Query psy17033
Match_columns 148
No_of_seqs 169 out of 1045
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:07:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3la8_A SMU.1229, putative puri 100.0 1.7E-38 5.7E-43 265.0 13.1 116 1-119 188-303 (303)
2 3fuc_A Purine nucleoside phosp 100.0 2.2E-37 7.5E-42 256.2 16.1 120 1-120 162-283 (284)
3 3khs_A Purine nucleoside phosp 100.0 2.3E-37 7.7E-42 256.1 13.9 121 1-122 159-282 (285)
4 3phb_E Purine nucleoside phosp 100.0 5E-37 1.7E-41 258.1 15.4 122 1-122 197-320 (324)
5 3odg_A Xanthosine phosphorylas 100.0 6E-36 2E-40 248.0 15.8 117 1-119 168-284 (287)
6 3ozb_A Methylthioadenosine pho 100.0 4.1E-35 1.4E-39 239.6 16.3 116 1-117 143-258 (259)
7 1tcv_A Purine-nucleoside phosp 100.0 1E-34 3.5E-39 240.3 12.9 118 1-121 164-286 (287)
8 1qe5_A Pentosyltransferase; en 100.0 3.6E-34 1.2E-38 234.8 14.0 112 1-118 155-266 (266)
9 1vmk_A Purine nucleoside phosp 100.0 3.5E-34 1.2E-38 236.3 13.9 112 1-119 166-277 (277)
10 2p4s_A Purine nucleoside phosp 100.0 6.3E-34 2.1E-38 243.1 15.2 121 1-121 247-369 (373)
11 1g2o_A Purine nucleoside phosp 100.0 4.1E-34 1.4E-38 234.7 13.1 113 1-119 156-268 (268)
12 1cb0_A Protein (5'-deoxy-5'-me 100.0 1.6E-32 5.4E-37 225.4 18.0 143 1-143 140-282 (283)
13 2a8y_A 5'-methylthioadenosine 100.0 3E-32 1E-36 223.2 15.7 119 1-121 133-252 (270)
14 1wta_A 5'-methylthioadenosine 100.0 7E-32 2.4E-36 221.6 16.2 119 1-121 138-257 (275)
15 3nm6_B MTA/SAH nucleosidase; h 99.7 2.6E-17 9E-22 129.3 11.7 107 4-119 122-230 (230)
16 3o4v_A MTA/SAH nucleosidase; m 99.6 1.7E-15 6E-20 119.3 12.3 108 4-120 122-232 (234)
17 1odk_A Purine nucleoside phosp 99.6 5E-15 1.7E-19 117.1 13.2 102 4-109 128-229 (235)
18 1vhw_A Purine nucleoside phosp 99.6 8.4E-15 2.9E-19 117.6 14.0 109 3-115 130-238 (253)
19 3qpb_A Uridine phosphorylase; 99.6 8.3E-16 2.8E-20 126.4 8.1 83 3-86 156-250 (282)
20 1zos_A 5'-methylthioadenosine 99.6 2.3E-15 7.8E-20 117.8 9.9 107 4-119 120-229 (230)
21 1z34_A Purine nucleoside phosp 99.6 1.1E-14 3.8E-19 115.1 13.4 102 3-108 127-228 (235)
22 3dp9_A MTA/SAH nucleosidase; v 99.6 8.3E-15 2.8E-19 115.2 12.0 108 3-119 119-230 (231)
23 3eei_A 5-methylthioadenosine n 99.6 1E-14 3.6E-19 114.8 12.2 107 4-119 123-233 (233)
24 3bl6_A 5'-methylthioadenosine 99.6 9.4E-15 3.2E-19 114.3 11.4 107 4-119 121-230 (230)
25 1je0_A MTAP;, 5'-methylthioade 99.6 9.2E-15 3.1E-19 115.5 11.1 98 3-103 128-225 (236)
26 3phc_A Purine nucleoside phosp 99.6 6.5E-15 2.2E-19 120.7 8.3 114 3-123 129-245 (275)
27 1ybf_A AMP nucleosidase; struc 99.6 1.2E-14 4.1E-19 117.9 9.5 117 3-122 132-249 (268)
28 3bsf_A AT4G34840, nucleosidase 99.5 2E-14 6.7E-19 115.3 8.8 101 6-122 148-249 (254)
29 2h8g_A 5'-methylthioadenosine 99.5 8.3E-14 2.8E-18 112.9 11.0 95 22-123 168-263 (267)
30 3uaw_A PNP, purine nucleoside 99.5 1.8E-13 6.2E-18 108.9 12.1 90 4-97 128-217 (235)
31 3u40_A Pnpase, purine nucleosi 99.5 1.2E-13 4E-18 110.8 9.8 96 4-103 137-232 (242)
32 2b94_A Purine nucleoside phosp 99.5 4.9E-14 1.7E-18 114.1 7.6 109 3-119 151-263 (267)
33 3ddo_A Urdpase, upase, uridine 99.5 8.4E-14 2.9E-18 112.2 7.7 77 4-83 131-223 (253)
34 4g41_A MTA/SAH nucleosidase; m 99.4 4.4E-12 1.5E-16 99.7 14.3 111 3-120 124-235 (236)
35 3mb8_A Purine nucleoside phosp 99.3 7.4E-12 2.5E-16 102.8 10.8 79 3-83 133-213 (279)
36 1t8s_A AMP nucleosidase; alpha 99.2 5.5E-11 1.9E-15 104.5 10.4 114 4-123 342-467 (484)
37 3bje_A Nucleoside phosphorylas 97.9 5.4E-05 1.9E-09 63.8 9.2 80 4-84 210-320 (349)
38 3euf_A Uridine phosphorylase 1 97.5 0.0014 4.8E-08 54.7 12.0 105 6-118 201-323 (328)
39 3p0f_A Uridine phosphorylase 2 97.2 0.0051 1.7E-07 50.5 12.4 106 5-118 171-294 (297)
40 3tlq_A Regulatory protein YDIV 84.9 1.1 3.9E-05 34.4 4.7 43 4-55 181-223 (242)
41 4hjf_A Ggdef family protein; s 82.5 1.4 4.8E-05 36.0 4.5 43 4-55 265-307 (340)
42 2r6o_A Putative diguanylate cy 78.5 2.5 8.7E-05 33.7 4.7 41 6-55 218-258 (294)
43 4f3h_A Fimxeal, putative uncha 77.7 2.4 8.3E-05 32.4 4.2 42 5-55 197-238 (250)
44 2vpu_A TET3, 354AA long hypoth 76.9 23 0.00078 29.1 10.2 89 2-124 264-352 (354)
45 3m9w_A D-xylose-binding peripl 76.8 6.9 0.00024 30.0 6.6 70 2-78 13-91 (313)
46 3s83_A Ggdef family protein; s 76.1 3.2 0.00011 31.7 4.5 41 6-55 194-234 (259)
47 3kzp_A LMO0111 protein, putati 75.0 2.7 9.3E-05 31.5 3.8 39 8-55 186-224 (235)
48 3sy8_A ROCR; TIM barrel phosph 73.8 4 0.00014 33.4 4.8 42 5-55 330-371 (400)
49 3kl9_A PEPA, glutamyl aminopep 70.9 11 0.00039 31.0 6.9 84 2-121 263-346 (355)
50 3tb6_A Arabinose metabolism tr 70.9 12 0.00042 27.9 6.6 69 2-77 26-106 (298)
51 3l6u_A ABC-type sugar transpor 70.0 9.9 0.00034 28.6 5.9 70 2-78 19-97 (293)
52 3pjx_A Cyclic dimeric GMP bind 67.9 5.6 0.00019 32.8 4.4 41 6-55 378-418 (430)
53 2wzn_A TET3, 354AA long hypoth 67.2 6.5 0.00022 29.6 4.3 49 68-126 306-354 (354)
54 3gfz_A Klebsiella pneumoniae B 66.8 6.3 0.00021 33.0 4.5 42 5-55 345-386 (413)
55 3g1w_A Sugar ABC transporter; 64.0 16 0.00054 27.6 6.1 71 2-78 15-94 (305)
56 3qk7_A Transcriptional regulat 63.0 46 0.0016 25.1 8.7 72 2-78 21-96 (294)
57 3rot_A ABC sugar transporter, 62.7 42 0.0014 25.3 8.3 71 2-78 14-94 (297)
58 1ydn_A Hydroxymethylglutaryl-C 62.2 24 0.00082 27.8 7.0 105 4-110 22-131 (295)
59 2bas_A YKUI protein; EAL domai 61.8 6.7 0.00023 32.9 3.8 41 6-55 212-252 (431)
60 3l49_A ABC sugar (ribose) tran 61.4 18 0.00063 27.0 5.9 70 2-78 16-94 (291)
61 1dxe_A 2-dehydro-3-deoxy-galac 61.3 14 0.00049 28.7 5.5 46 4-59 190-238 (256)
62 1wbh_A KHG/KDPG aldolase; lyas 61.1 15 0.00051 28.1 5.4 38 39-76 97-135 (214)
63 1mxs_A KDPG aldolase; 2-keto-3 59.4 25 0.00087 27.0 6.5 37 40-76 108-145 (225)
64 2ioy_A Periplasmic sugar-bindi 57.6 26 0.00089 26.3 6.2 69 2-77 12-89 (283)
65 3uug_A Multiple sugar-binding 57.2 21 0.00072 27.3 5.7 70 2-78 14-92 (330)
66 1jaj_A DNA polymerase beta-lik 56.9 6.5 0.00022 29.6 2.6 47 8-54 121-167 (174)
67 3bbl_A Regulatory protein of L 56.9 59 0.002 24.3 8.2 72 2-77 19-94 (287)
68 3hv8_A Protein FIMX; EAL phosp 56.6 18 0.0006 27.7 5.1 38 9-55 210-247 (268)
69 2xz9_A Phosphoenolpyruvate-pro 56.6 11 0.00037 30.9 4.1 48 3-58 226-277 (324)
70 2rgy_A Transcriptional regulat 55.4 61 0.0021 24.2 8.1 71 2-77 19-97 (290)
71 3o74_A Fructose transport syst 54.7 31 0.0011 25.4 6.1 69 2-77 13-89 (272)
72 1ydo_A HMG-COA lyase; TIM-barr 54.6 81 0.0028 25.2 9.7 103 4-110 24-133 (307)
73 1ylo_A Hypothetical protein SF 53.5 39 0.0013 26.6 6.9 81 3-119 255-336 (348)
74 2v5j_A 2,4-dihydroxyhept-2-ENE 52.8 20 0.0007 28.6 5.1 46 4-59 211-259 (287)
75 2vws_A YFAU, 2-keto-3-deoxy su 51.9 30 0.001 27.1 5.8 41 9-59 198-238 (267)
76 2cw6_A Hydroxymethylglutaryl-C 51.6 48 0.0016 26.2 7.1 105 4-110 23-132 (298)
77 1tjy_A Sugar transport protein 51.4 75 0.0026 24.3 8.1 69 2-77 14-92 (316)
78 3ksm_A ABC-type sugar transpor 50.9 69 0.0024 23.3 7.9 72 2-78 11-92 (276)
79 2yfv_C SCM3, KLLA0F05115P; cel 50.9 27 0.00091 22.3 4.3 31 91-121 17-47 (63)
80 2yw3_A 4-hydroxy-2-oxoglutarat 50.8 35 0.0012 25.7 5.9 37 40-76 93-130 (207)
81 3cpx_A Aminopeptidase, M42 fam 50.7 83 0.0029 24.8 8.5 72 3-101 240-311 (321)
82 3jy6_A Transcriptional regulat 49.5 27 0.00091 26.0 5.1 69 2-77 18-92 (276)
83 3gbv_A Putative LACI-family tr 49.0 44 0.0015 24.8 6.3 73 2-78 20-102 (304)
84 1rxd_A Protein tyrosine phosph 48.2 13 0.00045 25.6 2.9 50 26-77 14-68 (159)
85 1to3_A Putative aldolase YIHT; 47.4 26 0.00089 28.2 4.9 48 9-59 143-198 (304)
86 3kke_A LACI family transcripti 47.1 52 0.0018 24.9 6.5 68 2-77 26-101 (303)
87 2qjg_A Putative aldolase MJ040 46.9 88 0.003 23.8 7.8 68 10-80 134-212 (273)
88 8abp_A L-arabinose-binding pro 46.3 34 0.0012 25.7 5.2 68 2-77 13-89 (306)
89 3e61_A Putative transcriptiona 46.1 36 0.0012 25.2 5.3 68 2-76 19-92 (277)
