=199.6
Q ss_pred eEEEEeCCCCCCc-ccccccceeeeeCCCCCC-------cccEEEEEECCeEEEEEeccCCCcccC---CCccchHHHHH
Q psy17032 7 KIGFIGGSGLNNP-QILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILARHGRKHTIN---PSNVNYRANIW 75 (283)
Q Consensus 7 ~igIIggsgl~~~-~~l~~~~~~~~~~~~G~~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~---~~~V~~~a~~~ 75 (283)
++|||+||||+++ +.+++..+++++..+||| +++++.|+++|++|+++ .|+.|.|+ ++.++| ++|
T Consensus 1 ~~~iv~gsgl~~~~~~~~~~~~~~~~~ip~~~~~~~~g~~~~~~~G~i~g~~Vv~~--~~~iH~~~Gk~~a~i~~--~~~ 76 (249)
T TIGR01700 1 DIAIILGSGLGPLAEKVEDATIIDYSEIPHFPQSTVVGHAGNLVFGILGGKPVVAM--QGRFHMYEGYDMAKVTF--PVR 76 (249)
T ss_pred CEEEEecCcHHHHHHhccCcEEEEhhhcCCCCCCCCCCCCccEEEEEECCEEEEEE--cCCccccCCcCHHHccH--HHH
Confidence 5899999999986 788888888887544565 56899999999999999 45555554 444444 399
Q ss_pred HHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc
Q psy17032 76 ALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL 155 (283)
Q Consensus 76 ~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~ 155 (283)
++++|||+.||++|+||||++++++||+||++|++++|..+++.++ +...++..|+++..+||++|++.+.++++++
T Consensus 77 ll~~~gv~~II~~gsaGsl~~~l~~GDiVi~~d~i~~~~~~~l~g~---~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~ 153 (249)
T TIGR01700 77 VMKLLGVETLVVTNAAGGINPEFKVGDLMLIRDHINLPGFNPLRGP---NEERFGVRFPDMSDAYDRDLRQKAHSIAKQL 153 (249)
T ss_pred HHHHcCCCEEEEecccccCCCCCCCCCEEEEhhHhhCCCCCCccCC---CCcCCCCeeCCCCcccCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999975554322 2122445678888899999999999999999
Q ss_pred CCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccC-HHHHHH
Q psy17032 156 GFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVC-VADVLK 234 (283)
Q Consensus 156 g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~-~~e~~~ 234 (283)
+++++ +|+|++++||+|+|++|.+++++||||+||||++||+++|+++|+||++||+|||+++|.+ +++++ ++++.+
T Consensus 154 ~~~~~-~G~y~~~sGp~F~t~aE~~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~~~-~~~~~~~~~v~~ 231 (249)
T TIGR01700 154 NIPLQ-EGVYVMLGGPSYETPAEVRLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAGIL-DYELSVHEEVME 231 (249)
T ss_pred CCccc-eEEEEEeeCCCcCCHHHHHHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccccC-cCCCCHHHHHHH
Confidence 99998 9999999999999999999999999999999999999999999999999999999998753 46789 677777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17032 235 TFKENVEKITKLFVHIV 251 (283)
Q Consensus 235 ~~~~~~~~~~~ll~~~l 251 (283)
.+++++..+.+|+.++|
T Consensus 232 ~~~~~~~~~~~ll~~~i 248 (249)
T TIGR01700 232 AAKQAAEKLEKFVSLLI 248 (249)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777776677776654
No 15
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=100.00 E-value=4.8e-49 Score=353.69 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=194.7
Q ss_pred eEEEEeCCCCCCc-ccccccceeeeeCCCCC----C-------cccEEEEEECCeEEEEEeccCCCcccCCCccchH--H
Q psy17032 7 KIGFIGGSGLNNP-QILENAQEVAVDTPYGA----P-------SDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR--A 72 (283)
Q Consensus 7 ~igIIggsgl~~~-~~l~~~~~~~~~~~~G~----~-------~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~--a 72 (283)
+|||||||||+++ +.+ ....++|||. | +++|+.|+++|++|+++ +|+.|.|+++ ++.+ +
T Consensus 1 ~~~ii~gsg~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~g~~Vv~~--~~gih~~~Gk-~~~a~~~ 73 (248)
T TIGR01697 1 DVAIILGSGLGALADQV----EDAVIIPYEKIPGFPVSTVVGHAGELVFGRLGGKPVVCM--QGRFHYYEGY-DMATVTF 73 (248)
T ss_pred CEEEEeeCCcchhhhhc----ccceEeeCccCCCCCCcccCCCCccEEEEEECCEEEEEE--cCCCcccCCC-CHHHHHH
Confidence 5899999999884 333 3345555554 3 67899999999999999 5778888664 5533 5
Q ss_pred HHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHH
Q psy17032 73 NIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSL 152 (283)
Q Consensus 73 ~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a 152 (283)
++|+|+++|++.||++|+||||+|++++||+||++|++++|+++++.+... ..++..|+.+.++||++|++.+.+++
T Consensus 74 ~~~~l~~~Gv~~II~~GsaGsl~~~l~~GDiVI~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~L~~~l~~~a 150 (248)
T TIGR01697 74 PVRVMKLLGVEILVVTNAAGGLNPDFKPGDLMIIKDHINLPGLNPLVGPND---DRFGTRFPDLSNAYDRELRKLAQDVA 150 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEhhhhhcCCCCCccCCCc---ccCCceeCCCCcccCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999998654322211 11334577777789999999999999
Q ss_pred HHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHH
Q psy17032 153 KELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADV 232 (283)
Q Consensus 153 ~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~ 232 (283)
++.++++| .|+|++++||+|+|++|.+++++||+++||||++||+++|+++|+||++||+|||.++|.. +++++|+++
T Consensus 151 ~~~~~~~~-~G~~~~~~G~~f~t~~e~~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~~-~~~~~~~~~ 228 (248)
T TIGR01697 151 KELGFPLT-EGVYVMVSGPSYETPAEIRMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGIT-DVPLSHEEV 228 (248)
T ss_pred HHcCCcee-eEEEEEEECCCcCCHHHHHHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCcccC-CCCCCHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999998743 578999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17032 233 LKTFKENVEKITKLFVHIV 251 (283)
Q Consensus 233 ~~~~~~~~~~~~~ll~~~l 251 (283)
.+.++++++.+.++|.++|
T Consensus 229 ~~~~~~~~~~~~~ll~~~~ 247 (248)
T TIGR01697 229 LAAAAAAAERFISLLEDII 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9888766665666666554
No 16
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=1e-33 Score=252.48 Aligned_cols=223 Identities=12% Similarity=0.051 Sum_probs=169.3
Q ss_pred ceEEEEeCCCCCCccccccccee-eeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCC
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEV-AVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCT 83 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~-~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~ 83 (283)
++||||+++. .|+..|.+.... ..... + +.+||.|+++|++|+++ ++|+|+ ||++ ++.+++.+|+++
T Consensus 2 ~~IgIi~Am~-~E~~~l~~~l~~~~~~~~-~--~~~~~~g~~~~~~vv~~-~sGiGk------vnAA~~~~~li~~f~~~ 70 (236)
T PRK06714 2 KRIAIVAAWE-PELTYLHQSYPSERIEKR-A--AWEFHFHTINDLEIISV-ITGVGK------VSCASCVQLLISEFQPD 70 (236)
T ss_pred CeEEEEeeCH-HHHHHHHHhccccceEEE-c--CeEEEEEEECCEEEEEE-eCCCCH------HHHHHHHHHHHHhCCCC
Confidence 4799999955 233444332222 22222 2 44899999999999999 699996 8877 577888999999
Q ss_pred EEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCc-ccCCCCCCCCHHHHHHHHHHHHHcCCcEEee
Q psy17032 84 HVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGV-LHIPMEPAFDNSTRQIIIDSLKELGFKFHDK 162 (283)
Q Consensus 84 ~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~-~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~ 162 (283)
.||++|+|||+++++++||+||+++.++||.+. +.++... ++. ......++.|+.|.+.+++... +.+++ .
T Consensus 71 ~IIn~G~aG~l~~~l~iGDvVi~~~~~~~D~~~--~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~-~ 142 (236)
T PRK06714 71 ELFMTGICGSLSNKVKNGHIVVALNAIQHDVTA--AGSGEDV---FNLYNGRTAPIETTKSLVRRIKKIRS--YDPIH-F 142 (236)
T ss_pred EEEEEEcccCCCCCCCCCCEEEECeeeeccCcc--ccCCccc---ccccCCccccccCCHHHHHHHHHHhc--cCCeE-E
Confidence 999999999999999999999999999998642 2221110 010 0011135568999988876643 45788 8
Q ss_pred eeEEEecCCcccCHHHHH-H-HHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHH
Q psy17032 163 GTAVCIEGPRFSSRAESN-L-FRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENV 240 (283)
Q Consensus 163 G~~~~~~Gp~fet~aE~~-~-~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~ 240 (283)
|++ .+||+|.+..+.+ . ++.+|+++||||++++|++|+.+|+||++||+|||.++. ++..+|++|+..+.+++
T Consensus 143 G~i--~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA~vc~~~~vP~l~IR~ISD~a~~---~~~~~~~~f~~~aa~~s 217 (236)
T PRK06714 143 GTF--LSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFAYVCQINKKPFLCLKAASDQAND---KTKEEQKIFKMLACERA 217 (236)
T ss_pred eEE--EecCeecCCHHHHHHHHHHCCCeEEEehHHHHHHHHHHhCCCEEEEEEeccCCCC---ccccCHHHHHHHHHHHH
Confidence 997 5999998655543 3 467999999999999999999999999999999999864 56789999988777664
Q ss_pred HHHHHHHHHHHHhcc
Q psy17032 241 EKITKLFVHIVPKIA 255 (283)
Q Consensus 241 ~~~~~ll~~~l~~l~ 255 (283)
.+++.++|+++.
T Consensus 218 ---a~~~~~~l~~~~ 229 (236)
T PRK06714 218 ---CEHLIAFLRVYE 229 (236)
T ss_pred ---HHHHHHHHHHhH
Confidence 468999998875
No 17
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=100.00 E-value=6.2e-33 Score=247.09 Aligned_cols=222 Identities=15% Similarity=0.217 Sum_probs=169.5
Q ss_pred ceEEEEeCCCCCCcccccccce-eeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCC
Q psy17032 6 IKIGFIGGSGLNNPQILENAQE-VAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCT 83 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~-~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~ 83 (283)
.+||||+++.. |...|.+... ...... + +.++|+|+++|++|+++ .+|+|+ +|++ ++.+++.+++++
T Consensus 2 ~~i~Ii~Am~~-E~~~l~~~l~~~~~~~~-~--~~~~~~G~~~g~~v~v~-~sGiG~------vnAA~~~~~li~~f~~~ 70 (233)
T PRK14697 2 NRIGIIGAMQI-EIDLLLEKLVVQEEQII-A--GMPFYVGEFMGTEVIVT-RCGVGK------VNAAACTQTLIHKFDVD 70 (233)
T ss_pred ceEEEEecCHH-HHHHHHHHhhccceEEE-C--CeEEEEEEECCEEEEEE-ECCCCH------HHHHHHHHHHHHhcCCC
Confidence 47999999542 3333332222 222223 2 44799999999999999 599995 8877 567788899999
Q ss_pred EEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH--cCCcEEe
Q psy17032 84 HVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKE--LGFKFHD 161 (283)
Q Consensus 84 ~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~--~g~~~~~ 161 (283)
.||++|+|||+++++++||+||++..+++|.+. +.+.+. .+.. ..++.|.+|.+.+.+.+.. .+++++
T Consensus 71 ~II~~G~AG~l~~~l~iGDvVi~~~~~~~D~~~--~~~~~~-----~p~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~- 140 (233)
T PRK14697 71 AIINTGVAGGLHPDVKVGDIVISTNVTHHDVSK--TQMKNL-----FPFQ--EEFIASKELVELARKACNSSSLHIEIH- 140 (233)
T ss_pred EEEEEecccCCCCCCCcCCEEEECeeEEcCCCh--hhhccc-----CCCC--cccCCCHHHHHHHHHHhhhccCCccEE-
Confidence 999999999999999999999999999998742 112111 0111 1356799999998887754 467888
Q ss_pred eeeEEEecCCcccCHHH-HHHH-HHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHH
Q psy17032 162 KGTAVCIEGPRFSSRAE-SNLF-RSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKEN 239 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE-~~~~-~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~ 239 (283)
.|++ .+||+|.+..+ .+.+ +++++++||||+++++++|+.+|+||++||+|||.++. ++..++++|.+.+.+
T Consensus 141 ~G~i--~SgD~fi~~~~~~~~l~~~~~~~~vdME~aAva~v~~~~~vpfl~iR~ISD~a~~---~~~~~~~~~~~~aa~- 214 (233)
T PRK14697 141 EGRI--VSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADD---EAQISYDDFAKTAAN- 214 (233)
T ss_pred EeEE--EEcCeecCCHHHHHHHHHhcCCeEEEehHHHHHHHHHHcCCCEEEEEEeccCCCC---CCcCCHHHHHHHHHH-
Confidence 8998 58999985444 4444 67999999999999999999999999999999999864 567889999865554
Q ss_pred HHHHHHHHHHHHHhccc
Q psy17032 240 VEKITKLFVHIVPKIAA 256 (283)
Q Consensus 240 ~~~~~~ll~~~l~~l~~ 256 (283)
++.+++.++|+++..
T Consensus 215 --~~~~~~~~~l~~~~~ 229 (233)
T PRK14697 215 --YCSEIIVEMLKNISS 229 (233)
T ss_pred --HHHHHHHHHHHHhhh
Confidence 455788888887754
No 18
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=100.00 E-value=1.1e-32 Score=244.61 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=171.7
Q ss_pred eEEEEeCCCCCCccccccccee-eeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCCE
Q psy17032 7 KIGFIGGSGLNNPQILENAQEV-AVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCTH 84 (283)
Q Consensus 7 ~igIIggsgl~~~~~l~~~~~~-~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~~ 84 (283)
+||||+++.. |+..|...... ...... +.++|+|+++|++|+++ .+|+|+ +|++ ++.+++.+++++.
T Consensus 1 ~i~ii~Am~~-E~~~l~~~l~~~~~~~~~---~~~~~~g~~~g~~v~i~-~sGiG~------vnAA~~~~~li~~~~p~~ 69 (228)
T TIGR01704 1 KIGIIGAMEE-EVTLLRDKIENRQTISLG---GCEIYTGQLNGTEVALL-KSGIGK------VAAALGATLLLEHCKPDV 69 (228)
T ss_pred CEEEEecCHH-HHHHHHHHhhcCceEEEC---CeEEEEEEECCEEEEEE-ECCCCH------HHHHHHHHHHHHhCCCCE
Confidence 4999999552 33433322222 222233 34899999999999999 599995 8877 4667889999999
Q ss_pred EEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeee
Q psy17032 85 VIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGT 164 (283)
Q Consensus 85 iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~ 164 (283)
||++|+|||+++++++||+||++..++++.+. +.+....+ ..+.++ ..+..|++|.+.+.+.+++++.+++ .|.
T Consensus 70 II~~G~aG~l~~~l~~GDvvi~~~~~~~d~~~--~~~~~~~g--~~~~~~-~~~~~d~~L~~~~~~~~~~~~~~~~-~G~ 143 (228)
T TIGR01704 70 IINTGSAGGLAPTLKVGDIVVSDEARYHDADV--TAFGYEYG--QLPGCP-AGFKADDKLIAAAEACIAELNLNAV-RGL 143 (228)
T ss_pred EEEEeeccCCCCCCccCCEEEEEEEEEccCcc--cccCCcCC--cCCCCC-ceeeCCHHHHHHHHHHHHhcCCCeE-EEE
Confidence 99999999999999999999999999887642 22222211 012222 2457899999999999999999999 898
Q ss_pred EEEecCCcccCHHH-HHHH-HHc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHH
Q psy17032 165 AVCIEGPRFSSRAE-SNLF-RSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVE 241 (283)
Q Consensus 165 ~~~~~Gp~fet~aE-~~~~-~~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~ 241 (283)
+ .|||.|.+..+ .+.+ +++ ++++||||+++++++|+.+|+||++||.|||.++. +...+++++++.+++++
T Consensus 144 i--~T~d~f~~~~~~~~~l~~~~~~~~~vdME~aAva~va~~~~ip~~~iR~ISD~a~~---~~~~~~~~~~~~aa~~~- 217 (228)
T TIGR01704 144 I--VSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQ---QSHLSFDEFLAVAAKQS- 217 (228)
T ss_pred E--EEcChhcCCHHHHHHHHHHCCcccEecccHHHHHHHHHHhCCCEEEEEEecccCCC---ccccCHHHHHHHHHHHH-
Confidence 7 59999976555 4555 457 89999999999999999999999999999999854 45678999988766654
Q ss_pred HHHHHHHHHHHhc
Q psy17032 242 KITKLFVHIVPKI 254 (283)
Q Consensus 242 ~~~~ll~~~l~~l 254 (283)
.+++.++|+++
T Consensus 218 --~~~~~~~~~~~ 228 (228)
T TIGR01704 218 --SLMVESLVQKL 228 (228)
T ss_pred --HHHHHHHHHhC
Confidence 46888888764
No 19
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=100.00 E-value=3.7e-32 Score=263.88 Aligned_cols=222 Identities=15% Similarity=0.209 Sum_probs=173.2
Q ss_pred ceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCCE
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCTH 84 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~~ 84 (283)
++||||+++.. |...|.+......+..++ +.++|+|+++|++|+++ .+|+|+ +|++ ++.+++.+++++.
T Consensus 2 ~~i~ii~Am~~-E~~~~~~~l~~~~~~~~~--~~~~~~G~~~g~~v~v~-~sGiG~------v~AA~~~~~li~~~~~~~ 71 (459)
T PRK06698 2 NRIGIIGAMQI-EIDLLLEKLIMQEEQIIA--GMPFYVGEFMGTEVIVT-RCGVGK------VNAAACTQTLIHKFDVDA 71 (459)
T ss_pred CeEEEEeeCHH-HHHHHHHHhhccceEEEC--CeEEEEEEECCEEEEEE-ECCCCH------HHHHHHHHHHHHhcCCCE
Confidence 57999999552 334443333222222333 45899999999999999 599995 8877 5677778999999
Q ss_pred EEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc--CCcEEee
Q psy17032 85 VIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL--GFKFHDK 162 (283)
Q Consensus 85 iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~--g~~~~~~ 162 (283)
||++|+|||++|++++||+||++..++++.+. +.+.+. .+. +..++.|++|.+.+.+.+++. +.+++ .
T Consensus 72 ii~~G~aG~l~~~l~~gDvvi~~~~~~~d~~~--~~~~~~-----~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~-~ 141 (459)
T PRK06698 72 IINTGVAGGLHPDVKVGDIVISTNVTHHDVSK--TQMKNL-----FPF--QEEFIASKELVELARKACNSSSLHMEIH-E 141 (459)
T ss_pred EEEEecccCCCCCCcCCCEEEEceeEEccCCc--cccCCc-----CCC--CCCcCCCHHHHHHHHHHHHhccCCccEE-E
Confidence 99999999999999999999999999998753 222211 111 123567999999999988764 56788 8
Q ss_pred eeEEEecCCcccCHHH-HHH-HHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHH
Q psy17032 163 GTAVCIEGPRFSSRAE-SNL-FRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENV 240 (283)
Q Consensus 163 G~~~~~~Gp~fet~aE-~~~-~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~ 240 (283)
|++ .|||+|.+..+ .+. ++++|+++||||+++++++|+.+|+||++||+|||.++. ++..+|++|++.+.++
T Consensus 142 G~i--~sgd~f~~~~~~~~~l~~~~~a~~veME~aava~va~~~~vp~~~iR~iSD~a~~---~~~~~~~~~~~~a~~~- 215 (459)
T PRK06698 142 GRI--VSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEVPFLVIRCISDSADD---EAQISYDDFAKTAANY- 215 (459)
T ss_pred eeE--EecCeecCCHHHHHHHHHHcCCcEEehhhHHHHHHHHHcCCCEEEEEEeccCCCC---CCccCHHHHHHHHHHH-
Confidence 998 58999987554 444 467999999999999999999999999999999999864 5788999998766554
Q ss_pred HHHHHHHHHHHHhcc
Q psy17032 241 EKITKLFVHIVPKIA 255 (283)
Q Consensus 241 ~~~~~ll~~~l~~l~ 255 (283)
+.+++.++|+++.
T Consensus 216 --~~~~v~~~l~~~~ 228 (459)
T PRK06698 216 --CSEIIVEMLKTIS 228 (459)
T ss_pred --HHHHHHHHHHHhc
Confidence 4568999998874
No 20
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=3.3e-31 Score=234.97 Aligned_cols=225 Identities=20% Similarity=0.264 Sum_probs=171.9
Q ss_pred ceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCCE
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCTH 84 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~~ 84 (283)
|+|+||.++.. |++.+..........+.+ +..+|.|+++|++|+++ .+|+|+ +|++ ++.+++..++++.
T Consensus 1 ~~i~ii~A~~~-E~~~l~~~~~~~~~~~~~--~~~~~~g~~~g~~v~v~-~tG~G~------~~aa~~~~~li~~~~~~~ 70 (230)
T PRK05584 1 MKIGIIGAMEE-EVTLLLDKLENAQTITLA--GREFYTGTLHGHEVVLV-LSGIGK------VAAALTATILIEHFKVDA 70 (230)
T ss_pred CeEEEEccCHH-HHHHHHHHhhccceEecC--CcEEEEEEECCEEEEEE-ECCcCH------HHHHHHHHHHHHhcCCCE
Confidence 47999999552 334332222221121222 45799999999999999 499985 7766 4567888999999
Q ss_pred EEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeee
Q psy17032 85 VIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGT 164 (283)
Q Consensus 85 iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~ 164 (283)
||++|+|||+++++++||+||++++++++.+. +.++.+.+ ..+.. +..+++|++|++.+.+.+++.+++++ .|.
T Consensus 71 ii~~G~aG~l~~~~~~GDvvi~~~~~~~d~~~--~~~~~~~~--~~~~~-~~~~~~d~~L~~~~~~~~~~~~~~~~-~G~ 144 (230)
T PRK05584 71 VINTGVAGGLAPGLKVGDVVVADELVQHDVDV--TAFGYPYG--QVPGL-PAAFKADEKLVALAEKAAKELNLNVH-RGL 144 (230)
T ss_pred EEEEEecCCCCCCCccCCEEEECeEEEeccCc--cccCCcCC--ccCCC-CcceeCCHHHHHHHHHHHHhcCCcEE-EEE
Confidence 99999999999999999999999999987642 22221111 01111 12367899999999999999999999 999
Q ss_pred EEEecCCccc-CHHHHHHHH-Hc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHH
Q psy17032 165 AVCIEGPRFS-SRAESNLFR-SW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVE 241 (283)
Q Consensus 165 ~~~~~Gp~fe-t~aE~~~~~-~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~ 241 (283)
+ .+||+|. ++.+.+.++ ++ |++++|||+++++++|+.+|+||++||.|||.+++ +...++++++..+++++
T Consensus 145 ~--~s~d~f~~~~~~~~~l~~~~~~~~~veME~aa~a~va~~~~vp~~~ir~vSd~~~~---~~~~~~~~~~~~a~~~~- 218 (230)
T PRK05584 145 I--ASGDQFIAGAEKVAAIRAEFPDALAVEMEGAAIAQVCHEFGVPFVVVRAISDTADD---EAHVSFDEFLAVAAKYS- 218 (230)
T ss_pred E--EEcchhcCCHHHHHHHHHhCCCCeEEechHHHHHHHHHHcCCCEEEEEEeccCCCC---cccccHHHHHHHHHHHH-
Confidence 7 4899997 555666665 58 99999999999999999999999999999999865 35668999887666654
Q ss_pred HHHHHHHHHHHhc
Q psy17032 242 KITKLFVHIVPKI 254 (283)
Q Consensus 242 ~~~~ll~~~l~~l 254 (283)
.+++..+|+++
T Consensus 219 --~~~~~~~~~~~ 229 (230)
T PRK05584 219 --ANILKRMLEKL 229 (230)
T ss_pred --HHHHHHHHHhc
Confidence 45888887765
No 21
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.98 E-value=1.8e-31 Score=236.02 Aligned_cols=229 Identities=21% Similarity=0.270 Sum_probs=177.6
Q ss_pred eEEEEeCCCCCCccccccc--ceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH--HHHHHHHHcCC
Q psy17032 7 KIGFIGGSGLNNPQILENA--QEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR--ANIWALKSVGC 82 (283)
Q Consensus 7 ~igIIggsgl~~~~~l~~~--~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~--a~~~~l~~~Gv 82 (283)
+|+||+|++ .+++.+... .+.++.... ...++++|+++|++|+++ ++|+|. ++.+ ++.++++++++
T Consensus 1 ~i~ii~a~~-~e~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~v~i~-~~g~G~------~~aa~~~~~~~l~~~~~ 70 (234)
T PF01048_consen 1 RIGIICAMP-EEAEALADLPLEETPYFREN--RGFTYYTGKYGGKNVVIV-STGMGP------VNAAVIATQRLLEEFGP 70 (234)
T ss_dssp EEEEEESSH-HHHHHHHHHEEEEEEEEEEC--TTEEEEEEEETTEEEEEE-EESSSH------HHHHHHHHHHHHHHCTS
T ss_pred CEEEEcCCH-HHHHHHHhhcccCCCccccC--CCcEEEEEEECCEEEEEE-ECCcCC------chHHHHHHHHHHHhCCC
Confidence 689999977 244433322 222222221 145899999999999999 599885 5544 57888899999
Q ss_pred CEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCC-CCCCCHHHHHHHHHHHHHcCCcEEe
Q psy17032 83 THVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM-EPAFDNSTRQIIIDSLKELGFKFHD 161 (283)
Q Consensus 83 ~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~-~~~~d~~L~~~~~~~a~~~g~~~~~ 161 (283)
+.||++|+|||+++++++||+||+++++++++......+... ....... .+++|+.|++.+.+.+++.+++++
T Consensus 71 ~~vi~~G~~G~~~~~~~~GDvvi~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 144 (234)
T PF01048_consen 71 DLVIMIGICGGLDPDIKLGDVVIPQDAIRYDGDSPSFFFDEE-----PPYAPVSRPAPADPDLREALKEAAKALGIPVH- 144 (234)
T ss_dssp SEEEEEEEEEESSTTS-TTEEEEEEEEEEESSHHGHHSSETT-----SGTSTSCSTEESHHHHHHHHHHHHHHTTSTEE-
T ss_pred eEEEEeccccccccccccceEEecccEEeccCcccccccccc-----ccccccccccccCHHHHHHHHHhhhccccccc-
Confidence 999999999999999999999999999998876442222111 0112222 345999999999999999999999
Q ss_pred eeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHH
Q psy17032 162 KGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVE 241 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~ 241 (283)
.|.+++.+++.+++.++.+.++++|++++|||+++++.+|+++|+||++|+.|||.++... +.+.+++++.+.....+.
