RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17032
(283 letters)
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor;
methylthioadenosine phosphorylase, purine nucleoside
phospho purine salvage, adenine; HET: ADE; 1.70A {Homo
sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A*
1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Length = 283
Score = 415 bits (1068), Expect = e-148
Identities = 159/276 (57%), Positives = 206/276 (74%)
Query: 2 SVSKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKH 61
+ + +KIG IGG+GL++P+ILE E VDTP+G PSD L+ G I+ VDCV+LARHGR+H
Sbjct: 6 TTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQH 65
Query: 62 TINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFF 121
TI PS VNY+ANIWALK GCTHVIV+TA GSL+EEIQPGD+VI+D FIDRT R Q+F+
Sbjct: 66 TIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFY 125
Query: 122 DGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL 181
DGS + GV HIPM F TR+++I++ K+LG + H KGT V IEGPRFSSRAES +
Sbjct: 126 DGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFM 185
Query: 182 FRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVE 241
FR+W A ++NMT VPEVVLAKEAG+ YA++AMATDYDCW++ V V VLKT KEN
Sbjct: 186 FRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENAN 245
Query: 242 KITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSP 277
K L + +P+I + +W+ + LK++ + S + P
Sbjct: 246 KAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLP 281
>3ozb_A Methylthioadenosine phosphorylase;
5'-methylthioinosine,phosphorylase, transferase; HET:
HPA; 2.80A {Pseudomonas aeruginosa}
Length = 259
Score = 393 bits (1012), Expect = e-140
Identities = 79/249 (31%), Positives = 120/249 (48%), Gaps = 4/249 (1%)
Query: 4 SKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTI 63
IGG+GL + L ++ + ++TPYGAPS L +G G + + LARHG H
Sbjct: 14 GMSVYAIIGGTGLTQLEGLTLSESLPIETPYGAPSAPLQRGRYAGREVLFLARHGHPHRF 73
Query: 64 NPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDG 123
P VNYRAN+WALK G VI A G + + G L + ID T R T+F G
Sbjct: 74 PPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAG 133
Query: 124 SENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR 183
V HI +D RQ +I++L+ LG G C +GPR + AE
Sbjct: 134 DI---EHVTHIDFSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLETVAEIARLE 190
Query: 184 SWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKI 243
+V MT +PE LA+E L YA +A+ + + G + +A++ + + + K+
Sbjct: 191 RDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAGKSAGI-ITMAEIEQALHDGIGKV 249
Query: 244 TKLFVHIVP 252
++ ++
Sbjct: 250 REVLARVLA 258
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta
sheet, beta barrel, transferase; HET: MTA; 1.45A
{Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Length = 270
Score = 392 bits (1009), Expect = e-139
Identities = 119/257 (46%), Positives = 153/257 (59%), Gaps = 8/257 (3%)
Query: 5 KIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTIN 64
K IG IGGSGL +P I ++E+ V TPYG PSD + G I L RHGR H I
Sbjct: 7 KASIGIIGGSGLYDPGIFSESKEIKVYTPYGQPSDFITIGKIGNKSVAFLPRHGRGHRIP 66
Query: 65 PSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGS 124
P +NYRANIWALK +G VI +A GSL+ + + GD VI D FID T+ R +FFDG
Sbjct: 67 PHKINYRANIWALKELGVRWVISVSAVGSLRMDYKLGDFVIPDQFIDMTKNREYSFFDGP 126
Query: 125 ENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRS 184
V H+ M F NS R++ I++ KEL K H+ GT +CIEGPRFS+RAES +R
Sbjct: 127 -----VVAHVSMADPFCNSLRKLAIETAKELNIKTHESGTYICIEGPRFSTRAESRTWRE 181
Query: 185 -WNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKI 243
+ A ++ MTLVPEV LA EA + YA +AM TDYD + + V +V + EN EK
Sbjct: 182 VYKADIIGMTLVPEVNLACEAQMCYATIAMVTDYDVFAEIP--VTAEEVTRVMAENTEKA 239
Query: 244 TKLFVHIVPKIAAKDWT 260
KL ++ K+ K
Sbjct: 240 KKLLYALIQKLPEKPEE 256
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase;
HET: ADE; 1.78A {Aeropyrum pernix}
Length = 275
Score = 388 bits (998), Expect = e-137
Identities = 117/258 (45%), Positives = 158/258 (61%), Gaps = 7/258 (2%)
Query: 4 SKIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTI 63
+ +G IGGSGL +P I+EN EV V TPYG PSD ++ G + GV L RHGR H I
Sbjct: 10 VRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDFIVVGDVAGVKVAFLPRHGRGHRI 69
Query: 64 NPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDG 123
P +NYRANIWALK++G VI +A GSL+E+ +PGD V+ D FID T+ R F
Sbjct: 70 PPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTKNRRHYTFYD 129
Query: 124 SENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR 183
+H+ M F RQ +IDS + LG+ H++GT VCIEGPRFS+RAES +++
Sbjct: 130 GP----VTVHVSMADPFCEDLRQRLIDSGRRLGYTVHERGTYVCIEGPRFSTRAESRVWK 185
Query: 184 S-WNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEK 242
+ A ++ MTLVPE+ LA EA L YA +AM TDYD W D V +V + NVE+
Sbjct: 186 DVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDVWADRP--VTAEEVERVMISNVER 243
Query: 243 ITKLFVHIVPKIAAKDWT 260
++ ++PK+A +
Sbjct: 244 ARRMLYDVIPKLAGEPEL 261
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; HET: XAN; 1.64A {Yersinia
pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Length = 287
Score = 112 bits (283), Expect = 9e-30
Identities = 65/271 (23%), Positives = 102/271 (37%), Gaps = 34/271 (12%)
Query: 5 KIKIGFIGGSGLNNPQILENAQEVAVDTPYG-----APSDV------LLQGTIQGVDCVI 53
K +I FI GSGL + L + Y S V L+ G + GV +
Sbjct: 33 KPQIAFILGSGLGD---LVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMC 89
Query: 54 LARHGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFI 110
+ GR H S + + K +GC + + A GSL+ E+ PG +V+L I
Sbjct: 90 MK--GRGHFYEGKGMSIMTN--PVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHI 145
Query: 111 DRTRTRIQTFFD----GSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAV 166
+ T G + G + A+D R + ++L +G V
Sbjct: 146 N-------TMPGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIPLT-EGVFV 197
Query: 167 CIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNK 226
GP F + AE + + +V M++VPEV+ A GL A+ T+ +
Sbjct: 198 SYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNL-AEGLSDVV 256
Query: 227 VCVADVLKTFKENVEKITKLFVHIVPKIAAK 257
+ LK K TKL + A +
Sbjct: 257 LSHEQTLKFAKVASVNFTKLIEAFLKSKALR 287
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase,
transferase, 9-deazaguanine, multisubstrate analogue
inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos
taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A*
2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A*
2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A*
1vfn_A* ...