90 2fep_A Catabolite control prot 45.8 50 0.0017 24.8 6.1 70 2-78 27-103 (289)
91 2ftp_A Hydroxymethylglutaryl-C 45.6 1E+02 0.0035 24.3 8.2 106 3-110 25-135 (302)
92 3gyb_A Transcriptional regulat 45.0 47 0.0016 24.6 5.8 70 2-78 16-87 (280)
93 3isx_A Endoglucanase; TM1050, 44.5 17 0.00058 29.9 3.4 73 2-101 262-334 (343)
94 3fap_B FRAP, FKBP12-rapamycin 44.4 4.8 0.00017 27.5 0.1 18 35-54 43-60 (94)
95 3n0w_A ABC branched chain amin 44.1 51 0.0017 25.7 6.1 68 3-73 152-224 (379)
96 1vd6_A Glycerophosphoryl diest 43.8 53 0.0018 24.5 6.0 42 12-63 177-218 (224)
97 2dri_A D-ribose-binding protei 43.6 35 0.0012 25.4 4.9 69 2-77 12-89 (271)
98 1jx6_A LUXP protein; protein-l 43.5 1.1E+02 0.0037 23.4 8.7 72 2-76 55-134 (342)
99 2fn9_A Ribose ABC transporter, 43.4 60 0.0021 24.1 6.2 69 2-77 13-90 (290)
100 3k9c_A Transcriptional regulat 43.3 58 0.002 24.4 6.2 70 2-77 22-95 (289)
101 4e38_A Keto-hydroxyglutarate-a 42.6 18 0.00062 28.3 3.2 18 40-57 136-153 (232)
102 1vho_A Endoglucanase; structur 42.0 1E+02 0.0036 24.1 7.8 83 4-120 253-335 (346)
103 3hvb_A Protein FIMX; EAL phosp 42.0 37 0.0013 27.8 5.1 38 9-55 379-416 (437)
104 3d02_A Putative LACI-type tran 41.8 58 0.002 24.3 5.9 71 2-78 15-94 (303)
105 2vk2_A YTFQ, ABC transporter p 41.6 61 0.0021 24.4 6.1 69 2-77 13-90 (306)
106 3hs3_A Ribose operon repressor 41.3 8.2 0.00028 29.1 0.9 70 2-77 21-92 (277)
107 3brq_A HTH-type transcriptiona 40.8 60 0.002 24.0 5.8 69 2-77 32-108 (296)
108 4h3d_A 3-dehydroquinate dehydr 40.4 94 0.0032 24.2 7.1 72 6-79 124-210 (258)
109 3gv0_A Transcriptional regulat 39.7 73 0.0025 23.7 6.2 70 4-77 23-96 (288)
110 3i09_A Periplasmic branched-ch 39.0 59 0.002 25.2 5.7 69 3-74 150-223 (375)
111 4id3_A DNA repair protein REV1 38.7 33 0.0011 21.6 3.5 30 27-56 9-39 (92)
112 1gud_A ALBP, D-allose-binding 38.5 50 0.0017 24.8 5.1 71 2-77 12-91 (288)
113 3o1i_D Periplasmic protein TOR 38.2 38 0.0013 25.3 4.4 69 2-76 16-93 (304)
114 3d8u_A PURR transcriptional re 38.2 45 0.0015 24.5 4.7 69 2-77 14-89 (275)
115 3bil_A Probable LACI-family tr 38.0 65 0.0022 25.1 5.8 69 2-77 77-152 (348)
116 3g85_A Transcriptional regulat 37.6 22 0.00076 26.6 2.9 72 2-77 23-98 (289)
117 2o55_A Putative glycerophospho 37.5 1.3E+02 0.0045 22.7 7.5 48 12-65 203-250 (258)
118 3k4h_A Putative transcriptiona 37.4 44 0.0015 24.8 4.6 70 2-78 24-100 (292)
119 2fvy_A D-galactose-binding per 37.3 63 0.0021 24.1 5.5 70 2-78 13-92 (309)
120 4fe7_A Xylose operon regulator 36.6 63 0.0022 25.9 5.7 69 2-78 35-105 (412)
121 3cqj_A L-ribulose-5-phosphate 36.3 1.4E+02 0.0046 22.5 7.4 53 27-79 19-88 (295)
122 2rjo_A Twin-arginine transloca 36.3 67 0.0023 24.6 5.6 70 2-78 16-96 (332)
123 1vhc_A Putative KHG/KDPG aldol 36.1 1.4E+02 0.0049 22.7 7.5 18 40-57 119-136 (224)
124 3egc_A Putative ribose operon 35.8 46 0.0016 24.8 4.5 70 2-78 19-95 (291)
125 3h75_A Periplasmic sugar-bindi 35.7 52 0.0018 25.5 4.9 70 3-79 16-95 (350)
126 4f06_A Extracellular ligand-bi 35.5 89 0.003 24.4 6.3 67 3-72 149-221 (371)
127 1vhe_A Aminopeptidase/glucanas 34.7 1.3E+02 0.0043 24.2 7.2 72 4-102 272-343 (373)
128 2fmp_A DNA polymerase beta; nu 34.3 46 0.0016 27.1 4.5 46 9-54 278-327 (335)
129 3p6l_A Sugar phosphate isomera 33.6 1.4E+02 0.0049 21.9 7.3 88 5-102 60-153 (262)
130 3tsm_A IGPS, indole-3-glycerol 33.4 91 0.0031 24.7 6.0 19 58-76 177-195 (272)
131 2hwg_A Phosphoenolpyruvate-pro 33.4 34 0.0012 30.3 3.8 51 2-59 474-527 (575)
132 2o20_A Catabolite control prot 33.1 99 0.0034 23.6 6.1 69 2-77 74-149 (332)
133 2aef_A Calcium-gated potassium 33.1 1E+02 0.0035 22.6 6.0 51 8-69 83-133 (234)
134 3qja_A IGPS, indole-3-glycerol 32.5 80 0.0027 24.9 5.5 32 46-77 157-189 (272)
135 2h3h_A Sugar ABC transporter, 31.7 1.6E+02 0.0056 22.0 7.4 68 5-78 14-90 (313)
136 3h5o_A Transcriptional regulat 31.3 1.4E+02 0.0048 22.8 6.8 69 2-77 73-148 (339)
137 3jvd_A Transcriptional regulat 31.2 26 0.00088 27.3 2.4 66 2-77 75-143 (333)
138 3dbi_A Sugar-binding transcrip 30.9 1.2E+02 0.004 23.2 6.2 69 2-77 74-150 (338)
139 2qh8_A Uncharacterized protein 30.8 1.7E+02 0.0058 22.0 7.2 73 1-78 17-98 (302)
140 1i4n_A Indole-3-glycerol phosp 30.7 1E+02 0.0034 24.2 5.8 20 40-59 159-179 (251)
141 1vhc_A Putative KHG/KDPG aldol 30.5 65 0.0022 24.6 4.6 33 44-76 103-136 (224)
142 1gxu_A Hydrogenase maturation 30.4 1.2E+02 0.004 19.9 5.8 40 9-51 22-65 (91)
143 1xx1_A Smase I, sphingomyelina 30.2 96 0.0033 23.8 5.6 49 9-65 210-258 (285)
144 2h0a_A TTHA0807, transcription 30.1 46 0.0016 24.5 3.6 71 2-77 10-85 (276)
145 3vav_A 3-methyl-2-oxobutanoate 30.0 1.4E+02 0.0048 23.9 6.6 76 29-105 6-85 (275)
146 3qz6_A HPCH/HPAI aldolase; str 30.0 44 0.0015 26.2 3.5 42 8-59 195-237 (261)
147 2ihm_A POL MU, DNA polymerase 29.8 55 0.0019 27.0 4.3 46 9-54 306-352 (360)
148 2oog_A Glycerophosphoryl diest 29.7 64 0.0022 25.0 4.5 25 39-64 250-274 (287)
149 1x4o_A Splicing factor 4; stru 29.6 9.7 0.00033 24.9 -0.3 29 3-42 11-39 (78)
150 1mzh_A Deoxyribose-phosphate a 29.6 1.4E+02 0.0047 22.5 6.3 18 6-23 130-147 (225)
151 3cs3_A Sugar-binding transcrip 29.6 93 0.0032 22.9 5.3 65 2-77 19-87 (277)
152 3l12_A Putative glycerophospho 29.5 52 0.0018 26.0 4.0 43 12-64 259-301 (313)
153 4fo4_A Inosine 5'-monophosphat 29.4 1.4E+02 0.0049 24.5 6.8 19 39-57 158-176 (366)
154 3c3k_A Alanine racemase; struc 29.4 95 0.0032 23.1 5.3 68 2-77 19-93 (285)
155 3ib6_A Uncharacterized protein 28.5 1.5E+02 0.0052 20.7 7.9 67 11-77 65-142 (189)
156 1lss_A TRK system potassium up 28.4 1.2E+02 0.0042 19.6 6.5 49 9-69 82-130 (140)
157 3o63_A Probable thiamine-phosp 28.4 2E+02 0.0069 22.1 7.7 65 11-79 86-164 (243)
158 4evq_A Putative ABC transporte 28.3 2E+02 0.0068 21.9 7.7 72 3-77 161-237 (375)
159 3ks6_A Glycerophosphoryl diest 28.1 1.6E+02 0.0054 22.3 6.5 23 39-62 213-235 (250)
160 2x0s_A Pyruvate phosphate diki 28.0 85 0.0029 29.2 5.6 52 9-65 836-889 (913)
161 2bcq_A DNA polymerase lambda; 28.0 46 0.0016 27.2 3.4 47 8-54 271-327 (335)
162 3huu_A Transcription regulator 27.5 66 0.0022 24.2 4.1 70 2-78 38-114 (305)
163 2iks_A DNA-binding transcripti 27.3 76 0.0026 23.7 4.4 69 2-77 31-107 (293)
164 3clk_A Transcription regulator 27.2 82 0.0028 23.4 4.6 72 2-77 19-95 (290)
165 4e38_A Keto-hydroxyglutarate-a 27.1 2.1E+02 0.0073 22.0 7.1 37 40-76 116-153 (232)
166 2x7x_A Sensor protein; transfe 27.0 1.1E+02 0.0037 23.3 5.4 68 3-77 17-94 (325)
167 1wa3_A 2-keto-3-deoxy-6-phosph 26.6 54 0.0018 23.8 3.4 19 40-58 113-131 (205)
168 3u65_B TP33 protein; tetratric 26.5 2.2E+02 0.0074 22.6 7.2 69 41-111 166-262 (328)
169 3ffs_A Inosine-5-monophosphate 26.5 1.3E+02 0.0045 25.2 6.1 43 6-57 169-211 (400)
170 3kjx_A Transcriptional regulat 26.4 96 0.0033 23.9 5.0 69 2-77 79-154 (344)
171 2wqd_A Phosphoenolpyruvate-pro 26.4 32 0.0011 30.4 2.3 50 2-58 476-528 (572)
172 3ajx_A 3-hexulose-6-phosphate 26.3 1.4E+02 0.0048 21.5 5.6 61 15-81 71-138 (207)
173 1gox_A (S)-2-hydroxy-acid oxid 25.7 1.1E+02 0.0039 24.8 5.5 40 11-59 215-254 (370)
174 2otd_A Glycerophosphodiester p 25.7 91 0.0031 23.5 4.6 16 40-55 217-232 (247)
175 3no3_A Glycerophosphodiester p 25.6 1.1E+02 0.0037 23.1 5.1 41 13-63 188-228 (238)
176 3hcw_A Maltose operon transcri 25.6 56 0.0019 24.6 3.4 69 2-77 23-98 (295)
177 3pdi_B Nitrogenase MOFE cofact 25.6 2E+02 0.0069 24.1 7.2 68 9-79 324-402 (458)
178 3qvq_A Phosphodiesterase OLEI0 25.5 1.3E+02 0.0044 22.8 5.5 41 13-63 202-242 (252)
179 3e3m_A Transcriptional regulat 24.9 1.5E+02 0.0052 22.9 5.9 68 2-76 81-155 (355)
180 3co8_A Alanine racemase; prote 24.8 53 0.0018 26.6 3.3 32 41-72 49-80 (380)
181 3ctp_A Periplasmic binding pro 24.7 38 0.0013 26.1 2.3 69 2-77 71-142 (330)
182 1ulr_A Putative acylphosphatas 24.3 78 0.0027 20.6 3.5 29 9-37 17-50 (88)