T Consensus 145 ~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~~~a~~~~ip~~~i~~isD~~~~~~-~~~~~~~~~~~~~~~a~~ 223 (234)
T PF01048_consen 145 EGPIASGDSFYRETEAEIELLQKFGADAVDMESAAVAQAARERGIPFIAIRGISDYADGGD-DDEWTFEEFKEFLQLAAE 223 (234)
T ss_dssp EEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHHHHHHHTT-EEEEEEEEEEETTTTS-SSSSHHHHHHHHHHHHHH
T ss_pred cceEEEEeeeccchhhHHHHHHhcccccccchHHHHHHHHHHcCCCEEEEEEEEcCCccCC-CCCCCHHHHHHHHHHHHH
Confidence 8999988888889988888889999999999999999999999999999999999875432 455666777777777777
Q ss_pred HHHHHHHHHHH
Q psy17032 242 KITKLFVHIVP 252 (283)
Q Consensus 242 ~~~~ll~~~l~ 252 (283)
++.+++.++|+
T Consensus 224 ~~~~~~~~~l~ 234 (234)
T PF01048_consen 224 NAAAILEELLK 234 (234)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 78888888874
No 22
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=99.97 E-value=1.6e-30 Score=229.20 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=151.2
Q ss_pred CCceEEEEeCCCCCCccccccc-cee-eeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHc
Q psy17032 4 SKIKIGFIGGSGLNNPQILENA-QEV-AVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSV 80 (283)
Q Consensus 4 ~~~~igIIggsgl~~~~~l~~~-~~~-~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~ 80 (283)
+.++||||+++. .|.+.|... ... ...... +.++|.|+++|++|+++ .+|+|+ +|++ ++.+++.++
T Consensus 2 ~~~~I~ii~Am~-~E~~~l~~~~~~~~~~~~~~---~~~~y~~~~~g~~v~~~-~sGiGk------v~aa~~~~~lI~~~ 70 (218)
T PRK07164 2 NEKIIAIIYADN-NEFVNLENFEFILLKNIESF---QKKIAIFRYKNYNILYI-NTGIGL------INAALATQKLIEKY 70 (218)
T ss_pred CccEEEEEeeCH-HHHHHHHHhhhhcceeEEec---CceEEEEEECCEEEEEE-ECCCCH------HHHHHHHHHHHHHc
Confidence 456899999954 133545433 222 222333 34799999999999999 599996 8877 577888999
Q ss_pred CCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q psy17032 81 GCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH 160 (283)
Q Consensus 81 Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~ 160 (283)
+++.||++|+|||+ +++++||+||++..++||...+. + +.+ ..|..+. .++.++ + +.+++
T Consensus 71 ~~~~iI~~G~aG~l-~~~~~gdvvi~~~~~~~D~~~~~--~--~~g--~~p~~~~-~~~~~~-~-----------~~~~~ 130 (218)
T PRK07164 71 QIEIIINYGAVGSN-INIDLGQVVYPEKFYLLDAITPW--Y--PPG--QTPGEKE-FYENNK-I-----------NKNFN 130 (218)
T ss_pred CCCEEEEEEcccCc-CCCCCCCEEEEeeeEEcccCCcC--C--Ccc--cCCCCcc-cccchh-h-----------hcCCc
Confidence 99999999999999 99999999999999998874221 1 111 1111111 122221 1 12344
Q ss_pred eeeeEEEecCCcccCHHH-HHHHHHc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHH
Q psy17032 161 DKGTAVCIEGPRFSSRAE-SNLFRSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKE 238 (283)
Q Consensus 161 ~~G~~~~~~Gp~fet~aE-~~~~~~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~ 238 (283)
.|.+ .+||+|....+ .+.++++ ++++||||++++|++|+.+++||++||+|||.+. +..+++++.+...+
T Consensus 131 -~~~i--~SgD~Fi~~~~~~~~l~~~~~a~~vDME~aAiaqv~~~~~vpf~~ir~ISD~~~-----~~~~~~~~~~~~~~ 202 (218)
T PRK07164 131 -KIHL--GSSNSFIFDLDKLKIIKDFIFVSFFDMEAFALAQVCFKNKVKFYCIKYVSDFIE-----NNSDIEIVNNNIKK 202 (218)
T ss_pred -EEEE--EeCCccCCCHHHHHHHHhcCCCcEEEchHHHHHHHHHHcCCCEEEEEEEccCCC-----CCCCHHHHHHHHHH
Confidence 5655 59999986544 4556777 9999999999999999999999999999999983 23455545454555
Q ss_pred HHHHHHHHHHHHHHhc
Q psy17032 239 NVEKITKLFVHIVPKI 254 (283)
Q Consensus 239 ~~~~~~~ll~~~l~~l 254 (283)
.+..+.+++.++|+++
T Consensus 203 a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 203 GSKKALEFIFELLENI 218 (218)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5556668888888764
No 23
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=99.97 E-value=2.3e-29 Score=226.04 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=159.7
Q ss_pred ceEEEEeCCCCCCccccccccee--eeeCCCC-CCcccEEEEEECCeEEEEEeccCCCcccC---CCccchH-HHHHHHH
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEV--AVDTPYG-APSDVLLQGTIQGVDCVILARHGRKHTIN---PSNVNYR-ANIWALK 78 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~--~~~~~~G-~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~---~~~V~~~-a~~~~l~ 78 (283)
++||||+++.. |...|...... ..+.+|. ..+..+|+|+++|++|+++ .+|++..+- ..++|++ ++.+++.
T Consensus 9 ~~I~Ii~Am~~-E~~~l~~~l~~~~~~~~~~~~~~~~~~~~G~~~g~~V~v~-~sG~~~~~~i~~IGkvnAA~~~~~li~ 86 (249)
T PLN02584 9 STVLIVIAMQA-EAMPLVNALGLVEDVDSPFPKGVPWVRYSGTHKGLRVHVV-CPGKDKALGVDSVGTVPASLVTYAAIQ 86 (249)
T ss_pred ceEEEEEEcHH-HHHHHHHHHhhhccccccccccCCeeEEEEEECCEEEEEE-ecCCccccccCccCHHHHHHHHHHHHH
Confidence 48999999542 33333322222 1223331 0145799999999999999 599332221 1248877 5788889
Q ss_pred HcCCCEEEEecccccCCC-CCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCC
Q psy17032 79 SVGCTHVIVSTATGSLQE-EIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF 157 (283)
Q Consensus 79 ~~Gv~~iI~tg~aG~l~~-~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~ 157 (283)
+++++.||++|+|||+++ ++++||+||++..+++|.+.+.+.++. .++...+ ...++.+.. ++
T Consensus 87 ~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~~~~~~~~~~-----~~~g~~~--~~~~~~l~~-------~~-- 150 (249)
T PLN02584 87 ALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDRRIPIPVFDK-----YGVGTRD--AFPTPNLIK-------AL-- 150 (249)
T ss_pred hcCCCEEEEEecccCcCcCCCCcCCEEEECeeEecccCCCcccccc-----cccCccc--cCCCHHHHh-------hC--
Confidence 999999999999999996 899999999999999987543222211 1111111 111344432 23
Q ss_pred cEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHH
Q psy17032 158 KFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTF 236 (283)
Q Consensus 158 ~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~ 236 (283)
.++ .|.+ ++||+|.+..+ .+.++++++++|+||+++++++|+.+|+||++||+|||.+++ + ..+++||.+.+
T Consensus 151 ~~~-~G~i--~SgD~F~~~~~~~~~~~~~~a~~vDME~aAia~va~~~gvp~~~IR~ISD~~~~---~-~~~~~ef~~~~ 223 (249)
T PLN02584 151 GLK-EGVL--STGNSLDMTEQDEESIKANDATVKDMEGAAVAYVADLLKVPAIFVKAVTDIVDG---D-KPTAEEFLENL 223 (249)
T ss_pred CCe-EEEE--EEeCEEeCCHHHHHHHHHcCCcEEechHHHHHHHHHHhCCCEEEEEEEeecCCC---C-CCCHHHHHHHH
Confidence 457 7887 69999965444 456788999999999999999999999999999999998753 2 23789999888
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy17032 237 KENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 237 ~~~~~~~~~ll~~~l~~l~~ 256 (283)
..++..+.+.+..++.-+..
T Consensus 224 ~~a~~~~~~~l~~~~~~~~~ 243 (249)
T PLN02584 224 SAAAAALQGAVPKVLDFISG 243 (249)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88888777877777776544
No 24
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=225.62 Aligned_cols=228 Identities=17% Similarity=0.205 Sum_probs=178.7
Q ss_pred CCceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCC
Q psy17032 4 SKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGC 82 (283)
Q Consensus 4 ~~~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv 82 (283)
+.++++||+++.. +.+.+.+......+.+.. ...+++|++.|++|+++ .+|+|+ |+.+ ++..++..+++
T Consensus 1 ~~~~i~Ii~a~~~-e~~~l~~~~~~~~~~~~~--~~~~~~g~~~~~~vvl~-~sgIG~------v~aA~~t~~~i~~~~p 70 (234)
T COG0775 1 TNMKIGIIGAMEE-EVELLLELLGDAEEIAIA--GTKFYTGQMAGKEVVLV-LSGIGK------VNAALTTTLLLAKFSP 70 (234)
T ss_pred CCeEeehHHhhHH-HHHHHHhhccCceEEEec--ceEEEEEEEcCeEEEEE-EeCcCH------HHHHHHHHHHHHhcCC
Confidence 3578999999552 334444332233333322 35899999999999998 599995 7766 56678899999
Q ss_pred CEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCc-ccCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q psy17032 83 THVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGV-LHIPMEPAFDNSTRQIIIDSLKELGFKFHD 161 (283)
Q Consensus 83 ~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~-~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ 161 (283)
+.||++|+|||+++++++||+|++++.+++|.+ .+.|....+. .+ ..+ ..+..|++++....+.+.+.+.+++
T Consensus 71 ~~iI~~G~aGgl~~~~~iGDvvvs~~~~~~D~d--~~~~~~~~g~--~p~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~- 144 (234)
T COG0775 71 DAVINTGSAGGLVSSLAIGDVVVSDALSYHDVD--LTAFGYEIGQ--IPTGEP-ALFEADEELLDLAGEVAGEGKLRLR- 144 (234)
T ss_pred CEEEEeeeccCcCCCCccccEEEEhhHhhhhcc--cccccccCCC--CCCccc-hhccccHHHHHHHHHHHHhcCccee-
Confidence 999999999999999999999999999999986 3444422221 12 122 4567899999999999998889999
Q ss_pred eeeEEEecCCcccCHHHH-HHH-HHc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHH
Q psy17032 162 KGTAVCIEGPRFSSRAES-NLF-RSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKE 238 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE~-~~~-~~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~ 238 (283)
+|++ .+||+|.+..+. +.+ +.+ ++.+||||+++++++|+.+++||+.||+|||.+++. ..+.++++|++.+.+
T Consensus 145 ~Gli--~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia~v~~~~~vP~~~ir~ISD~a~~~--~~~~~~~~f~~~aa~ 220 (234)
T COG0775 145 TGLI--VTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIAQVCYRFGVPFLVLRAISDIADGG--ADPVSFDEFLAEAAK 220 (234)
T ss_pred EEEE--EcchhhhhcchhHHHHHHHCCCcEEEEecHHHHHHHHHHhCCCEEEEEEeccCCCCc--CCcccHHHHHHHHHH
Confidence 9998 699999877664 444 456 999999999999999999999999999999998663 345899999998766
Q ss_pred HHHHHHHHHHHHHHhc
Q psy17032 239 NVEKITKLFVHIVPKI 254 (283)
Q Consensus 239 ~~~~~~~ll~~~l~~l 254 (283)
.+ ..++++++++|
T Consensus 221 ~s---~~~~~~~~~~l 233 (234)
T COG0775 221 QS---ALVLLSALEKL 233 (234)
T ss_pred HH---HHHHHHHHHhc
Confidence 54 46888888876
No 25
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.95 E-value=1.3e-26 Score=206.57 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=132.3
Q ss_pred cccEEEEEECCeEEEEEeccCCCcccCCCccchHH-HHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCC
Q psy17032 38 SDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRA-NIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTR 116 (283)
Q Consensus 38 ~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a-~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~ 116 (283)
+..+|+|+|+|++|+++. +|+|+ ++++. ..+++..+|++.||++|+||||++++++||+||++..+ ++..
T Consensus 45 ~~~~~~G~~~g~~v~v~~-~GiG~------~~Aai~~~eLi~~~g~~~iI~~GtaG~l~~~l~~GDvVI~~~a~-~d~~- 115 (233)
T PRK13374 45 NMFGFTGTYKGKKVSVMG-HGMGI------PSMVIYVHELIATFGVKNIIRVGSCGATQDDVKLMDVIIAQGAS-TDSK- 115 (233)
T ss_pred ceEEEEEEECCEEEEEEe-CCCCH------hHHHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCEEEEeeeE-ecCc-
Confidence 347999999999999995 99996 77663 45666789999999999999999999999999999886 3322
Q ss_pred cccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH--HHHHHHcCCcEEecCc
Q psy17032 117 IQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE--SNLFRSWNAHLVNMTL 194 (283)
Q Consensus 117 ~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE--~~~~~~~Gad~V~Me~ 194 (283)
.+.+... + ..+.+..|++|.+.+.+.+++.+++++ .|.+ ++||+|.+..+ .+.++++|+++||||+
T Consensus 116 -~~~~~~~-----~---~~~~~~~d~~l~~~~~~~~~~~~~~~~-~G~i--~T~D~F~~~~~~~~~~~~~~g~~~vEME~ 183 (233)
T PRK13374 116 -TNRIRFS-----G---HDFAAIADYQLLEKAVETAREKGVPVK-VGNV--FSSDLFYDPDEDAIEAMERFGILGVDMEV 183 (233)
T ss_pred -hhhhccC-----C---CCcCCCCCHHHHHHHHHHHHHcCCCeE-EEEE--EEcCcccCCChHHHHHHHHcCCeEEehhH
Confidence 1111000 0 122356799999999999999999999 8997 59999975433 3456789999999999
Q ss_pred hHHHHHHHHcCCcEEEEEEeeecCCC
Q psy17032 195 VPEVVLAKEAGLLYAAVAMATDYDCW 220 (283)
Q Consensus 195 aaea~vA~~~gv~~~~i~~vsd~a~~ 220 (283)
++++++|+.+|+|+++|++|||.+..
T Consensus 184 aAl~~va~~~gip~~~i~~isD~~~~ 209 (233)
T PRK13374 184 AGLYGLAAYLGAEALAILTVSDHIIT 209 (233)
T ss_pred HHHHHHHHHcCCCEEEEEEEEeeecc
Confidence 99999999999999999999999854
No 26
>PRK11178 uridine phosphorylase; Provisional
Probab=99.95 E-value=1.6e-26 Score=208.01 Aligned_cols=188 Identities=13% Similarity=0.164 Sum_probs=144.6
Q ss_pred ceEEEEeCCCCCCcccccccceeee-eCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCE
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAV-DTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTH 84 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~-~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~ 84 (283)
++|+||+|+. .+.+.+....+... ....+ ..++|+|+|+|++|++++ +|+|+ +|++.+++.|..+|++.
T Consensus 17 ~~i~Ii~g~p-~e~~~ia~~l~~~~~~~~~~--~~~~~~G~~~g~~v~v~~-~GiG~------~~Aa~~~~eLi~~g~~~ 86 (251)
T PRK11178 17 ATLAIVPGDP-ERVEKIAALMDNPVFLASHR--EFTSWRAELDGKPVIVCS-TGIGG------PSTSIAVEELAQLGVRT 86 (251)
T ss_pred CCEEEECCCH-HHHHHHHHHhccchheeecc--CeEEEEEEEcCEEEEEEe-cCCCH------HHHHHHHHHHHHcCCCE
Confidence 5799999954 23344433332222 11122 447999999999999994 99996 77775566677789999
Q ss_pred EEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeee
Q psy17032 85 VIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGT 164 (283)
Q Consensus 85 iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~ 164 (283)
||++|+||||+|++++||+||++..+++++.+. .|. + + .+| ...|+++...+.+.+++++++++ .|+
T Consensus 87 iI~~GtaG~l~~~l~~GDvVI~~~a~~~Dg~s~--~y~--~----~-~~p---~~~~~~~~~~L~~~~~~~~~~~~-~G~ 153 (251)
T PRK11178 87 FLRIGTTGAIQPHINVGDVLVTTASVRLDGASL--HFA--P----L-EFP---AVADFECTTALVEAAKSIGATTH-VGV 153 (251)
T ss_pred EEEEeccccCCCCCCCCCEEEecceecCCCCcc--ccC--C----C-CcC---CCCCHHHHHHHHHHHHHcCCCEE-EEE
Confidence 999999999999999999999999999997542 221 0 1 122 23588888999999999999999 999
Q ss_pred EEEecCCcccCH----------------HHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecC
Q psy17032 165 AVCIEGPRFSSR----------------AESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 218 (283)
Q Consensus 165 ~~~~~Gp~fet~----------------aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a 218 (283)
+ ++||+|.+. ...+.|++.|+++||||+++++++|+.+|+++++|+.+..+.
T Consensus 154 i--~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEMEsAAla~va~~~gv~a~~v~~~~~~r 221 (251)
T PRK11178 154 T--ASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNR 221 (251)
T ss_pred E--eecCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEEEecc
Confidence 8 599999642 223456677999999999999999999999999998877664
No 27
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.95 E-value=5.9e-26 Score=202.12 Aligned_cols=187 Identities=15% Similarity=0.198 Sum_probs=146.9
Q ss_pred cEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcc
Q psy17032 40 VLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQ 118 (283)
Q Consensus 40 ~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~ 118 (283)
.+|+|+++|++|++++ +|+|. ++++ +..+++..+|++.||++|+||||+|++++||+||++..++.++.+..
T Consensus 43 ~~~~G~~~g~~v~v~~-~G~G~------~~aai~~~eli~~~~~~~iI~~Gt~G~l~~~~~~GdvvI~~~a~~~~~~~~~ 115 (232)
T TIGR00107 43 LGFTGTYKGKKISVMG-HGMGI------PSISIYVYELIKFYEVKTIIRIGSCGAIRPDVKLRDVIIAMGASTDSKYNRV 115 (232)
T ss_pred EEEEEEECCEEEEEEe-CCCCH------hHHHHHHHHHHHHcCCCEEEEEeccccCCCCCCCCCEEEECceeccCCcchh
Confidence 6899999999999995 99995 5655 44566677999999999999999999999999999999887653211
Q ss_pred cccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccC-HHH-HHHHHHcCCcEEecCchH
Q psy17032 119 TFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS-RAE-SNLFRSWNAHLVNMTLVP 196 (283)
Q Consensus 119 t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet-~aE-~~~~~~~Gad~V~Me~aa 196 (283)
.| .+ .+.....|++|.+.+.+.++++++++| .|++ .+||.|.. ..+ .+.++++|++++|||+++
T Consensus 116 -~~--------~~--~~~~~~ad~~l~~~l~~~~~~~~~~~~-~G~~--~S~D~f~~~~~~~~~~~~~~g~~~vEME~aa 181 (232)
T TIGR00107 116 -RF--------VE--VDFAAIADFELVELAYQTAKALGLDFH-VGNV--FSADAFYQPDKDVFDLMAKYGILAVEMEAAA 181 (232)
T ss_pred -hc--------CC--CCcCccCCHHHHHHHHHHHHHCCCCeE-EEEE--eEcCcccCCCHHHHHHHHHcCCeEEehhHHH
Confidence 11 11 122356799999999999999999999 9997 58999864 333 456788999999999999
Q ss_pred HHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 197 EVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 197 ea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
++++|+.+|+|+++|++|||..... +..+.+++.+ ..+++.++.++.+.+|
T Consensus 182 l~~va~~~~~~~~~i~~vsd~~~~~---~~~~~~~~~~----~~~~~~~~al~~~~~~ 232 (232)
T TIGR00107 182 LYANAAELGAKALTILTVSDHLVTH---EALTAEERQT----TFKDMIILALEMVSQL 232 (232)
T ss_pred HHHHHHHcCCcEEEEEEEEeecccC---CCCChHHHHH----HHHHHHHHHHHHHhcC
Confidence 9999999999999999999987542 3344455433 3345556777766654
No 28
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.95 E-value=5e-26 Score=204.14 Aligned_cols=218 Identities=15% Similarity=0.180 Sum_probs=154.6
Q ss_pred ceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEE
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHV 85 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~i 85 (283)
.++.|+.|.. .+.+.+....+........ ....+|+|+++|++|+++ .+|+|+ ++++..++.|..+|++.|
T Consensus 12 ~~~vi~~Gdp-~r~~~ia~~l~~~~~~~~~-r~~~~~~G~~~g~~v~v~-~~GiG~------~~aai~~~eLi~~g~~~i 82 (245)
T TIGR01718 12 QTYVILPGDP-DRVEKIAAHMDKPVKVASN-REFVTYRGELDGKPVIVC-STGIGG------PSTAIAVEELAQLGARTF 82 (245)
T ss_pred CCeEEecCCH-HHHHHHHHhcCCcEEEecc-CCEEEEEEEECCEEEEEE-cCCCCH------HHHHHHHHHHHHhCCCEE
Confidence 4677888844 2234443332222211111 134679999999999999 499995 676655555556999999
Q ss_pred EEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeE
Q psy17032 86 IVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTA 165 (283)
Q Consensus 86 I~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~ 165 (283)
|++|+||||+|++++||+||++..+++++... .+.+ ..+| ...|+++.+.+.+.+++++++++ .|++
T Consensus 83 Ir~GtaG~l~~~~~~GDiVI~~~a~~~Dg~~~----~y~~-----~~~p---~~~d~~l~~~l~~~~~~~~~~~~-~G~v 149 (245)
T TIGR01718 83 IRVGTTGAIQPHINVGDVLITTAAVRLDGASL----HYAP-----LEFP---AVADFEVTTALVEAAESIGVRHH-VGVV 149 (245)
T ss_pred EEeeccccCCCCCCCCCEEEeCceecCCCccc----ccCC-----CCcC---CCCCHHHHHHHHHHHHHcCCCeE-EEEE
Confidence 99999999999999999999999999987421 1111 1122 23489999999999999999999 9998
Q ss_pred EEecCCcccCHH-----------H----HHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHH
Q psy17032 166 VCIEGPRFSSRA-----------E----SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVA 230 (283)
Q Consensus 166 ~~~~Gp~fet~a-----------E----~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~ 230 (283)
.++|+|.+.. + .+.|+++|+++||||+++++++|+.+|+|+++++++++.... ....+-+
T Consensus 150 --~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vEME~aal~~va~~~gi~~~~v~~~~~~~~~---~~~~~~~ 224 (245)
T TIGR01718 150 --ASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYEMESATLFTLCSSQGLRAGMVAGVIVNRTQ---QEIPNEE 224 (245)
T ss_pred --EECCcCcCCCCccccccccchhHHHHHHHHHHcCceEehhhHHHHHHHHHHcCCcEEEEEEEEecccc---cccCchH
Confidence 5899997532 1 234566799999999999999999999999999998876432 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 231 DVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 231 e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
+ ..+...++.++.++.+.++
T Consensus 225 ~----~~~~~~~~i~~al~a~~~~ 244 (245)
T TIGR01718 225 T----MKQTEEHAIKVAVEAVKRL 244 (245)
T ss_pred H----HHHhHHHHHHHHHHHHHhh
Confidence 2 2234445666777766543
No 29
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.94 E-value=1.9e-26 Score=202.67 Aligned_cols=168 Identities=21% Similarity=0.297 Sum_probs=134.2
Q ss_pred CeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCC
Q psy17032 48 GVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENS 127 (283)
Q Consensus 48 G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~ 127 (283)
+++|+++ .+|+|+ +|++++++.|..+|++.||++|+|||++|++++||+||++..+++ +
T Consensus 19 ~~~v~~~-~sGiG~------~~aa~~~~~l~~~~~~~vI~~G~aG~l~~~l~~Gdvvi~~~~~~~-g------------- 77 (212)
T TIGR03468 19 GPGLLVC-LSGGGP------ERARAAAARLMAAGAAGLVSFGTAGALDPALQPGDLVVPEEVRAD-G------------- 77 (212)
T ss_pred CCCEEEE-EcCCCH------HHHHHHHHHHHHcCCCEEEEEEecccCCCCCCCCCEEeehhheeC-C-------------
Confidence 5678888 499995 888877888899999999999999999999999999999875432 1
Q ss_pred CCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcc-cCHHHHHHH-HHcCCcEEecCchHHHHHHHHcC
Q psy17032 128 PNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF-SSRAESNLF-RSWNAHLVNMTLVPEVVLAKEAG 205 (283)
Q Consensus 128 ~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~f-et~aE~~~~-~~~Gad~V~Me~aaea~vA~~~g 205 (283)
. .+++|++|.+.+.+.+. .+++++ .|+++ ++|.| .|++|++++ +.+|+++||||+++++++|+++|
T Consensus 78 ---~-----~~~~d~~l~~~l~~~l~-~~~~~~-~G~~~--t~d~~~~~~~~~~~l~~~~ga~aVdMEsaava~va~~~g 145 (212)
T TIGR03468 78 ---D-----RFPTDPAWRRRLLEALP-AGLRVH-RGVLA--ASDTVVSTAAAKAALARATGAAAVDMESGAVAAVAAAAG 145 (212)
T ss_pred ---C-----eecCCHHHHHHHHHHHH-hCCCeE-EEEEE--EeCeEecCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcC
Confidence 1 14689999999888777 478899 99986 44555 577787766 67999999999999999999999
Q ss_pred CcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17032 206 LLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 253 (283)
Q Consensus 206 v~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~ 253 (283)
+||++||+|||.+++ +.+.++.+++. .+...++.+++..++++
T Consensus 146 ip~~~ir~ISD~a~~---~~~~~~~~~~~--~~g~~~~~~ll~~l~~~ 188 (212)
T TIGR03468 146 LPFAVIRVISDPADR---ALPRAALDALR--PDGSTALAALLRGLLRR 188 (212)
T ss_pred CCEEEEEEEeecCCC---cCchhHHHhcC--cccCccHHHHHHHHHhC
Confidence 999999999999854 34555655553 23344566788777764
No 30
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=199.24 Aligned_cols=190 Identities=17% Similarity=0.173 Sum_probs=143.1
Q ss_pred ceEEEEeCCCCCCccccccc-cee--eeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcC
Q psy17032 6 IKIGFIGGSGLNNPQILENA-QEV--AVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVG 81 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~-~~~--~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~G 81 (283)
.+..|+.|... ..+.+... .+. .+...- +..+|+|+++|++|+++ .+|+|. ++++ +..+++..+|
T Consensus 13 ~~~vi~~Gdp~-r~~~ia~~~l~~~~~~~~~r---~~~~~~G~~~g~~v~v~-~tGiG~------~~aai~~~eLi~~~~ 81 (235)
T PRK05819 13 ADTVLMPGDPL-RAKYIAETFLEDVVCVNEVR---GMLGFTGTYKGKRVSVM-GTGMGI------PSISIYANELITDYG 81 (235)
T ss_pred CCeEEecCCHH-HHHHHHHHHhcCcEeeeeec---cEEEEEEEECCEEEEEE-ecCCCh------hHHHHHHHHHHHhcC
Confidence 46778878541 22333321 111 122222 33689999999999999 499995 7766 4556777899
Q ss_pred CCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q psy17032 82 CTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHD 161 (283)
Q Consensus 82 v~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ 161 (283)
++.||++|+|||++|++++||+||++..++..+.+.. .| .+. .+.+..|++|.+.+.+.+++.+++++
T Consensus 82 ~~~iI~~GtaG~l~~~l~iGDvVI~~~a~~~~~~~~~-~~--------~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~- 149 (235)
T PRK05819 82 VKKLIRVGSCGALQEDVKVRDVVIAMGASTDSNVNRI-RF--------KGH--DFAPIADFDLLRKAYDAAKEKGITVH- 149 (235)
T ss_pred CcEEEEEecccCCCCCCCCCCEEEEceeEecCCcccc-cc--------CCC--CcCccCCHHHHHHHHHHHHHCCCcEE-
Confidence 9999999999999999999999999998764332110 11 110 11245699999999999999999999
Q ss_pred eeeEEEecCCcccCHHH--HHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCC
Q psy17032 162 KGTAVCIEGPRFSSRAE--SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW 220 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE--~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~ 220 (283)
.|.+ .++|.|....+ .+.++++|+.++|||+++.+++|+.+|+|+++|++|||....