Length = 284
Score = 109 bits (276), Expect = 8e-29
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 17/263 (6%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
+ ++ I GSGL L AQ + P S V L+ G + G CV++
Sbjct: 24 RPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQ- 82
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H V + + + +G ++V+ A G L + GD++++ I+
Sbjct: 83 -GRFHMYEGYPFWKVTF--PVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLP 139
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPR 172
+ G GV M A+D RQ + K++G + +GT V + GP
Sbjct: 140 GFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPN 199
Query: 173 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW-RDTGNKVCVAD 231
F + AE L R+ A V M+ VPEV++A+ GL ++ T+ ++ K +
Sbjct: 200 FETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEE 259
Query: 232 VLKTFKENVEKITKLFVHIVPKI 254
VL+ K+ +K+ + ++ I
Sbjct: 260 VLEAGKQAAQKLEQFVSLLMASI 282
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin,
transferase-transferase inhibitor complex; HET: IM5;
2.30A {Homo sapiens}
Length = 324
Score = 110 bits (278), Expect = 9e-29
Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 17/267 (6%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
+ ++ I GSGL L AQ + P S V L+ G + G CV++
Sbjct: 59 RPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQ- 117
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H V + + +G ++V+ A G L + + GD++++ I+
Sbjct: 118 -GRFHMYEGYPLWKVTF--PVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLP 174
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPR 172
Q G + G M A+D + RQ + + K++G + +GT V + GP
Sbjct: 175 GFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPS 234
Query: 173 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW-RDTGNKVCVAD 231
F + AE + + A V M+ VPEV++A+ GL ++ T+ ++ K +
Sbjct: 235 FETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEE 294
Query: 232 VLKTFKENVEKITKLFVHIVPKIAAKD 258
VL K+ +K+ + ++ I D
Sbjct: 295 VLAAGKQAAQKLEQFVSILMASIPLPD 321
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed
beta-barrel, hydrolase; 2.38A {Grouper iridovirus}
Length = 285
Score = 108 bits (272), Expect = 3e-28
Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 17/265 (6%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
+ +G + GSGL LE + VA D P V L+ G++ GV CV +
Sbjct: 21 RPVLGIVCGSGLGKIGDSLETSITVAYSDIPNFPVGSVKGHAGSLIFGSVNGVSCVCMK- 79
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H + + + K++G V+++ A G L +PGD +++ I+
Sbjct: 80 -GRFHLYEGHTAARATF--PMRVFKALGVKIVVLTNAAGGLNPSYRPGDFMVVRDHINLP 136
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDK-GTAVCIEGPR 172
G + G M +D + R+ I + +ELG + G C+ GP
Sbjct: 137 GLAGANPLTGPNDDTEGERFPSMTSVYDKTLRKYAISAARELGMSYATHEGVYCCVNGPS 196
Query: 173 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDC-WRDTGNKVCVAD 231
F + AE + R + V M+ PE ++AK G+ AV++ ++ +T + +
Sbjct: 197 FETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSLISNVIASNCETPAEPTHEE 256
Query: 232 VLKTFKENVEKITKLFVHIVPKIAA 256
VL+ +E ++T L ++ KI
Sbjct: 257 VLRAGEEASARMTALVKLVIEKIRG 281
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 108 bits (271), Expect = 5e-28
Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 19/265 (7%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
+IG I GSGL +++ + P + V L+ GT+ G V++
Sbjct: 26 VPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTSVVGHSGNLIFGTLSGRKVVVMQ- 84
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H + V I +K +G ++VS A G L ++ GD VIL I
Sbjct: 85 -GRFHMYEGYSNDTVAL--PIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLP 141
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPR 172
+ G G + A+D R++ + +E GF +G V GP
Sbjct: 142 GLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPC 201
Query: 173 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCV--A 230
+ + AE + + +V M+ +PEVV+A+ G+ AV++ T+ D + +
Sbjct: 202 YETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNI-SVLDVESDLKPNHE 260
Query: 231 DVLKTFKENVEKITKLFVHIVPKIA 255
+VL T + E + F I+ K+
Sbjct: 261 EVLATGAQRAELMQSWFEKIIEKLP 285
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 105 bits (264), Expect = 2e-26
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 19/266 (7%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
+ K+G I GSGL + L + P+ S V L+ G + GV + +
Sbjct: 109 RPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGHVGRLVFGYLAGVPVMCMQ- 167
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H + + + +GCTH+I + A G + + GD++++ I+
Sbjct: 168 -GRFHHYEGYPLAKCAM--PVRVMHLIGCTHLIATNAAGGANPKYRVGDIMLIKDHINLM 224
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPR 172
G + G M +D Q +++G + +G C+ GP
Sbjct: 225 GFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGIENELREGVYTCLGGPN 284
Query: 173 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCV--A 230
F + AE + + M+ V E++ A+ G+ A ++ T+ C +
Sbjct: 285 FETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNM-CTMSYEEEEEHCHD 343
Query: 231 DVLKTFKENVEKITKLFVHIVPKIAA 256
++ K + + + IV I
Sbjct: 344 SIVGVGKNREKTLGEFVSRIVKHIHY 369
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
glycosyltransferase, transferase; 1.80A {Streptococcus
mutans} PDB: 3lba_A*
Length = 303
Score = 103 bits (260), Expect = 3e-26
Identities = 63/265 (23%), Positives = 110/265 (41%), Gaps = 31/265 (11%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
K + G I GSGL + +ENA + D P S V L+ G + G + L
Sbjct: 55 KPEFGLILGSGLGELAEEIENALVLNYADIPNWGRSTVSGHAGKLIYGELAGRKVLALQ- 113
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H + V + I +K++GC +IV+ A G + PG L+ + I+
Sbjct: 114 -GRFHYYEGNSMELVTF--PIRIMKALGCQGLIVTNAAGGI--GFGPGTLMAISDHIN-- 166
Query: 114 RTRIQTFFD----GSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIE 169
G G M A+ R++ ++G K +G + +
Sbjct: 167 -----LTGANPLMGENLDDFGFRFPDMSNAYTADYREVAHQVADKIGIKLD-EGVYIGVS 220
Query: 170 GPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCV 229
GP + + AE F++ A V M+ VPEV++A +GL ++ T+Y +++
Sbjct: 221 GPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAITNYAA--GFQSELNH 278
Query: 230 ADVLKTFKENVEKITKLFVHIVPKI 254
+V+ ++ E L I+ ++
Sbjct: 279 EEVVAVTQQIKEDFKGLVKAILVEL 303
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A
{Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Length = 266
Score = 102 bits (256), Expect = 6e-26
Identities = 46/265 (17%), Positives = 87/265 (32%), Gaps = 39/265 (14%)
Query: 3 VSKIKIGFIGGSGLNNPQILENAQEVAVDTPYG-----APSDV---LLQGTIQGVDCVIL 54
V + + GSG E EV + P + + + ++L
Sbjct: 27 VEGHDMALVLGSGWG--GAAELLGEVVAEVPTHEIPGFSSVTRSIRVERADGSVRHALVL 84
Query: 55 ARHGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFID 111
R H V + + + G +I++ G L +E G V+L I+
Sbjct: 85 G--SRTHLYEGKGVRAVVH--GVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHIN 140
Query: 112 RTRT---RIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCI 168
T TF D + + R++ + +G
Sbjct: 141 LTARSPLEGPTFVD-------------LTDVYSPRLREL----AHRVDPTLP-EGVYAQF 182
Query: 169 EGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVC 228
GP + + AE + A LV M+ E + A+ GL V++ T+ + +
Sbjct: 183 PGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTNL-AAGISPTPLS 241
Query: 229 VADVLKTFKENVEKITKLFVHIVPK 253
A+V++ + +I+ L I +
Sbjct: 242 HAEVIEAGQAAGPRISALLADIAKR 266
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex,
transferase; HET: IMH; 1.75A {Mycobacterium
tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A*
3iom_A*
Length = 268
Score = 101 bits (255), Expect = 8e-26
Identities = 49/269 (18%), Positives = 100/269 (37%), Gaps = 42/269 (15%)
Query: 2 SVSKIKIGFIGGSGLNNPQILENAQEVAVDTPYG-----APSDV------LLQGTIQGVD 50
+ + + + GSG + P P LL I
Sbjct: 24 GIGEHDVAVVLGSGWL--PAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHR 81
Query: 51 CVILARHGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILD 107
++LA GR H + V + + A ++ G ++++ A G L+ ++Q G V++
Sbjct: 82 VLVLA--GRIHAYEGHDLRYVVH--PVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLIS 137
Query: 108 SFIDRTRT---RIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGT 164
++ T F D + A+ R++ ++ + +G
Sbjct: 138 DHLNLTARSPLVGGEFVD-------------LTDAYSPRLREL----ARQSDPQLA-EGV 179
Query: 165 AVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTG 224
+ GP + + AE + ++ A LV M+ V E + A+ AG V++ T+ TG
Sbjct: 180 YAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNL-AAGITG 238
Query: 225 NKVCVADVLKTFKENVEKITKLFVHIVPK 253
+ A+VL + ++ L ++ +
Sbjct: 239 EPLSHAEVLAAGAASATRMGALLADVIAR 267
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics
protein structure initiative, PSI, joint center for
structu genomics; HET: GUN; 2.01A {Thermotoga maritima}
SCOP: c.56.2.1
Length = 277
Score = 100 bits (251), Expect = 3e-25
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 25/260 (9%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAV-DTPYGAPSDV------LLQGTIQGVDCVILAR 56
I I GSG + +E+ + D P+ V L+ G I +I+A
Sbjct: 31 SPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISDKPVMIMA- 89
Query: 57 HGRKHT---INPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRT 113
GR H +P+ V + ++ K VG V+V+ A G++ E +PG+++++ I+
Sbjct: 90 -GRFHLYEGHDPATVAF--PVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDIINFM 146
Query: 114 RTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF 173
G + G M D + I + +G + + GP +
Sbjct: 147 FRNPLR---GPNDEKIGPRFPDMSSVVDPEWARKI-----QERLSLK-EGVYIGVLGPSY 197
Query: 174 SSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVL 233
+ AE +F A LV M+ VPEV+ AK GL + T+ T ++ +V+
