RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17032
(283 letters)
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 248 bits (633), Expect = 8e-83
Identities = 159/272 (58%), Positives = 204/272 (75%)
Query: 6 IKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINP 65
+KIG IGG+GL++P+ILE E VDTP+G PSD L+ G I+ VDCV+LARHGR+HTI P
Sbjct: 2 VKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMP 61
Query: 66 SNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSE 125
S VNY+ANIWALK GCTHVIV+TA GSL+EEIQPGD+VI+D FIDRT R Q+F+DGS
Sbjct: 62 SKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSH 121
Query: 126 NSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSW 185
+ GV HIPM F TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W
Sbjct: 122 SCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTW 181
Query: 186 NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITK 245
A ++NMT VPEVVLAKEAG+ YA++AMATDYDCW++ V V VLKT KEN K
Sbjct: 182 GADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKS 241
Query: 246 LFVHIVPKIAAKDWTNEITELKSVVETSNMSP 277
L + +P+I + +W+ + LK++ + S + P
Sbjct: 242 LLLTTIPQIGSTEWSETLHNLKNMAQFSVLLP 273
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 266
Score = 216 bits (551), Expect = 2e-70
Identities = 121/254 (47%), Positives = 157/254 (61%), Gaps = 8/254 (3%)
Query: 5 KIKIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTIN 64
K IG IGGSGL +PQIL N +E+ V TPYG PSD ++ G ++G L RHGR H I
Sbjct: 2 KASIGIIGGSGLYDPQILTNVKEIKVYTPYGEPSDNIILGELEGRKVAFLPRHGRGHRIP 61
Query: 65 PSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGS 124
P +NYRANIWALKS+G VI +A GSL+ + +PGD V+ + FID T+ R TFFD
Sbjct: 62 PHKINYRANIWALKSLGVKWVIAVSAVGSLRLDYKPGDFVVPNQFIDMTKGRTYTFFD-- 119
Query: 125 ENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLF-R 183
V H+ M F R II+DS K+LG HDKGT +CIEGPRFS+RAES ++
Sbjct: 120 ---GPTVAHVSMADPFCEHLRSIILDSAKDLGITTHDKGTYICIEGPRFSTRAESIVWKE 176
Query: 184 SWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKI 243
+ A ++ MTLVPEV LA EA + Y+ + M TDYD + D V +V K EN K+
Sbjct: 177 VFKADIIGMTLVPEVNLACEAEMCYSVIGMVTDYDVFADI--PVTAEEVTKVMAENTAKV 234
Query: 244 TKLFVHIVPKIAAK 257
KL ++ ++ K
Sbjct: 235 KKLLYEVIRRLPEK 248
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 195 bits (497), Expect = 4e-62
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 11/260 (4%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILAR 56
+ ++ I GSGL L AQ P + L+ G + G CV++
Sbjct: 24 RPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQG 83
Query: 57 HGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTR 116
+ P + + +G ++V+ A G L + GD++++ I+
Sbjct: 84 RFHMYEGYPFW-KVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFS 142
Query: 117 IQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSS 175
+ G GV M A+D RQ + K++G + +GT V + GP F +
Sbjct: 143 GENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFET 202
Query: 176 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWR-DTGNKVCVADVLK 234
AE L R+ A V M+ VPEV++A+ GL ++ T+ ++ K +VL+
Sbjct: 203 VAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDTESQGKANHEEVLE 262
Query: 235 TFKENVEKITKLFVHIVPKI 254
K+ +K+ + ++ I
Sbjct: 263 AGKQAAQKLEQFVSLLMASI 282
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 171 bits (434), Expect = 6e-53
Identities = 47/263 (17%), Positives = 97/263 (36%), Gaps = 32/263 (12%)
Query: 3 VSKIKIGFIGGSGLNNPQILENAQEVAVDTPYG------APSDVLLQG-----TIQGVDC 51
+ + + + GSG + P P+ G I
Sbjct: 19 IGEHDVAVVLGSGWL--PAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRV 76
Query: 52 VILARHGRKHTINPSNVNY-RANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFI 110
++L GR H ++ Y + A ++ G ++++ A G L+ ++Q G V++ +
Sbjct: 77 LVL--AGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHL 134
Query: 111 DRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEG 170