T Consensus 150 ~G~v--~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva~va~~~~ip~~~i~~isd~~~~ 208 (235)
T PRK05819 150 VGNV--FSADLFYNPDPEMFDVLEKYGVLGVEMEAAALYGLAAKYGVKALTILTVSDHIVT 208 (235)
T ss_pred EEEE--EecCcccCCCHHHHHHHHHcCCeEEeccHHHHHHHHHHhCCCEEEEEEEeeeccc
Confidence 8987 58999954333 346788999999999999999999999999999999998754
No 31
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.94 E-value=2.4e-26 Score=203.37 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=132.8
Q ss_pred EEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCC--cc
Q psy17032 42 LQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTR--IQ 118 (283)
Q Consensus 42 ~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~--~~ 118 (283)
++|+++|++|+++ .+|+|+ ++++ ++.+++..++++.||++|+|||+++++++||+|+++..++++.+. +.
T Consensus 22 ~~G~~~g~~v~v~-~tGiG~------v~aA~~~~~~i~~~~~~~ii~~G~aG~l~~~~~~GDvvv~~~~~~~d~g~~~~~ 94 (222)
T TIGR03664 22 YAGSVGGAGFDVL-VTGVGP------VNAAAATARLLARAPYELVINAGIAGGFPGSAAVGDLVVADSEIAADLGAETPE 94 (222)
T ss_pred cceeeCCeeEEEE-ECCcCH------HHHHHHHHHHHHhCCCCEEEEEEEcccCCCCCCCcCEEEeeeEEEcccCccCCC
Confidence 7899999999998 599995 7766 566688999999999999999999999999999999999887542 11
Q ss_pred cccCCCCCCCCCcccCC---------CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHH-HHHcCC
Q psy17032 119 TFFDGSENSPNGVLHIP---------MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNL-FRSWNA 187 (283)
Q Consensus 119 t~~~~~~~~~~g~~~~~---------~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~-~~~~Ga 187 (283)
.+.... ...++. ..++.|++|.+.+.+.++..+++++ .|.+ ++|++|.+.++ .+. ++++|+
T Consensus 95 ~~~p~~-----~~~~~~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~-~G~i--~T~d~~~~~~~~~~~l~~~~~a 166 (222)
T TIGR03664 95 GFLPLE-----ALGFPQLPGGGSSYFNRIPLDPDLVERAVQLLRALGLPVA-RGPF--LTVSTVSGTAARAEALARRFGA 166 (222)
T ss_pred Cccccc-----cCCCCcCCCCCccccccccCCHHHHHHHHHHhhccCccee-Eeee--eeecceeCCHHHHHHHHHhcch
Confidence 111000 001111 0256699999999999999999999 9997 58999975555 344 477999
Q ss_pred cEEecCchHHHHHHHHcCCcEEEEEEeeecCCC
Q psy17032 188 HLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW 220 (283)
Q Consensus 188 d~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~ 220 (283)
++||||+++++++|+.+|+||++||+|||.++.
T Consensus 167 ~aveMEsaava~va~~~~vP~~~IR~ISD~~~~ 199 (222)
T TIGR03664 167 VAENMEGFAVALAALRYGVPFLELRGISNLVGP 199 (222)
T ss_pred HHHHhhHHHHHHHHHHhCCCEEEEEeeccCCCC
Confidence 999999999999999999999999999999854
No 32
>PRK07115 AMP nucleosidase; Provisional
Probab=99.94 E-value=3.5e-25 Score=199.60 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=141.3
Q ss_pred CeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCC
Q psy17032 48 GVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENS 127 (283)
Q Consensus 48 G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~ 127 (283)
|.+|.+++ +|+|+ ++++..+++|..+|++.||++|+||||++++++||+||++..+++++... .+.
T Consensus 59 g~~vsv~~-~GIG~------psAai~~eeL~~~g~~~iIr~GtaGaL~~~l~~GDiVI~t~avr~dgts~----~Y~--- 124 (258)
T PRK07115 59 AEGITIIN-FGMGS------PNAATIMDLLSALNPKAVLFLGKCGGLKSKYQVGDYFLPIAAIRGEGTSD----DYF--- 124 (258)
T ss_pred CCEEEEEe-CCCCH------HHHHHHHHHHHHcCCCEEEEEecccCcCCCCCCCCEEEEEEEEEcCCccc----ccc---
Confidence 99999995 99995 77776788889999999999999999999999999999999999886422 111
Q ss_pred CCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCc-c-cCHHHH-HHHHHcCCcEEecCchHHHHHHHHc
Q psy17032 128 PNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPR-F-SSRAES-NLFRSWNAHLVNMTLVPEVVLAKEA 204 (283)
Q Consensus 128 ~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~-f-et~aE~-~~~~~~Gad~V~Me~aaea~vA~~~ 204 (283)
.+.+ ....|++|.+.+.++++++++++| .|+++ ++|+ | ++..+. +.|+++|+++||||+++++++|+.+
T Consensus 125 --p~~~---pa~~d~~l~~~l~~~~~~~~~~~~-~G~v~--StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~~ 196 (258)
T PRK07115 125 --PPEV---PALPNFVLQKAVSSIIRDKGLDYW-TGTVY--TTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFAN 196 (258)
T ss_pred --CCcc---CcCCCHHHHHHHHHHHHHcCCCeE-EEEEE--ecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHHc
Confidence 0112 234678899999999999999999 99984 7786 4 455554 4577899999999999999999999
Q ss_pred CCcEEEEEEeeecCCCcCCCCc---cCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17032 205 GLLYAAVAMATDYDCWRDTGNK---VCVADVLKTFKENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 205 gv~~~~i~~vsd~a~~~~~~~~---~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~ 256 (283)
|+|+++|++|||..... +.. .+.++++ .+...+..++.++.+.+|.+
T Consensus 197 gv~~~~i~~isD~~~~~--~~~~~~~~~~~~~---~~~~~~~i~~~l~a~~~l~~ 246 (258)
T PRK07115 197 NIPTGALLLISDLPLRP--EGVKTKESDNKVT---KTYTEEHIEIGIEALKSLRK 246 (258)
T ss_pred CCcEEEEEEEecccCCC--cccCCccchhHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997332 121 1223333 33444556677777776644
No 33
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.94 E-value=1.6e-25 Score=195.33 Aligned_cols=172 Identities=13% Similarity=0.022 Sum_probs=132.3
Q ss_pred EEEEEeccCCCcccCCCccchH-HHHHHHHHc-----CCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCC
Q psy17032 50 DCVILARHGRKHTINPSNVNYR-ANIWALKSV-----GCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDG 123 (283)
Q Consensus 50 ~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~-----Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~ 123 (283)
.+.++ .+|+|| ||++ ++.+++.+| +++.|||+|+|||+ ++++||+|+++++++||.+ .+.|+.
T Consensus 30 ~~~l~-~sGIGK------VNAA~~~~~lI~~f~~~~~~pd~VIN~GvAG~~--~~~igDIVi~t~~~~hDvd--~t~~gy 98 (212)
T TIGR01705 30 LFAPL-MTGVGP------VEAAIRVGAELAGLDAADALPDLVVSLGSAGSR--TLEQTEIYQAVSVSYRDID--ASAFGF 98 (212)
T ss_pred CeeEE-EcCccH------HHHHHHHHHHHHhhhhccCCCCEEEEecccCCC--CCccCCEEEEeeEEEcCcC--ccccCC
Confidence 34455 489996 9988 678888875 99999999999994 6889999999999999874 555654
Q ss_pred CCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHH
Q psy17032 124 SENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKE 203 (283)
Q Consensus 124 ~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~ 203 (283)
+.+. .| .+..+.++.|.+.+.+.+.. ..++ .|.+ ++|++| +++++++|+||+++++++|+.
T Consensus 99 ~~Gq--iP---~~~~~~~~~l~~~~~~~~~~--~~~~-~g~~--vSgd~f---------~~~~a~~vdME~aAia~vc~~ 159 (212)
T TIGR01705 99 EKGA--TP---FLDLPAEAALPFRIPDIAEA--RLST-GGAI--ISGAAY---------DAIAADMVDMETFACLRACQL 159 (212)
T ss_pred cccc--CC---CCCCCchhhHHHHHHHHHhc--cCcc-eeEE--EECcch---------hhCCceEEechHHHHHHHHHH
Confidence 4321 12 22246788888887776554 2245 7887 689988 356999999999999999999
Q ss_pred cCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17032 204 AGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 204 ~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~ 256 (283)
+|+||++||.|||.+++. ....+|++|++.+.+++ .+++.++++++.+
T Consensus 160 ~~vpf~~iR~ISD~a~~~--~~~~df~~f~~~aa~~s---a~~v~~ll~~~~~ 207 (212)
T TIGR01705 160 FDVPLIGLRGISDGAADL--NHVDDWTAYLDIIDEKL---ADAVDRLCQAIED 207 (212)
T ss_pred cCCCEEEEEEEecCCCCc--cchhhHHHHHHHHHHHH---HHHHHHHHHHHhc
Confidence 999999999999987542 23346999988776654 4688888887643
No 34
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.92 E-value=3.5e-24 Score=187.10 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=120.7
Q ss_pred CeEEEEEeccCCCcccCCCccchH-HHHHHHHHcC-----CCEEEEecccccCCCCCCCCcEEEecccccccCCCccccc
Q psy17032 48 GVDCVILARHGRKHTINPSNVNYR-ANIWALKSVG-----CTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFF 121 (283)
Q Consensus 48 G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~G-----v~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~ 121 (283)
+.+|+++ .+|+|| ||++ ++.+++.+++ ++.|||+|+||| +++++||+||+++.++||.+ .+.+
T Consensus 28 ~~~v~l~-~sGIGK------VnAA~~t~~lI~~f~~~~~~pd~IIn~GvAGg--~~l~igDvViat~~~~hD~d--~~~~ 96 (212)
T PRK06026 28 RARFTPL-MTGVGP------VEAAVNLTAALARLKAAGDLPDLVVSLGSAGS--AKLEQTEVYQVSSVSYRDMD--ASPL 96 (212)
T ss_pred cCCeEEE-EcCeeH------HHHHHHHHHHHHHhhccCCCCCEEEEecccCC--CCCccCCEEEEeeEEEcCCC--Cccc
Confidence 4567777 599996 9988 6788999999 999999999999 67999999999999999874 4445
Q ss_pred CCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHH
Q psy17032 122 DGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLA 201 (283)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA 201 (283)
+.+.+ ..|.. . .+.+.+...+..... .|.+ .+|++|.|.. .++++++++|+||++++|++|
T Consensus 97 g~~~g--~~p~~---~---~~~~~~l~~~~~~~~------~~~i--~tgg~~vsgd---~f~~~~a~~vdMEgaAvAqVc 157 (212)
T PRK06026 97 GFEKG--VTPFL---D---LPATVELPLRIPGIP------EASL--STGGNIVSGA---AYDAIDADMVDMETYAVLRAC 157 (212)
T ss_pred CCccc--ccCCC---C---CchhHHHHHHHhhhh------cccc--eecCEEeeCc---hhhhcCCeEEechHHHHHHHH
Confidence 43321 11111 1 133444333332211 1221 2344444432 235689999999999999999
Q ss_pred HHcCCcEEEEEEeeecCCCcCCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 202 KEAGLLYAAVAMATDYDCWRDTGNK-VCVADVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 202 ~~~gv~~~~i~~vsd~a~~~~~~~~-~~~~e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
+.+++||++||+|||.+++ ++. .+|++|+..+++++. +++.+++..+
T Consensus 158 ~~~~vPfl~iR~ISD~a~~---~a~~~df~~f~~~aa~~sa---~~v~~~~~~~ 205 (212)
T PRK06026 158 QAFGVPLIGLRGISDGAAE---LKHVGDWTEYLHVIDEKLA---GAVDRLERAL 205 (212)
T ss_pred HHcCCCEEEEEEEecCCCc---ccchhhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 9999999999999998754 334 469999888777654 5666666544
No 35
>PRK08236 hypothetical protein; Provisional
Probab=99.92 E-value=4.8e-24 Score=187.26 Aligned_cols=181 Identities=12% Similarity=0.048 Sum_probs=137.5
Q ss_pred ceEEEEeCCCCCCcccccccceeeeeCCCCCCcccEEEEEECCeEEEEEeccCCCcccCCCccchH-HHHHHHHHc--CC
Q psy17032 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYR-ANIWALKSV--GC 82 (283)
Q Consensus 6 ~~igIIggsgl~~~~~l~~~~~~~~~~~~G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~-a~~~~l~~~--Gv 82 (283)
++|+||.+++. |.+.+.. |.. .+++++++ .+|+|+ +|++ ++.+++.++ ++
T Consensus 2 ~~i~vv~A~~~-E~~~l~~----------~l~---------~~~~~~v~-~sGiGk------v~AA~~~~~li~~~~~~p 54 (212)
T PRK08236 2 KRVLVVTAVPA-ERDAVLR----------GLG---------NDSRFDVL-AAGVGP------AAAAASTARALAAAAAPY 54 (212)
T ss_pred ceEEEEEecHH-HHHHHHH----------hcc---------CCCceEEE-EcCcCH------HHHHHHHHHHHHHhccCC
Confidence 47999999763 4333311 110 12456666 499996 8877 678888999 99
Q ss_pred CEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEee
Q psy17032 83 THVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDK 162 (283)
Q Consensus 83 ~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~ 162 (283)
+.||++|+|||+++++++||+||+++.++||.+.. +..+..+. ..+.|....++.|+.|.+.+.+...+.+++++ .
T Consensus 55 ~~vI~~GvAGgl~~~l~vGDvVva~~~~~~D~g~~-~~~g~~~~--~~~~~~~~~~~~d~~l~~~~~~~l~~~~~~~~-~ 130 (212)
T PRK08236 55 DLVVSAGIAGGFPGKAEVGSLVVADEIIAADLGAE-TPDGFLPV--DELGFGTTTIQVDPALVRQLTEALLAAALGAT-A 130 (212)
T ss_pred CEEEEEecccCCCCCCCCCCEEEEeeEEeccCCCC-CccCcCcc--ccccCCcceecCCHHHHHHHHHHHHhcCCCeE-E
Confidence 99999999999999999999999999999886421 10000000 01223333567899999999888888788999 8
Q ss_pred eeEEEecCCcccC-HHHHHHH-HHc-CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCC
Q psy17032 163 GTAVCIEGPRFSS-RAESNLF-RSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDC 219 (283)
Q Consensus 163 G~~~~~~Gp~fet-~aE~~~~-~~~-Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~ 219 (283)
|++ ++|++|.. +++.+.+ +++ ++.+++||+++++++|+.+|+||+.||+|||.+.
T Consensus 131 G~i--~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~~~vPf~~iR~ISD~~~ 188 (212)
T PRK08236 131 GPV--LTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAAAGLPVLELRAISNPVG 188 (212)
T ss_pred eeE--EecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 998 69999974 4455656 568 8999999999999999999999999999999984
No 36
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.92 E-value=1.1e-23 Score=192.85 Aligned_cols=186 Identities=14% Similarity=0.133 Sum_probs=135.5
Q ss_pred EEECCeEEEEEeccCCCcccCCCccchHHHHHHHHH------cCCCEEEEecccccCCCCCCCCcEEEecccccccCCCc
Q psy17032 44 GTIQGVDCVILARHGRKHTINPSNVNYRANIWALKS------VGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRI 117 (283)
Q Consensus 44 G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~------~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~ 117 (283)
|+|+|++|++++ ||+|+ ++++..++.|.. ++++.||++|+|||+ ++++||+||++..++++....
T Consensus 73 g~ykg~~V~v~s-tGIG~------psaaI~~~ELi~~~~~~~~~~~~IIRiGtaG~l--~i~iGDvVIat~a~~~d~~~~ 143 (287)
T TIGR01719 73 AMYKVGPVLCVS-HGMGI------PSISIMLHELIKLLYYARCKNPTFIRIGTSGGI--GVPPGTVVVSSEAVDACLKPE 143 (287)
T ss_pred EEEccEEEEEEe-cCCCc------chHHHHHHHHHHhhhhcCCCCceEEEEeccccC--CCCCCCEEEEchhhhcccCch
Confidence 899999999995 99996 676644555544 355589999999999 799999999999998875321
Q ss_pred ccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHH--cCCcEEeeeeEEEecCCcccCH-------------HH-H--
Q psy17032 118 QTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKE--LGFKFHDKGTAVCIEGPRFSSR-------------AE-S-- 179 (283)
Q Consensus 118 ~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~--~g~~~~~~G~~~~~~Gp~fet~-------------aE-~-- 179 (283)
+.... ++. ...+.+.+|++|.+.+.+++++ .|+++| .|++ ++||+|.+. .+ .
T Consensus 144 ---~~~~~---~~~-~~~~~~~aD~~L~~~l~~aa~~~~~~~~~~-~G~i--~S~D~Fy~~q~r~~~~~~~~~~~~~~~~ 213 (287)
T TIGR01719 144 ---YEQIV---LGK-RVIRPTQLDEALVQELLLCGAEGLDEFTTV-SGNT--MCTDDFYEGQGRLDGAFCEYTEKDKMAY 213 (287)
T ss_pred ---Hhhcc---cCC-CcccCCCCCHHHHHHHHHHHHhhcCCCCeE-EEEE--ccCCcccCCCCcccccccccchhhhHHH
Confidence 11000 110 0112356899999999999999 789999 9997 699999763 22 2
Q ss_pred -HHHHHcCCcEEecCchHHHHHHHHcCCcEEEEE-EeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 180 -NLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA-MATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 180 -~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~-~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
+.+..+|+++||||+++++++|+.+|+|+++|+ +++|...+. ....+ +++++.. ..+..+++.++|++.
T Consensus 214 i~~~~~~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~~~--~~~~~-~~~~~~~---~~~~~~~~~~~i~~~ 284 (287)
T TIGR01719 214 LRKLYALGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLEGD--QITIT-RDQLHEF---EQRPQRLVSRYIKKK 284 (287)
T ss_pred HHHHHHcCCeEEehhHHHHHHHHHHcCCcEEEEEEeeeccccCC--ccccc-hhHHHHH---HHHHHHHHHHHHHHH
Confidence 334456999999999999999999999999999 678876442 11112 4444433 334556777777653
No 37
>PRK08292 AMP nucleosidase; Provisional
Probab=99.92 E-value=1.2e-23 Score=201.36 Aligned_cols=194 Identities=10% Similarity=0.060 Sum_probs=142.3
Q ss_pred ccEE-EEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCc
Q psy17032 39 DVLL-QGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRI 117 (283)
Q Consensus 39 ~~~~-~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~ 117 (283)
.++| ...++|++|++++ +|+|+ +|++.++.+|..+|++.+|++|+||||++++++||+||++..+++++..+
T Consensus 265 mp~y~l~~~~G~~Vtvvs-sGIGp------snAA~ateeLa~lgpd~iIriGtAGgL~~~lkiGDvVIA~aavr~DGt~d 337 (489)
T PRK08292 265 MPAYHLIRADGQGITLVN-IGVGP------SNAKTITDHLAVLRPHAWLMIGHCGGLRNSQRIGDYVLAHAYLRDDHVLD 337 (489)
T ss_pred CcceEeeccCCceEEEEE-cCCCH------HHHHHHHHHHHHcCCCEEEEEEehhcCCCCCCCCCEEEECceEeCCcccc
Confidence 3444 4556789999994 99995 78765667899999999999999999999999999999999999987533
Q ss_pred ccccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc--------CCcEEeeeeEEEecCCcccCH---HH-HHHHHHc
Q psy17032 118 QTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL--------GFKFHDKGTAVCIEGPRFSSR---AE-SNLFRSW 185 (283)
Q Consensus 118 ~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~--------g~~~~~~G~~~~~~Gp~fet~---aE-~~~~~~~ 185 (283)
.. +. .. ...+.+.++...+.+++++. +.++| .|++ ++||+|... .+ .+.|++.
T Consensus 338 ~~-~p---------~e--vPa~a~~el~~aL~~aa~ev~~~~g~elg~~~h-~G~V--~SgD~F~~e~~~~~l~~~~~~~ 402 (489)
T PRK08292 338 AV-LP---------PW--IPIPAIAEVQVALEDAVAEVTGLPGEELKRRMR-TGTV--VTTDDRNWELRYSASALRFNQS 402 (489)
T ss_pred cc-cc---------cc--cCcCCcHHHHHHHHHHHHHHhhhcccccCCceE-EEEE--EecCcCCCcCchHHHHHHhhhc
Confidence 21 11 11 12355677777777777654 78899 9998 599998531 23 2456677
Q ss_pred CCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17032 186 NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 257 (283)
Q Consensus 186 Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~~ 257 (283)
|+.+||||+|+++++|+.+|+|+++|++|||.....+-+.+.+.+++... ..++..++..+.++.|.++
T Consensus 403 gAlAVEMESAALa~va~~~gVP~gaIr~VSD~~~~~E~k~~~~a~~~~~~---~~~~hi~igi~A~~~L~~~ 471 (489)
T PRK08292 403 RAVALDMESATIAANGYRFRVPYGTLLCVSDKPLHGEIKLPGQANAFYEG---AVSQHLQIGIRAIELLRAE 471 (489)
T ss_pred CCEEEehhHHHHHHHHHHhCCCEEEEEEEEecCCCCCccCcchhHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998754221222233455443 3334445666677766543
No 38
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=180.36 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=144.2
Q ss_pred EEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccc
Q psy17032 41 LLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTF 120 (283)
Q Consensus 41 ~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~ 120 (283)
-|+|+|+|++|.++ .||+|- |+..+ |. .++++.+||+.||++|+||+++++++++|+||+....-...-+..
T Consensus 48 gfTGtYKGk~iSvm-g~GmGi--pS~sI-Y~--~ELi~~y~Vk~iIRvGt~Gal~~~v~l~DvVia~~A~tds~~~~~-- 119 (236)
T COG0813 48 GFTGTYKGKKISVM-GHGMGI--PSISI-YS--RELITDYGVKKIIRVGTCGALSEDVKLRDVVIAQGASTDSNVNRI-- 119 (236)
T ss_pred cccceecCcEEEEE-EecCCC--ccHHH-HH--HHHHHHhCcceEEEEEccccccCCcccceEEEeccccCcchhhhc--
Confidence 46799999999999 488873 33333 33 678899999999999999999999999999999877643322111
Q ss_pred cCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCH-HHH-HHHHHcCCcEEecCchHHH
Q psy17032 121 FDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSR-AES-NLFRSWNAHLVNMTLVPEV 198 (283)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~-aE~-~~~~~~Gad~V~Me~aaea 198 (283)
++.+. ++.+.+|++|...+.+.|+++|+++| .|.+ .+.|.|.++ .+. +.|+++|..+||||+++..
T Consensus 120 -------~f~~~--df~~~ad~~Ll~~a~~~A~e~gi~~h-vgnv--~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY 187 (236)
T COG0813 120 -------RFKPH--DFAPIADFELLEKAYETAKELGIDTH-VGNV--FSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALY 187 (236)
T ss_pred -------ccCcc--cccccCCHHHHHHHHHHHHHhCCcee-eeee--eeeecccCCCHHHHHHHHHhCCcEEEeeHHHHH
Confidence 12221 33567899999999999999999999 8987 467888755 343 4678999999999999999
Q ss_pred HHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17032 199 VLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVP 252 (283)
Q Consensus 199 ~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~ 252 (283)
.+|+++|.+.++|+.|||.-.- ++..+.+|....+.+ +.++.++++.
T Consensus 188 ~~A~~~~~~Al~ilTVSD~l~t---~E~~s~eeRq~tF~~----M~~iaLe~~~ 234 (236)
T COG0813 188 AVAAEYGKKALTILTVSDHLVT---GEETSAEERQNTFND----MIEIALESAI 234 (236)
T ss_pred HHHHHhCcceEEEEEeeccccC---cccCCHHHHHHHHHH----HHHHHHHHHh
Confidence 9999999999999999998643 567788877665543 4445555543
No 39
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.91 E-value=3.7e-23 Score=186.52 Aligned_cols=184 Identities=14% Similarity=0.033 Sum_probs=139.6
Q ss_pred CeEEEEEeccCCCcccCCCccchHHHHHHH-HHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCC
Q psy17032 48 GVDCVILARHGRKHTINPSNVNYRANIWAL-KSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSEN 126 (283)
Q Consensus 48 G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l-~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~ 126 (283)
|.+|.+++ +|+|. .+++..+++| ..+|++.||++|+||||++++++||+||++..+++++.... | .