183 2vd8_A Alanine racemase; pyrid 24.0 59 0.002 26.5 3.4 32 41-72 52-83 (391)
184 1dbq_A Purine repressor; trans 24.0 1.8E+02 0.0061 21.3 5.9 70 2-78 18-95 (289)
185 3h5l_A Putative branched-chain 23.8 2.6E+02 0.009 21.9 7.8 69 3-74 174-248 (419)
186 3igs_A N-acetylmannosamine-6-p 23.6 73 0.0025 24.3 3.7 57 17-76 97-155 (232)
187 3q58_A N-acetylmannosamine-6-p 23.6 67 0.0023 24.6 3.5 57 17-76 97-155 (229)
188 2pz0_A Glycerophosphoryl diest 23.6 81 0.0028 23.9 4.0 43 12-64 202-244 (252)
189 1y0y_A FRV operon protein FRVX 23.6 2.7E+02 0.0092 21.9 7.6 83 3-120 267-349 (353)
190 3jr2_A Hexulose-6-phosphate sy 23.6 2.2E+02 0.0075 20.9 6.4 15 40-54 121-135 (218)
191 3ch0_A Glycerophosphodiester p 23.3 52 0.0018 25.2 2.8 23 39-62 245-267 (272)
192 3ngj_A Deoxyribose-phosphate a 23.3 51 0.0017 25.9 2.8 30 33-64 206-235 (239)
193 3sho_A Transcriptional regulat 23.2 38 0.0013 24.1 1.9 46 27-72 88-135 (187)
194 3brs_A Periplasmic binding pro 23.1 72 0.0025 23.6 3.5 70 3-77 19-97 (289)
195 2yxb_A Coenzyme B12-dependent 22.9 1.1E+02 0.0039 21.8 4.5 21 39-59 56-77 (161)
196 3ipc_A ABC transporter, substr 22.8 2.5E+02 0.0085 21.2 8.5 71 3-76 148-223 (356)
197 3tva_A Xylose isomerase domain 22.8 2.2E+02 0.0077 21.1 6.4 21 5-25 48-68 (290)
198 3rz2_A Protein tyrosine phosph 22.7 72 0.0025 23.0 3.4 52 26-77 35-89 (189)
199 3gwq_A D-serine deaminase; str 22.7 2.2E+02 0.0077 23.5 6.8 35 38-72 81-115 (426)
200 1jms_A Terminal deoxynucleotid 22.6 54 0.0019 27.3 2.9 45 10-54 328-373 (381)
201 1y0e_A Putative N-acetylmannos 22.4 1.7E+02 0.0058 21.3 5.5 17 40-56 128-144 (223)
202 4f11_A Gamma-aminobutyric acid 22.3 1.1E+02 0.0037 24.4 4.6 65 3-73 164-233 (433)
203 3lop_A Substrate binding perip 22.3 2.6E+02 0.009 21.3 8.3 69 3-74 151-224 (364)
204 1jcn_A Inosine monophosphate d 22.3 3.3E+02 0.011 22.9 7.9 44 39-82 305-370 (514)
205 3sg0_A Extracellular ligand-bi 22.2 2E+02 0.0068 21.9 6.1 69 3-74 169-242 (386)
206 3eua_A Putative fructose-amino 22.2 36 0.0012 27.2 1.7 43 29-71 79-121 (329)
207 1zcc_A Glycerophosphodiester p 22.0 1.2E+02 0.0042 22.9 4.7 44 11-64 184-228 (248)
208 1tvn_A Cellulase, endoglucanas 22.0 79 0.0027 24.2 3.7 40 35-74 35-96 (293)
209 1mxs_A KDPG aldolase; 2-keto-3 22.0 94 0.0032 23.7 4.0 40 38-79 126-175 (225)
210 1xfc_A Alanine racemase; alpha 21.9 70 0.0024 25.9 3.4 33 40-72 50-82 (384)
211 1vfs_A Alanine racemase; TIM-b 21.9 66 0.0022 26.1 3.3 32 41-72 47-78 (386)
212 3lft_A Uncharacterized protein 21.9 2.3E+02 0.0078 21.1 6.3 73 1-78 11-91 (295)
213 3anu_A D-serine dehydratase; P 21.9 1.2E+02 0.0041 24.2 4.8 35 38-72 47-81 (376)
214 1bd0_A Alanine racemase; isome 21.8 66 0.0023 26.2 3.3 32 41-72 48-79 (388)
215 3lkb_A Probable branched-chain 21.8 2.8E+02 0.0095 21.4 8.1 71 3-76 153-228 (392)
216 2dy3_A Alanine racemase; alpha 21.7 72 0.0024 25.5 3.4 32 41-72 43-74 (361)
217 1wbh_A KHG/KDPG aldolase; lyas 21.6 98 0.0033 23.3 4.0 43 38-80 116-166 (214)
218 3s4o_A Protein tyrosine phosph 21.4 52 0.0018 22.6 2.3 50 29-78 24-76 (167)
219 2fhm_A Probable acylphosphatas 21.4 77 0.0026 20.7 3.0 29 9-37 17-50 (91)
220 3iix_A Biotin synthetase, puta 21.4 99 0.0034 24.2 4.2 44 12-59 182-229 (348)
221 3fj1_A Putative phosphosugar i 21.3 36 0.0012 27.5 1.6 42 30-71 97-138 (344)
222 3khj_A Inosine-5-monophosphate 21.2 3.3E+02 0.011 22.1 8.0 66 7-81 131-218 (361)
223 4avf_A Inosine-5'-monophosphat 21.2 2.3E+02 0.0079 24.0 6.7 71 3-82 251-344 (490)
224 2xhz_A KDSD, YRBH, arabinose 5 21.2 39 0.0013 23.9 1.6 45 27-71 97-143 (183)
225 2no4_A (S)-2-haloacid dehaloge 21.2 2.2E+02 0.0077 20.0 7.1 64 13-77 135-205 (240)
226 2hmt_A YUAA protein; RCK, KTN, 20.6 1.8E+02 0.0062 18.8 5.1 44 13-68 88-131 (144)
227 1p4c_A L(+)-mandelate dehydrog 20.6 97 0.0033 25.5 4.1 67 5-82 208-290 (380)
228 3fkj_A Putative phosphosugar i 20.5 35 0.0012 27.6 1.3 42 29-70 94-135 (347)
229 1w8s_A FBP aldolase, fructose- 20.4 2.5E+02 0.0086 21.6 6.3 65 12-80 129-206 (263)
230 2ggt_A SCO1 protein homolog, m 20.2 2E+02 0.0068 19.0 9.1 67 6-75 39-113 (164)
No 1
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=100.00 E-value=1.7e-38 Score=265.04 Aligned_cols=116 Identities=23% Similarity=0.409 Sum_probs=103.9
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|++|||++||++++++|+++|++++ +|||++++||+|||+||+||||+||||+||||++||+++|||+||||++|++||
T Consensus 188 m~~~yd~~Lr~~a~~aA~~~gi~~~-~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMst~pEa~vAre~gi~~~~Is~IT 266 (303)
T 3la8_A 188 MSNAYTADYREVAHQVADKIGIKLD-EGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTVPEVIVAVHSGLKVLGISAIT 266 (303)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTCCCE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHcCCceE-EEEEEEeeCCccCCHHHHHHHHHcCCCEEeccHHHHHHHHHHcCCCEEEEEEEe
Confidence 6789999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|+++| . ++++||+||+++++++.+++++||.++|+++
T Consensus 267 D~a~g-~-~~~vs~eevl~~a~~~~~~~~~ll~~~i~~~ 303 (303)
T 3la8_A 267 NYAAG-F-QSELNHEEVVAVTQQIKEDFKGLVKAILVEL 303 (303)
T ss_dssp EECTT-C----------CCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 4 5789999999999999999999999999875
No 2
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=100.00 E-value=2.2e-37 Score=256.18 Aligned_cols=120 Identities=28% Similarity=0.434 Sum_probs=113.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCCce-ecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKF-HDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~-~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
|++|||++||+.++++|+++|++. +++|||++++||+|||+||+||||+||+|+||||++||+++|||+||||++|++|
T Consensus 162 ~~~~~d~~L~~~~~~~a~~~gi~~~~~~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~V 241 (284)
T 3fuc_A 162 MSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLI 241 (284)
T ss_dssp CTTCSCHHHHHHHHHHHHHHTCSSCCEEEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCcceEeeEEEEecCCEEcCHHHHHHHHHcCCcEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 678999999999999999999992 4499999999999999999999999999999999999999999999999999999
Q ss_pred ecccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17033 80 TDYDCWR-DTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120 (148)
Q Consensus 80 TN~a~~~-~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~ 120 (148)
||+++|. .+.+++||+||+++++++..++++||.++|++|+
T Consensus 242 Td~a~~~~~~~~~~s~eev~~~~~~~~~~~~~l~~~~i~~l~ 283 (284)
T 3fuc_A 242 TNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIP 283 (284)
T ss_dssp EEECCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred ecccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999984 3467899999999999999999999999999874
No 3
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed beta-barrel, hydrolase; 2.38A {Grouper iridovirus} SCOP: c.56.2.0
Probab=100.00 E-value=2.3e-37 Score=256.15 Aligned_cols=121 Identities=27% Similarity=0.495 Sum_probs=104.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCc--eecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEe
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFK--FHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~--~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~ 78 (148)
|++|||++||+.++++|+++|++ ++ +|||++++||+|||+||+||||+||+|+||||++||+++|||+||||++|++
T Consensus 159 ~~~~yd~~L~~~~~~~a~~~gi~~~~~-~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i~~ 237 (285)
T 3khs_A 159 MTSVYDKTLRKYAISAARELGMSYATH-EGVYCCVNGPSFETPAECKILRLMGSDAVGMSTAPETIVAKHGGMRCLAVSL 237 (285)
T ss_dssp CTTCBCHHHHHHHHHHHHHHTCGGGEE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHcCCCccee-eEEEEEecCCEEeCHHHHHHHHHcCCcEEeccHHHHHHHHHHCCCCEEEEEE