+ T G + + A+ R++ S +G + G
Sbjct: 135 NLTARS----------PLVGGEFVDLTDAYSPRLRELARQS-----DPQLAEGVYAGLPG 179
Query: 171 PRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVA 230
P + + AE + ++ A LV M+ V E + A+ AG V++ T+ TG + A
Sbjct: 180 PHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAG-ITGEPLSHA 238
Query: 231 DVLKTFKENVEKITKLFVHIVPK 253
+VL + ++ L ++ +
Sbjct: 239 EVLAAGAASATRMGALLADVIAR 261
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermotoga maritima [TaxId: 2336]}
Length = 265
Score = 164 bits (416), Expect = 3e-50
Identities = 58/256 (22%), Positives = 97/256 (37%), Gaps = 21/256 (8%)
Query: 5 KIKIGFIGGSGLNN-PQILENAQEVAVDTPYGAP-------SDVLLQGTIQGVDCVILAR 56
I I GSG + +E+ + P S L+ G I +I
Sbjct: 19 SPDILIILGSGFGPFIEKVEDPVIIDYKDIPHFPQPTVEGHSGKLVFGRISDKPVMI--M 76
Query: 57 HGRKHTINPSNVNY-RANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRT 115
GR H + ++ K VG V+V+ A G++ E +PG+++++ I+
Sbjct: 77 AGRFHLYEGHDPATVAFPVYLAKYVGVKGVVVTNAAGAINPEFKPGEIILVRDIINFMFR 136
Query: 116 RIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS 175
+ + G M D + I + L +G + + GP + +
Sbjct: 137 NPLRGPN---DEKIGPRFPDMSSVVDPEWARKIQERLS------LKEGVYIGVLGPSYET 187
Query: 176 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKT 235
AE +F A LV M+ VPEV+ AK GL + T+ G ++ +V++T
Sbjct: 188 PAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAAGITHG-RLSHEEVVRT 246
Query: 236 FKENVEKITKLFVHIV 251
K KI K V
Sbjct: 247 TKMAQGKIEKALTTAV 262
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 149 bits (377), Expect = 3e-44
Identities = 44/259 (16%), Positives = 84/259 (32%), Gaps = 25/259 (9%)
Query: 2 SVSKIKIGFIGGSGLNNPQILENAQEVAVDTPYG------APSDVLLQGTIQGVDCVILA 55
V + + GSG E EV + P + + + G L
Sbjct: 26 GVEGHDMALVLGSGWGG--AAELLGEVVAEVPTHEIPGFSSVTRSIRVERADGSVRHALV 83
Query: 56 RHGRKHTINPSNVNY-RANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTR 114
R H V + + G +I++ G L +E G V+L I+ T
Sbjct: 84 LGSRTHLYEGKGVRAVVHGVRTAAATGAETLILTNGCGGLNQEWGAGTPVLLSDHINLTA 143
Query: 115 TRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS 174
+ G + + + + + + +G GP +
Sbjct: 144 ----------RSPLEGPTFVDLTDVY----SPRLRELAHRVD-PTLPEGVYAQFPGPHYE 188
Query: 175 SRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLK 234
+ AE + A LV M+ E + A+ GL V++ T+ + + A+V++
Sbjct: 189 TPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTNLAAG-ISPTPLSHAEVIE 247
Query: 235 TFKENVEKITKLFVHIVPK 253
+ +I+ L I +
Sbjct: 248 AGQAAGPRISALLADIAKR 266
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine
nucleosidase {Escherichia coli [TaxId: 562]}
Length = 230
Score = 47.6 bits (112), Expect = 5e-07
Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 32/255 (12%)
Query: 7 KIGFIGGSGLNNPQILENAQEVAVDTPYGAPSDVLLQGTIQGVDCVILARHGRKHTINPS 66
KIG IG + + + + G + G + G + +L K
Sbjct: 2 KIGIIGAMEEEVTLLRDKIENRQTISLGGCE---IYTGQLNGTEVALLKSGIGK------ 52
Query: 67 NVNYRANIWALKSV-GCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSE 125
V L +I + + G L ++ GD+V+ D ++
Sbjct: 53 -VAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYE--- 108
Query: 126 NSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSW 185
+ P D+ + EL + + G F + +
Sbjct: 109 --YGQLPGCPAGFKADDKLIAAAEACIAELNLNAV---RGLIVSGDAFINGSVGLAKIRH 163
Query: 186 N---AHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEK 242
N A V M + + + V +D +F E +
Sbjct: 164 NFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDV----------ADQQSHLSFDEFLAV 213
Query: 243 ITKLFVHIVPKIAAK 257
K +V + K
Sbjct: 214 AAKQSSLMVESLVQK 228
>d1ybfa_ c.56.2.1 (A:) AMP nucleosidase {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 246
Score = 45.9 bits (108), Expect = 2e-06
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 16/180 (8%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L ++ VI G L+ E GD ++ + I T + +P