T Consensus 59 ~~~itv~~-~GvG~------psAai~~eeL~~~~G~k~iIriGtcG~L~~~i~iGDiVI~~aAir~dgts~~--Y--~-- 125 (266)
T TIGR01721 59 AEGTSIID-FKLGS------PGAALIXDLCSFLPHPKAAIMLGMCGGLRSHYQVGDYFVPVASIRGEGTSDA--Y--F-- 125 (266)
T ss_pred CCCEEEEE-CCCCH------HHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCEEEEcceEeccCchhh--c--C--
Confidence 77888995 99995 5655556666 67899999999999999999999999999999998875321 1 1
Q ss_pred CCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCc-c-cCHHHH-HHHHHcCCcEEecCchHHHHHHHH
Q psy17032 127 SPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPR-F-SSRAES-NLFRSWNAHLVNMTLVPEVVLAKE 203 (283)
Q Consensus 127 ~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~-f-et~aE~-~~~~~~Gad~V~Me~aaea~vA~~ 203 (283)
+ +......|++|.+.+.+++++++++++ .|+++ ++|. | +++.+. +.|++.|+.+||||+++++++|+.
T Consensus 126 ----p--~~~p~~~d~~l~~~l~~a~~~~g~~~~-~G~v~--TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ava~~ 196 (266)
T TIGR01721 126 ----P--PEVPALANFVVQKAITSALENKGKDYH-IGITH--TTNIRFWEFNKKFRDKLYETKAQGVEMECATLFTAGYR 196 (266)
T ss_pred ----C--cccCCCCCHHHHHHHHHHHHHcCCCeE-EEEEE--cCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHHHHHHH
Confidence 1 112345689999999999999999999 89985 5653 4 666654 457889999999999999999999
Q ss_pred cCCcEEEEEEeeecCCCcCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17032 204 AGLLYAAVAMATDYDCWRDTGN-KVCVADVLKTFKENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 204 ~gv~~~~i~~vsd~a~~~~~~~-~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~ 256 (283)
+|+|+++|++|||.....+... .-+.+++++. ...+..++..+.+.+|.+
T Consensus 197 ~~vp~~~il~VSD~~~~~e~~k~~~~~~~~~~~---~~~~~~~~~lea~~~l~~ 247 (266)
T TIGR01721 197 RNLPXGALLLISDLPLRPEGIKTKESDQLVTDT---YTEEHILTGIEVLEILRE 247 (266)
T ss_pred cCCCeEEEEEECCCCCCCCccccccchhhHHHH---HHHHHHHHHHHHHHHHHh
Confidence 9999999999999975421001 2234445443 333455677777777644
No 40
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.91 E-value=6.1e-23 Score=196.04 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=142.9
Q ss_pred EEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccc
Q psy17032 41 LLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTF 120 (283)
Q Consensus 41 ~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~ 120 (283)
++.++.+|++|++++ +|+|+ +|+++.++.|..+|++.+|++|+||||++++++||+||++..+++++..+. +
T Consensus 256 Y~l~~~~g~~Itvvs-tGIGp------snAaaiteeLa~lgp~~iI~iGscGgL~~~ikiGDlVIataAvR~DGtsd~-y 327 (477)
T TIGR01717 256 YHLITADGDGITLVN-IGVGP------SNAKTITDHLAVLRPHAWLMIGHCGGLRESQRIGDYVLAHAYLREDHVLDA-V 327 (477)
T ss_pred EEEEeeCCceEEEEE-CCCCH------HHHHHHHHHHHHcCCCEEEEEEccccCCCCCCCCCEEEEeeEEecCcchhh-h
Confidence 444778999999995 99995 777666688999999999999999999999999999999999999875332 1
Q ss_pred cCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc--------CCcEEeeeeEEEecCCccc----CHHHHHHHHHcCCc
Q psy17032 121 FDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL--------GFKFHDKGTAVCIEGPRFS----SRAESNLFRSWNAH 188 (283)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~--------g~~~~~~G~~~~~~Gp~fe----t~aE~~~~~~~Gad 188 (283)
+ .+ ....+.++.+...+.+++++. +.++| .|++ .++|+|. +....+.|+..|+.
T Consensus 328 l--------p~---~~Papa~~~l~~aL~~Aa~~~~g~~g~el~~~~h-~G~V--~StD~F~~el~~~~~~~~l~~~gAl 393 (477)
T TIGR01717 328 L--------PP---DIPIPAIAEVQRALEDAVAEVTGRPGEELKRRLR-TGTV--LTTDDRNWELRYSASALRLNLSRAI 393 (477)
T ss_pred c--------cc---ccCCCCcHHHHHHHHHHHHHhhcccccccCCceE-EEEE--EecCcCcccCCCHHHHHHHHhCCCE
Confidence 1 11 122567888988888888763 56799 9998 5899875 33334567778999
Q ss_pred EEecCchHHHHHHHHcCCcEEEEEEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17032 189 LVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 255 (283)
Q Consensus 189 ~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~ 255 (283)
+||||+++++++|+.+|+|+++|++|||.....+-+.+.+.+++..... +...++..+.++.|.
T Consensus 394 AVEMESAALaava~~~gVP~gaLr~VSD~~l~~Eik~~~~a~~~~~~~~---~~hi~igi~al~~L~ 457 (477)
T TIGR01717 394 AVDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANAFYEGAV---SQHLQIGIRAIDLLR 457 (477)
T ss_pred EEehhHHHHHHHHHHhCCCEEEEEEEEEcCCCCCccCcchhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874432122233345544322 333455555666554
No 41
>PRK07077 hypothetical protein; Provisional
Probab=99.90 E-value=3e-22 Score=178.17 Aligned_cols=175 Identities=17% Similarity=0.196 Sum_probs=132.0
Q ss_pred hHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCHHHHHHHH
Q psy17032 70 YRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIII 149 (283)
Q Consensus 70 ~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~ 149 (283)
.++..+++...|++.||++|+||||+|++++||+||+++++++++ .+++|+.|.+.+.
T Consensus 42 ~~a~~~~~~~~~~~~vIs~G~AGgL~p~l~vGDvVva~~v~~~~g----------------------~~~~d~~l~~~l~ 99 (238)
T PRK07077 42 ERALLAAFDARGCAGIVSFGVAGGLDPDLAPGDLVVATAVDAPFG----------------------RVDTDARWSARLA 99 (238)
T ss_pred HHHHHHHHHhcCCCEEEEEEeccccCCCCCCCcEEEEeeeecCCC----------------------cCcCCHHHHHHHH
Confidence 444566777899999999999999999999999999998764321 2457899999998
Q ss_pred HHHHHc--CCcEEeeeeEEEecCCcccCHHH-HHHH-HHcCCcEEecCchHHHHHHHHcCCcEEEEEEeeecCCC-----
Q psy17032 150 DSLKEL--GFKFHDKGTAVCIEGPRFSSRAE-SNLF-RSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW----- 220 (283)
Q Consensus 150 ~~a~~~--g~~~~~~G~~~~~~Gp~fet~aE-~~~~-~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~vsd~a~~----- 220 (283)
+...+. +.+++ .|.+ ++||+|.+..+ ++.+ +++|+++||||+++++++|+++|+||++||+|||.++.
T Consensus 100 ~~l~~~~~~~~v~-~G~i--~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~giPf~viR~ISD~a~~~LP~~ 176 (238)
T PRK07077 100 AALELTPVARRVV-RGGL--AGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARGLPFAACRVIVDPAWRTLPAA 176 (238)
T ss_pred HHHHhccCCCceE-EEEE--EecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcCCCEEEEEEEEeccCccCchh
Confidence 887654 46789 8998 59999976554 4555 56899999999999999999999999999999999861
Q ss_pred ----cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHhhhhh
Q psy17032 221 ----RDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVET 272 (283)
Q Consensus 221 ----~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~~~~~~~~~~~~~~~~~ 272 (283)
...+..+++..|+..+.+....+..|+.-.. ..+.-..++..|+.++..
T Consensus 177 ~~~~~~~~g~~~~~~~l~~l~r~P~~i~~Ll~l~~---~a~~A~~~L~~~~~~~~~ 229 (238)
T PRK07077 177 ATAGLRDDGSTDILPILRGLARQPSQLGALLQVAI---DARAARRSLRQARHALGR 229 (238)
T ss_pred HHhhcCCCcCcCHHHHHHHHHhChHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 1125678899999877776654444433211 234444556666666543
No 42
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.89 E-value=4.8e-22 Score=173.52 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=133.7
Q ss_pred cEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCccc
Q psy17032 40 VLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQT 119 (283)
Q Consensus 40 ~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t 119 (283)
..|+|+|+|++|++++ ||+|. ...+.+++.|.++|++++|+.|++|||+|++++||+||.+..+..++.+..
T Consensus 49 ~~~~g~~~g~~v~v~S-tGIGg------PSaaIAvEEL~~lGa~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~dG~s~~- 120 (248)
T COG2820 49 RTYTGTYNGKPVTVCS-TGIGG------PSAAIAVEELARLGAKTFIRVGTTGALQPDINVGDVVVATGAVRLDGASKH- 120 (248)
T ss_pred EEEEEEEcCeEEEEEe-cCCCC------chHHHHHHHHHhcCCeEEEEeeccccccCCCCCCCEEEecccccccccccc-
Confidence 6899999999999996 99995 223346999999999999999999999999999999999999999884321
Q ss_pred ccCCCCCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCccc----------CHHH---HHHHHHcC
Q psy17032 120 FFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS----------SRAE---SNLFRSWN 186 (283)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fe----------t~aE---~~~~~~~G 186 (283)
|. +..|| ..+|+++...+++++++.++++| .|+++ +.|.|- ++.. .+.|+++|
T Consensus 121 -y~-------~~~~P---Av~d~~~t~al~~aa~~~~~~~~-vG~v~--S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~g 186 (248)
T COG2820 121 -YA-------PEEFP---AVADFELTNALVEAAESLGVTVH-VGVVA--SSDAFYGQERYYSGFVTPEFKESWEEWQDLG 186 (248)
T ss_pred -cc-------CCCCC---CCCCHHHHHHHHHHHHhcCCceE-EEEEe--ecccccccccccccccCcchHHHHHHHHHcC
Confidence 21 22233 46899999999999999999999 99985 667776 4433 45688899
Q ss_pred CcEEecCchHHHHHHHHcCCcEEEEEE-eeecCCC
Q psy17032 187 AHLVNMTLVPEVVLAKEAGLLYAAVAM-ATDYDCW 220 (283)
Q Consensus 187 ad~V~Me~aaea~vA~~~gv~~~~i~~-vsd~a~~ 220 (283)
...+|||+++++.+|+.+|++..++.. |+|.-.+
T Consensus 187 v~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~ 221 (248)
T COG2820 187 VLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQG 221 (248)
T ss_pred chhhHHHHHHHHHHHHHcCcccccEEEEEcccccc
Confidence 999999999999999999999999988 8887643
No 43
>PRK05634 nucleosidase; Provisional
Probab=99.83 E-value=8.2e-20 Score=157.34 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=107.6
Q ss_pred cCCCcccCCCccchHH-HHHHHH--HcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCccc
Q psy17032 57 HGRKHTINPSNVNYRA-NIWALK--SVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLH 133 (283)
Q Consensus 57 ~G~g~~~~~~~V~~~a-~~~~l~--~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~ 133 (283)
+|+|+ +|++. ..++|. .++++.||++|+|||++++++ |+|+++..+++|.+. +.+... +++
T Consensus 28 sGIGk------vnaA~~~~~~L~~~~~~p~~iIn~G~AG~l~~~l~--~vv~~~~v~~~D~~~--~~~~~~------~~~ 91 (185)
T PRK05634 28 TGIGK------VAAAVALTRALARRGVLPPRVVNIGTAGALRDGLS--GVFEPSHVINHDFSS--DLIRAL------TGH 91 (185)
T ss_pred cCCCH------HHHHHHHHHHHHhcCCCCCEEEEeecccCCCcCCC--eEEEEeeEEEcccCc--cccccc------cCc
Confidence 79996 88774 456665 599999999999999999987 899999999987642 222110 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH-HHHHcCCcEEecCchHHHHHHHHcCCcEEEEE
Q psy17032 134 IPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN-LFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 134 ~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~-~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~ 212 (283)
. +. +...++.+..|++ .+||+|.+..+.+ .+++ ++++|+||+++++++|+++|+||++||
T Consensus 92 ~-----~~-----------~~~~~~~~~~g~i--~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva~va~~~~vPf~~iR 152 (185)
T PRK05634 92 P-----VA-----------NRLELPTGDGAVL--ATGDAFISDTATRDRLAQ-RADLVDMEGYAVAAVAAEFGVPCRLVK 152 (185)
T ss_pred c-----cc-----------cccccccCCCceE--ecCCceecCHHHHHHHhc-cCeEEecHHHHHHHHHHHhCCCEEEEE
Confidence 0 00 0011222224665 6999998776654 4655 789999999999999999999999999
Q ss_pred EeeecCCCcCCCCccCHHHHHHHHHHHHH
Q psy17032 213 MATDYDCWRDTGNKVCVADVLKTFKENVE 241 (283)
Q Consensus 213 ~vsd~a~~~~~~~~~~~~e~~~~~~~~~~ 241 (283)
+|||.++. +...+|+++++.+.+++.
T Consensus 153 ~ISD~a~~---~~~~~~~~~~~~aa~~~~ 178 (185)
T PRK05634 153 HVSDSADE---SALGSWPEAVDASARELG 178 (185)
T ss_pred EeccCCCC---cccccHHHHHHHHHHHHH
Confidence 99999854 466788888877666543
No 44
>KOG3728|consensus
Probab=98.45 E-value=1.7e-06 Score=76.00 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=122.0
Q ss_pred ECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCC--EEEEecccccCCCCCCCCcEEEecccccccCCCcccccCC
Q psy17032 46 IQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCT--HVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDG 123 (283)
Q Consensus 46 ~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~--~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~ 123 (283)
|+=-||.+++ ||+|- |+-.|-..-.+.+|...+|+ .+|++|++||+- ++||.+|++++.+|---......
T Consensus 96 YKvGPVl~vs-HGmGt--pS~SImlhEliKLl~~Arckdp~~iRiGT~GGiG--v~pGTvV~s~~A~n~~l~~e~eq--- 167 (308)
T KOG3728|consen 96 YKVGPVLCVS-HGMGT--PSFSIMLHELIKLLYYARCKDPVFIRIGTCGGIG--VPPGTVVASKNAFNGLLRNEHEQ--- 167 (308)
T ss_pred EeecceEEEe-cCCCC--ccHHHHHHHHHHHHHHccCCCceEEEEeccCccC--CCCccEEEehhhhhhhhhhhHHh---
Confidence 3334888886 99984 22223222246777888887 689999999995 99999999999887433211100
Q ss_pred CCCCCCCcccCCCCCCCCHHHHHHHHHHHHHc--CCcEEeeeeEEEecCCcccC----------HHH---H---HHHHHc
Q psy17032 124 SENSPNGVLHIPMEPAFDNSTRQIIIDSLKEL--GFKFHDKGTAVCIEGPRFSS----------RAE---S---NLFRSW 185 (283)
Q Consensus 124 ~~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~--g~~~~~~G~~~~~~Gp~fet----------~aE---~---~~~~~~ 185 (283)
...|.+... ....|++|++.+.....+. +++.. .|...++. |-||- ..| . +.++.+
T Consensus 168 ---iilGkrv~R-paqld~~l~~eL~~~~~e~~d~~~ti-~gnTmctd-dFYEGQgRlDGa~CdysEkdK~afLek~~a~ 241 (308)
T KOG3728|consen 168 ---IILGKRVVR-PAQLDKKLIRELLAFGVEANDGFQTI-SGNTMCTD-DFYEGQGRLDGAFCDYSEKDKMAFLEKLHAL 241 (308)
T ss_pred ---hhccceeec-hhhhhHHHHHHHHHhCCccCCCCcee-eccceecc-hhhcccccccccccCcchhhHHHHHHHHHHc
Confidence 012322111 2468999999999888876 57766 56555443 33342 122 2 234457
Q ss_pred CCcEEecCchHHHHHHHHcCCcEEEEEE-eeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17032 186 NAHLVNMTLVPEVVLAKEAGLLYAAVAM-ATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 254 (283)
Q Consensus 186 Gad~V~Me~aaea~vA~~~gv~~~~i~~-vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l 254 (283)
|.--+|||+.--|.++...|+..+.+++ +-|...|. ..-...|.+....+ +=..|+...|+++
T Consensus 242 GVrNIEMEss~FAs~t~~~G~kaavVCVtLlnRl~GD---Qi~~~ke~~~Eyeq---RP~~lVs~yIkk~ 305 (308)
T KOG3728|consen 242 GVRNIEMESSMFASVTQKAGVKAAVVCVTLLNRLKGD---QITIPKEQKHEYEQ---RPFRLVSRYIKKL 305 (308)
T ss_pred CceeeehhHHHHHHHHHhcCcchhhhHHHHHhhccCC---cccchHHHHHHHHh---ccHHHHHHHHHHH
Confidence 9999999999999999999999988875 44766552 33333444443333 3446777777764
No 45
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=92.87 E-value=1.5 Score=41.71 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=65.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEE
Q psy17032 132 LHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAV 211 (283)
Q Consensus 132 ~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i 211 (283)
+..+.+-+|++.|++.+.++|++.|++++ ..++ |.+-|.|..-.. .| .|+|.++|
T Consensus 259 ~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q-~~v~-----~~ggTDA~a~~~--~g-----------------~gvpta~I 313 (355)
T COG1363 259 RVKDASGIYHPKLRKFLLELAEKNNIPYQ-VDVS-----PGGGTDAGAAHL--TG-----------------GGVPTALI 313 (355)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCCeE-EEec-----CCCCccHHHHHH--cC-----------------CCCceEEE
Confidence 34555678999999999999999999999 5553 557777654322 22 38999999
Q ss_pred EEeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy17032 212 AMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 257 (283)
Q Consensus 212 ~~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~~ 257 (283)
+.-+.+.... -+.++-+++. ++.+||.++++++..+
T Consensus 314 gip~ry~Hs~--~e~~~~~D~~--------~~~~Ll~~~i~~~~~~ 349 (355)
T COG1363 314 GIPTRYIHSP--VEVAHLDDLE--------ATVKLLVAYLESLDRE 349 (355)
T ss_pred ecccccccCc--ceeecHHHHH--------HHHHHHHHHHHhcchh
Confidence 9999987542 2345555543 3456888888887644
No 46
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=86.75 E-value=27 Score=32.62 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=89.7
Q ss_pred EEEEEeccCCCcccCCCccchHHHHHHHH---H--cCCCEEEEecccccCCCC-CCCCcEEEecccccccCCC-------
Q psy17032 50 DCVILARHGRKHTINPSNVNYRANIWALK---S--VGCTHVIVSTATGSLQEE-IQPGDLVILDSFIDRTRTR------- 116 (283)
Q Consensus 50 ~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~---~--~Gv~~iI~tg~aG~l~~~-l~~GDiVi~~d~i~~~~~~------- 116 (283)
.|..+ .+|.|+ +|+++.+-+|- + |-=...|..|.|| ++|+ -.+|+++.++-.++.+-..
T Consensus 47 ~Vc~~-~tG~G~------~nAAasi~AL~ldp~FDls~tYfliaGIAG-v~P~~~tlGSvawA~~~Vd~dl~~eiD~Re~ 118 (314)
T PF06516_consen 47 GVCGI-TTGEGE------INAAASIMALGLDPRFDLSKTYFLIAGIAG-VDPKQGTLGSVAWARYVVDGDLQYEIDAREI 118 (314)
T ss_pred CEEEE-Eecccc------cchHHHHHHHhhCCccCCcceEEEEeeccc-CCcCcCceeeeeeeeeeechhhccccccccc
Confidence 34444 379885 88775444442 3 3344678888888 6776 4589999999888765421
Q ss_pred cc----ccc--CCC-CCCCCCcccCCCCCCCCHHHHHHHHHHHHHcCC-----------------------cEEeeeeEE
Q psy17032 117 IQ----TFF--DGS-ENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF-----------------------KFHDKGTAV 166 (283)
Q Consensus 117 ~~----t~~--~~~-~~~~~g~~~~~~~~~~d~~L~~~~~~~a~~~g~-----------------------~~~~~G~~~ 166 (283)
|. .++ +.. +.......+-...|.-++.|++.+.+.+++..+ .|. +|-.
T Consensus 119 P~~w~~Gy~~~g~~~P~~~p~~~~~tevf~LN~~L~~~A~~ltk~v~L~Ds~~~~~~R~~Y~~~~~A~~~P~V~-~gDt- 196 (314)
T PF06516_consen 119 PADWPTGYFPYGTKRPNQYPRSVYGTEVFELNPALVDWAYELTKDVELPDSPAAAAYRARYPGYPAAQRPPFVL-KGDT- 196 (314)
T ss_pred cCCCCCCCcccCCCCcccCCCCCCCceEEEcCHHHHHHHHHHhcCCccCCCHHHHHHHHhCCCCcccCCCCEEE-Eccc-
Confidence 00 001 000 000001111123467799999999999876533 134 5554
Q ss_pred EecCCcccCHH---H-HHHH-HHc--CCc---EEecCchHHHHHHHHcCC-------cEEEEEEeeecC
Q psy17032 167 CIEGPRFSSRA---E-SNLF-RSW--NAH---LVNMTLVPEVVLAKEAGL-------LYAAVAMATDYD 218 (283)
Q Consensus 167 ~~~Gp~fet~a---E-~~~~-~~~--Gad---~V~Me~aaea~vA~~~gv-------~~~~i~~vsd~a 218 (283)
++|+.|=+-+ | .+.| +-+ |.. ...||-.+...+-..++. +++++|.+||..
T Consensus 197 -~tsd~ywhG~~l~~~a~~~~~~~T~G~g~y~~T~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFd 264 (314)
T PF06516_consen 197 -LTSDTYWHGARLNEWAEDWVKLWTNGQGTYCTTAMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFD 264 (314)
T ss_pred -cccCCeeeCcHHHHHHHHHHHHHhCCcccEechHHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCC
Confidence 4667774422 2 1223 333 422 346776666555444332 699999999986
No 47
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=82.51 E-value=0.68 Score=40.08 Aligned_cols=54 Identities=33% Similarity=0.421 Sum_probs=34.9
Q ss_pred EECCeEEEEEeccCCCc--ccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCC
Q psy17032 45 TIQGVDCVILARHGRKH--TINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPG 101 (283)
Q Consensus 45 ~~~G~~Vv~~~r~G~g~--~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~G 101 (283)
-+.|.++|+-. .|-.- .-+.+.-...+.+.+++..|+.+++..|-||+|. +.+|
T Consensus 59 ~l~g~DaVIsA-~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~--id~g 114 (211)
T COG2910 59 DLAGHDAVISA-FGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE--IDEG 114 (211)
T ss_pred hhcCCceEEEe-ccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE--EcCC
Confidence 35688888864 44331 1111122223457788899999999999999986 4444
No 48
>KOG1430|consensus
Probab=77.07 E-value=22 Score=33.90 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=67.0
Q ss_pred CccchH---HHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEecccccccCCCcccccCCCCCCCCCcccCCCCCCCCH
Q psy17032 66 SNVNYR---ANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDN 142 (283)
Q Consensus 66 ~~V~~~---a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~d~ 142 (283)
.+||.- ..+....++|++++|.|+|++=.-+.-. .+|-+-.-| + . ..|.+ .+..++
T Consensus 99 ~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~---------~~n~~E~~p---~-------p-~~~~d-~Y~~sK 157 (361)
T KOG1430|consen 99 MRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP---------IINGDESLP---Y-------P-LKHID-PYGESK 157 (361)
T ss_pred eeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee---------cccCCCCCC---C-------c-ccccc-ccchHH
Confidence 345533 2477889999999999999875433222 233322111 1 0 11222 233445
Q ss_pred HHHHHHHHHHHH-cCC---cEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec-----------CchHHHHHHHHcCCc
Q psy17032 143 STRQIIIDSLKE-LGF---KFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM-----------TLVPEVVLAKEAGLL 207 (283)
Q Consensus 143 ~L~~~~~~~a~~-~g~---~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M-----------e~aaea~vA~~~gv~ 207 (283)
.+.+.+...|.. .++ -+++.|+|. .|++...+.-..+++..+..-.-+ +.++.+++|+...+.