Confidence 57899999999999999999999 55 9999999999999999999999999999999999999999999999999999
Q ss_pred eecccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17033 79 ATDYDCWR-DTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122 (148)
Q Consensus 79 VTN~a~~~-~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~ 122 (148)
|||+++|. .+.+++||+||+++++++++++++||.++|++++.+
T Consensus 238 VTd~a~g~~~~~~~~s~~ev~~~~~~~~~~~~~lv~~~i~~l~~~ 282 (285)
T 3khs_A 238 ISNVIASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEKIRGE 282 (285)
T ss_dssp EEEECCTTCC------------CHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999986 236789999999999999999999999999999765
No 4
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=258.14 Aligned_cols=122 Identities=26% Similarity=0.409 Sum_probs=114.8
Q ss_pred CCcccCHHHHHHHHHHHHHhCCce-ecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKF-HDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~-~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
|++|||++||++++++|+++|++. +++|||++++||+|||+||+||||+||||+||||++||+++|||+||||++|++|
T Consensus 197 m~~~yd~~Lr~~a~~aA~~~gi~~~~~~Gvy~~~~GP~FeT~AE~r~~r~~GadaVgMet~pEa~vAr~~gi~~~~Is~V 276 (324)
T 3phb_E 197 MSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLI 276 (324)
T ss_dssp CTTCSCHHHHHHHHHHHTTSCCSSCCEEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCceEeceEEEEecCCEEeCHHHHHHHHHcCCcEEecChHHHHHHHHHCCCCEEEEEEE
Confidence 678999999999999999999982 4499999999999999999999999999999999999999999999999999999
Q ss_pred ecccccc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17033 80 TDYDCWR-DTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122 (148)
Q Consensus 80 TN~a~~~-~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~ 122 (148)
||+++|. .+.+++||+||++++++++.++++||.++|++|+.+
T Consensus 277 TD~a~~~~~~~~~vs~eevl~~a~~~~~~~~~Lv~~~i~~l~~~ 320 (324)
T 3phb_E 277 TNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASIPLP 320 (324)
T ss_dssp EEECCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred ecccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999974 336789999999999999999999999999999764
No 5
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; HET: XAN; 1.64A {Yersinia pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Probab=100.00 E-value=6e-36 Score=247.95 Aligned_cols=117 Identities=24% Similarity=0.304 Sum_probs=113.4
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|++|||++||+.+.++|+++|+++| +|+|++++||+|||+||+|+||+||+|+||||++||+++|||+||||++|++||
T Consensus 168 ~~~~~d~~L~~~a~~aA~~~gi~~~-~Gvy~~~~Gp~feT~AE~~~~r~~GadaVgMe~~pea~vA~~~gi~~~~I~~VS 246 (287)
T 3odg_A 168 LANAYDKDLRADMAKIAQQLDIPLT-EGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAIT 246 (287)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTCCCE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHCCCCEE-EEEEEEecCCccCCHHHHHHHHHcCCEEEeCcHHHHHHHHHHcCCCEEEEEEEE
Confidence 5789999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|+++|.. +++++|+||+++++++.+++++||.++|+++
T Consensus 247 D~a~g~~-~~~~s~eev~~~a~~~~~~~~~ll~~~i~~~ 284 (287)
T 3odg_A 247 NLAEGLS-DVVLSHEQTLKFAKVASVNFTKLIEAFLKSK 284 (287)
T ss_dssp EECTTSS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 5789999999999999999999999999987
No 6
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.1e-35 Score=239.64 Aligned_cols=116 Identities=24% Similarity=0.490 Sum_probs=110.7
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|++|||++||+.+.++|+++|++++++|+|++++||+|||+||++++|++|+|+||||++||+++|||+||||++|++||
T Consensus 143 ~~~~~d~~L~~~~~~~a~~~gi~~~~~Gvy~~~~Gp~fet~aE~~~~~~~GadaVgMe~~~ea~vA~~~gi~~~~I~~IS 222 (259)
T 3ozb_A 143 FSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVV 222 (259)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCEESCCEEEECCCSSCCCHHHHHHHHHTTCSEEESSSTTHHHHHHHTTCCEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEeeeEEEEEeCCccCCHHHHHHHHHcCCEEEcCcHHHHHHHHHHcCCCeEEEEEEE
Confidence 57899999999999999999999656999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVP 117 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~ 117 (148)
|+++|.. ++++||+||+++++++++++++||.++|+
T Consensus 223 D~a~~~~-~~~~s~eev~~~a~~~~~~~~~l~~~~i~ 258 (259)
T 3ozb_A 223 NPAAGKS-AGIITMAEIEQALHDGIGKVREVLARVLA 258 (259)
T ss_dssp EECTTTS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999975 46799999999999999999999999885
No 7
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=100.00 E-value=1e-34 Score=240.30 Aligned_cols=118 Identities=26% Similarity=0.424 Sum_probs=101.5
Q ss_pred CCcccCHHHHHHHHHHHH--HhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEe
Q psy17033 1 MEPAFDNSTRQIIIDSLK--ELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~--~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~ 78 (148)
|++|||++||+.+.++|+ ++|+++| +|+|++++||+|||+||+|+||+||||+||||++||+++|||+||||++|++
T Consensus 164 ~~~~~d~~L~~~~~~~a~~~~~~~~~~-~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~~ea~vA~~~gi~~~~i~~ 242 (287)
T 1tcv_A 164 LSNAYDRDLRKLAVQVAEENGFGNLVH-QGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSL 242 (287)
T ss_dssp CTTSBCHHHHHHHHHHHHHTTCGGGEE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHTTCEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHhhhcCCCcee-eEEEEEecCCccCCHHHHHHHHHcCCcEEcccHHHHHHHHHHCCCCEEEEEE
Confidence 578999999999999999 8899988 9999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 79 ATDYDCWRDTG---NKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 79 VTN~a~~~~~~---~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
|||+++ .+ . ++++|+||+++++++.+++++||.++|+++++
T Consensus 243 Vtd~a~-~~-~~~~~~~~~eev~~~~~~~~~~~~~lv~~~i~~l~~ 286 (287)
T 1tcv_A 243 VTNISV-LD-VESDLKPNHEEVLATGAQRAELMQSWFEKIIEKLPK 286 (287)
T ss_dssp EEEECC-CC-TTCC-----------CHHHHHHHHHHHHHHHHHSCC
T ss_pred eecccc-cc-ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999987 42 4 67999999999999999999999999999865
No 8
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=100.00 E-value=3.6e-34 Score=234.79 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=105.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|+++||++||+.+.++|+ .++ +|||++++||+|||+||+||||+||||+||||++||+++|||+||||++|++||
T Consensus 155 ~~~~~d~~L~~~~~~~a~----~~~-~Gvy~~~~Gp~feT~aE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~i~~Vt 229 (266)
T 1qe5_A 155 LTDVYSPRLRELAHRVDP----TLP-EGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVT 229 (266)
T ss_dssp CTTSBCHHHHHHHHHHCT----TCC-EEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHH----HhC-CCeEEEeeCCEEeCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEEEEEe
Confidence 678999999999999987 344 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~ 118 (148)
|+++|.. .++++|+||+++++++..++++||.++|++
T Consensus 230 d~a~g~~-~~~~s~eev~~~~~~~~~~~~~ll~~~i~~ 266 (266)
T 1qe5_A 230 NLAAGIS-PTPLSHAEVIEAGQAAGPRISALLADIAKR 266 (266)
T ss_dssp EECTTTC-SSCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999875 478999999999999999999999999863
No 9
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics protein structure initiative, PSI, joint center for structu genomics; HET: GUN; 2.01A {Thermotoga maritima} SCOP: c.56.2.1
Probab=100.00 E-value=3.5e-34 Score=236.31 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=101.0
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|++|||++||+. +|++ ++++ +|+|++++||+|||+||+|+||+||||+||||++||+++|||+||||++|++||
T Consensus 166 ~~~~~d~~L~~~---~a~~--i~~~-~Gvy~~~~Gp~feT~AE~~~~r~~Gad~VgMe~~pea~lAr~~gi~~~~I~~IT 239 (277)
T 1vmk_A 166 MSSVVDPEWARK---IQER--LSLK-EGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVT 239 (277)