Sbjct: 198 ETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNM-AAGITHGRLSHEEVV 256
Query: 234 KTFKENVEKITKLFVHIVPK 253
+T K KI K V
Sbjct: 257 RTTKMAQGKIEKALTTAVEV 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 108/303 (35%)
Query: 12 GGSGLNNPQILENAQEVAVDT------PYGA----------PSDVL--LQGTIQGVDCVI 53
GSG + A +V + + P VL LQ + +D
Sbjct: 159 LGSG---KTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 54 LARHGRKHTINPSNVNYRANIW--ALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFID 111
+R SN+ R + L+ + L+ + L++L +
Sbjct: 214 TSRSDH-----SSNIKLRIHSIQAELRRL-------------LKSKPYENCLLVLL---N 252
Query: 112 -RTRTRIQTFFDGSENSPNGVLHIPMEPAFDNS------TRQI-IIDSLKELGFKFHDKG 163
+ AF+ S TR + D L
Sbjct: 253 VQNAKAWN--------------------AFNLSCKILLTTRFKQVTDFLSA------ATT 286
Query: 164 TAVCIEGPRFS-SRAES-NLFRSWNAHLVNMTL--VPEVVLAKEAGLLYAAVA-----MA 214
T + ++ + + E +L + ++ +P VL + +A
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVL-TTNPRRLSIIAESIRDGL 341
Query: 215 TDYDCWRDTGN-------KVCVADVLKT--FKENVEKITKLF---VHIVPKIAAKDWTNE 262
+D W+ + + +VL+ +++ ++++ +F HI + + W +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDV 399
Query: 263 ITE 265
I
Sbjct: 400 IKS 402
Score = 37.9 bits (87), Expect = 0.003
Identities = 37/234 (15%), Positives = 71/234 (30%), Gaps = 59/234 (25%)
Query: 40 VLLQGTIQGVDCVILARHGRKHTIN-PSNVNYRANIWALKSVGCTHVIVSTATGSLQEEI 98
V + DC K + P ++ L H+I+S ++ +
Sbjct: 24 VFEDAFVDNFDC--------KDVQDMPKSI--------LSKEEIDHIIMS------KDAV 61
Query: 99 QPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGF- 157
G L + + + + +Q F + L M P RQ S+ +
Sbjct: 62 S-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSP-IKTEQRQ---PSMMTRMYI 113
Query: 158 KFHDKGTAVCIEGPRFS----SRAESNLFRSWNAHLVNMTLVPEVVLAKEAG----LLYA 209
+ D+ + + F+ SR + + L+ + V++ G +
Sbjct: 114 EQRDR---LYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 210 AVAMATDYDC-------WRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 256
V ++ C W + N VL E + KL I P +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTS 215
Score = 29.4 bits (65), Expect = 1.8
Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 43/124 (34%)
Query: 96 EEIQPGDLVILD-SFIDRTRTRIQTFFDGS-ENSPNGVL-----------HI-PMEPAFD 141
E + +V LD F+++ +I+ D + N+ +L +I +P ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQ---KIRH--DSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 142 NSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV-VL 200
+++++ + F + E NL S L+ + L+ E +
Sbjct: 543 R-----LVNAILD------------------FLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 201 AKEA 204
+EA
Sbjct: 580 FEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 47/156 (30%)
Query: 136 MEPAFDNSTRQIIIDSLKELGFKFHDKG--------TAVCIEGPRFSSRAESNLFRSWNA 187
+ + S I+I++ L F + +A+ E +F+ N
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 188 HLVNMTLVPEVVLAKEAGLLYA---------AVAMATDYDCWRDTGNK------------ 226
H + T E GLL A + A ++ + G
Sbjct: 1713 HSTSYTFRSE------KGLLSATQFTQPALTLMEKAA-FEDLKSKGLIPADATFAGHSLG 1765
Query: 227 -----VCVADVLKTFKENVEKIT----KLFVHIVPK 253
+ADV+ + + V ++ VP+
Sbjct: 1766 EYAALASLADVM-SIESLV-EVVFYRGMTMQVAVPR 1799
Score = 33.5 bits (76), Expect = 0.091
Identities = 32/240 (13%), Positives = 65/240 (27%), Gaps = 76/240 (31%)
Query: 73 NIWALKSVGCTHVIVSTATGSLQEEIQ-PGDLVIL-----DSFIDRTRTRIQTFFDGSEN 126
+ ++ + + +H GSL+ + P + + F + F +++
Sbjct: 2 DAYSTRPLTLSH-------GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGF--AADD 52
Query: 127 SPNGVLHI----------PMEPAFDNSTRQIIIDSLKELGFKF------H--------DK 162
P + +EP+ Q++ L E + H +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 163 GT--------------AVCIEGPRFSSRAESNLFRSWNAHLVNMTLV------PEVVLAK 202
T A + F ++ S LFR+ + + + +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-E 171
Query: 203 EAGL--LYAAVAMATDYDCW-RDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDW 259
E L LY Y D A+ L K+F + +W
Sbjct: 172 E--LRDLY------QTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQ---GLNILEW 218
Score = 31.9 bits (72), Expect = 0.26
Identities = 39/226 (17%), Positives = 61/226 (26%), Gaps = 100/226 (44%)
Query: 96 EEIQPGDL-----VILDSFIDRTRTRIQTFFDGSENS----PNGV-----LHIP-MEPAF 140
EE++ DL V++ I + + + ++ G+ L P P
Sbjct: 171 EELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 141 DN------STRQIIIDSL-------KELG-----FKFHDKGTAVCIEGPRFSSRAESNLF 182
D S I + L K LG + + KG +G
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG------------ 276
Query: 183 RSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEK 242
+V A A+A W F +V K
Sbjct: 277 ---------------LVTA-------VAIAETDS---WES-------------FFVSVRK 298
Query: 243 -ITKLFVHI-------VPKIAAKDWTNEITELKSVVETSNMSPQSP 280
IT LF I P + + L+ +E + P SP
Sbjct: 299 AITVLF-FIGVRCYEAYPNTSL-----PPSILEDSLENNEGVP-SP 337