Sbjct: 79 LWAIHPKAVIFLGKCGGLKLENALGDYLLPIAAIRGEGTSNDYLPE----------EVPS 128
Query: 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVP 196
P S + I +++ G + + RS +A V+M
Sbjct: 129 LP--SFSVLRAISSAIQNKGKDYWTGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETAT 186
Query: 197 EVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKEN-VEKITKLFVHIVPKIA 255
+ + + A+ + +D V + + +N E+ L + + I
Sbjct: 187 LMTVGFANKIPMGALLLISD---RPMFPEGVKTEESDQLVTDNFAEEHLMLGIDALEIIR 243
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
562]}
Length = 477
Score = 38.4 bits (89), Expect = 7e-04
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 7/118 (5%)
Query: 77 LKSVGCTHVIVSTATGSLQEEIQPGDLVILDSFIDRTRTRIQTFFDGSENSPNGVLHIPM 136
L + ++ G L+E GD V+ +++ +
Sbjct: 285 LAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPIPS----IAEV 340
Query: 137 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES--NLFRSWNAHLVNM 192
+ A ++T+ + +E+ + GT V + + R + F A ++M
Sbjct: 341 QRALYDATKLVSGRPGEEVKQRLR-TGTVVTTDDRNWELRYSASALRFNLSRAVAIDM 397
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli
[TaxId: 562]}
Length = 250
Score = 32.8 bits (74), Expect = 0.037
Identities = 20/170 (11%), Positives = 48/170 (28%), Gaps = 27/170 (15%)
Query: 44 GTIQGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDL 103
+ G VI+ G + + L +G + TG++Q I GD+
Sbjct: 52 AELDGKP-VIVCSTG------IGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDV 104
Query: 104 VILDSFIDRTRTRIQTFFDGSENSPNGVLHIPMEPAFDNSTRQIIIDSLKELGFKFHDKG 163
++ + + + + D ++++ K +G H
Sbjct: 105 LVTTASVRLDGASLH------------FAPLEFPAVADFECTTALVEAAKSIGATTH--- 149
Query: 164 TAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 213
G SS ++ + + + + + + M
Sbjct: 150 -----VGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEM 194
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 27.8 bits (62), Expect = 0.36
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALKSVGCT 83
D V H ++ T+ +V Y ALK G T
Sbjct: 49 DAVTYTEHAKRKTVTAMDVVY-----ALKRQGRT 77
>d1ne9a1 d.108.1.4 (A:1-164) Peptidyltransferase FemX {Weissella
viridescens [TaxId: 1629]}
Length = 164
Score = 28.3 bits (63), Expect = 0.58
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 5/59 (8%)
Query: 54 LARHGRKH-----TINPSNVNYRANIWALKSVGCTHVIVSTATGSLQEEIQPGDLVILD 107
A +P L+ G + A + IQP ++LD
Sbjct: 93 EAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVADAGMHATIQPRLNMVLD 151
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 25.8 bits (55), Expect = 3.7
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 47 QGVDCVILARHGRKHTINPSNVNYRANIWALKSVGCTHVIVSTAT 91
+ +I+ H ++P+++ R + I+ TAT
Sbjct: 97 VNWEVIIM---DEAHFLDPASIAARGWAAHRARANESATILMTAT 138
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 24.7 bits (54), Expect = 5.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 134 IPMEPAFDNSTRQIIIDSLKELGFKF 159
IP A N ++++ KELG KF
Sbjct: 23 IPRRFAVPNVKLHELVEASKELGLKF 48
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 25.6 bits (55), Expect = 6.5
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 140 FDNSTRQIIIDSLKELGFKFHDK 162
+ + ++ LKE G K
Sbjct: 159 LKDPAFRDLVRRLKEAGVSMESK 181
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 25.3 bits (55), Expect = 8.4
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 231 DVLKTFKENVEKITKLFVHIVPKIAAK 257
D K + ++KIT F+ ++A K
Sbjct: 152 DETKRAEAEIQKITDEFIAKADQLAEK 178
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 23.6 bits (51), Expect = 8.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 50 DCVILARHGRKHTINPSNVNYRANIWALK 78
+ V LA+H + TI ++ A K
Sbjct: 43 EAVKLAKHAGRKTIKAEDI-----ELARK 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,027,713
Number of extensions: 46539
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 26
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)