T Consensus 158 a~aE~~Vl~an~~~~l~T~aLR~~~IYG--pgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~ 235 (361)
T KOG1430|consen 158 ALAEKLVLEANGSDDLYTCALRPPGIYG--PGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALL 235 (361)
T ss_pred HHHHHHHHHhcCCCCeeEEEEccccccC--CCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHH
Confidence 555555444432 112 245567774 888888877666666544433333 448888888887776
No 49
>PRK09864 putative peptidase; Provisional
Probab=72.13 E-value=64 Score=30.72 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=59.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEE
Q psy17032 134 IPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 134 ~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~ 213 (283)
.+-...+++.|++.++++|++.|++++ ..+. + ..-|.+. .++..+ .|+|.+.|++
T Consensus 256 ~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-~~~~---~--~ggTDa~--~i~~~~-----------------~Gvpt~~isi 310 (356)
T PRK09864 256 FDKRYFPNQKLVAALKSCAAHNDLPLQ-FSTM---K--TGATDGG--RYNVMG-----------------GGRPVVALCL 310 (356)
T ss_pred ccCCccCCHHHHHHHHHHHHHcCCCce-EEEc---C--CCCchHH--HHHHhC-----------------CCCcEEEEee
Confidence 344678999999999999999999998 4432 2 1244433 222222 3899999998
Q ss_pred eeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17032 214 ATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 214 vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~ 256 (283)
-+=+..-. -+.++.+++.. +.+|+.++++++.+
T Consensus 311 P~RY~Hs~--~e~~~~~D~e~--------~~~Ll~~~~~~l~~ 343 (356)
T PRK09864 311 PTRYLHAN--SGMISKADYDA--------LLTLIRDFLTTLTA 343 (356)
T ss_pred ccCcCCCc--ceEeEHHHHHH--------HHHHHHHHHHhcch
Confidence 77765332 35667777633 44688888887754
No 50
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=69.29 E-value=59 Score=30.83 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=57.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEE
Q psy17032 133 HIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 133 ~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~ 212 (283)
+.+-...+++.|++.+.++|++.|++++ . . .+|- -|.+.. +++++ .|+|.+.|+
T Consensus 256 ~~D~~~i~~~~l~~~l~~~A~~~~I~~Q-~-~---~~~g--GtDa~~------------------~~~~~-~Gvpt~~i~ 309 (350)
T TIGR03107 256 FFDPGHIMLPRMKDFLLTTAEEAGIKYQ-Y-Y---VAKG--GTDAGA------------------AHLKN-SGVPSTTIG 309 (350)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCcE-E-e---cCCC--CchHHH------------------HHHhC-CCCcEEEEc
Confidence 3444789999999999999999999988 3 2 2321 343332 22221 388888888
Q ss_pred EeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17032 213 MATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 256 (283)
Q Consensus 213 ~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~~ 256 (283)
+-.-+..-. .+.++.+++. ++.+|+.++++.+.+
T Consensus 310 ip~Ry~Hs~--~e~i~~~D~~--------~~~~Ll~~~i~~l~~ 343 (350)
T TIGR03107 310 VCARYIHSH--QTLYSIDDFL--------AAQAFLQAIVKKLDR 343 (350)
T ss_pred cCcccccCh--hheeeHHHHH--------HHHHHHHHHHHhcCH
Confidence 876665322 3455566553 345688888887743
No 51
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=67.70 E-value=20 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccC
Q psy17032 140 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS 175 (283)
Q Consensus 140 ~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet 175 (283)
...++++.+.++|++.|++++ -|+| .++..|.+
T Consensus 62 ~~~d~l~~~L~~A~~~Gmkv~-~Gl~--~~~~~w~~ 94 (166)
T PF14488_consen 62 PPVDLLEMILDAADKYGMKVF-VGLY--FDPDYWDQ 94 (166)
T ss_pred CcccHHHHHHHHHHHcCCEEE-EeCC--CCchhhhc
Confidence 467799999999999999999 8998 46666653
No 52
>PRK09961 exoaminopeptidase; Provisional
Probab=67.36 E-value=60 Score=30.58 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=54.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEE
Q psy17032 133 HIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 133 ~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~ 212 (283)
+.+....+++.+++.++++|++.+++++ .... . .+-|.+- .++.++ .|+|.+.|+
T Consensus 247 ~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-~~~~---~--ggGTDa~------------------~~~~~~-~Giptv~ig 301 (344)
T PRK09961 247 LSDKSLIAPPKLTAWIETVAAEIGIPLQ-ADMF---S--NGGTDGG------------------AVHLTG-TGVPTVVMG 301 (344)
T ss_pred EccCCcCCCHHHHHHHHHHHHHcCCCcE-EEec---C--CCcchHH------------------HHHHhC-CCCCEEEec
Confidence 3345789999999999999999999988 3322 2 1123322 222221 377888777
Q ss_pred EeeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17032 213 MATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 255 (283)
Q Consensus 213 ~vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l~~l~ 255 (283)
.=..+.... .+.++.+++.. +.+|+.++++.+.
T Consensus 302 ~p~ry~Hs~--~E~v~~~D~~~--------~~~Ll~~~i~~l~ 334 (344)
T PRK09961 302 PATRHGHCA--ASIADCRDILQ--------MIQLLSALIQRLT 334 (344)
T ss_pred hhhhcccCh--hheEEHHHHHH--------HHHHHHHHHHHcC
Confidence 665554322 35566666543 3457888777664
No 53
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=66.93 E-value=14 Score=33.44 Aligned_cols=60 Identities=20% Similarity=0.409 Sum_probs=42.4
Q ss_pred HHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec-C------chHHHHHHHHcCCcEEEEEEeee
Q psy17032 153 KELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM-T------LVPEVVLAKEAGLLYAAVAMATD 216 (283)
Q Consensus 153 ~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M-e------~aaea~vA~~~gv~~~~i~~vsd 216 (283)
.+++++ .+.|+...|| |....|..+|+++++|+|=- + +-.=...|+++|+|++.|.==.|
T Consensus 167 ~~~~~p---~~~Iia~~GP-fs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp~~ 233 (257)
T COG2099 167 EDLGVP---PARIIAMRGP-FSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERPID 233 (257)
T ss_pred HhcCCC---hhhEEEecCC-cChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecCCc
Confidence 344544 3456678888 77778889999999987622 1 12346899999999999875533
No 54
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.00 E-value=34 Score=30.97 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=40.5
Q ss_pred HHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec-Cc------hHHHHHHHHcCCcEEEEEE
Q psy17032 151 SLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM-TL------VPEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 151 ~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M-e~------aaea~vA~~~gv~~~~i~~ 213 (283)
.+.++|++-. .++...|| |....|..+|+++++|++=. ++ -.=..+|+++|+|++.|.=
T Consensus 166 ~~~~~G~~~~---~iia~~gP-fs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~R 231 (256)
T TIGR00715 166 QALKLGFPSD---RIIAMRGP-FSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIAR 231 (256)
T ss_pred HHHHcCCChh---cEEEEeCC-CCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeC
Confidence 5666777643 24457777 55556778899999987632 21 2345789999999998863
No 55
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=57.86 E-value=1e+02 Score=27.91 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHcCCCEEEEecccccCCCCC
Q psy17032 74 IWALKSVGCTHVIVSTATGSLQEEI 98 (283)
Q Consensus 74 ~~~l~~~Gv~~iI~tg~aG~l~~~l 98 (283)
.+.+.+.|++.|..+|+.++...+.
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred HHHHHHcCCCEEEEECCCccccccc
Confidence 5677889999999999888765443
No 56
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=55.74 E-value=57 Score=28.44 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc------hHHHHHHHHc
Q psy17032 134 IPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL------VPEVVLAKEA 204 (283)
Q Consensus 134 ~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~------aaea~vA~~~ 204 (283)
+.++.+|-..+.+-+.++|++.|+.+. . .........|. +.+...++|.+=... -+....+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~g~~~~-~------~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06309 7 VGAESPWRTAETKSIKDAAEKRGFDLK-F------ADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA 79 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEE-E------eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC
Confidence 345677888999999999999998876 1 11222222333 233334555332111 2445667889
Q ss_pred CCcEEEEEE
Q psy17032 205 GLLYAAVAM 213 (283)
Q Consensus 205 gv~~~~i~~ 213 (283)
|+|++.+-.
T Consensus 80 ~iPvV~~~~ 88 (273)
T cd06309 80 GIPVILVDR 88 (273)
T ss_pred CCCEEEEec
Confidence 999998764
No 57
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=53.33 E-value=29 Score=31.22 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=35.5
Q ss_pred eeEEEecCCcccCHHHHHHHHHcCCcEEec--Cch----HHHHHHHHcCCcEEEEEE
Q psy17032 163 GTAVCIEGPRFSSRAESNLFRSWNAHLVNM--TLV----PEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 163 G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M--e~a----aea~vA~~~gv~~~~i~~ 213 (283)
..++...|| |....|..+|++++++++=+ ++. .=..+|+++|+|++.|.=
T Consensus 168 ~~iiam~gP-fs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 223 (248)
T PRK08057 168 AEIIALRGP-FSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIAR 223 (248)
T ss_pred hhEEEeeCC-CCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 345567766 66667788999999887633 222 235789999999998873
No 58
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=52.78 E-value=87 Score=29.52 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEEE
Q psy17032 134 IPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 134 ~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~~ 213 (283)
.+-..+++++|++.+.++|++.+++++ .-++ +.+-|.+.. ++..| .|+|.+.|+.
T Consensus 258 ~d~~~~~~~~l~~~l~~~A~~~~Ip~Q-~~~~-----~~~gtDa~~--~~~~~-----------------~Gi~t~~i~i 312 (343)
T TIGR03106 258 ADSSGPFDYHLTRKLIRLCQDHGIPHR-RDVF-----RYYRSDAAS--AVEAG-----------------HDIRTALVTF 312 (343)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCCCcE-EEec-----CCCCChHHH--HHHcC-----------------CCCCEEEeec
Confidence 344788999999999999999999998 4442 234565442 22222 3899999998
Q ss_pred eeecCCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy17032 214 ATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIV 251 (283)
Q Consensus 214 vsd~a~~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~l 251 (283)
-+-+... -+.++.+++. ++.+|+.+++
T Consensus 313 P~Ry~Hs---~e~~~~~D~~--------~~~~Ll~~~~ 339 (343)
T TIGR03106 313 GLDASHG---YERTHIDALE--------ALANLLVAYA 339 (343)
T ss_pred cccchhh---hhhccHHHHH--------HHHHHHHHHh
Confidence 8777533 2344555442 3446777766
No 59
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=51.27 E-value=69 Score=27.88 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecCc---------hHHHHHHHHc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTL---------VPEVVLAKEA 204 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me~---------aaea~vA~~~ 204 (283)
++..+|-..+.+-+.+.++++|+.+. .. .++...+...+ ++.+.+.++|.+=+.. .+....+...
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~-~~----~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~ 82 (273)
T cd01541 8 YISDYIFPSIIRGIESVLSEKGYSLL-LA----STNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKL 82 (273)
T ss_pred CccchhHHHHHHHHHHHHHHcCCEEE-EE----eCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHC
Confidence 44567788999999999999998776 21 12332222222 2345556676655421 1334556788
Q ss_pred CCcEEEEEE
Q psy17032 205 GLLYAAVAM 213 (283)
Q Consensus 205 gv~~~~i~~ 213 (283)
++|++.+-.
T Consensus 83 ~ipvV~~~~ 91 (273)
T cd01541 83 GIPYVFINA 91 (273)
T ss_pred CCCEEEEec
Confidence 999998754
No 60
>PRK09213 pur operon repressor; Provisional
Probab=49.22 E-value=42 Score=30.73 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHc--CCcEEeeeeEEEecCCcccCHHHH----HHH-HHc---CCc---EEecCchHHHH-HHHHcCCcEE
Q psy17032 144 TRQIIIDSLKEL--GFKFHDKGTAVCIEGPRFSSRAES----NLF-RSW---NAH---LVNMTLVPEVV-LAKEAGLLYA 209 (283)
Q Consensus 144 L~~~~~~~a~~~--g~~~~~~G~~~~~~Gp~fet~aE~----~~~-~~~---Gad---~V~Me~aaea~-vA~~~gv~~~ 209 (283)
-++.+.+.++.+ ...+. .|-|...+ |-+..|.-. +.+ ..+ +.| .+++.+.|.|. +|+++|+|++
T Consensus 80 a~~~~~~L~~~L~~~~ril-pGgf~y~s-dll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~v 157 (271)
T PRK09213 80 AREFVEELCERLSEPDRIL-PGGYLYLS-DLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFV 157 (271)
T ss_pred HHHHHHHHHHHHHhCCccC-CCCeEEeC-cccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEE
Confidence 444444444443 23444 34444444 445555332 222 223 444 46888899988 9999999999
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+|=
T Consensus 158 ivRK 161 (271)
T PRK09213 158 IVRR 161 (271)
T ss_pred EEEE
Confidence 9986
No 61
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=48.46 E-value=82 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=34.4
Q ss_pred cEEEEEE--CCeEEEEEeccCCCcccCCCcc-chH-HHHHHHHHcCCCEEEEecccccCC
Q psy17032 40 VLLQGTI--QGVDCVILARHGRKHTINPSNV-NYR-ANIWALKSVGCTHVIVSTATGSLQ 95 (283)
Q Consensus 40 ~~~~G~~--~G~~Vv~~~r~G~g~~~~~~~V-~~~-a~~~~l~~~Gv~~iI~tg~aG~l~ 95 (283)
+||.-+- .|++++++ .|-.-.++|... .++ +-+..++++|++.||..|+...-.
T Consensus 4 ~~y~~~~~~~~~~illl--~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~ 61 (188)
T TIGR00162 4 EFYAWRSDGNGTDLIIL--VGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGK 61 (188)
T ss_pred eEEEEccCCCCCCEEEE--EcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence 4554432 56789988 675423333212 133 456778999999999999876644
No 62
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=47.81 E-value=1.2e+02 Score=28.30 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcC------------------------CcEEec
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWN------------------------AHLVNM 192 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~G------------------------ad~V~M 192 (283)
+.-++..+.+.+..+++.. .++. +|+.=+=|.++-..-.+.++++| +|+|-=
T Consensus 125 Th~~S~~v~~~l~~A~~~~-k~~~---V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~ 200 (301)
T COG1184 125 THSFSKTVLEVLKTAADRG-KRFK---VIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILA 200 (301)
T ss_pred EecCcHHHHHHHHHhhhcC-CceE---EEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceec
Confidence 3446666776666655542 2222 34333447776554444444444 444433
Q ss_pred C--------chHHHHHHHHcCCcEEEEEE
Q psy17032 193 T--------LVPEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 193 e--------~aaea~vA~~~gv~~~~i~~ 213 (283)
. |.++|.+|+++++||.+++-
T Consensus 201 nG~lvnkiGT~~lA~~A~e~~~Pf~v~ae 229 (301)
T COG1184 201 NGALVNKIGTSPLALAARELRVPFYVVAE 229 (301)
T ss_pred CCcEEeccchHHHHHHHHHhCCCEEEEee
Confidence 3 57899999999999998874
No 63
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.47 E-value=1.1e+02 Score=26.52 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEe----cCchHHHHHHHHcCCcEE
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVN----MTLVPEVVLAKEAGLLYA 209 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~----Me~aaea~vA~~~gv~~~ 209 (283)
+...+|...+.+-+.+.+++.|+.+. +....++. +...+ ++.+.+.++|.+= +........+...++|++
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~----~~~~~~~~-~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV 82 (270)
T cd06296 8 DLDSPWASEVLRGVEEAAAAAGYDVV----LSESGRRT-SPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFV 82 (270)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCeEE----EecCCCch-HHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHhcCCCCEE
Confidence 34567889999999999999988776 11112222 22212 2344445566432 223455666778899999
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+-.
T Consensus 83 ~i~~ 86 (270)
T cd06296 83 VVDP 86 (270)
T ss_pred EEec
Confidence 8854
No 64
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.16 E-value=56 Score=29.40 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=36.9
Q ss_pred eeeEEEecCCcccCHHHHHHHHHcCCcEEecC------chHHHHHHHHcCCcEEEEEE
Q psy17032 162 KGTAVCIEGPRFSSRAESNLFRSWNAHLVNMT------LVPEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 162 ~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me------~aaea~vA~~~gv~~~~i~~ 213 (283)
.+.++...|| |....|..+|++++++++=+- ...=..+|+++|+|++.|.=
T Consensus 171 ~~~iia~~GP-fs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~R 227 (249)
T PF02571_consen 171 PKNIIAMQGP-FSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKR 227 (249)
T ss_pred hhhEEEEeCC-CCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeC
Confidence 3445556766 666677889999999876432 22446789999999998864
No 65
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=44.43 E-value=61 Score=29.02 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEE
Q psy17032 138 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 190 (283)
Q Consensus 138 ~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V 190 (283)
..-+..+.+.+.+.|+++|+++.-+|+ ||..+.+.++++|++.+
T Consensus 188 ~~~~~~iv~~iv~la~~l~~~vvaEGV---------Et~~ql~~L~~~G~~~~ 231 (256)
T COG2200 188 DARDQAIVRAIVALAHKLGLTVVAEGV---------ETEEQLDLLRELGCDYL 231 (256)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEeec---------CCHHHHHHHHHcCCCeE
Confidence 345567889999999999988876666 57888888999998754
No 66
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.30 E-value=96 Score=27.22 Aligned_cols=71 Identities=13% Similarity=0.093 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEecCc------hHHHHHHHHcCC
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTL------VPEVVLAKEAGL 206 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~Me~------aaea~vA~~~gv 206 (283)
+..+|...+.+-+.++++++|+.+. . ..+......+.+ .+...++|.+=+.. .+...-+.+.|+
T Consensus 9 ~~~~f~~~~~~gi~~~~~~~G~~~~-~------~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~i 81 (272)
T cd06313 9 LQATWCAQGKQAADEAGKLLGVDVT-W------YGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGI 81 (272)
T ss_pred cCChHHHHHHHHHHHHHHHcCCEEE-E------ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCC
Confidence 3567888999999999999988776 1 122222222332 33345666554432 123455677899
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 82 PvV~~~~ 88 (272)
T cd06313 82 PVIDMGT 88 (272)
T ss_pred cEEEeCC
Confidence 9998854
No 67
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=43.84 E-value=90 Score=26.79 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCcEEeeeeEEEecC---Cccc-------CHHHH--------HHHHHcCCc---EEecCchHHHH-HH
Q psy17032 144 TRQIIIDSLKELGFKFHDKGTAVCIEG---PRFS-------SRAES--------NLFRSWNAH---LVNMTLVPEVV-LA 201 (283)
Q Consensus 144 L~~~~~~~a~~~g~~~~~~G~~~~~~G---p~fe-------t~aE~--------~~~~~~Gad---~V~Me~aaea~-vA 201 (283)
.++.+.+...+.|. +. .|-+...|| |.|. .|.-. +.++..+.| .++|.+.|.|. +|
T Consensus 15 ~~~~l~~~l~~~ga-~~-~g~F~L~SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA 92 (187)
T PRK13810 15 QKQELIAALKACGA-VR-YGDFTLSSGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVS 92 (187)
T ss_pred HHHHHHHHHHHCCC-eE-ecCEEEcCCCcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHH
Confidence 45555556666554 44 566655665 5543 22211 112222433 46788888887 89
Q ss_pred HHcCCcEEEEEEe
Q psy17032 202 KEAGLLYAAVAMA 214 (283)
Q Consensus 202 ~~~gv~~~~i~~v 214 (283)
.++|+|++.+|=-
T Consensus 93 ~~l~~p~v~vRK~ 105 (187)
T PRK13810 93 LETGLPLLIVRKS 105 (187)
T ss_pred HHhCCCEEEEecC
Confidence 9999999999874
No 68
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=43.28 E-value=1.2e+02 Score=26.13 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHH---HHHcCCcEEecCc----hHHHHHHHHcCCc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNMTL----VPEVVLAKEAGLL 207 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~---~~~~Gad~V~Me~----aaea~vA~~~gv~ 207 (283)
....+|-.++.+-+.+.|+++|+.+. . ..+ .+....+.+. +.+.++|.+=... .+....+...|+|
T Consensus 8 ~~~~~~~~~~~~g~~~~a~~~g~~~~-~-----~~~-~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~~~ip 80 (268)
T cd06270 8 DLDGPFFGPLLSGVESVARKAGKHLI-I-----TAG-HHSAEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPP 80 (268)
T ss_pred cccCcchHHHHHHHHHHHHHCCCEEE-E-----EeC-CCchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhCCCC
Confidence 34467778999999999999998776 1 122 2333334333 3344555444322 2335667788999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 81 vV~~~~ 86 (268)
T cd06270 81 LVLINR 86 (268)
T ss_pred EEEEec
Confidence 998854
No 69
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.24 E-value=1.2e+02 Score=26.18 Aligned_cols=74 Identities=9% Similarity=-0.024 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc-----hHHHHHHHHcCC
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL-----VPEVVLAKEAGL 206 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~-----aaea~vA~~~gv 206 (283)
++..+|..++.+-+.+.+++.|..+. + ..+ ......+. +.+.+.++|.+=+.. .+....+++.++
T Consensus 8 ~~~~~~~~~~~~~i~~~a~~~g~~~~----~-~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~i 80 (269)
T cd06281 8 DITNPLLAQLFSGAEDRLRAAGYSLL----I-ANS--LNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDL 80 (269)
T ss_pred CCccccHHHHHHHHHHHHHHcCCEEE----E-EeC--CCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCC
Confidence 34467889999999999999987765 1 112 22222232 334445566444332 233446678899
Q ss_pred cEEEEEEee
Q psy17032 207 LYAAVAMAT 215 (283)
Q Consensus 207 ~~~~i~~vs 215 (283)
|++.+-.-.
T Consensus 81 pvV~i~~~~ 89 (269)
T cd06281 81 PIVLLDRDM 89 (269)
T ss_pred CEEEEeccc
Confidence 999886543
No 70
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=41.25 E-value=41 Score=30.71 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.8
Q ss_pred EEecCchHHHH-HHHHcCCcEEEEEEe
Q psy17032 189 LVNMTLVPEVV-LAKEAGLLYAAVAMA 214 (283)
Q Consensus 189 ~V~Me~aaea~-vA~~~gv~~~~i~~v 214 (283)
.+++.+.|.|. +|+++|+|++.+|=-
T Consensus 134 gvetkGIpLA~avA~~L~vp~vivRK~ 160 (268)
T TIGR01743 134 TVATKGIPLAYAVASVLNVPLVIVRKD 160 (268)
T ss_pred EEccchHHHHHHHHHHHCCCEEEEEEC
Confidence 46888999998 999999999999864
No 71
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.02 E-value=1.4e+02 Score=25.83 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHH---HHHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~---~~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|-..+++-+.+.+++.|+.+. + .+ ..+....+.+. +.+.++|.+=+.. .+....+++.|+|
T Consensus 11 ~~~~~~~~~~g~~~~~~~~g~~~~----~--~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iP 83 (275)
T cd06317 11 SHSYQTTYNKAFQAAAEEDGVEVI----V--LD-ANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIP 83 (275)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEE----E--Ec-CCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCc
Confidence 456778899999999999887765 1 12 22333334333 3345677553322 2444667889999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 84 vV~~~ 88 (275)
T cd06317 84 VVITN 88 (275)
T ss_pred EEEeC
Confidence 98553
No 72
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=37.77 E-value=1.7e+02 Score=25.21 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC----chHHHHHHHHcCCcEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT----LVPEVVLAKEAGLLYA 209 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me----~aaea~vA~~~gv~~~ 209 (283)
..+|-..+..-+.+.+++.|..+. + .+ +......+. +.+.+.++|++=+. .......+++.|+|++
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~----~--~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv 82 (268)
T cd06273 10 DNAIFARVIQAFQETLAAHGYTLL----V--AS-SGYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYV 82 (268)
T ss_pred CCchHHHHHHHHHHHHHHCCCEEE----E--ec-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEE
Confidence 455668888889999999887665 1 12 222222232 33444466654332 3345567778899999
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+-.
T Consensus 83 ~~~~ 86 (268)
T cd06273 83 ATWN 86 (268)
T ss_pred EEcC
Confidence 8743
No 73
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=37.63 E-value=26 Score=24.75 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEE
Q psy17032 141 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 190 (283)
Q Consensus 141 d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V 190 (283)
+......++..|++.|.++...|++-..+|....+..|.+.++.+|-.-+
T Consensus 8 s~~fnr~lR~~A~~~g~~L~~~Gl~~~~~~~~~~~~~E~dif~~Lgl~yi 57 (64)
T PF14791_consen 8 SKEFNRDLRQYAKKKGMKLSEYGLFKRETGELVPVESEEDIFDALGLPYI 57 (64)
T ss_dssp -HHHHHHHHHHHHHTTEEEESSEEEETTCEEEEE-SSHHHHHHHTTS---
T ss_pred CHHHHHHHHHHHHHcCCeeCcccccccccceeecCCCHHHHHHHcCCCCC
Confidence 35566777788888899998778885445666677778888888875433
No 74
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.41 E-value=2e+02 Score=24.51 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEec-----CchHHHHHHHHcCCc
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNM-----TLVPEVVLAKEAGLL 207 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~M-----e~aaea~vA~~~gv~ 207 (283)
+..+|...+.+-++++++++|+++. . ..+. .....+.+ .+.+.++|++=. +.......+...|+|
T Consensus 9 ~~~~~~~~~~~g~~~~a~~~g~~~~-~-----~~~~-~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ip 81 (268)
T cd06289 9 LTNPFFAELAAGLEEVLEEAGYTVF-L-----ANSG-EDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIP 81 (268)
T ss_pred CCcchHHHHHHHHHHHHHHcCCeEE-E-----ecCC-CChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCC
Confidence 3456778899999999999987765 1 1211 11222333 343445554322 122344567889999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 82 vV~~~~ 87 (268)
T cd06289 82 VVLVAR 87 (268)
T ss_pred EEEEec
Confidence 998743
No 75
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=37.41 E-value=1.4e+02 Score=25.91 Aligned_cols=73 Identities=8% Similarity=-0.063 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HH-HHHHcCCc---EEecC-chHHHHHHHHcCCcE
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SN-LFRSWNAH---LVNMT-LVPEVVLAKEAGLLY 208 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~-~~~~~Gad---~V~Me-~aaea~vA~~~gv~~ 208 (283)
++..+|..++.+-+.+++++.|..+. + ...+.=+...+ .+ .+....+| +.... ..+....+++.|+|+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~gy~~~----~--~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~l~~~~iPv 81 (269)
T cd06297 8 VVATEFYRRLLEGIEGALLEQRYDLA----L--FPLLSLARLKRYLESTTLAYLTDGLLLASYDLTERLAERRLPTERPV 81 (269)
T ss_pred CCcChhHHHHHHHHHHHHHHCCCEEE----E--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccChHHHHHHhhcCCCE
Confidence 34567889999999999999987766 1 12221111111 22 34443333 32222 334456677889999
Q ss_pred EEEEE
Q psy17032 209 AAVAM 213 (283)
Q Consensus 209 ~~i~~ 213 (283)
+.+-.
T Consensus 82 v~~~~ 86 (269)
T cd06297 82 VLVDA 86 (269)
T ss_pred EEEcc
Confidence 98854
No 76
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=37.37 E-value=1.7e+02 Score=25.36 Aligned_cols=71 Identities=18% Similarity=0.170 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHH-HH---HHHHHcCCcEEecCc------hHHHHHHHHcC
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRA-ES---NLFRSWNAHLVNMTL------VPEVVLAKEAG 205 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~a-E~---~~~~~~Gad~V~Me~------aaea~vA~~~g 205 (283)
+..+|-..+.+-+.+++++.|+.+. + ...+...++. +. +.+...++|++=... .+....+++.|
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~g~~~~----~--~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~ 82 (275)
T cd06320 9 LSNEFWRSLKEGYENEAKKLGVSVD----I--QAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKG 82 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCeEE----E--EccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCC
Confidence 3456677889999999999887765 1 2223333332 22 234444666432221 23456677889
Q ss_pred CcEEEEE
Q psy17032 206 LLYAAVA 212 (283)
Q Consensus 206 v~~~~i~ 212 (283)
+|++.+-
T Consensus 83 iPvV~~~ 89 (275)
T cd06320 83 IPVVNVN 89 (275)
T ss_pred CeEEEEC
Confidence 9999764
No 77
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.89 E-value=3.4 Score=36.68 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCEEEE-eccc
Q psy17032 73 NIWALKSVGCTHVIV-STAT 91 (283)
Q Consensus 73 ~~~~l~~~Gv~~iI~-tg~a 91 (283)
....|.+.|++.|+. +|++
T Consensus 67 ~a~~Le~~GAd~i~l~~NT~ 86 (230)
T COG1794 67 AAKKLERAGADFIVLPTNTM 86 (230)
T ss_pred HHHHHHhcCCCEEEEeCCcH
Confidence 467889999998754 3443
No 78
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=35.60 E-value=31 Score=25.10 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHHHH-HHHHcCCcEEe--cCchHHHHHHHHcCCcEEE
Q psy17032 176 RAESN-LFRSWNAHLVN--MTLVPEVVLAKEAGLLYAA 210 (283)
Q Consensus 176 ~aE~~-~~~~~Gad~V~--Me~aaea~vA~~~gv~~~~ 210 (283)
|++.. .+.+..+.+++ -.+.+.+++||++|+|++.