T ss_dssp CTTCSCHHHHHH---HHHH--HCCE-EEEEEECCCSSCCCHHHHHHHHHTTCSEEESSSHHHHHHHHHHTCEEEEEEEEE
T ss_pred CccccCHHHHHH---Hhhh--CCCc-eEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHCCCCEEEEEEEe
Confidence 678999999999 5665 6666 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|+++|.. .++++|+||++++++++.++++||.++|+++
T Consensus 240 D~a~g~~-~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~ 277 (277)
T 1vmk_A 240 NMAAGIT-HGRLSHEEVVRTTKMAQGKIEKALTTAVEVF 277 (277)
T ss_dssp EECTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCccCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999875 4789999999999999999999999999763
No 10
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A {Anopheles gambiae}
Probab=100.00 E-value=6.3e-34 Score=243.06 Aligned_cols=121 Identities=19% Similarity=0.329 Sum_probs=111.9
Q ss_pred CCcccCHHHHHHHHHHHHHhCCc-eecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFK-FHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~-~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
|+++||++||+.+.++|+++|++ .+++|+|++++||+|||+||+|+||+||||+||||++||+++|||+||||++|++|
T Consensus 247 ms~~yd~~Lr~~a~~aA~~~gi~~~~~~Gvyv~~~GP~FeT~AE~r~lr~~GadaVgMetapEa~lAre~Gi~~~~I~~V 326 (373)
T 2p4s_A 247 MANTYDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLI 326 (373)
T ss_dssp CTTSBCHHHHHHHHHHHHHTTCGGGEEEEEEEECCCSSCCCHHHHHHHHHTTCCEEESSSHHHHHHHHHTTCEEEEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHcCCCcceeeEEEEEeeCCcccCHHHHHHHHHcCCeEEecChHHHHHHHHHcCCCEEEEEEe
Confidence 57899999999999999999995 33499999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 80 TDYDCWRDT-GNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 80 TN~a~~~~~-~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
||+++|..+ .++++|+||+++++++++++.+||.++|++|++
T Consensus 327 TD~a~~~~~~~~~vs~eEvle~~~~~~~~~~~Lv~~~I~~l~~ 369 (373)
T 2p4s_A 327 TNMCTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIHY 369 (373)
T ss_dssp EEECCCCSSSCCCCCHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred ecccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999986321 168999999999999999999999999999854
No 11
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=100.00 E-value=4.1e-34 Score=234.66 Aligned_cols=113 Identities=21% Similarity=0.374 Sum_probs=106.9
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|+++||++||+.+.++|++ + ++|+|++++||+|||+||+|+||+||+|+||||++||+++|||+||||++|++||
T Consensus 156 ~~~~~d~~L~~~~~~~a~~----~-~~Gvy~~~~Gp~feT~aE~~~~~~~GadaVgMe~~~ea~lA~~~gi~~~~i~~Vt 230 (268)
T 1g2o_A 156 LTDAYSPRLRELARQSDPQ----L-AEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVT 230 (268)
T ss_dssp CTTSSCHHHHHHHHHHCTT----C-EEEEEEECCCSSCCCHHHHHHHHHHTCSEEESSSHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHH----h-CCCeEEEEeCCEEeCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEe
Confidence 5789999999999999976 4 4999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|+++|.. .++++|+||+++++++..++++||.++|+++
T Consensus 231 D~a~g~~-~~~~s~eev~~~~~~~~~~~~~lv~~~i~~~ 268 (268)
T 1g2o_A 231 NLAAGIT-GEPLSHAEVLAAGAASATRMGALLADVIARF 268 (268)
T ss_dssp EECTTSS-CCCCCHHHHHHHHHTTHHHHHHHHHHHHHHC
T ss_pred cCccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999875 5789999999999999999999999999864
No 12
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor; methylthioadenosine phosphorylase, purine nucleoside phospho purine salvage, adenine; HET: ADE; 1.70A {Homo sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A* 1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Probab=100.00 E-value=1.6e-32 Score=225.39 Aligned_cols=143 Identities=50% Similarity=0.896 Sum_probs=131.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
|+.+||++|++.+.++++++|+++|.+|+|++++||+|+|+||++++|.+|+|+|||+++||+.+|+++|++|++|++||
T Consensus 140 ~~~~~d~~L~~~~~~~a~~~~~~~~~gG~~~~~sG~~f~t~ae~~~~~~~Ga~~V~ME~aa~a~vA~~~gi~~~~i~~VS 219 (283)
T 1cb0_A 140 MAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMAT 219 (283)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCEESCCEEEEECCSSCCCHHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHcCCceEcceEEEEeeCCcccCHHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCCEEEEEEEE
Confidence 45789999999999999999999995599999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCchHHHHHHHhhhHhccCCCC
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQ 143 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (148)
|+++|..+.++++|+||++.++++.+++.+++.++|++++..+|.+.+..++...+.++|+++
T Consensus 220 d~a~~~~~~~~~~~~e~~~~~~~~~~~~~~lv~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (283)
T 1cb0_A 220 DYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLKNMAQFSVLLPR 282 (283)
T ss_dssp ECTTC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTEECC-
T ss_pred ccccCcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhcccccCC
Confidence 998886334679999999999999999999999999999999999999999988899998875
No 13
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Probab=100.00 E-value=3e-32 Score=223.20 Aligned_cols=119 Identities=46% Similarity=0.733 Sum_probs=113.8
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHH-HcCCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR-SWNAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r-~~GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
|+++||++||+.+.++|+++|+++|++|+|++++||+|||+||+++|| ++|+|+|||+++||+++|+|+|++|++|++|
T Consensus 133 ~~~~~d~~L~~~~~~~a~~~g~~~~~~Gv~~~~~Gp~fet~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~V 212 (270)
T 2a8y_A 133 MADPFCNSLRKLAIETAKELNIKTHESGTYICIEGPRFSTRAESRTWREVYKADIIGMTLVPEVNLACEAQMCYATIAMV 212 (270)
T ss_dssp CSSCSCHHHHHHHHHHHHHHTCCEESCCEEEEECCSSCCCHHHHHHHHHTTCCCEEESSHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEcceEEEEecCCEecCHHHHHHHHHHcCCEEECCcHHHHHHHHHHCCCCEEEEEEE
Confidence 568999999999999999999999889999999999999999999999 9999999999999999999999999999999
Q ss_pred eccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 80 TDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 80 TN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
||++.|. .++++|+||++.++++.+++.+|+.++|+++++
T Consensus 213 sd~a~~~--~~~~~~ee~~~~~~~~~~~~~~lv~~~i~~l~~ 252 (270)
T 2a8y_A 213 TDYDVFA--EIPVTAEEVTRVMAENTEKAKKLLYALIQKLPE 252 (270)
T ss_dssp EECTTSS--SSCCCHHHHHHHHHHTHHHHHHHHHHHHHHCCS
T ss_pred EecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999875 357999999999999999999999999999964
No 14
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix}
Probab=99.98 E-value=7e-32 Score=221.57 Aligned_cols=119 Identities=46% Similarity=0.813 Sum_probs=113.7
Q ss_pred CCcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHH-HcCCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR-SWNAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r-~~GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
|+++||++||+.+.++|+++|+++|++|+|++++||+|||+||+++|| ++|+|+|||+++||+++|+|+|++|++|++|
T Consensus 138 ~~~~~d~~L~~~l~~~a~~~g~~~~~~Gv~~~~~Gp~f~t~ae~~~~~~~~GadaV~Me~a~ea~vA~~~gi~~~~i~~V 217 (275)
T 1wta_A 138 MADPFCEDLRQRLIDSGRRLGYTVHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMV 217 (275)
T ss_dssp CSSCSCHHHHHHHHHHHHHHTCCEESCCEEEEECCSSCCCHHHHHHHHHTSCCSEEESSHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHcCCceecceEEEEecCCEecCHHHHHHHHHHcCCEEEcccHHHHHHHHHHCCCCEEEEEEE
Confidence 567899999999999999999999889999999999999999999999 9999999999999999999999999999999
Q ss_pred eccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 80 TDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 80 TN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
||++.|.. ++++|+||++.++++.+++.+|+.++|++++.