Score = 28.1 bits (62), Expect = 4.0
Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 89/191 (46%)
Query: 19 PQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARH---------GRKHTINPSNVN 69
P ILE++ E G PS +L +I + + + K + S VN
Sbjct: 321 PSILEDSLENNE----GVPSPML---SISNLTQEQVQDYVNKTNSHLPAGKQ-VEISLVN 372
Query: 70 YRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFI---------DRTRT----- 115
G +++V +G P L L+ + D++R
Sbjct: 373 -----------GAKNLVV---SGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 116 --RIQT-F-----------------------------FDGSENSPNGVLHIPMEPAFDNS 143
+ F F+ + + IP+ FD S
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD------IQIPVYDTFDGS 466
Query: 144 TRQIIIDSLKE 154
+++ S+ E
Sbjct: 467 DLRVLSGSISE 477
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT;
1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A*
1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A*
Length = 234
Score = 34.8 bits (80), Expect = 0.020
Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 31/191 (16%)
Query: 75 WALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHI 134
L+ +I + + G L ++ GD+V+ D D +
Sbjct: 63 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEA-------RYHDADVTAFGYEYGQLP 115
Query: 135 PMEPAF--DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM 192
F D+ + EL +G + G F + + +
Sbjct: 116 GCPAGFKADDKLIAAAEACIAELNLNAV-RGL--IVSGDAFINGSV--GLAKIRHNFPQ- 169
Query: 193 TLVPEVVLAKE---AGLLYAAVAMATDYDCWR---DTGNKVCVADVLKTFKENVEKITKL 246
+A E + + + R D ++ +F E + K
Sbjct: 170 ------AIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQ----QSHLSFDEFLAVAAKQ 219
Query: 247 FVHIVPKIAAK 257
+V + K
Sbjct: 220 SSLMVESLVQK 230
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter
pylori} PDB: 3nm5_A* 3nm4_A*
Length = 230
Score = 34.3 bits (79), Expect = 0.026
Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 44/193 (22%)
Query: 76 ALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSE-NSPNGVLHI 134
+ + G V+ S GSL ++++ DL++ +Q D S + P G I
Sbjct: 64 MILAFGVQKVLFSGVAGSLVKDLKINDLLVATQL-------VQHDVDLSAFDHPLGF--I 114
Query: 135 PMEPAF---DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF--SSRAESNLFRSWNAHL 189
P F S + E +G G +F S + L + A
Sbjct: 115 PESAIFIETSGSLNALAKKIANEQHIALK-EGV--IASGDQFVHSKERKEFLVSEFKASA 171
Query: 190 VNMTLVPEVVLAKEAGLLYAAVAM-ATDYD----CWR---DTGNKVCVADVLKTFKENVE 241
V M E A+VA + R D ++ +F E +E
Sbjct: 172 VEM----------EG----ASVAFVCQKFGVPCCVLRSISDNADE----KAGMSFDEFLE 213
Query: 242 KITKLFVHIVPKI 254
K + +
Sbjct: 214 KSAHTSAKFLKSM 226
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold,
hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP:
c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Length = 484
Score = 34.6 bits (79), Expect = 0.032
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 18/117 (15%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L + ++ G L+E GD V+ +++ + IP+
Sbjct: 292 LAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHV-LDAVLPPD---------IPI 341
Query: 137 EPAFD------NSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNA 187
+ ++T+ + +E+ + GT V R S +N
Sbjct: 342 PSIAEVQRALYDATKLVSGRPGEEVKQRLR-TGT-VVTTDDRNWELRYSASALRFNL 396
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN, alpha and beta proteins, hydrolase;
HET: FMC; 1.70A {Staphylococcus aureus}
Length = 230
Score = 33.9 bits (78), Expect = 0.036
Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 41/196 (20%)
Query: 75 WALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFI--DRTRTRIQTFFDGSENSPNGVL 132
+ +I + + G+L E + GD++I D D T +
Sbjct: 62 LLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADAT-------AFGYEYGQIP 114
Query: 133 HIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF-SSRAESNLFRS--WNAHL 189
+P+ + + +++ G + G F S + + NA
Sbjct: 115 QMPVAFQSSKPLIEKVSQVVQQQQLTAK-VGL--IVSGDSFIGSVEQRQKIKKAFPNAMA 171
Query: 190 VNMTLVPEVVLAKEAGLLYAAVAM-ATDYD----CWR---DTGNKVCVADVLKTFKENVE 241
V M EA A+A ++ R D N + +F+ +E
Sbjct: 172 VEM----------EA----TAIAQTCYQFNVPFVVVRAVSDLANG----EAEMSFEAFLE 213
Query: 242 KITKLFVHIVPKIAAK 257
K V + ++
Sbjct: 214 KAAVSSSQTVEALVSQ 229
>1ybf_A AMP nucleosidase; structural genomics, protein structure
initiative, PSI, NEW research center for structural
genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron}
SCOP: c.56.2.1
Length = 268
Score = 33.3 bits (76), Expect = 0.074
Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 22/145 (15%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L ++ VI G L+ E GD ++ + I T + +P
Sbjct: 83 LWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEGT-SNDYLPEE---------VPS 132
Query: 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES--NLFRSWNAHLVNM-- 192
P+F + I +++ G + GT V R E + RS +A V+M