T Consensus 21 p~~~~~~~~~~~Giv~~~Gg~~SH~aIlAr~~giP~iv 58 (80)
T PF00391_consen 21 PSDLALDLQRVAGIVTEEGGPTSHAAILARELGIPAIV 58 (80)
T ss_dssp TTCHHSHHTTSSEEEESSSSTTSHHHHHHHHTT-EEEE
T ss_pred HHHHhcchhheEEEEEEcCCccchHHHHHHHcCCCEEE
Confidence 33444 33444444443 3467899999999999974
No 79
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.27 E-value=57 Score=28.62 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec---Cch-H--HHHHHHHcC-CcEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM---TLV-P--EVVLAKEAG-LLYA 209 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M---e~a-a--ea~vA~~~g-v~~~ 209 (283)
++.+++++.+ .+++.|+.+. -|+. |+.|.....++|+|.|.. +.. + +-.+...+. +|++
T Consensus 94 sP~~~~~v~~----~~~~~~i~~i-PG~~---------T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~ 159 (213)
T PRK06552 94 SPSFNRETAK----ICNLYQIPYL-PGCM---------TVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVM 159 (213)
T ss_pred CCCCCHHHHH----HHHHcCCCEE-CCcC---------CHHHHHHHHHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEE
Confidence 4566776665 4667788888 4553 788887766799999887 211 1 222333343 6766
Q ss_pred EEEEee
Q psy17032 210 AVAMAT 215 (283)
Q Consensus 210 ~i~~vs 215 (283)
++.-|+
T Consensus 160 atGGI~ 165 (213)
T PRK06552 160 VTGGVN 165 (213)
T ss_pred EECCCC
Confidence 665553
No 80
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=35.24 E-value=2e+02 Score=24.83 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHH---HHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLF---RSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~---~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|-..+.+-+.+++++.|+.+. . .. ..+....+.+.+ -+.+.|.+=... .+....+++.|+|
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~-----~~-~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ip 82 (273)
T cd06305 10 SGDFDQAYLAGTKAEAEALGGDLR-V-----YD-AGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIP 82 (273)
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEE-E-----EC-CCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCC
Confidence 345667889999999999998776 1 12 233433333333 234666543321 2334567889999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 83 vV~~~~ 88 (273)
T cd06305 83 VVAFDV 88 (273)
T ss_pred EEEecC
Confidence 887743
No 81
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=35.16 E-value=2.7e+02 Score=25.32 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=20.2
Q ss_pred HHHHHHcCCCEEEEecccccCCCCCCCC
Q psy17032 74 IWALKSVGCTHVIVSTATGSLQEEIQPG 101 (283)
Q Consensus 74 ~~~l~~~Gv~~iI~tg~aG~l~~~l~~G 101 (283)
.+.+.+.|++.|..+|+..+...+++.+
T Consensus 175 a~~l~~~G~d~i~~~nt~~g~~~~~~~~ 202 (301)
T PRK07259 175 AKAAEEAGADGLSLINTLKGMAIDIKTR 202 (301)
T ss_pred HHHHHHcCCCEEEEEccccccccccccC
Confidence 5678889999999888876665444433
No 82
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=35.05 E-value=2.4e+02 Score=25.94 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=50.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCchHHHHHHHHcCCcEEEEE
Q psy17032 133 HIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 133 ~~~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~aaea~vA~~~gv~~~~i~ 212 (283)
+.+-...++++|++.++++|++.+++++ .-++ +.+-|. ...++..+ .|+|.+.|+
T Consensus 214 ~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q-~~~~-----~~ggTD--a~~~~~~~-----------------~Gi~t~~i~ 268 (292)
T PF05343_consen 214 VGDSSMIPNPKLVDKLREIAEENGIPYQ-REVF-----SGGGTD--AGAIQLSG-----------------GGIPTAVIS 268 (292)
T ss_dssp EEETTEESHHHHHHHHHHHHHHTT--EE-EEEE-----SSSSST--HHHHHTST-----------------TSSEEEEEE
T ss_pred EccCCCCCCHHHHHHHHHHHHHcCCCeE-EEec-----CCcccH--HHHHHHcC-----------------CCCCEEEEe
Confidence 3444578999999999999999999998 3332 233343 33344443 489999999
Q ss_pred EeeecCCCcCCCCccCHHHHHHH
Q psy17032 213 MATDYDCWRDTGNKVCVADVLKT 235 (283)
Q Consensus 213 ~vsd~a~~~~~~~~~~~~e~~~~ 235 (283)
.=.-+.... .+.++.+++...
T Consensus 269 iP~ry~Hs~--~e~~~~~Di~~~ 289 (292)
T PF05343_consen 269 IPCRYMHSP--VEVIDLDDIEAT 289 (292)
T ss_dssp EEEBSTTST--TEEEEHHHHHHH
T ss_pred cccccCCCc--ceEEEHHHHHHH
Confidence 988886542 456677776543
No 83
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.87 E-value=2.3e+02 Score=24.58 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|-..+.+-+.+++++.|+.+. + ...+.+....+.+ .+...++|++=... .+....+++.|+|
T Consensus 11 ~~~~~~~~~~g~~~~~~~~g~~v~----~--~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ip 84 (271)
T cd06312 11 GDPFWTVVKNGAEDAAKDLGVDVE----Y--RGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIP 84 (271)
T ss_pred CCcHHHHHHHHHHHHHHHhCCEEE----E--ECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCe
Confidence 356778899999999999887776 1 1222223233333 34345666444322 1334567788999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 85 vV~~~ 89 (271)
T cd06312 85 VISFN 89 (271)
T ss_pred EEEeC
Confidence 98874
No 84
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=1.9e+02 Score=27.40 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCcEEeeeeEEEecCCcccCHH-----HHHHHHHcCCcEEecCchHHHHHHHHcC--CcEEE
Q psy17032 145 RQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRA-----ESNLFRSWNAHLVNMTLVPEVVLAKEAG--LLYAA 210 (283)
Q Consensus 145 ~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~a-----E~~~~~~~Gad~V~Me~aaea~vA~~~g--v~~~~ 210 (283)
.+.+.+.|.+.|.++... +..--+...- ..+.+.+.|+|+|.+.--....++++.+ +|+-+
T Consensus 51 l~e~i~~ah~~gkk~~V~-----~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 51 LAEAVELAHSAGKKVYVA-----VNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHV 118 (347)
T ss_pred HHHHHHHHHHcCCeEEEE-----eccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCcEEE
Confidence 555667778888766511 2222222222 2355677899999999999999999999 88653
No 85
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.21 E-value=1.3e+02 Score=26.57 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecCc------hHHHHHHHHcCCcE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTL------VPEVVLAKEAGLLY 208 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me~------aaea~vA~~~gv~~ 208 (283)
+..+|-..+.+-+.+++++.|+.+. . + .+...-++..+ ++.+.+.++|.+=... .+....++..|+|+
T Consensus 9 ~~~~~~~~~~~gi~~~a~~~g~~~~-~--~--~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipv 83 (288)
T cd01538 9 KTEERWIRDRPNFEAALKELGAEVI-V--Q--NANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPV 83 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHcCCEEE-E--E--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCE
Confidence 3456778899999999999998877 1 1 11111111112 2334344555333221 23445677889999
Q ss_pred EEEE
Q psy17032 209 AAVA 212 (283)
Q Consensus 209 ~~i~ 212 (283)
+.+-
T Consensus 84 V~~~ 87 (288)
T cd01538 84 IAYD 87 (288)
T ss_pred EEEC
Confidence 9874
No 86
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.65 E-value=2.2e+02 Score=24.27 Aligned_cols=70 Identities=10% Similarity=0.149 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCc--EEe-cC--chHHHHHHHHcCCc
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAH--LVN-MT--LVPEVVLAKEAGLL 207 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad--~V~-Me--~aaea~vA~~~gv~ 207 (283)
+..+|-..+.+-+.+++++.|+.+. . .. +.+....+. +.+...+.| ++. .. ..+....+.+.|+|
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~g~~~~-~-----~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ip 81 (266)
T cd06282 9 LANPVFAECVQGIQEEARAAGYSLL-L-----AT-TDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVP 81 (266)
T ss_pred CCcchHHHHHHHHHHHHHHCCCEEE-E-----ee-CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCC
Confidence 3456667889999999999988776 1 11 123333332 233333444 332 22 22345677889999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 82 vV~~~ 86 (266)
T cd06282 82 YVLAY 86 (266)
T ss_pred EEEEe
Confidence 88874
No 87
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.48 E-value=33 Score=29.84 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM 192 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M 192 (283)
++-+|+++. +.|++.++.+. -|+. ||.|+....++|++.|--
T Consensus 86 SP~~~~~v~----~~~~~~~i~~i-PG~~---------TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 86 SPGFDPEVI----EYAREYGIPYI-PGVM---------TPTEIMQALEAGADIVKL 127 (196)
T ss_dssp ESS--HHHH----HHHHHHTSEEE-EEES---------SHHHHHHHHHTT-SEEEE
T ss_pred CCCCCHHHH----HHHHHcCCccc-CCcC---------CHHHHHHHHHCCCCEEEE
Confidence 344566555 55667788888 5764 799998888899998853
No 88
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.39 E-value=2.2e+02 Score=24.97 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc------hHHHHHHHHcCC
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL------VPEVVLAKEAGL 206 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~------aaea~vA~~~gv 206 (283)
+..+|...+.+-+.+.++++|..+. + ..+. .....|. +.+.+.+.|.+=... .+....+++.++
T Consensus 10 ~~~~~~~~~~~gi~~~a~~~gy~~~----~--~~~~-~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~i 82 (280)
T cd06315 10 LKNGGILGVGEGVREAAKAIGWNLR----I--LDGR-GSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGI 82 (280)
T ss_pred cCCcHHHHHHHHHHHHHHHcCcEEE----E--ECCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCC
Confidence 4567888999999999999987664 1 1221 2222232 334444555333321 234456778899
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 83 PvV~~d~ 89 (280)
T cd06315 83 PVVGWHA 89 (280)
T ss_pred CEEEecC
Confidence 9998854
No 89
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.17 E-value=2.3e+02 Score=24.11 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecC----chHHHHHHHHcCCcEEE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMT----LVPEVVLAKEAGLLYAA 210 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me----~aaea~vA~~~gv~~~~ 210 (283)
+..+|-..+.+.+.+.+++.|+.+. + ...+......+ ++.+.+.++|.+=.. .......+.+.|+|++.
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~g~~~~----~--~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~ 82 (266)
T cd06278 9 LDNPFYSELLEALSRALQARGYQPL----L--INTDDDEDLDAALRQLLQYRVDGVIVTSGTLSSELAEECRRNGIPVVL 82 (266)
T ss_pred CCCchHHHHHHHHHHHHHHCCCeEE----E--EcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhcCCCEEE
Confidence 3456778888889999999987765 2 22232221122 233444555533332 23345567788999988
Q ss_pred EEE
Q psy17032 211 VAM 213 (283)
Q Consensus 211 i~~ 213 (283)
+-.
T Consensus 83 ~~~ 85 (266)
T cd06278 83 INR 85 (266)
T ss_pred ECC
Confidence 843
No 90
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=32.08 E-value=2.1e+02 Score=25.68 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEecCc------hHHHHHHHHcCCcEE
Q psy17032 139 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTL------VPEVVLAKEAGLLYA 209 (283)
Q Consensus 139 ~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~Me~------aaea~vA~~~gv~~~ 209 (283)
+|=..+++.+++.|++.|+.+. . .+ ..+....+.+ .+...++|.+=+.. .+....+.+.|+|++
T Consensus 11 ~~~~~~~~~i~~~a~~~g~~v~-~-----~~-~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV 83 (302)
T TIGR02634 11 ERWQKDRDIFVAAAESLGAKVF-V-----QS-ANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVV 83 (302)
T ss_pred hhHHHHHHHHHHHHHhcCCEEE-E-----Ee-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEE
Confidence 3445788899999999987775 1 11 2222233333 33444666555543 245566788999999
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+-.
T Consensus 84 ~~d~ 87 (302)
T TIGR02634 84 AYDR 87 (302)
T ss_pred EecC
Confidence 8744
No 91
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=31.87 E-value=46 Score=30.04 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=22.5
Q ss_pred cCCcEEecCc--------hHHHHHHHHcCCcEEEEEEe
Q psy17032 185 WNAHLVNMTL--------VPEVVLAKEAGLLYAAVAMA 214 (283)
Q Consensus 185 ~Gad~V~Me~--------aaea~vA~~~gv~~~~i~~v 214 (283)
+|||+|-..+ .++|.+|+++++||.+++--
T Consensus 182 iGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 182 IGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp EE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--G
T ss_pred EeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccc
Confidence 4888887776 79999999999999998754
No 92
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.69 E-value=2.5e+02 Score=24.53 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecC----chHHHHHHHHcCCcEEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMT----LVPEVVLAKEAGLLYAAV 211 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me----~aaea~vA~~~gv~~~~i 211 (283)
..+|-..+++-+.+.+++.|+.+. + ...+. ..+ .+.+...++|.+=.. ..+....++..|+|++.+
T Consensus 15 ~~~~~~~~~~gi~~~a~~~g~~~~----~--~~~~~---~~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 15 SDPVASQFLAGVAEVLDAAGVNLL----L--LPASS---EDSDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred cCccHHHHHHHHHHHHHHCCCEEE----E--ecCcc---HHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 356778999999999999987776 1 22222 122 234455555543332 235556778899999877
Q ss_pred EE
Q psy17032 212 AM 213 (283)
Q Consensus 212 ~~ 213 (283)
-.
T Consensus 86 ~~ 87 (283)
T cd06279 86 DQ 87 (283)
T ss_pred ec
Confidence 43
No 93
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.62 E-value=37 Score=29.64 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEecCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 194 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~Me~ 194 (283)
++.+|+++.+ .|++.++.+. -|.. ||.|+....++|++.|=.=-
T Consensus 82 SP~~~~~vi~----~a~~~~i~~i-PG~~---------TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 82 SPGTTQELLA----AANDSDVPLL-PGAA---------TPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred CCCCCHHHHH----HHHHcCCCEe-CCCC---------CHHHHHHHHHCCCCEEEECC
Confidence 4556666665 5666788887 5653 78998887788988876543
No 94
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=31.31 E-value=31 Score=32.75 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.6
Q ss_pred CCCCCceEEEEeCCCCCC
Q psy17032 1 MSVSKIKIGFIGGSGLNN 18 (283)
Q Consensus 1 ~~~~~~~igIIggsgl~~ 18 (283)
||..+++|||||+||+-.
T Consensus 1 ~~~~~~~VaIvGATG~vG 18 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVG 18 (347)
T ss_pred CCCCCCEEEEEeCCCHHH
Confidence 788889999999999654
No 95
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=31.17 E-value=1.6e+02 Score=25.36 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCch-HHHHHHHHcCCcEEEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV-PEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~a-aea~vA~~~gv~~~~i~ 212 (283)
..+|-..+.+-+.+++++.|..+. . ...+ .....+. +.+...++|++=.... +...-+.+.|+|++.+-
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~-----~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~gipvv~~~ 82 (265)
T cd06291 10 SNPFFSELARAVEKELYKKGYKLI-L-----CNSD-NDPEKEREYLEMLRQNQVDGIIAGTHNLGIEEYENIDLPIVSFD 82 (265)
T ss_pred CChhHHHHHHHHHHHHHHCCCeEE-E-----ecCC-ccHHHHHHHHHHHHHcCCCEEEEecCCcCHHHHhcCCCCEEEEe
Confidence 456778899999999999987765 1 1222 1112222 3344456665443332 23345567899998776
Q ss_pred E
Q psy17032 213 M 213 (283)
Q Consensus 213 ~ 213 (283)
.
T Consensus 83 ~ 83 (265)
T cd06291 83 R 83 (265)
T ss_pred C
Confidence 4
No 96
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=31.07 E-value=1.2e+02 Score=26.11 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=36.6
Q ss_pred cccEEEEEECCeEEEEEeccCCCcccCCCcc-chH-HHHHHHHHcCCCEEEEecccccCCCCCCC
Q psy17032 38 SDVLLQGTIQGVDCVILARHGRKHTINPSNV-NYR-ANIWALKSVGCTHVIVSTATGSLQEEIQP 100 (283)
Q Consensus 38 ~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V-~~~-a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~ 100 (283)
..++|.++-.+ ++++ +|+. ..++... .++ +-+..++++|++.||..++..+..+.=++
T Consensus 58 ~~~iy~~~~~~--i~vl--~~~~-p~~~~~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~~~ 117 (219)
T PF09754_consen 58 PLEIYYSEDSK--ILVL--QGRS-PIPPGRWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPHERP 117 (219)
T ss_dssp SEEEEEEECTT--EEEE--EESS-E--SCGHHHHHHHHHHHHHHTTECEEEEEEEEEESS-TTS-
T ss_pred ceEEEEECCCC--EEEE--EecC-CCCchHHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCcccc
Confidence 34677666544 7777 5655 2222222 244 45678899999999999999988877444
No 97
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=30.77 E-value=2.7e+02 Score=23.75 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC----chHHHHHHHHcCCcEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT----LVPEVVLAKEAGLLYA 209 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me----~aaea~vA~~~gv~~~ 209 (283)
..+|-.++.+-+.+++++.|+.+. + ... .+....+. +.+.+.++|.+=.. ..+...-+.+.|+|++
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~----~--~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV 82 (265)
T cd06299 10 RNPYFASLATAIQDAASAAGYSTI----I--GNS-DENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVV 82 (265)
T ss_pred CCccHHHHHHHHHHHHHHcCCEEE----E--EeC-CCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHhCCCCEE
Confidence 345667899999999999988776 1 111 12222232 33444455433221 3345667778899998
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+-.
T Consensus 83 ~~~~ 86 (265)
T cd06299 83 FVDR 86 (265)
T ss_pred EEec
Confidence 7754
No 98
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=30.38 E-value=2.5e+02 Score=26.09 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HH---HHHHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 138 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SN---LFRSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 138 ~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~---~~~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
.+|-..+.+-++++++++|+.+. +.+|.-.+.++ .+ .+.+.|+|++=... .+...-|++.|+|
T Consensus 35 ~pf~~~~~~Gi~~aa~~~G~~v~-------~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIp 107 (336)
T PRK15408 35 VGFFTSGGNGAKEAGKELGVDVT-------YDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVK 107 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCEEE-------EECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCe
Confidence 34556788889999999887665 23444333332 22 33344666555543 4666778999999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 108 VV~~d~ 113 (336)
T PRK15408 108 VLTWDS 113 (336)
T ss_pred EEEeCC
Confidence 998753
No 99
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=30.02 E-value=2.7e+02 Score=23.90 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEecCch----HHHHHHHHcCCcE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV----PEVVLAKEAGLLY 208 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~Me~a----aea~vA~~~gv~~ 208 (283)
+..+|-.++.+.+.+.+++.|..+. - ....+ ....+.+ .+...++|++-.... .....++..|+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~~~-~---~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipv 81 (264)
T cd06274 9 LENRSFARIAKRLEALARERGYQLL-I---ACSDD---DPETERETVETLIARQVDALIVAGSLPPDDPYYLCQKAGLPV 81 (264)
T ss_pred ccCchHHHHHHHHHHHHHHCCCEEE-E---EeCCC---CHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCE
Confidence 3456778899999999999887765 1 11111 2223333 344567775543322 2244567789999
Q ss_pred EEEEE
Q psy17032 209 AAVAM 213 (283)
Q Consensus 209 ~~i~~ 213 (283)
+.+-.
T Consensus 82 V~~~~ 86 (264)
T cd06274 82 VALDR 86 (264)
T ss_pred EEecC
Confidence 88844
No 100
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.86 E-value=2.3e+02 Score=24.29 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc------hHHHHHHHHcC
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL------VPEVVLAKEAG 205 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~------aaea~vA~~~g 205 (283)
+...+|-.++.+-+.+.+++.|+.+. - ..+ ......+. +.+.+.++|.+=... .+....+++.|
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~-i-----~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKKQKVNLI-V-----SIA-NQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAG 80 (267)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCEEE-E-----ecC-CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCC
Confidence 33456778899999999999887765 1 111 12222232 233445666554422 22345667889
Q ss_pred CcEEEEEE
Q psy17032 206 LLYAAVAM 213 (283)
Q Consensus 206 v~~~~i~~ 213 (283)
+|++.+-.
T Consensus 81 ipvV~~~~ 88 (267)
T cd06322 81 IPVITVDI 88 (267)
T ss_pred CCEEEEcc
Confidence 99998843
No 101
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.27 E-value=73 Score=26.02 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=34.2
Q ss_pred EECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEec
Q psy17032 45 TIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILD 107 (283)
Q Consensus 45 ~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~ 107 (283)
.++|++|+++ |+.. +.-.....+|..-|++..+.--..-.++..++--|+||.-
T Consensus 25 ~~~gk~v~Vv---Grs~------~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsA 78 (140)
T cd05212 25 RLDGKKVLVV---GRSG------IVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCCCEEEEE---CCCc------hHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEe
Confidence 5789999998 6643 2222234566667777666543333566667888888863
No 102
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.92 E-value=1.4e+02 Score=24.37 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecCc--------hHH-HHHHHHcCCcE
Q psy17032 146 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTL--------VPE-VVLAKEAGLLY 208 (283)
Q Consensus 146 ~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me~--------aae-a~vA~~~gv~~ 208 (283)
..+...++..|+++.+-|+ +.++++. +..++.++|+|+||+ .++ ....++.|+.-
T Consensus 19 ~iv~~~l~~~GfeVi~LG~--------~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGV--------LSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred HHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC
Confidence 3444566778888884443 4456664 667778999999887 222 33677777743
No 103
>PRK06186 hypothetical protein; Validated
Probab=28.89 E-value=2.3e+02 Score=25.27 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEE-------ecCch-HHHHHHHHcCCcEEEEEE
Q psy17032 142 NSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV-------NMTLV-PEVVLAKEAGLLYAAVAM 213 (283)
Q Consensus 142 ~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V-------~Me~a-aea~vA~~~gv~~~~i~~ 213 (283)
..+.+.++.++..++.++. +.+++....+.. ..++.+.+.+| |.|+. ..+.-||++++||++||.
T Consensus 18 ~Sv~eal~ha~~~~~~~~~----i~wi~s~~l~~~---~~l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGICl 90 (229)
T PRK06186 18 QAIPLALDLAAAVLGLPVD----YEWLPTPEITDP---EDLAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCG 90 (229)
T ss_pred HHHHHHHHHHHHhcCCeeE----EEEEchhhcCCh---hhHhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeech
Confidence 4578888888888888776 334676666543 23554422211 34443 345689999999999985
No 104
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.52 E-value=3.2e+02 Score=23.56 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHc---CCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC-c-----hHHHHHHH
Q psy17032 135 PMEPAFDNSTRQIIIDSLKEL---GFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT-L-----VPEVVLAK 202 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~---g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me-~-----aaea~vA~ 202 (283)
++..+|-..+.+-+.++++++ |.++. ++ ..+.. .....+. +.+...++|.+=.. . .+....++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~g~~~~---l~-i~~~~-~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~ 82 (272)
T cd06300 8 YAGNTWRAQMLDEFKAQAKELKKAGLISE---FI-VTSAD-GDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEAC 82 (272)
T ss_pred ccCChHHHHHHHHHHHHHHhhhccCCeeE---EE-EecCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 445678888999999999988 76432 11 12222 1111122 23333344433221 1 22456778
Q ss_pred HcCCcEEEEEE
Q psy17032 203 EAGLLYAAVAM 213 (283)
Q Consensus 203 ~~gv~~~~i~~ 213 (283)
+.|+|++.+-.
T Consensus 83 ~~~iPvv~~~~ 93 (272)
T cd06300 83 EAGIPVVSFDG 93 (272)
T ss_pred HCCCeEEEEec
Confidence 89999998853
No 105
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=28.29 E-value=2.8e+02 Score=23.60 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC----chHHHHHHHHcCCcE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT----LVPEVVLAKEAGLLY 208 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me----~aaea~vA~~~gv~~ 208 (283)
+..+|-..+.+-+.++++++|+.+. . ... .+....+. +.+.+.++|.+=+. .......+...|+|+
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~g~~~~-~-----~~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipv 81 (268)
T cd01575 9 LSNSVFADVLQGISDVLEAAGYQLL-L-----GNT-GYSPEREEELLRTLLSRRPAGLILTGLEHTERTRQLLRAAGIPV 81 (268)
T ss_pred CcchhHHHHHHHHHHHHHHcCCEEE-E-----ecC-CCCchhHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhcCCCE
Confidence 3456678888999999999987765 2 111 12222222 33434455644332 224455677889999
Q ss_pred EEEE
Q psy17032 209 AAVA 212 (283)
Q Consensus 209 ~~i~ 212 (283)
+.+.
T Consensus 82 v~~~ 85 (268)
T cd01575 82 VEIM 85 (268)
T ss_pred EEEe
Confidence 9884
No 106
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=28.03 E-value=4.2e+02 Score=23.96 Aligned_cols=24 Identities=8% Similarity=0.125 Sum_probs=18.6
Q ss_pred HHHHHHcCCCEEEEecccccCCCC
Q psy17032 74 IWALKSVGCTHVIVSTATGSLQEE 97 (283)
Q Consensus 74 ~~~l~~~Gv~~iI~tg~aG~l~~~ 97 (283)
...+.+.|++.|..+|+..+...+
T Consensus 175 a~~l~~~G~d~i~v~nt~~~~~~~ 198 (300)
T TIGR01037 175 AKAAEEAGADGLTLINTLRGMKID 198 (300)
T ss_pred HHHHHHcCCCEEEEEccCCccccc
Confidence 567889999999998887665443
No 107
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=27.89 E-value=3.2e+02 Score=23.30 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecCc----hHHHHHHHHcCCcEEE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTL----VPEVVLAKEAGLLYAA 210 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me~----aaea~vA~~~gv~~~~ 210 (283)
+..+|-.++..-+.+++++.|+.+. -. .+. ...+ .+.+...++|.+=+.. .+.....++.|+|++.