T Consensus 218 sd~a~~~~--~~~~~~e~~~~~~~~~~~~~~lv~~~i~~l~~ 257 (275)
T 1wta_A 218 TDYDVWAD--RPVTAEEVERVMISNVERARRMLYDVIPKLAG 257 (275)
T ss_dssp EECTTSSS--SCCCHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred EccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99998753 67999999999999999999999999999964
No 15
>3nm6_B MTA/SAH nucleosidase; hydrolase; HET: ADE; 1.60A {Helicobacter pylori} SCOP: c.56.2.0 PDB: 3nm5_A* 3nm4_A* 4ffs_A*
Probab=99.73 E-value=2.6e-17 Score=129.31 Aligned_cols=107 Identities=14% Similarity=0.205 Sum_probs=92.3
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCC-CCHHHHHHHHH-cCCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF-SSRAESNLFRS-WNAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~f-ET~AE~r~~r~-~GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
+.|++|++.+.+++++.|+++| .|+|+ +||+| +|++|.+++++ +|+|+|+|.+++++.+|++.|+++++|..|||
T Consensus 122 ~~d~~l~~~~~~~~~~~~~~~~-~G~~~--sgd~f~~~~~~~~~l~~~~ga~~veME~aa~a~~a~~~gi~~~~ir~IsD 198 (230)
T 3nm6_B 122 ETSGSLNALAKKIANEQHIALK-EGVIA--SGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISD 198 (230)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEE-EEEEE--ECSSCCCCHHHHHHHHHHHCCSEEESSHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCEE-EEEEE--ECChhcCCHHHHHHHHHHcCCcEEeccHHHHHHHHHHcCCCEEEEEEEec
Confidence 5699999999999999999999 89886 99999 99999999987 89999999999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
++.+ ..+.+++++++.+.+++. +++.++|++|
T Consensus 199 ~a~~---~~~~~~~~~~~~a~~~~~---~~~~~~l~~l 230 (230)
T 3nm6_B 199 NADE---KAGMSFDEFLEKSAHTSA---KFLKSMVDEL 230 (230)
T ss_dssp CSST---THHHHHHHHHHHHHHHHH---HHHHHHHTTC
T ss_pred CCCC---CCccCHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 9744 345678888877766554 6666666643
No 16
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT; 1.75A {Escherichia coli} SCOP: c.56.2.1 PDB: 1jys_A* 1nc1_A* 1nc3_A* 1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A* 4g89_A*
Probab=99.64 E-value=1.7e-15 Score=119.32 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=91.9
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCC-CHHHHHHHHHc--CCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS-SRAESNLFRSW--NAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fE-T~AE~r~~r~~--GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
++|++|++.+.++++++|+++| .|++ ++||+|. |+++.++++.. |+|+|+|.+++++.+|++.|++++.|..||
T Consensus 122 ~~d~~L~~~~~~~~~~~~~~~~-~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~veME~aa~a~va~~~~ip~~~ir~IS 198 (234)
T 3o4v_A 122 KADDKLIAAAEACIAELNLNAV-RGLI--VSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAIS 198 (234)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEE-EEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCeE-EeeE--EEcCeeeCCHHHHHHHHHHcCCccEeehhHHHHHHHHHHhCCCEEEEEEEe
Confidence 7899999999999999999999 8987 4899995 79999999998 999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~ 120 (148)
|++... .+++..+..+.++....+++.++|++++
T Consensus 199 D~a~~~------~~~~~~~~~~~aa~~~a~~v~~~l~~l~ 232 (234)
T 3o4v_A 199 DVADQQ------SHLSFDEFLAVAAKQSSLMVESLVQKLA 232 (234)
T ss_dssp ECSSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc------chhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 996432 2344555556666677788888887764
No 17
>1odk_A Purine nucleoside phosphorylase; alpha-beta protein, transferase, riken structural genomics/proteomics initiative, RSGI; 1.9A {Thermus thermophilus} SCOP: c.56.2.1 PDB: 1odj_A* 1odi_A 1odl_A
Probab=99.62 E-value=5e-15 Score=117.08 Aligned_cols=102 Identities=11% Similarity=0.073 Sum_probs=88.8
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccc
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 83 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a 83 (148)
++|++|++.+.+++++.|+++| .|+|++..+|.++|+++.++++.+|+++|+|.+.+++.+|++.|++++.|..|+|++
T Consensus 128 ~~d~~L~~~~~~~~~~~~~~~~-~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~~~~a~~~gip~~~ir~IsD~~ 206 (235)
T 1odk_A 128 VPDPEVFRALWRRAEALGYPHR-VGLVASEDAFYATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSNRI 206 (235)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEE-EEEEEEESCTTTCCHHHHHHHHTTTEEEEESSHHHHHHHHHHHTCEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHcCCCeE-EEEEEEeCCCCCCCHHHHHHHHHcCCcEEeccHHHHHHHHHHcCCCEEEEEEEecCc
Confidence 5999999999999999999999 899999999999999999999999999999999999999999999999999999997
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHH
Q psy17033 84 CWRDTGNKVCVADVLKTFKENVEKIT 109 (148)
Q Consensus 84 ~~~~~~~~v~~eeVl~~~~~~~~~~~ 109 (148)
.+. +.++++++.+..++..+.+.
T Consensus 207 ~~~---~~~~~~~~~~~~~~~~~~~l 229 (235)
T 1odk_A 207 GDP---ELAPPEVLQEGVRRMVEVAL 229 (235)
T ss_dssp ---------CHHHHHHHHHHHHHHHH
T ss_pred ccC---ccCCHHHHHHHHHHHHHHHH
Confidence 542 34888988777666655443
No 18
>1vhw_A Purine nucleoside phosphorylase; structural genomics, transferase; HET: ADN; 1.54A {Vibrio cholerae} SCOP: c.56.2.1 PDB: 1vhj_A* 3of3_A* 3occ_A* 1pw7_A* 1pr1_A* 1pr2_A* 1pr4_A* 1pr5_A* 1pr0_A* 1pr6_A* 3onv_A 1pk7_A* 1k9s_A* 1pke_A* 1pk9_A 3ooe_A 3ooh_A 1ecp_A 1a69_A 1oty_A* ...
Probab=99.62 E-value=8.4e-15 Score=117.65 Aligned_cols=109 Identities=16% Similarity=0.064 Sum_probs=94.4
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~ 82 (148)
.++|++|++.+.+++++.|++++ .|++++..++..+|+++.++++++|+++|+|.+.+++.+|+++|+++++|..|+|+
T Consensus 130 ~~~d~~L~~~l~~~~~~~~~~~~-~G~i~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~~~~a~~~gi~~~~I~~IsD~ 208 (253)
T 1vhw_A 130 AIADYKMVKAAEEAAKARGIDVK-VGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDH 208 (253)
T ss_dssp CBCCHHHHHHHHHHHHHTTCCCE-EEEEEECSCSSCSCTTHHHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCCeE-EEEEEEeCccccCcHHHHHHHHHcCCcEEechHHHHHHHHHHcCCCEEEEEEEEcc
Confidence 46899999999999999999998 89998877777799999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy17033 83 DCWRDTGNKVCVADVLKTFKENVEKITKLFVHI 115 (148)
Q Consensus 83 a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~ 115 (148)
+.+ .+.++.+++.+..++..+.+.+.+.++
T Consensus 209 ~~~---~~~~~~~e~~~~~~~~~~~ale~~~~~ 238 (253)
T 1vhw_A 209 IKT---GEQTTSEERQNTFNEMIEIALDSVLIG 238 (253)
T ss_dssp TTT---CCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 754 356899998877776665555544444
No 19
>3qpb_A Uridine phosphorylase; hexamer, NP-I superfamily, pyrimidine salvage pathway, uridi phosphorylase, transition state; HET: R1P; 1.82A {Streptococcus pyogenes serotype M6}
Probab=99.62 E-value=8.3e-16 Score=126.39 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=76.1
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEe-----------CCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCC
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCI-----------EGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~-----------~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm 71 (148)
.++|++|++.+.++|+++|++++ .|+|++. .||+|||++|.++++.+|+++|+|.++|++.+|+++|+
T Consensus 156 ~~~d~~L~~~l~~~a~~~g~~~~-~G~~~s~D~Fy~q~~~~~~~~~~e~~~~~~~~~~~Ga~aVEMEsaala~vA~~~gi 234 (282)
T 3qpb_A 156 AVADLEVTNALVNAAKKLGYTSH-AGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGV 234 (282)
T ss_dssp EECCHHHHHHHHHHHHHHTCCEE-EEEEEEESCHHHHHCGGGSTTHHHHHHHHHHHHHTTCCEECSSHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE-EEEEEEecceecccccccccccHhHHHHHHHHHHcCCeEEeccHHHHHHHHHHcCC
Confidence 35899999999999999999999 8999984 27899999999999999999999999999999999999
Q ss_pred ceeE-EEeeecccccc
Q psy17033 72 LYAA-VAMATDYDCWR 86 (148)
Q Consensus 72 ~~~~-is~VTN~a~~~ 86 (148)
++++ +++|+|++.+.