Sbjct: 133 LPSFS--VLRAISSAIQNKGKDYW-TGT-VYTTNRRVWEYDEKFKDYLRSTHASGVDMET 188
Query: 193 -TLVPEVVLAKEAGLLYAAVAMATD 216
TL + + + A+ + +D
Sbjct: 189 ATL---MTVGFANKIPMGALLLISD 210
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase;
transition state, inhibitor, hydrolase; HET: MTM; 1.60A
{Streptococcus pneumoniae R6} PDB: 3mms_A*
Length = 230
Score = 32.9 bits (75), Expect = 0.084
Identities = 39/228 (17%), Positives = 69/228 (30%), Gaps = 47/228 (20%)
Query: 43 QGTIQGVDCVILARHGRKHTINPSNVNYRANI-WALKSVGCTHVIVSTATGSLQEEIQPG 101
GTI + V+L G V ++ +I + + G++ E I G
Sbjct: 35 TGTIASHE-VVLVESG------IGKVMSAMSVAILADHFQVDALINTGSAGAVAEGIAVG 87
Query: 102 DLVILDSFI--DRTRTRIQTFFDGSENSPNGVLHIPMEPAF---DNSTRQIIIDSLKELG 156
D+VI D D T + + +P + D + I +SL +L
Sbjct: 88 DVVIADKLAYHDVDVTAFGYAYG----------QMAQQPLYFESDKTFVAQIQESLSQLD 137
Query: 157 FKFHDKGTAVCIEGPRF-SSRAESNLFRS--WNAHLVNMTLVPEVVLAKE-AGLLYAAVA 212
+H + G F + + +S V M E A + AA
Sbjct: 138 QNWH---LGLIATGDSFVAGNDKIEAIKSHFPEVLAVEM----------EGAAIAQAAHT 184
Query: 213 MATDYDCWR---DTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 257
+ R D N + F E + + + ++
Sbjct: 185 LNLPVLVIRAMSDNANH----EANIFFDEFIIEAGRRSAQVLLAFLKA 228
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex,
hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB:
2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Length = 267
Score = 32.4 bits (73), Expect = 0.11
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 37/186 (19%)
Query: 75 WALKSVGCTHVI-VSTATGSLQEEIQPGDLVILDSFIDR-TRTRIQTFFDGSENSPNGVL 132
+++++ +I T G + GD+ ++ + R I F
Sbjct: 101 ASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIPMFDLY--------- 151
Query: 133 HIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF-SSRAESNLFRSWNAHLVN 191
+ + AF + LKEL K G S + L + +A L +
Sbjct: 152 GVGLRQAFS------TPNLLKELNLKIG-----RLSTGDSLDMSTQDETLIIANDATLKD 200
Query: 192 MTLVPEVVLAKEAGLLYAAVAMATDYDCWR---DTGNKVCVADVLKTFKENVEKITKLFV 248
M + A + Y A + + D + + F +N+ +T
Sbjct: 201 M---------EGAAVAYVADLLKIPVVFLKAVTDLVDG--DKPTAEEFLQNLTVVTAALE 249
Query: 249 HIVPKI 254
K+
Sbjct: 250 GTATKV 255
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B
3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B
3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Length = 103
Score = 30.7 bits (69), Expect = 0.14
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 69 DAVTYTEHAKRKTVTAMDVVY-----ALKRQGRT 97
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA
binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1
PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Length = 84
Score = 30.2 bits (68), Expect = 0.17
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 50 DAVTYTEHAKRKTVTAMDVVY-----ALKRQGRT 78
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone
chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl
y-1140}
Length = 103
Score = 30.0 bits (67), Expect = 0.29
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 69 DAVTYTEHAKRKTVTSLDVVY-----ALKRQGRT 97
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein,
transferase; 1.60A {Sulfolobus solfataricus} SCOP:
c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A
1je1_A* 1jp7_A 1jpv_A
Length = 236
Score = 30.5 bits (69), Expect = 0.44
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L +G I TG+L I G+ +I+ F+ ++ +
Sbjct: 76 LAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGG---LFYQYLRDNA----CVAS 128
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
P F+ + + ++ S + K++
Sbjct: 129 TPDFELTNK--LVTSFSKRNLKYY 150
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA
interaction, nucleoprotein, supercoiled DNA; 3.10A
{Saccharomyces cerevisiae} SCOP: a.22.1.1
Length = 102
Score = 29.2 bits (65), Expect = 0.46
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 68 DSVTYTEHAKRKTVTSLDVVY-----ALKRQGRT 96
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.4 bits (69), Expect = 0.47
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 42 LQGTIQGVDCVILARHGRKHTINPSNVNYRAN---IWALKSVGCTHVIVSTATGSLQE 96
+ T+ G D VI+ G ++ ++P+ V + A+K+ G V+ T+ L +
Sbjct: 61 VDKTVAGQDAVIVL-LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWD 117
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A
single chain of CSE4+SCM3+H4, fusion protein; NMR
{Saccharomyces cerevisiae}
Length = 235
Score = 30.4 bits (67), Expect = 0.51
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 201 DSVTYTEHAKRKTVTSLDVVY-----ALKRQGRT 229
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm,
glycosyltransferase; 1.50A {Salmonella typhimurium} PDB:
1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A
1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A*
3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ...