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~g~~~~-~~----~~~----~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~ 79 (261)
T cd06272 9 VSRVALTELVTGINQAISKNGYNMN-VS----ITP----SLAEAEDLFKENRFDGVIIFGESASDVEYLYKIKLAIPVVS 79 (261)
T ss_pred CCchhHHHHHHHHHHHHHHcCCEEE-EE----ecc----cHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHHHcCCCEEE
Confidence 3456778999999999999987765 11 121 1222 3455655666443322 1223456788999987
Q ss_pred EEE
Q psy17032 211 VAM 213 (283)
Q Consensus 211 i~~ 213 (283)
+-.
T Consensus 80 ~~~ 82 (261)
T cd06272 80 YGV 82 (261)
T ss_pred Ecc
Confidence 744
No 108
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.85 E-value=2.8e+02 Score=24.77 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH---HHHHHHc--CCcEEecCc-----hHHHHHHHHcCC
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSW--NAHLVNMTL-----VPEVVLAKEAGL 206 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE---~~~~~~~--Gad~V~Me~-----aaea~vA~~~gv 206 (283)
..+|-..+.+-+++++++.|..+. - .. .......+ ++.+.+. ++|.+=... ......++..|+
T Consensus 11 ~~~~~~~~~~gi~~~~~~~g~~v~-~-----~~-~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~gi 83 (305)
T cd06324 11 DEPFWNSVARFMQAAADDLGIELE-V-----LY-AERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGV 83 (305)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEE-E-----Ee-CCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCC
Confidence 456677889999999999887765 1 11 12232223 2344445 666544422 233566788999
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 84 PvV~~~~ 90 (305)
T cd06324 84 KLFLVNS 90 (305)
T ss_pred eEEEEec
Confidence 9998854
No 109
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=27.71 E-value=2.9e+02 Score=24.09 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc-----hHH-HHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL-----VPE-VVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~-----aae-a~vA~~~gv~ 207 (283)
..+|-..+.+-+.+++++.|+.+. + ...+ ....+. +.+...++|.+=+.. .+. ...++..|+|
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~----~--~~~~--~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iP 81 (289)
T cd01540 10 EEPWFQTEWKFAKKAAKEKGFTVV----K--IDVP--DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMK 81 (289)
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEE----E--ccCC--CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCe
Confidence 456667899999999999887765 1 2222 222232 233445666555433 222 4567889999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 82 vV~~~ 86 (289)
T cd01540 82 VVAVD 86 (289)
T ss_pred EEEec
Confidence 99873
No 110
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=27.40 E-value=2.6e+02 Score=24.10 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHHc-CCcEEeeeeEEEecCCcccCHHHHHH---HHHcCCcEEecCc------hHHHHHHHHcC
Q psy17032 136 MEPAFDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNMTL------VPEVVLAKEAG 205 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~-g~~~~~~G~~~~~~Gp~fet~aE~~~---~~~~Gad~V~Me~------aaea~vA~~~g 205 (283)
+..+|-..+...+.+.+++. |+.+. . . .+ ......+.+. +...++|++=+.. .+....+.+.|
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~~g~~~~-~---~-~~--~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ 81 (270)
T cd06308 9 LADPWRAAMNDEIQREASNYPDVELI-I---A-DA--ADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAG 81 (270)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEE-E---E-cC--CCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCC
Confidence 34566678888888888886 77665 1 1 11 1222223333 3344556442221 23445667899
Q ss_pred CcEEEEE
Q psy17032 206 LLYAAVA 212 (283)
Q Consensus 206 v~~~~i~ 212 (283)
+|++.+-
T Consensus 82 ipvV~~~ 88 (270)
T cd06308 82 IPVILLD 88 (270)
T ss_pred CCEEEeC
Confidence 9999874
No 111
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=27.37 E-value=1.7e+02 Score=21.11 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=27.5
Q ss_pred EECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEecccccCCCCCCCCcEEEec
Q psy17032 45 TIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILD 107 (283)
Q Consensus 45 ~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~ 107 (283)
.+.+++++++ |.|. +. ....+.+.+.+.+.+..++. |++|+.
T Consensus 20 ~~~~~~v~i~---G~G~------~g-~~~a~~l~~~~~~~v~v~~r-----------di~i~~ 61 (86)
T cd05191 20 SLKGKTVVVL---GAGE------VG-KGIAKLLADEGGKKVVLCDR-----------DILVTA 61 (86)
T ss_pred CCCCCEEEEE---CCCH------HH-HHHHHHHHHcCCCEEEEEcC-----------CEEEEc
Confidence 3567888877 6653 22 23456777777777877766 887753
No 112
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.90 E-value=2.7e+02 Score=25.77 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEec----CchHHHHHHHHcCCc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNM----TLVPEVVLAKEAGLL 207 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~M----e~aaea~vA~~~gv~ 207 (283)
++..+|-.++++-+.+.+++.|..+. -. .+.. ....|. +.+.+.++|.+=+ ..-+......+.++|
T Consensus 67 ~~~~~~~~~i~~gi~~~~~~~gy~~~-l~----~~~~--~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~~P 139 (333)
T COG1609 67 DITNPFFAEILKGIEEAAREAGYSLL-LA----NTDD--DPEKEREYLETLLQKRVDGLILLGERPNDSLLELLAAAGIP 139 (333)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCEEE-EE----CCCC--CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCC
Confidence 34456778999999999999998776 21 1222 222222 3445555554433 335677788889999
Q ss_pred EEEEEEeee
Q psy17032 208 YAAVAMATD 216 (283)
Q Consensus 208 ~~~i~~vsd 216 (283)
++.+--..+
T Consensus 140 ~V~i~~~~~ 148 (333)
T COG1609 140 VVVIDRSPP 148 (333)
T ss_pred EEEEeCCCc
Confidence 998876444
No 113
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.68 E-value=1.3e+02 Score=30.34 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEE
Q psy17032 140 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 190 (283)
Q Consensus 140 ~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V 190 (283)
-|+.+++.+.+.|+++|+++.-+|+ ||.++.++++++|+|.+
T Consensus 588 ~~~~~v~~i~~~a~~l~i~viAegV---------E~~~~~~~l~~~g~d~~ 629 (651)
T PRK13561 588 EDDSMVAAIIMLAQSLNLQVIAEGV---------ETEAQRDWLLKAGVGIA 629 (651)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEecC---------CCHHHHHHHHhcCCCEE
Confidence 3567777788888888887764444 57777777888887754
No 114
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.61 E-value=1.5e+02 Score=24.55 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHH-HHHcCCcEEecCchH---------HHHHHHHcCCcEEE
Q psy17032 146 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL-FRSWNAHLVNMTLVP---------EVVLAKEAGLLYAA 210 (283)
Q Consensus 146 ~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~-~~~~Gad~V~Me~aa---------ea~vA~~~gv~~~~ 210 (283)
..+..+.++.|+.+. .++.|.|+.|+-. .-+-.+++|++++-. ....+++.|+.-..
T Consensus 30 kvia~~l~d~GfeVi--------~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 30 KVIARALADAGFEVI--------NLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHhCCceEE--------ecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE
Confidence 445566777888877 5688999999644 345678999998754 34578999988776
No 115
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.36 E-value=1.7e+02 Score=23.55 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecCchH
Q psy17032 146 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTLVP 196 (283)
Q Consensus 146 ~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me~aa 196 (283)
..+....+..|+++.+ ...|.|++|. +..++.++|+|++++.-
T Consensus 20 ~iv~~~l~~~GfeVi~--------lg~~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 20 KVIATAYADLGFDVDV--------GPLFQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred HHHHHHHHhCCcEEEE--------CCCCCCHHHHHHHHHHcCCCEEEEcCch
Confidence 3444556667888773 3445677774 56777899999988754
No 116
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.11 E-value=2.7e+02 Score=24.10 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHH-HH---HHHHHcCCcEEecC---c---hHHHHHHHHcCC
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRA-ES---NLFRSWNAHLVNMT---L---VPEVVLAKEAGL 206 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~a-E~---~~~~~~Gad~V~Me---~---aaea~vA~~~gv 206 (283)
..+|-..+..-+.+.+++.|+.+. . .. ....++ |. +.+...++|++=.. . .+....+.+.|+
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~v~-~-----~~--~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~i 81 (282)
T cd06318 10 NSPFFAALTEAAKAHAKALGYELI-S-----TD--AQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGV 81 (282)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEE-E-----Ec--CCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCC
Confidence 455667889999999999987765 1 11 112222 22 33444555543221 1 234567788999
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 82 PvV~~~~ 88 (282)
T cd06318 82 PVVVVDS 88 (282)
T ss_pred CEEEecC
Confidence 9998743
No 117
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.03 E-value=4.2e+02 Score=22.67 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCc--EEecC--chHHHHHHHHcCCc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAH--LVNMT--LVPEVVLAKEAGLL 207 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad--~V~Me--~aaea~vA~~~gv~ 207 (283)
++..+|-..+..-+.+.++++|..+. . ...+ .....|. +.+...++| ++... .......+...++|
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~~~~~~-~-----~~~~-~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~iP 80 (265)
T cd06285 8 RLTDTVMATMYEGIEEAAAERGYSTF-V-----ANTG-DNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTRRGVP 80 (265)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCEEE-E-----EeCC-CCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHHcCCC
Confidence 34456778999999999999987765 1 1111 1112232 334444555 33321 22344556778999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 81 vv~~~ 85 (265)
T cd06285 81 FVLVL 85 (265)
T ss_pred EEEEc
Confidence 97764
No 118
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=25.49 E-value=56 Score=28.55 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEEec
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM 192 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V~M 192 (283)
++-+|+++.+ .|++.|+.+. -|.. ||.|+....++|++.|=.
T Consensus 86 sP~~~~~v~~----~~~~~~i~~i-PG~~---------TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 86 SPGLTPELAK----HAQDHGIPII-PGVA---------TPSEIMLALELGITALKL 127 (204)
T ss_pred CCCCCHHHHH----HHHHcCCcEE-CCCC---------CHHHHHHHHHCCCCEEEE
Confidence 4556666554 5667788887 4653 788988777788888754
No 119
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=25.38 E-value=3.7e+02 Score=22.95 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecC-----chHHHHHHHHcCCcEE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMT-----LVPEVVLAKEAGLLYA 209 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me-----~aaea~vA~~~gv~~~ 209 (283)
...+|-..+.+-+.+++++.|+.+. +....+..-+...+. +.+...++|.+=.. ..+....+.+.|+|++
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv 84 (270)
T cd01545 9 PSPGYVSEIQLGALDACRDTGYQLV----IEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYV 84 (270)
T ss_pred CCcccHHHHHHHHHHHHHhCCCeEE----EEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEE
Confidence 3467788999999999999887765 111121111111112 23445566643221 2233566788999999
Q ss_pred EEEE
Q psy17032 210 AVAM 213 (283)
Q Consensus 210 ~i~~ 213 (283)
.+..
T Consensus 85 ~i~~ 88 (270)
T cd01545 85 RIAP 88 (270)
T ss_pred EEec
Confidence 8864
No 120
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.01 E-value=4.3e+02 Score=22.45 Aligned_cols=73 Identities=14% Similarity=-0.018 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEec----CchHHHHHHHHcCCcE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNM----TLVPEVVLAKEAGLLY 208 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~M----e~aaea~vA~~~gv~~ 208 (283)
...+|-.++.+-+++.++++|+.+. + ...+......+. +.+.+..+|.+=. ........+.+.|+|+
T Consensus 9 ~~~~~~~~~~~gi~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipv 82 (264)
T cd01574 9 LALHGPSSTLAAIESAAREAGYAVT----L--SMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADVPV 82 (264)
T ss_pred CCcccHHHHHHHHHHHHHHCCCeEE----E--EeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCCCE
Confidence 3456668899999999999987765 1 122222222333 2333333443321 1222334456789999
Q ss_pred EEEEEe
Q psy17032 209 AAVAMA 214 (283)
Q Consensus 209 ~~i~~v 214 (283)
+.+-..
T Consensus 83 v~~~~~ 88 (264)
T cd01574 83 VFVDGS 88 (264)
T ss_pred EEEecc
Confidence 988653
No 121
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=24.92 E-value=3e+02 Score=24.36 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-H---HHHHHcCCc-EEecCch-----HHHHHHHHcCC
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-S---NLFRSWNAH-LVNMTLV-----PEVVLAKEAGL 206 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~---~~~~~~Gad-~V~Me~a-----aea~vA~~~gv 206 (283)
..+|-.++...+.+++++.|+.+. .- .++ ..+.+ . +.+...++| ++-+... +....++..|+
T Consensus 37 ~~~f~~~~~~~i~~~~~~~G~~~~-~~----~~~---~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~i 108 (295)
T PRK10653 37 NNPFFVSLKDGAQKEADKLGYNLV-VL----DSQ---NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 (295)
T ss_pred CChHHHHHHHHHHHHHHHcCCeEE-Ee----cCC---CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCC
Confidence 456678999999999999998776 21 111 12222 2 233344555 2223222 34467778899
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 109 pvV~~~~ 115 (295)
T PRK10653 109 PVITLDR 115 (295)
T ss_pred CEEEEcc
Confidence 9998853
No 122
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=24.90 E-value=2.9e+02 Score=25.33 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|-..+.+-+++++++.|+.+. - ..+ ......+. +.+.+.++|.+=+.. .+....+.+.|+|
T Consensus 36 ~~~f~~~~~~gi~~~a~~~g~~l~-i-----~~~-~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iP 108 (330)
T PRK10355 36 RLERWQKDRDIFVKKAESLGAKVF-V-----QSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIK 108 (330)
T ss_pred CchHHHHHHHHHHHHHHHcCCEEE-E-----ECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCe
Confidence 345677899999999999987766 1 122 11212232 334444666554432 2455777888999
Q ss_pred EEEE
Q psy17032 208 YAAV 211 (283)
Q Consensus 208 ~~~i 211 (283)
++.+
T Consensus 109 vV~i 112 (330)
T PRK10355 109 VLAY 112 (330)
T ss_pred EEEE
Confidence 9987
No 123
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.86 E-value=3.4e+02 Score=23.14 Aligned_cols=72 Identities=7% Similarity=-0.005 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc---hHHHHHHHHcCCcEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL---VPEVVLAKEAGLLYAA 210 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~---aaea~vA~~~gv~~~~ 210 (283)
..+|-..+.+.+.+.+++.|+.+. . ...+. ....+. +.+.+.++|.+=+.. -.........++|++.
T Consensus 11 ~~~~~~~~~~~i~~~~~~~g~~~~-~-----~~~~~-~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~ipvv~ 83 (269)
T cd06288 11 TTPFAVEIILGAQDAAREHGYLLL-V-----VNTGG-DDELEAEAVEALLDHRVDGIIYATMYHREVTLPPELLSVPTVL 83 (269)
T ss_pred CCccHHHHHHHHHHHHHHCCCEEE-E-----EeCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCChhHHHHHhcCCCEEE
Confidence 456778899999999999887765 1 12111 111222 334445555443332 2233445668999998
Q ss_pred EEEee
Q psy17032 211 VAMAT 215 (283)
Q Consensus 211 i~~vs 215 (283)
+-..+
T Consensus 84 ~~~~~ 88 (269)
T cd06288 84 LNCYD 88 (269)
T ss_pred Eeccc
Confidence 86443
No 124
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.74 E-value=4e+02 Score=22.64 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEe-cCch-H-HHHHHHHcCCcE
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVN-MTLV-P-EVVLAKEAGLLY 208 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~-Me~a-a-ea~vA~~~gv~~ 208 (283)
.+..+|-..+.+.+++++++.|+.+. . .+ +.+....+. +++.+.++|++= +... + ....+...|+|+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~g~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~ipv 80 (267)
T cd06284 8 DIANPFFSEILKGIEDEAREAGYGVL-L-----GD-TRSDPEREQEYLDLLRRKQADGIILLDGSLPPTALTALAKLPPI 80 (267)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCeEE-E-----ec-CCCChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhcCCCE
Confidence 33467778999999999999998776 1 11 222222222 344445565322 2221 1 122344569999
Q ss_pred EEEE
Q psy17032 209 AAVA 212 (283)
Q Consensus 209 ~~i~ 212 (283)
+.+.
T Consensus 81 v~~~ 84 (267)
T cd06284 81 VQAC 84 (267)
T ss_pred EEEe
Confidence 9774
No 125
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=24.66 E-value=4e+02 Score=23.04 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccC-HHHHH---HHHHcCCcEEecCch---H--HHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS-RAESN---LFRSWNAHLVNMTLV---P--EVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet-~aE~~---~~~~~Gad~V~Me~a---a--ea~vA~~~gv~ 207 (283)
..+|-.++..-+.+.+++.|+.+. . ........ ..+.+ .+.+.++|.+=+... . +...++..|+|
T Consensus 10 ~~~f~~~~~~gi~~~a~~~g~~~~-~-----~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giP 83 (268)
T cd06306 10 KDAYWLSVNYGMVEEAKRLGVSLK-L-----LEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIP 83 (268)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEE-E-----ecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCC
Confidence 456667888999999999987775 1 12222222 22333 333456765544321 1 24556788999
Q ss_pred EEEE
Q psy17032 208 YAAV 211 (283)
Q Consensus 208 ~~~i 211 (283)
++.+
T Consensus 84 vV~~ 87 (268)
T cd06306 84 VIAL 87 (268)
T ss_pred EEEe
Confidence 9987
No 126
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=24.65 E-value=3.8e+02 Score=23.10 Aligned_cols=70 Identities=21% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecC----chHHHHHHHHcCCcEEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMT----LVPEVVLAKEAGLLYAAV 211 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me----~aaea~vA~~~gv~~~~i 211 (283)
..+|...+.+-+.+.+++.|+.+. +. .+.+. + .... +.+.+.++|++=.. ..+....+...|+|++.+
T Consensus 21 ~~~~~~~~~~gi~~~~~~~g~~~~----v~-~~~~~-~-~~~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 21 SDPFFLSLLGGIADALAERGYDLL----LS-FVSSP-D-RDWLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVVW 93 (275)
T ss_pred CCchHHHHHHHHHHHHHHcCCEEE----EE-eCCch-h-HHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEE
Confidence 456778899999999999988776 11 22222 1 1112 33444455544221 224456677889999987
Q ss_pred EE
Q psy17032 212 AM 213 (283)
Q Consensus 212 ~~ 213 (283)
-.
T Consensus 94 ~~ 95 (275)
T cd06295 94 GR 95 (275)
T ss_pred CC
Confidence 43
No 127
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=24.64 E-value=1.3e+02 Score=26.11 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=22.8
Q ss_pred EECCeEEEEEeccCCCccc-CCCccchHHHHHHHHHcCCCEEEEe
Q psy17032 45 TIQGVDCVILARHGRKHTI-NPSNVNYRANIWALKSVGCTHVIVS 88 (283)
Q Consensus 45 ~~~G~~Vv~~~r~G~g~~~-~~~~V~~~a~~~~l~~~Gv~~iI~t 88 (283)
.|++-.|++. |.-... ++++ .+.|+|+.+|++.||..
T Consensus 59 ~yq~g~IlVa---g~NFGcGSSRE----HApwALk~~Gi~~VIA~ 96 (191)
T COG0066 59 PYQGGDILVA---GENFGCGSSRE----HAPWALKDYGIRAVIAP 96 (191)
T ss_pred ccCCccEEEe---cCCCCCCccHH----HHHHHHHHcCeeEEEec
Confidence 3556677777 332111 2222 23799999999988763
No 128
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=24.63 E-value=3.4e+02 Score=24.51 Aligned_cols=71 Identities=7% Similarity=0.104 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecC----chHHHHHHHH-cCCcEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMT----LVPEVVLAKE-AGLLYAA 210 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me----~aaea~vA~~-~gv~~~~ 210 (283)
..+|-..+.+-+.+.++++|+.+. . ..+....+...+ ++.+.+.++|.+=.. .-.....+.+ .|+|++.
T Consensus 70 ~~~~~~~~~~gi~~~~~~~g~~~~-~----~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~ 144 (341)
T PRK10703 70 EAPYFAEIIEAVEKNCYQKGYTLI-L----CNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVV 144 (341)
T ss_pred CCchHHHHHHHHHHHHHHCCCEEE-E----EeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEE
Confidence 345678899999999999997765 1 122222222212 234445555544322 1223344556 7999997
Q ss_pred EE
Q psy17032 211 VA 212 (283)
Q Consensus 211 i~ 212 (283)
+-
T Consensus 145 ~d 146 (341)
T PRK10703 145 MD 146 (341)
T ss_pred Ee
Confidence 64
No 129
>smart00030 CLb CLUSTERIN Beta chain.
Probab=24.57 E-value=85 Score=27.43 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=34.1
Q ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHHhcccc-CChhHH-----HHHHhhhhhcCcC
Q psy17032 228 CVADVLKT---FKENVEKITKLFVHIVPKIAAK-DWTNEI-----TELKSVVETSNMS 276 (283)
Q Consensus 228 ~~~e~~~~---~~~~~~~~~~ll~~~l~~l~~~-~~~~~~-----~~~~~~~~~~~~~ 276 (283)
.|..++.. +++.-+.+.++..++=.+|.+. .-||++ -+|+.-|+.+||.
T Consensus 44 eh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~alWeECKpCLk~tCmk 101 (206)
T smart00030 44 ERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMALWEECKPCLKQTCMK 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35555544 4444455778888888889744 448765 5899999999873
No 130
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.34 E-value=3.9e+02 Score=22.83 Aligned_cols=72 Identities=6% Similarity=-0.019 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH-HHHHHHcCCcEEecCch----HH-HHHHHHcCCcEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLV----PE-VVLAKEAGLLYAA 210 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE-~~~~~~~Gad~V~Me~a----ae-a~vA~~~gv~~~~ 210 (283)
..+|...+.+-+.+++++.|+.+. . . .+....+...+ .+.+.+.++|.+=+... .. ..+....++|++.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~---~-~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~ 84 (269)
T cd06275 10 TNPFFAEVVRGVEQYCYRQGYNLI-L---C-NTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVV 84 (269)
T ss_pred CcchHHHHHHHHHHHHHHcCCEEE-E---E-eCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEE
Confidence 456778899999999999987775 1 1 12222221112 23455566775554321 11 2233346999987
Q ss_pred EEE
Q psy17032 211 VAM 213 (283)
Q Consensus 211 i~~ 213 (283)
+-.
T Consensus 85 i~~ 87 (269)
T cd06275 85 MDW 87 (269)
T ss_pred Eec
Confidence 754
No 131
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=24.22 E-value=5.5e+02 Score=23.39 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCcEEeeeeEEEecCC--cccCHHHH-----HHHHHcCCcEEecCch----HHHHHHHHcCCcEE
Q psy17032 142 NSTRQIIIDSLKELGFKFHDKGTAVCIEGP--RFSSRAES-----NLFRSWNAHLVNMTLV----PEVVLAKEAGLLYA 209 (283)
Q Consensus 142 ~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp--~fet~aE~-----~~~~~~Gad~V~Me~a----aea~vA~~~gv~~~ 209 (283)
.++...++.+++.....+. .++=| .|.++.+. |.++.-||++|-+|.. +........|+|+.
T Consensus 61 dem~~h~~aV~rg~~~~~v------v~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~~~~~~i~~l~~~gIpV~ 133 (263)
T TIGR00222 61 ADMIYHTAAVKRGAPNCLI------VTDLPFMSYATPEQALKNAARVMQETGANAVKLEGGEWLVETVQMLTERGVPVV 133 (263)
T ss_pred HHHHHHHHHHHhhCCCceE------EeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcHhHHHHHHHHHHCCCCEE
Confidence 4566667777665443332 11222 34444432 4466689999999998 44566778999988
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=24.21 E-value=66 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=25.5
Q ss_pred EECCeEEEEEeccCCCcccCCCccchHHHHHHHHHcCCCEEEEec
Q psy17032 45 TIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVST 89 (283)
Q Consensus 45 ~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l~~~Gv~~iI~tg 89 (283)
.++|++|+++ |-|. . .++.+..|...|++.|..+|
T Consensus 9 ~l~~~~vlvi---GaGg------~-ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 9 DLKGKRVLVI---GAGG------A-ARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp TGTTSEEEEE---SSSH------H-HHHHHHHHHHTTSSEEEEEE
T ss_pred CcCCCEEEEE---CCHH------H-HHHHHHHHHHcCCCEEEEEE
Confidence 4678999998 6553 2 33457788888999887766
No 133
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.17 E-value=3.4e+02 Score=23.29 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHH---HHHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~---~~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|-..+.+-+.+++++.|+++. + .+.. .....+.+. +...++|.+=... -+....+.+.|+|
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~----~--~~~~-~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ip 82 (277)
T cd06319 10 RIPFWQIMGRGVKSKAKALGYDAV----E--LSAE-NSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIP 82 (277)
T ss_pred CchHHHHHHHHHHHHHHhcCCeEE----E--ecCC-CCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCC
Confidence 456778899999999999987775 1 2222 221223222 3334666553322 1345677889999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 83 vV~~~ 87 (277)
T cd06319 83 VVIAD 87 (277)
T ss_pred EEEEe
Confidence 98763
No 134
>PRK10200 putative racemase; Provisional
Probab=24.03 E-value=41 Score=29.76 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHHHHcCCCEEEE
Q psy17032 72 ANIWALKSVGCTHVIV 87 (283)
Q Consensus 72 a~~~~l~~~Gv~~iI~ 87 (283)
..++-|.+.||+.|+.
T Consensus 66 ~~~~~L~~~g~~~ivi 81 (230)
T PRK10200 66 EAALGLQRAGAEGIVL 81 (230)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3567788999998754
No 135
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.89 E-value=60 Score=28.76 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHHHHcCCcEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 190 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~~~~Gad~V 190 (283)
++-+|+++.+ .+++.++.+. -|+. |+.|+....++|++.|
T Consensus 97 sP~~~~~v~~----~~~~~~i~~i-PG~~---------TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 97 TPLFNPDIAK----VCNRRKVPYS-PGCG---------SLSEIGYAEELGCEIV 136 (222)
T ss_pred CCCCCHHHHH----HHHHcCCCEe-CCCC---------CHHHHHHHHHCCCCEE
Confidence 4556776665 4556777777 4553 7888877667777766
No 136
>TIGR00035 asp_race aspartate racemase.