T Consensus 235 ~~~~il~visn~~~~~ 250 (282)
T 3qpb_A 235 RCGSDFLVVGNQERNA 250 (282)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred CEEEEEEEEEcccccc
Confidence 9999 78999997543
No 20
>1zos_A 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase; transition state, inhibitor, hydrolase; HET: MTM; 1.60A {Streptococcus pneumoniae R6} PDB: 3mms_A*
Probab=99.61 E-value=2.3e-15 Score=117.84 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=94.1
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH-HHHH-HHc-CCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLF-RSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE-~r~~-r~~-GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
++|++|++.+.+++++.++++| .|+ .++||+|.+.+| .+.+ +.+ |+++|+|.+.+++.+|++.|++++.|..||
T Consensus 120 ~~d~~l~~~~~~~~~~~~~~~~-~G~--~~sgd~f~~~~~~~~~l~~~~~g~~~veME~aa~~~~a~~~~~~~~~ir~Is 196 (230)
T 1zos_A 120 ESDKTFVAQIQESLSQLDQNWH-LGL--IATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHTLNLPVLVIRAMS 196 (230)
T ss_dssp ECCHHHHHHHHHTSCTTCCSEE-EEE--EEECSBCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCcEE-Eee--EEECCcccCCHHHHHHHHHhCCCCcEehhhHHHHHHHHHHcCCCEEEEEEec
Confidence 7899999999999999999998 887 478999999998 4554 678 999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|++.+. .+++..+.++.++.++.+++.++|+++
T Consensus 197 D~~~~~------~~~~~~~~~~~aa~~~~~~~~~~l~~l 229 (230)
T 1zos_A 197 DNANHE------ANIFFDEFIIEAGRRSAQVLLAFLKAL 229 (230)
T ss_dssp ECSSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc------chhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 997542 356777777888899999999999876
No 21
>1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A*
Probab=99.61 E-value=1.1e-14 Score=115.11 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=83.9
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~ 82 (148)
.+||++|++.+.+++++.|+++| .|+|++..++..+|+++.++++++|+|+|+|.+++++.+|++.|+++++|..|||+
T Consensus 127 ~~~d~~L~~~~~~~~~~~~~~~~-~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~~~~a~~~gi~~~~i~~IsD~ 205 (235)
T 1z34_A 127 ATASFDVVCALVDAAKELNIPAK-VGKGFSTDLFYNPQTELAQLMNKFHFLAVEMESAGLFPIADLYGARAGCICTVSDH 205 (235)
T ss_dssp CBCCHHHHHHHHHHHHHTTCCCE-EEEEEECSCSSCSCTHHHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCCeE-EEEEeecCcCcCCcHHHHHHHHHcCceEEechHHHHHHHHHHhCCcEEEEEEEEec
Confidence 46899999999999999999998 89987666666678999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHH
Q psy17033 83 DCWRDTGNKVCVADVLKTFKENVEKI 108 (148)
Q Consensus 83 a~~~~~~~~v~~eeVl~~~~~~~~~~ 108 (148)
+.+. +.++++++.+..++..+..
T Consensus 206 ~~~~---~~~~~~~~~~~~~~~~~~a 228 (235)
T 1z34_A 206 ILHH---EETTAEERQNSFQNMMKIA 228 (235)
T ss_dssp SSSC---CC-----HHHHHHHHHHHH
T ss_pred CCCC---ccCCHHHHHHHHHHHHHHH
Confidence 7542 4578888877666655443
No 22
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae 5'-methylthioadenosine/S-adenosyl homocystei nucleosidase, butylthio dadme immucillin A, MTAN, hydrolase; HET: BIG; 2.30A {Vibrio cholerae} SCOP: c.56.2.1
Probab=99.60 E-value=8.3e-15 Score=115.21 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=88.9
Q ss_pred cccCHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCC-CHHHHHHHHH-c-CCCeeecccchHHHHHHHcCCceeEEEe
Q psy17033 3 PAFDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFS-SRAESNLFRS-W-NAHLVNMTLVPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fE-T~AE~r~~r~-~-GaDvVGMStvPEvilAre~Gm~~~~is~ 78 (148)
.++|++|++.+.++++++ |+++| .|++ ++||+|. ++++.+.+++ + |+|+|+|.+++++.+|++.|++++.|..
T Consensus 119 ~~~d~~L~~~~~~~~~~~~~~~~~-~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~veME~aa~a~~a~~~~ip~~~ir~ 195 (231)
T 3dp9_A 119 FKADEKLMTVAEQALAQLPNTHAV-RGLI--CTGDAFVCTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRA 195 (231)
T ss_dssp EECCHHHHHHHHHHHTTSTTCCEE-EEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHHTCCEEEEEE
T ss_pred ecCCHHHHHHHHHHHHhcCCCceE-EEEE--EECCeeeCCHHHHHHHHHhcCCCcEEechHHHHHHHHHHcCCCEEEEEE
Confidence 478999999999999999 89999 8887 5899995 7888888875 6 9999999999999999999999999999
Q ss_pred eeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 79 ATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 79 VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|||++.. +.+.++++.+ +.++.+..+++.++|++|
T Consensus 196 ISD~a~~---~~~~~~~~~~---~~aa~~~a~~v~~~l~~l 230 (231)
T 3dp9_A 196 ISDVADK---ESPLSFEEFL---PLAAKSSSAMVLKMVELL 230 (231)
T ss_dssp EEECSST---THHHHHHHHH---HHHHHHHHHHHHHHHHTC
T ss_pred EecCCCC---cccccHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 9999633 2334455554 445556667888888765
No 23
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria meningitidis serogroup B} SCOP: c.56.2.1
Probab=99.59 E-value=1e-14 Score=114.79 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=88.5
Q ss_pred ccCHHHHHHHHHHHHHhCCc-eecceEEEEeCCCCCCC-HHHHHHHHH-c-CCCeeecccchHHHHHHHcCCceeEEEee
Q psy17033 4 AFDNSTRQIIIDSLKELGFK-FHDKGTAVCIEGPRFSS-RAESNLFRS-W-NAHLVNMTLVPEVVLAKEAGLLYAAVAMA 79 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~-~~~~GvY~~~~GP~fET-~AE~r~~r~-~-GaDvVGMStvPEvilAre~Gm~~~~is~V 79 (148)
++|++|++.+.++++++|++ +| .|++ ++||+|.+ +++.+.+++ + |+++|+|.+++++.+|++.|++++.|..|
T Consensus 123 ~~d~~l~~~~~~~~~~~~~~~~~-~G~~--~sgd~f~~~~~~~~~l~~~~~ga~~veME~aa~a~~a~~~gip~~~ir~I 199 (233)
T 3eei_A 123 ASDGILIEAAKRAARTFEGAAVE-QGLI--VSGDRFVHSSEGVAEIRKHFPEVKAVEMEAAAIAQTCHQLETPFVIIRAV 199 (233)
T ss_dssp ECCHHHHHHHHHHHHTCCSSCEE-EEEE--EECSBCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCcEE-EEEE--EEcceeeCCHHHHHHHHHHcCCceEEechHHHHHHHHHHcCCCEEEEEEE
Confidence 78999999999999999999 88 8987 66999975 555777765 5 99999999999999999999999999999
Q ss_pred eccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 80 TDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 80 TN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
||++... .+.+..+..+.++.+..+++.++|++|
T Consensus 200 sD~a~~~------~~~~~~~~~~~aa~~~~~~v~~~l~~l 233 (233)
T 3eei_A 200 SDSADEK------ADISFDEFLKTAAANSAKMVAEIVKSL 233 (233)
T ss_dssp EECSSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCc------chhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9996331 234455555666777778888888764
No 24
>3bl6_A 5'-methylthioadenosine nucleosidase/S- adenosylhomocysteine nucleosidase; MTAN, alpha and beta proteins, hydrolase; HET: FMC; 1.70A {Staphylococcus aureus}
Probab=99.59 E-value=9.4e-15 Score=114.34 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=89.9
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH-H-HHHHc-CCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-N-LFRSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~-r-~~r~~-GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
++|++|++.+.+++++.++++| .|++ ++||+|.+.+|. + +++.+ |+|+|+|.+.+++.+|++.|++++.|..||
T Consensus 121 ~~d~~l~~~~~~~~~~~~~~~~-~G~~--~sgd~f~~~~~~~~~l~~~~~g~~~veME~a~~~~~a~~~~~~~~~ir~Is 197 (230)
T 3bl6_A 121 QSSKPLIEKVSQVVQQQQLTAK-VGLI--VSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVS 197 (230)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEE-EEEE--EECSSCCCSHHHHHHHHHHCTTEEEEESSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCeE-EeeE--eEcchhhCCHHHHHHHHHhCCCcEEEEchHHHHHHHHHHcCCCEEEEEEec
Confidence 7899999999999999999999 8874 589999999985 3 46778 999999999999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 81 DYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 81 N~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|++.+. .+.+++++. +.++.+..+++.++|+++
T Consensus 198 D~~~~~---~~~~~~~~~---~~aa~~~~~~~~~~l~~~ 230 (230)
T 3bl6_A 198 DLANGE---AEMSFEAFL---EKAAVSSSQTVEALVSQL 230 (230)
T ss_dssp ECSSTT---HHHHHHHHH---HHHHHHHHHHHHHHHTTC
T ss_pred cCCCCc---chhhHHHHH---HHHHHHHHHHHHHHHhhC
Confidence 997542 334555444 556777788888888764
No 25
>1je0_A MTAP;, 5'-methylthioadenosine phosphorylase; alpha-beta protein, transferase; 1.60A {Sulfolobus solfataricus} SCOP: c.56.2.1 PDB: 1jdt_A* 1jdu_A 1jdv_A* 1jdz_A* 1jds_A 1je1_A* 1jp7_A 1jpv_A
Probab=99.58 E-value=9.2e-15 Score=115.47 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=81.8
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~ 82 (148)
.++|++|++.+.+++++.|+++| .|+|++..++..+|+++.++++++|+++|+|.+++++.+|++.|++++.|..|+|+
T Consensus 128 ~~~d~~l~~~~~~~~~~~~~~~~-~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~~~~a~~~gi~~~~ir~IsD~ 206 (236)
T 1je0_A 128 STPDFELTNKLVTSFSKRNLKYY-VGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDN 206 (236)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEE-EEEEEECSCTTCCCTTHHHHHHTTTEEEEESSHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCeE-EEEEEecCcCccCCHHHHHHHHHcCCeEEeccHHHHHHHHHHcCCcEEEEEEEEcc
Confidence 46899999999999999999999 79998777777799999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHH
Q psy17033 83 DCWRDTGNKVCVADVLKTFKE 103 (148)
Q Consensus 83 a~~~~~~~~v~~eeVl~~~~~ 103 (148)
+.+. .+.++++++.+..++
T Consensus 207 ~~~~--~~~~~~~~~~~~~~~ 225 (236)
T 1je0_A 207 LAKG--GIWITKEELEKSVMD 225 (236)
T ss_dssp CC----------CHHHHHHHH
T ss_pred cccC--CccCCHHHHHHHHHH
Confidence 7542 245788887655443
No 26
>3phc_A Purine nucleoside phosphorylase; PNP,immucillin, transferase-transferase inhibitor complex; HET: IM5; 2.00A {Plasmodium falciparum} PDB: 1q1g_A* 1nw4_A* 3fow_A*
Probab=99.56 E-value=6.5e-15 Score=120.74 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=93.7
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH--HHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE--SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE--~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
.++|++|++.+.++|+++|++++ .|++++..||.++|+++ .++++.+|+++|+|.+++++.+|+++|+++++|++|+
T Consensus 129 ~~~d~~L~~~l~~~a~~~g~~~~-~G~v~s~D~Fy~~~~~~~k~~~~~~~Ga~aVEMEsaal~~vA~~~gi~~~~I~~V~ 207 (275)
T 3phc_A 129 AVGDFDVYDTLNKCAQELNVPVF-NGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVD 207 (275)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCE-EEEEEEESCSSCCSSSCCSHHHHHHTTCCEEESSHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CcCCHHHHHHHHHHHHHcCCCeE-EEEEEEeCCCccCchhhHHHHHHHHcCCEEEECcHHHHHHHHHHcCCCEEEEEEEE
Confidence 35899999999999999999998 89999999999999999 6999999999999999999999999999999999998
Q ss_pred cccc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q psy17033 81 DYDC-WRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKD 123 (148)
Q Consensus 81 N~a~-~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~ 123 (148)
|... |. ....+.+ ..++..++..++..+++.+|..++
T Consensus 208 ~~~~~~~--~~~~~~~----~~~~~~~~~~~ialeai~~L~~~~ 245 (275)
T 3phc_A 208 GCPFKWD--EGDFDNN----LVPHQLENMIKIALGACAKLATKY 245 (275)
T ss_dssp ECGGGGG--GTCBCSS----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccc--ccccchH----HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8743 21 1122222 344566666677777777775544
No 27
>1ybf_A AMP nucleosidase; structural genomics, protein structure initiative, PSI, NEW research center for structural genomics, nysgxrc; 2.90A {Bacteroides thetaiotaomicron} SCOP: c.56.2.1
Probab=99.56 E-value=1.2e-14 Score=117.86 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=94.9
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH-HHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE-~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
.++|.+|++.+.++++++|++++ .|+|++..+|-+||++| .++++.+|+++|+|.+++++.+|+++|+++++|++|+|
T Consensus 132 ~~~~~~l~~~l~~~a~~~~~~~~-~G~~~s~d~f~~e~~~e~~~~l~~~g~~~veMEsaal~~~a~~~gv~~~~i~~VsD 210 (268)
T 1ybf_A 132 SLPSFSVLRAISSAIQNKGKDYW-TGTVYTTNRRVWEYDEKFKDYLRSTHASGVDMETATLMTVGFANKIPMGALLLISD 210 (268)
T ss_dssp BCCCHHHHHHHHHHHHTTTCCEE-EEEEEECSCCCCTTCHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEECS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE-EEEEEEeCCCccCCCHHHHHHHHHcCCeEEecCHHHHHHHHHHcCCCEEEEEEEEc
Confidence 35789999999999999999999 89999999999999999 68999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~ 122 (148)
++.... ...+.++..+..+.+.+++.++..+.+..|...