Length = 253
Score = 30.1 bits (68), Expect = 0.58
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 12/84 (14%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L +G + TG++Q I GD+++ + + F E
Sbjct: 81 LAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGAS--LHFAPME----------F 128
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
D + ++++ K +G H
Sbjct: 129 PAVADFACTTALVEAAKSIGATTH 152
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica}
PDB: 3tl6_A*
Length = 242
Score = 30.2 bits (68), Expect = 0.67
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 17/122 (13%)
Query: 44 GTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDL 103
G +GV + + HG + ++ A G +I + G+ E ++ GD+
Sbjct: 59 GYYKGVK-LSVQAHG----MGMPSIGIYAYE-LFNFYGVKRIIRIGSAGAFDESLKLGDI 112
Query: 104 VILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKG 163
VI + + D + +D+ ++LG+++
Sbjct: 113 VIGMGAC---------YDSNF--ERQYDIPGKYSCIADFQLCREAVDAAEKLGYRYKVGN 161
Query: 164 TA 165
Sbjct: 162 IY 163
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase,
riken structural genomics/proteomics initiative, RSGI;
1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A*
1odi_A 1odl_A
Length = 235
Score = 29.7 bits (67), Expect = 0.76
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L +G ++ G+ ++ PG+L++ + + + +G +P +P
Sbjct: 77 LVRLGARVLVRVGTAGAASSDLAPGELIVAQGAV-PLDGTTRQYLEGRPYAP-----VPD 130
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
F + + LG+
Sbjct: 131 PEVFRA-----LWRRAEALGYPHR 149
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 29.7 bits (66), Expect = 0.80
Identities = 18/159 (11%), Positives = 38/159 (23%), Gaps = 17/159 (10%)
Query: 28 VAVDTPYGAPSD--------VLLQG------TIQGVDCVILARHGRKHTINPSNVNYRAN 73
+AVD P+G S+ +L+ + V + + +
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYF--- 57
Query: 74 IWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLH 133
W + + + + L I T + +
Sbjct: 58 YWLCRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDV 117
Query: 134 IPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPR 172
I R + K + + + V + GP
Sbjct: 118 ITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPE 156
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside
phosphorylase I (NP-I) family, transferase; HET: ADN
GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A*
1xe3_A 3uay_A* 3uaz_A*
Length = 235
Score = 28.6 bits (64), Expect = 1.8
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
++S G ++I G++Q++++ D++I + +
Sbjct: 77 IQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACT---------DSNM--NRLTFPGFDF 125
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
PA + + D+ E G
Sbjct: 126 APAANFDLLKKAYDAGTEKGLHVR 149
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase;
HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB:
1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A*
1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A*
1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...
Length = 253
Score = 28.7 bits (64), Expect = 1.8
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 17/117 (14%)
Query: 44 GTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDL 103
GT +G + + HG + + + +K G +I + G++ E I+ D+
Sbjct: 53 GTYKGRR-ISVMGHG----MGIPSCSIYVTE-LIKDYGVKKIIRVGSCGAVNEGIKVRDV 106
Query: 104 VILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH 160
VI ++ + D + ++ K G
Sbjct: 107 VIGMGACTDSKV-----------NRIRFKDHDFAAIADYKMVKAAEEAAKARGIDVK 152
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 28.8 bits (64), Expect = 1.8
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 229 VADVLKTFKENVEKITKLFVHIVPKIAAKDW---TNEITELKSVVETSNMSPQ 278
D L + KE +K + ++ I+ KI + +E+T + ++E + MS
Sbjct: 153 GQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDG 205
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich,
transferase; HET: 2FD; 2.40A {Trichomonas vaginalis}
PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A*
2i4t_A* 2isc_A*
Length = 235
Score = 28.2 bits (63), Expect = 2.6
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
+ +I G++ +I D+VI S ++ F D P
Sbjct: 77 YSTYKVKTIIRVGTCGAIDMDIHTRDIVIFTSAGTNSKINRIRFMDHD---------YPA 127
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
++D+ KEL
Sbjct: 128 TA--SFDVVCALVDAAKELNIPAK 149
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria
meningitidis serogroup B}
Length = 233
Score = 28.1 bits (63), Expect = 2.8
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 43 QGTIQGVDCVILARHGRKHTINPSNVNYRANI-WALKSVGCTHVIVSTATGSLQEEIQPG 101
+G + G ++LA G VN W ++ VI + + G L + ++ G
Sbjct: 38 EGELAGKR-MVLALSG------IGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVG 90
Query: 102 DLVILDSFIDR 112
D+VI
Sbjct: 91 DVVIGTETAHH 101
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Length = 274
Score = 28.3 bits (63), Expect = 3.0
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 84 HVIVSTATGSLQEEIQPGDLVILDSFID---RTRTRIQTFFDGSENSPNGVLHIP 135
++ +++ + Q + ++ + RT I+ F E GV++
Sbjct: 191 YLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQFGDFELVEPGVVYTA 245
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 27.5 bits (62), Expect = 3.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 71 RANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILD 107
+ NI K+ ++ A ++ DLV LD
Sbjct: 71 QDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 28.0 bits (62), Expect = 3.7
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 13 GSGLNNPQILENAQEVAVDTPYGAPSDV-LLQGTIQGVDCVILARHGRKHTINPSNVNYR 71