Probab=23.78 E-value=45 Score=29.25 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCEEEEecc
Q psy17032 72 ANIWALKSVGCTHVIVSTA 90 (283)
Q Consensus 72 a~~~~l~~~Gv~~iI~tg~ 90 (283)
..++.|...|++.|+....
T Consensus 66 ~~~~~L~~~g~d~iviaCN 84 (229)
T TIGR00035 66 DIAVKLENAGADFIIMPCN 84 (229)
T ss_pred HHHHHHHHcCCCEEEECCc
Confidence 3466777889998876543
No 137
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=23.72 E-value=2.8e+02 Score=23.71 Aligned_cols=72 Identities=6% Similarity=-0.124 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHH---HHHHcCCcEEecCc----hHHHHHHHHcCCc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTL----VPEVVLAKEAGLL 207 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~---~~~~~Gad~V~Me~----aaea~vA~~~gv~ 207 (283)
++..+|...+.+.+.+++++.|..+. + .. .......+.+ .+...++|++=..+ -+....+...|+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~~~~----~--~~-~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~ip 80 (268)
T cd06298 8 DITNSYFAELARGIDDIATMYKYNII----L--SN-SDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKRSPTP 80 (268)
T ss_pred CCcchHHHHHHHHHHHHHHHcCCeEE----E--Ee-CCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHHhcCCCC
Confidence 33466778899999999999887665 1 11 1222233333 33445666544321 2344445567999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 81 vV~~~~ 86 (268)
T cd06298 81 VVLAGS 86 (268)
T ss_pred EEEEcc
Confidence 988743
No 138
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=23.71 E-value=3e+02 Score=23.70 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEeeeeEEEecCCcccCH-HHHH---HHHHcCCcEEecCc------hHHHHHHHHcC
Q psy17032 137 EPAFDNSTRQIIIDSLKE-LGFKFHDKGTAVCIEGPRFSSR-AESN---LFRSWNAHLVNMTL------VPEVVLAKEAG 205 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~-~g~~~~~~G~~~~~~Gp~fet~-aE~~---~~~~~Gad~V~Me~------aaea~vA~~~g 205 (283)
..+|-.++.+-+.+++++ .|+.+. - ..+ ...+ .+.+ .+.+.++|.+=+.. -.....+...|
T Consensus 10 ~~~~~~~~~~gi~~~~~~~~~~~~~-~-----~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~ 81 (272)
T cd06301 10 DDNFLTLLRNAMKEHAKVLGGVELQ-F-----EDA--KNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAG 81 (272)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEE-E-----eCC--CCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCC
Confidence 356667888999999998 777665 1 122 2222 2333 33445666554322 12345557889
Q ss_pred CcEEEEE
Q psy17032 206 LLYAAVA 212 (283)
Q Consensus 206 v~~~~i~ 212 (283)
+|++.+-
T Consensus 82 iPvv~~~ 88 (272)
T cd06301 82 IPLVYVN 88 (272)
T ss_pred CeEEEec
Confidence 9998764
No 139
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=23.60 E-value=5.3e+02 Score=22.95 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFH 160 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~ 160 (283)
+..+-|++|.+.+.+.+++.|+++.
T Consensus 74 y~~~g~~eLa~~i~~~l~~~gi~~~ 98 (253)
T cd07363 74 YPAPGSPELAERVAELLKAAGIPAR 98 (253)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCcc
Confidence 4567899999999999998887654
No 140
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=23.50 E-value=3.6e+02 Score=22.88 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC----chHHHHHHHHcCCc
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT----LVPEVVLAKEAGLL 207 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me----~aaea~vA~~~gv~ 207 (283)
++..+|...+.+-+.++++++|+++. .. .+. .....+. +.+.+.++|++=.. ..+....+.+.|+|
T Consensus 8 ~~~~~~~~~~~~gi~~~~~~~g~~~~-~~----~~~--~~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~~~ip 80 (259)
T cd01542 8 RLDSFSTSRTVKGILAALYENGYQML-LM----NTN--FSIEKEIEALELLARQKVDGIILLATTITDEHREAIKKLNVP 80 (259)
T ss_pred CCccchHHHHHHHHHHHHHHCCCEEE-EE----eCC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhcCCCC
Confidence 34456778899999999999998775 11 122 2112223 33444455544332 12333455677999
Q ss_pred EEEEE
Q psy17032 208 YAAVA 212 (283)
Q Consensus 208 ~~~i~ 212 (283)
++.+-
T Consensus 81 vv~~~ 85 (259)
T cd01542 81 VVVVG 85 (259)
T ss_pred EEEEe
Confidence 99884
No 141
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.20 E-value=4.4e+02 Score=22.44 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHH---HH-HHHHcCCcEEecC----chHHHHHHHHcCCcE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SN-LFRSWNAHLVNMT----LVPEVVLAKEAGLLY 208 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE---~~-~~~~~Gad~V~Me----~aaea~vA~~~gv~~ 208 (283)
..+|-..+.+-+.+.+++.|+++. + ...+. ...+ .. .+.+.++|++=+. ..+....+.+.|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~----~--~~~~~--~~~~~~~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipv 86 (270)
T cd06294 15 QNPFFIEVLRGISAVANENGYDIS----L--ATGKN--EEELLEEVKKMIQQKRVDGFILLYSREDDPIIDYLKEEKFPF 86 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEE----E--ecCCC--cHHHHHHHHHHHHHcCcCEEEEecCcCCcHHHHHHHhcCCCE
Confidence 456778899999999999987776 1 22221 1222 22 2444445543332 234455678889999
Q ss_pred EEEEE
Q psy17032 209 AAVAM 213 (283)
Q Consensus 209 ~~i~~ 213 (283)
+.+-.
T Consensus 87 V~~~~ 91 (270)
T cd06294 87 VVIGK 91 (270)
T ss_pred EEECC
Confidence 98853
No 142
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=23.17 E-value=4.5e+02 Score=23.29 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCc-ccCHHHHHHHH---HcCCcEEecCc------hHHHHHHHHcCC
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPR-FSSRAESNLFR---SWNAHLVNMTL------VPEVVLAKEAGL 206 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~-fet~aE~~~~~---~~Gad~V~Me~------aaea~vA~~~gv 206 (283)
..+|-..+.+-+.+.+++.|+.+. +.++. +....+.+.++ ..++|.+=..+ .+....++..|+
T Consensus 10 ~~~f~~~i~~gi~~~a~~~g~~v~-------~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~i 82 (298)
T cd06302 10 GIPYFNRMEEGAKEAAKELGVDAI-------YVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGI 82 (298)
T ss_pred CChHHHHHHHHHHHHHHHhCCeEE-------EECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCC
Confidence 456677899999999999887765 11222 22222333333 34566443322 233455678899
Q ss_pred cEEEEE
Q psy17032 207 LYAAVA 212 (283)
Q Consensus 207 ~~~~i~ 212 (283)
|++.+-
T Consensus 83 PvV~v~ 88 (298)
T cd06302 83 KVVTHD 88 (298)
T ss_pred eEEEEc
Confidence 988874
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=23.14 E-value=2.6e+02 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEECCeEEEEEeccCCCcc--------c-CCCccchHHHHHHH---HHcCCCEEEEecccccC
Q psy17032 43 QGTIQGVDCVILARHGRKHT--------I-NPSNVNYRANIWAL---KSVGCTHVIVSTATGSL 94 (283)
Q Consensus 43 ~G~~~G~~Vv~~~r~G~g~~--------~-~~~~V~~~a~~~~l---~~~Gv~~iI~tg~aG~l 94 (283)
.++++|++|+++. |-+|+. . -|+---|+=+.++| .+||--.|-++.++|+.
T Consensus 101 lar~~G~pv~vIG-~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAy 163 (317)
T COG0825 101 LARFGGQPVVVIG-HQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAY 163 (317)
T ss_pred eeeECCeeEEEEe-eecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCCC
Confidence 5788999999993 555441 1 11112266445555 58999999988888873
No 144
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=23.05 E-value=1.4e+02 Score=28.05 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=22.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEE
Q psy17032 135 PMEPAFDNSTRQIIIDSLKELGFKFH 160 (283)
Q Consensus 135 ~~~~~~d~~L~~~~~~~a~~~g~~~~ 160 (283)
.+.++.|++|.+.+.+.+.+.|+++.
T Consensus 93 ~~~~~gd~eLA~~I~~~l~~~G~dva 118 (329)
T cd07369 93 KHYFPGNPEVAEQLLRALVHDSFDCA 118 (329)
T ss_pred ccCCCCCHHHHHHHHHHHHHCCCCee
Confidence 36788999999999999999887663
No 145
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=22.81 E-value=5.8e+02 Score=23.66 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCEEEEecccccC
Q psy17032 73 NIWALKSVGCTHVIVSTATGSL 94 (283)
Q Consensus 73 ~~~~l~~~Gv~~iI~tg~aG~l 94 (283)
...++.+.|++.|+.+|+..+.
T Consensus 180 ~a~~l~~~Gadgi~~~nt~~~~ 201 (325)
T cd04739 180 MAKQLDAAGADGLVLFNRFYQP 201 (325)
T ss_pred HHHHHHHcCCCeEEEEcCcCCC
Confidence 4677889999999999986443
No 146
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=22.58 E-value=3.9e+02 Score=22.68 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHH---HHHcCCcEEec-Cch-----HHHHHHHHcCC
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNM-TLV-----PEVVLAKEAGL 206 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~---~~~~Gad~V~M-e~a-----aea~vA~~~gv 206 (283)
+..+|-..+.+.+.+++++.|+.+. + .+. ......+.+. +.+.++|.+=+ ... +....++..|+
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~g~~v~----~--~~~-~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~i 81 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKELGYELT----V--LDA-QNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGI 81 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHcCceEE----e--cCC-CCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCC
Confidence 3456777888889999999887665 1 121 2222223333 33345665333 221 22345677899
Q ss_pred cEEEEEE
Q psy17032 207 LYAAVAM 213 (283)
Q Consensus 207 ~~~~i~~ 213 (283)
|++.+-.
T Consensus 82 pvv~~~~ 88 (268)
T cd06323 82 PVFTIDR 88 (268)
T ss_pred cEEEEcc
Confidence 9998843
No 147
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.42 E-value=2.2e+02 Score=23.01 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecCch---------HHHHHHHHcCCc
Q psy17032 147 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTLV---------PEVVLAKEAGLL 207 (283)
Q Consensus 147 ~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me~a---------aea~vA~~~gv~ 207 (283)
.+....+..|+++.+-|+ +.++++. +..++.++|+|+||+. -.....++.|++
T Consensus 18 iv~~~L~~~GfeVidLG~--------~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~ 80 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGV--------LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLK 80 (128)
T ss_pred HHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCC
Confidence 344456678888875444 3456664 5667789999998872 234456677774
No 148
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.37 E-value=3.8e+02 Score=23.56 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHHHHH---HHcCCcEEecCc------hHHHHHHHHcCCc
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLF---RSWNAHLVNMTL------VPEVVLAKEAGLL 207 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~~~~---~~~Gad~V~Me~------aaea~vA~~~gv~ 207 (283)
..+|...+.+.+.+.+++.|+.+. +. ..+ .+....+.+.+ ...++|.+=... -+....+++.|+|
T Consensus 10 ~~~~~~~~~~gi~~~a~~~g~~~~----~~-~~~-~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iP 83 (294)
T cd06316 10 GSDWSNAQVRGAKDEFAKLGIEVV----AT-TDA-QFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIK 83 (294)
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----Ee-cCC-CCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCc
Confidence 346777888889999999887765 11 121 22223333333 234666554422 2335667889999
Q ss_pred EEEEEE
Q psy17032 208 YAAVAM 213 (283)
Q Consensus 208 ~~~i~~ 213 (283)
++.+-.
T Consensus 84 vV~~~~ 89 (294)
T cd06316 84 LVFMDN 89 (294)
T ss_pred EEEecC
Confidence 997643
No 149
>KOG2387|consensus
Probab=22.20 E-value=2.7e+02 Score=27.64 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCcEEeeeeEEEecCCccc------CHHHH-HHHHHc-CCcEE---------ecCchHHH-HHHHHcC
Q psy17032 144 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFS------SRAES-NLFRSW-NAHLV---------NMTLVPEV-VLAKEAG 205 (283)
Q Consensus 144 L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fe------t~aE~-~~~~~~-Gad~V---------~Me~aaea-~vA~~~g 205 (283)
+..++..++-..+.++. +.+++.-..| .+... ..|+.+ +||.| |+|+--+| .-||+++
T Consensus 317 v~KAL~Ha~~~~~~kl~----i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~ 392 (585)
T KOG2387|consen 317 VVKALEHAALAINRKLE----IVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENK 392 (585)
T ss_pred HHHHHHHHHHHhcccce----EEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcC
Confidence 34555555555554444 3334443333 22222 346654 56654 56665444 5799999
Q ss_pred CcEEEEEE
Q psy17032 206 LLYAAVAM 213 (283)
Q Consensus 206 v~~~~i~~ 213 (283)
+||++||+
T Consensus 393 iP~LGiCL 400 (585)
T KOG2387|consen 393 IPFLGICL 400 (585)
T ss_pred CCeEeeeh
Confidence 99999985
No 150
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=21.69 E-value=3.6e+02 Score=23.32 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.1
Q ss_pred cCCcccCHHHHH
Q psy17032 169 EGPRFSSRAESN 180 (283)
Q Consensus 169 ~Gp~fet~aE~~ 180 (283)
..|||.++.+.+
T Consensus 32 ~SpR~V~~~~a~ 43 (207)
T PRK13958 32 KSKRHQTITQIK 43 (207)
T ss_pred CCcccCCHHHHH
Confidence 344444444433
No 151
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=21.39 E-value=3.9e+02 Score=24.01 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecCc----hHHHHHHHHcCCcEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL----VPEVVLAKEAGLLYA 209 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me~----aaea~vA~~~gv~~~ 209 (283)
..+|-..+.+-+.+.+++.|+.+. -. ..+. ....|. +.+.+.++|.+=... -+....+.+.|+|++
T Consensus 74 ~~~~~~~~~~gi~~~~~~~g~~~~-~~----~~~~--~~~~~~~~~~~~~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV 146 (331)
T PRK14987 74 TNQVFAEVLRGIESVTDAHGYQTM-LA----HYGY--KPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVV 146 (331)
T ss_pred cchhHHHHHHHHHHHHHHCCCEEE-Ee----cCCC--CHHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHhCCCCEE
Confidence 345667899999999999887765 11 1221 111222 334444555443321 233445678899998
Q ss_pred EE
Q psy17032 210 AV 211 (283)
Q Consensus 210 ~i 211 (283)
.+
T Consensus 147 ~~ 148 (331)
T PRK14987 147 EL 148 (331)
T ss_pred EE
Confidence 75
No 152
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=21.26 E-value=2.2e+02 Score=26.23 Aligned_cols=53 Identities=19% Similarity=0.048 Sum_probs=33.0
Q ss_pred EEEEEECCeEEEEEeccCCCcccCCCccchH---HHHHHHHHcCCCEEEEeccccc
Q psy17032 41 LLQGTIQGVDCVILARHGRKHTINPSNVNYR---ANIWALKSVGCTHVIVSTATGS 93 (283)
Q Consensus 41 ~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~---a~~~~l~~~Gv~~iI~tg~aG~ 93 (283)
.-.|+++|.+|+++..-..+...+...|.-. .+++....-.+-.|+++.|.|+
T Consensus 114 tg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGA 169 (294)
T COG0777 114 TGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGA 169 (294)
T ss_pred EEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcch
Confidence 4478999999988754555544454444311 2355555666777777766554
No 153
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=20.97 E-value=2.1e+02 Score=27.63 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=40.6
Q ss_pred CceEEEEeCCCCCCc---ccccccceee-ee--CCC-CCCcccEEEEEECCeEEEEEeccCCCcccCCCccchHHHHHHH
Q psy17032 5 KIKIGFIGGSGLNNP---QILENAQEVA-VD--TPY-GAPSDVLLQGTIQGVDCVILARHGRKHTINPSNVNYRANIWAL 77 (283)
Q Consensus 5 ~~~igIIggsgl~~~---~~l~~~~~~~-~~--~~~-G~~~~~~~~G~~~G~~Vv~~~r~G~g~~~~~~~V~~~a~~~~l 77 (283)
+++|+||| ||+..+ -.|...-++. +| .-. |+ . .-+.|...|..|-+= +|- +.|. ..+|+..++++
T Consensus 8 r~~IAVIG-sGisGLSAA~~Ls~rhdVTLfEA~~rlGGh-a-~Tv~~~~d~~g~~vD--tGf-iVyn--~~tYpnl~~Lf 79 (447)
T COG2907 8 RRKIAVIG-SGISGLSAAWLLSRRHDVTLFEADRRLGGH-A-NTVAGNTDGGGVFVD--TGF-IVYN--ERTYPNLTRLF 79 (447)
T ss_pred CcceEEEc-ccchhhhhHHhhhcccceEEEeccccccCc-c-ceeeccccCCceeec--cee-EEec--CCCcchHHHHH
Confidence 68999997 355554 2444333332 12 111 22 2 344466677775543 563 3332 24566668999
Q ss_pred HHcCCCE
Q psy17032 78 KSVGCTH 84 (283)
Q Consensus 78 ~~~Gv~~ 84 (283)
+.+|++.
T Consensus 80 ~~iGv~t 86 (447)
T COG2907 80 KTIGVDT 86 (447)
T ss_pred HHcCCCC
Confidence 9999985
No 154
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.78 E-value=5.4e+02 Score=23.83 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH-HHHHHcCCcEEecCchHHH
Q psy17032 146 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTLVPEV 198 (283)
Q Consensus 146 ~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~-~~~~~~Gad~V~Me~aaea 198 (283)
+.+.+..+..++++. ..|--+. ..++ +++. .||++|.|-++...
T Consensus 229 ~~v~~~~~~~~ipIi-------g~GGI~s-~~Da~e~l~-aGA~~V~v~t~~~~ 273 (334)
T PRK07565 229 RWIAILSGRVGADLA-------ATTGVHD-AEDVIKMLL-AGADVVMIASALLR 273 (334)
T ss_pred HHHHHHHhhcCCCEE-------EECCCCC-HHHHHHHHH-cCCCceeeehHHhh
Confidence 444455555566665 2455443 3444 4554 89999999876653
No 155
>KOG1467|consensus
Probab=20.71 E-value=4.5e+02 Score=26.37 Aligned_cols=20 Identities=5% Similarity=-0.072 Sum_probs=17.3
Q ss_pred CchHHHHHHHHcCCcEEEEE
Q psy17032 193 TLVPEVVLAKEAGLLYAAVA 212 (283)
Q Consensus 193 e~aaea~vA~~~gv~~~~i~ 212 (283)
-++.++.+|+++++|++++|
T Consensus 449 GTa~valvAna~nVPVlVCC 468 (556)
T KOG1467|consen 449 GTACVALVANAFNVPVLVCC 468 (556)
T ss_pred chHHHHHHhcccCCCEEEEe
Confidence 36778999999999999886
No 156
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=20.63 E-value=3.7e+02 Score=23.90 Aligned_cols=129 Identities=12% Similarity=0.020 Sum_probs=67.4
Q ss_pred HHHHHcCCCEEEEecccccCCCCCCCCcEEEeccccc-ccCCCcc----cccCCCCCCCCCcccCCCCCCCCHHHHHHHH
Q psy17032 75 WALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFID-RTRTRIQ----TFFDGSENSPNGVLHIPMEPAFDNSTRQIII 149 (283)
Q Consensus 75 ~~l~~~Gv~~iI~tg~aG~l~~~l~~GDiVi~~d~i~-~~~~~~~----t~~~~~~~~~~g~~~~~~~~~~d~~L~~~~~ 149 (283)
+++....++.|.+-+++|+.-- |+--+...... .++ .|. +.+... ....|.+-+.+--||.+++.+.++
T Consensus 65 ~ll~~a~~dvi~~~cTsgs~~~----G~~~~~~~i~~~~~g-~p~tt~~~A~~~A-L~alg~~RIalvTPY~~~v~~~~~ 138 (239)
T TIGR02990 65 LILPDEELDVVAYSCTSASVVI----GDDEVTRAINAAKPG-TPVVTPSSAAVDG-LAALGVRRISLLTPYTPETSRPMA 138 (239)
T ss_pred HhcCCCCCCEEEEccchhheec----CHHHHHHHHHhcCCC-CCeeCHHHHHHHH-HHHcCCCEEEEECCCcHHHHHHHH
Confidence 4445579999999999999732 21111111111 111 111 000000 000133333445789999999999
Q ss_pred HHHHHcCCcEEeeeeEEEecCCcc--cCHHHHH-HHHH---cCCcEEecCchH-----H-HHHHHHcCCcEE
Q psy17032 150 DSLKELGFKFHDKGTAVCIEGPRF--SSRAESN-LFRS---WNAHLVNMTLVP-----E-VVLAKEAGLLYA 209 (283)
Q Consensus 150 ~~a~~~g~~~~~~G~~~~~~Gp~f--et~aE~~-~~~~---~Gad~V~Me~aa-----e-a~vA~~~gv~~~ 209 (283)
+..++.|+.+...+-.-..++-.+ .+++.+. +.++ -++|+|=+++.. . ..+=+++|+|++
T Consensus 139 ~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVl 210 (239)
T TIGR02990 139 QYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVV 210 (239)
T ss_pred HHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEE
Confidence 999999998863321211122223 4565553 4443 367776555433 2 224466788876
No 157
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.48 E-value=4.8e+02 Score=22.33 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEec-Cc--hHHHHHHHHcCCcEEE
Q psy17032 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNM-TL--VPEVVLAKEAGLLYAA 210 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~M-e~--aaea~vA~~~gv~~~~ 210 (283)
..+|...+.+-+.+.++++|+.+. -. ..++. ...+. +.+...++|.+=. .. .+....+...|+|++.
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~-~~----~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~ipvV~ 85 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLI-LK----FVSDE--DEEEFELPSFLEDGKVDGIILLGGISTEYIKEIKELGIPFVL 85 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEE-EE----eCCCC--hHHHHHHHHHHHHCCCCEEEEeCCCChHHHHHHhhcCCCEEE
Confidence 456778899999999999987765 11 12221 12222 2344456665443 22 2335567788999987
Q ss_pred EE
Q psy17032 211 VA 212 (283)
Q Consensus 211 i~ 212 (283)
+-
T Consensus 86 ~~ 87 (268)
T cd06277 86 VD 87 (268)
T ss_pred Ec
Confidence 64
No 158
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.43 E-value=4.2e+02 Score=23.63 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHH--cCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC---c---hHHHHHHHHcC
Q psy17032 137 EPAFDNSTRQIIIDSLKE--LGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT---L---VPEVVLAKEAG 205 (283)
Q Consensus 137 ~~~~d~~L~~~~~~~a~~--~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me---~---aaea~vA~~~g 205 (283)
..+|...+++-+.+++++ .|+.+. . .. .......+. +.+...++|.+=+. . .+....+...|
T Consensus 10 ~~~~~~~~~~gi~~~a~~~~~g~~~~-~-----~~-~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~g 82 (303)
T cd01539 10 DDTFISLVRKNLEDIQKENGGKVEFT-F-----YD-AKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKN 82 (303)
T ss_pred CChHHHHHHHHHHHHHHhhCCCeeEE-E-----ec-CCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCC
Confidence 456778899999999998 555554 1 12 222222222 33444566644332 1 23456667789
Q ss_pred CcEEEEE
Q psy17032 206 LLYAAVA 212 (283)
Q Consensus 206 v~~~~i~ 212 (283)
+|++.+-
T Consensus 83 iPvV~~~ 89 (303)
T cd01539 83 IPVIFFN 89 (303)
T ss_pred CCEEEeC
Confidence 9988764
No 159
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.30 E-value=4.5e+02 Score=22.26 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeeeeEEEecCCcccCHHHH---HHHHHcCCcEEecC----chHHHHHHHHcCCcE
Q psy17032 136 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT----LVPEVVLAKEAGLLY 208 (283)
Q Consensus 136 ~~~~~d~~L~~~~~~~a~~~g~~~~~~G~~~~~~Gp~fet~aE~---~~~~~~Gad~V~Me----~aaea~vA~~~gv~~ 208 (283)
+..+|-..+.+-+.++++++|+.+. +. ..+ +....+. +.+.+.++|.+=.. .......+.+.|+|+
T Consensus 9 ~~~~~~~~~~~~i~~~a~~~g~~~~----~~-~~~--~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~ipv 81 (267)
T cd06283 9 ITNPFSSLVLKGIEDVCRAHGYQVL----VC-NSD--NDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPV 81 (267)
T ss_pred CccccHHHHHHHHHHHHHHcCCEEE----EE-cCC--CCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCCCE
Confidence 3456778899999999999987764 11 122 2222222 23334444533221 112235567789999
Q ss_pred EEEEE
Q psy17032 209 AAVAM 213 (283)
Q Consensus 209 ~~i~~ 213 (283)
+.+-.
T Consensus 82 V~~~~ 86 (267)
T cd06283 82 VLVDR 86 (267)
T ss_pred EEEcC
Confidence 98854
No 160
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.19 E-value=88 Score=29.50 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCcEEecC--------chHHHHHHHHcCCcEEEEEEeeec
Q psy17032 186 NAHLVNMT--------LVPEVVLAKEAGLLYAAVAMATDY 217 (283)
Q Consensus 186 Gad~V~Me--------~aaea~vA~~~gv~~~~i~~vsd~ 217 (283)
|||=+-+. |.-+|++|+++|+||.+..=.|..
T Consensus 235 GADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTi 274 (346)
T COG0182 235 GADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTI 274 (346)
T ss_pred ccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCcc
Confidence 77777777 467999999999999998877754
No 161
>PF10796 Anti-adapt_IraP: Sigma-S stabilisation anti-adaptor protein ; InterPro: IPR019732 This entry is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions []. ; GO: 0005737 cytoplasm
Probab=20.13 E-value=3.4e+02 Score=20.46 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhccccCChhHHHHHHhhhhhcCcCCCCCCC
Q psy17032 241 EKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQSPQK 282 (283)
Q Consensus 241 ~~~~~ll~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (283)
+...-++..++..+.+......+..+.+|++.+.-+.+.+.+
T Consensus 27 EAleivitALL~~l~~~~~~~~i~~I~~Ai~~a~~~~~~~~~ 68 (87)
T PF10796_consen 27 EALEIVITALLRTLDQGGRQEMIESIEKAIEDASPSSDVPLK 68 (87)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHhcccCCccch
Confidence 345567888888898777778889999999997666555543
Done!