S ++ Q+L +++ + D L ++ VD VI A G ++ +
Sbjct: 40 VSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAGG--VLSHHILEQL 97
Query: 72 ANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTR 116
+ A+K G + + G + ++ +FID+ + R
Sbjct: 98 KLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVR 142
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Thermotoga maritima}
Length = 381
Score = 27.9 bits (63), Expect = 3.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 35 GAPSDVLLQGTIQGV---DCVILARHGR 59
G+P +L+ +GV D V R R
Sbjct: 256 GSPEL-ILELVDRGVDMFDSVFPTRIAR 282
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
metal-binding, queuosine biosynthesis, tRNA processing;
HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A*
1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A*
1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A*
1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Length = 386
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 35 GAPSDVLLQGTIQGV---DCVILARHGR 59
G P D ++ +G+ DCV+ R GR
Sbjct: 263 GKPDD-IVGAVERGIDMFDCVLPTRSGR 289
>3tyg_A Envelope glycoprotein GP160; GP120, HIV-1, ENV, FAB, HIV-1
neutralizing antibody, immune viral protein; HET: NAG
BMA MAN; 3.25A {Human immunodeficiency virus 1}
Length = 199
Score = 27.4 bits (61), Expect = 4.4
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 79 SVGCTHVIVSTA---TGSLQEEIQPGDLVIL-DSFIDRTRTRI 117
+VST GSL EE ++VI +F D ++
Sbjct: 50 RCQIAGTVVSTQLLLNGSLAEE----EVVIRSVNFTDNAKSIC 88
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 27.9 bits (62), Expect = 4.4
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 114 RTRIQTFFDGSENSPNGVLHIP----ME--PAFDNS-TRQIIIDSLKELGFKFHDK 162
R ++ + +++ P +E P F S + I + L + + D
Sbjct: 102 DPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDI 157
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI,
protein structure initiative, MCSG glucosidase,
NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis}
SCOP: c.2.1.5 d.162.1.2
Length = 472
Score = 27.4 bits (60), Expect = 5.3
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 1 MSVSKIKIGFIGGSGLNNPQILEN 24
M I GG P I+
Sbjct: 24 MKKKSFSIVIAGGGSTFTPGIVLM 47
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae
5'-methylthioadenosine/S-adenosyl homocystei
nucleosidase, butylthio dadme immucillin A, MTAN,
hydrolase; HET: BIG; 2.30A {Vibrio cholerae}
Length = 231
Score = 27.4 bits (61), Expect = 5.5
Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 52/231 (22%)
Query: 43 QGTIQGVDCVILARHGRKHTINPSNVNYRANI-WALKSVGCTHVIVSTATGSLQEEIQPG 101
G IQGVD V+L + G V+ + VI + + G + G
Sbjct: 35 SGQIQGVD-VVLLQSG------IGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVG 87
Query: 102 DLVILDSFIDR-TRTRIQTFFDGSENSPNGVLHIPMEPAF---DNSTRQIIIDSLKELGF 157
D+VI + G + +PA D + +L +L
Sbjct: 88 DVVISSEVRHHDADVTAFGYEIG---------QMAGQPAAFKADEKLMTVAEQALAQLPN 138
Query: 158 KFHDKGTAVCIEGPRF-SSRAESNLFRSW--NAHLVNMTLVPEVVLAKEAGLLYAAVAMA 214
+G G F + R + V M EA +A+A
Sbjct: 139 THAVRGL--ICTGDAFVCTAERQQFIRQHFPSVVAVEM----------EA----SAIAQT 182
Query: 215 -----TDYDCWR---DTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 257
+ R D +K + +F+E + K +V K+
Sbjct: 183 CHQFKVPFVVVRAISDVADK----ESPLSFEEFLPLAAKSSSAMVLKMVEL 229
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine
salvage pathway, uridi phosphorylase, transition state;
HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}
Length = 282
Score = 26.8 bits (59), Expect = 8.4
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
LK G I G ++ +++ GD+VI I T + E
Sbjct: 107 LKLCGADTFIRVGTCGGIELDVKGGDIVIATGAIRMEGTS--KEYAPIE----------F 154
Query: 137 EPAFDNSTRQIIIDSLKELGFKFH 160
D ++++ K+LG+ H
Sbjct: 155 PAVADLEVTNALVNAAKKLGYTSH 178
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 26.7 bits (59), Expect = 8.6
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 136 ME--PAFDNS-TRQIIIDSLKELGFKFHDK 162
+E F+ S TR ++I +++ GF++ +
Sbjct: 117 LENVKGFEVSSTRDLLIQTIENCGFQYQEF 146
>3td9_A Branched chain amino acid ABC transporter, peripl amino
acid-binding protein; leucine binding, structural
genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Length = 366
Score = 26.8 bits (60), Expect = 8.6
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAP 37
+ G G + P+++E E +
Sbjct: 229 FTGYILAGDGADAPELIEIGGEAVEGLLFTTH 260
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 26.8 bits (60), Expect = 9.0
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 129 NGVLHIPMEPAFDNS-----TRQIIIDSLKELGFKFHDK 162
G L P+ D+ TR+ +I K L ++
Sbjct: 187 EGKLI---TPSLDSGILDGITRENVIKLAKSLEIPVEER 222
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 26.6 bits (59), Expect = 9.9
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 17 NNPQILENAQEVAVDTPYGAPSD--VLLQGTIQGVDCVILARHGRKHTI---------NP 65
+ + + + +G P+ L + ++G VI+ TI +
Sbjct: 144 EDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDE 203
Query: 66 -----SNVNYRANIWALKSVGCTHVIVSTATGSL---QEEIQPGDLVILDSFIDRTRTRI 117
+ NI L+ G VI + + + + + TR
Sbjct: 204 SVRIIAEAERYENIEQLRMAGADQVISPFVISGRLMSRSIDDGYEAMFVQDVLAEESTRR 263
Query: 118 QTFFDGSENSP 128
E S
Sbjct: 264 MVEVPIPEGSK 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,278,208
Number of extensions: 258639
Number of successful extensions: 1032
Number of sequences better than 10.0: 1
Number of HSP's gapped: 998
Number of HSP's successfully gapped: 80
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)