T Consensus 211 ~~~~~~--g~~~~~~~~~~~~~~~~~~i~iale~~~~l~~~ 249 (268)
T 1ybf_A 211 RPMFPE--GVKTEESDQLVTDNFAEEHLMLGIDALEIIREN 249 (268)
T ss_dssp CSSCCS--SCCCCCC------CCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcc--cccCcccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 975422 134455555556667777777888887777544
No 28
>3bsf_A AT4G34840, nucleosidase; alpha-beta, hydrolase; HET: ADE; 2.90A {Arabidopsis thaliana}
Probab=99.53 E-value=2e-14 Score=115.28 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCC-CHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecccc
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS-SRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDC 84 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fE-T~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a~ 84 (148)
|++|++ ++++| .|+ +++||+|. |++|.++++.+|+|+|+|.+++++.+|++.|++++.|..|||++.
T Consensus 148 ~~~L~~---------~~~~~-~G~--i~sgd~f~~~~~~~~~~~~~g~~~veME~aa~a~va~~~~ip~~~Ir~ISD~a~ 215 (254)
T 3bsf_A 148 TPNLIK---------ELNLK-VGR--LSTGDSMDMSPHDEESITANDATVKDMEGAAVAYVADIFKVPTILIKGVTDIVD 215 (254)
T ss_dssp CHHHHH---------HTTCE-EEE--EEECSCSSCCHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEEEEETT
T ss_pred CHHHHh---------CCCeE-Eee--EEECccccCCHHHHHHHHHcCCcEEECcHHHHHHHHHHcCCCEEEEEEEEEcCC
Confidence 666664 46677 787 89999999 999999999999999999999999999999999999999999975
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17033 85 WRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122 (148)
Q Consensus 85 ~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~ 122 (148)
+. .+ +++++.+.++.+..++.+++.++|+.+...
T Consensus 216 ~~---~~-s~~~~~~~~~~a~~~~~~~l~~~l~~l~~~ 249 (254)
T 3bsf_A 216 GN---RP-TSEEFLENLAAVTAKLDESLTKVIDFISGK 249 (254)
T ss_dssp TT---CC-STTTTTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CC---Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 43 23 688888999999999999999999998654
No 29
>2h8g_A 5'-methylthioadenosine nucleosidase; protein-adenine complex, hydrolase; HET: ADE; 1.50A {Arabidopsis thaliana} PDB: 2qsu_A 2qtg_A* 2qtt_A* 3lgs_A*
Probab=99.51 E-value=8.3e-14 Score=112.85 Aligned_cols=95 Identities=13% Similarity=0.125 Sum_probs=85.4
Q ss_pred CceecceEEEEeCCCCCC-CHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccccccCCCCCCCHHHHHHH
Q psy17033 22 FKFHDKGTAVCIEGPRFS-SRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKT 100 (148)
Q Consensus 22 i~~~~~GvY~~~~GP~fE-T~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a~~~~~~~~v~~eeVl~~ 100 (148)
+++| .|+ +++||+|+ |++|.++++++|+|+|+|.+++++.+|++.|++++.|..|||++.+. . .+++++.+.
T Consensus 168 ~~~~-~G~--i~sgd~f~~~~~~~~~l~~~ga~~veME~aa~a~va~~~gip~~~Ir~ISD~a~~~---~-~s~~~~~~~ 240 (267)
T 2h8g_A 168 LNLK-IGR--LSTGDSLDMSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTDLVDGD---K-PTAEEFLQN 240 (267)
T ss_dssp HCCE-EEE--EEECSCSSCCHHHHHHHHHTTCSEEESSHHHHHHHHHHTTCCEEEEEEEEEETTSS---S-CHHHHHHHH
T ss_pred CCeE-Eee--EEECCcccCCHHHHHHHHHcCCeEEeccHHHHHHHHHHcCCCEEEEEEEEECcccc---c-cchHHHHHH
Confidence 4567 787 89999999 59999999999999999999999999999999999999999997542 2 478999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccC
Q psy17033 101 FKENVEKITKLFVHIVPKIAAKD 123 (148)
Q Consensus 101 ~~~~~~~~~~ll~~~i~~l~~~~ 123 (148)
++.++.++.+++.++|+.+....
T Consensus 241 ~~~aa~~~~~~l~~~l~~l~~~~ 263 (267)
T 2h8g_A 241 LTVVTAALEGTATKVINFINGRN 263 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999997543
No 30
>3uaw_A PNP, purine nucleoside phosphorylase DEOD-type; necleoside phosphorylase I (NP-I) family, transferase; HET: ADN GOL; 1.20A {Bacillus cereus} PDB: 2ac7_A 3uav_A* 3uax_A* 1xe3_A 3uay_A* 3uaz_A* 4d8y_A 4d8x_A 4d8v_A 4d98_A 4d9h_A* 4da0_A* 4da6_A* 4da7_A* 4da8_A* 4dab_A* 4dae_A* 4dan_A* 4dao_A* 4dar_A*
Probab=99.50 E-value=1.8e-13 Score=108.89 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=76.9
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccc
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 83 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a 83 (148)
++|++|++.+.++++++|+++| .|++++..++..+|+++.++++.+|+++|+|.+++++.+|+++|+++++|..|||+.
T Consensus 128 ~~d~~L~~~l~~~a~~~g~~~~-~G~~~s~d~f~~~~~~~~~~~~~~g~~~veME~aa~~~va~~~gi~~~~i~~ISD~~ 206 (235)
T 3uaw_A 128 AANFDLLKKAYDAGTEKGLHVR-VGNVLTADVFYRESMDMVKKLGDYGVLAVEMETTALYTLAAKYGVNALSVLTVSDHI 206 (235)
T ss_dssp BCCHHHHHHHHHHHHHHTCCEE-EEEEEECSCSSCSCCHHHHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEEEEEET
T ss_pred cCCHHHHHHHHHHHHHcCCCeE-EEEEEEcCcCccCCHHHHHHHHHcCCcEEEccHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 5799999999999999999999 898865444333999999999999999999999999999999999999999999996
Q ss_pred cccCCCCCCCHHHH
Q psy17033 84 CWRDTGNKVCVADV 97 (148)
Q Consensus 84 ~~~~~~~~v~~eeV 97 (148)
.. .+..+.+|-
T Consensus 207 ~~---~e~~~~~e~ 217 (235)
T 3uaw_A 207 FT---GEETTSEER 217 (235)
T ss_dssp TT---CCBCCTGGG
T ss_pred CC---CCcCChHHH
Confidence 43 233455543
No 31
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica} SCOP: c.56.2.0 PDB: 3tl6_A*
Probab=99.48 E-value=1.2e-13 Score=110.75 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=82.9
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccc
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 83 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a 83 (148)
++|++|++.+.++++++|+++| .|++++..++- +|+++.++++.+|+++|+|.+++++.+|+++|+++++|++|||+.
T Consensus 137 ~~d~~L~~~l~~~a~~~g~~~~-~G~i~s~d~fy-~~~~~~~~~~~~g~~~veMEsaal~~va~~~gi~~~~i~~ISD~~ 214 (242)
T 3u40_A 137 IADFQLCREAVDAAEKLGYRYK-VGNIYSANYFY-DDGDHSGAWKKMGVLAVEMEAAALYMIAARARKQALCMLTISDLC 214 (242)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEE-EEEEEECSCSS-CSSCCCHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHcCCceE-EeEEEEeCCCc-CCHHHHHHHHHcCCcEEEchHHHHHHHHHHcCCCEEEEEEEEcCc
Confidence 5899999999999999999999 89999888884 999999999999999999999999999999999999999999932
Q ss_pred cccCCCCCCCHHHHHHHHHH
Q psy17033 84 CWRDTGNKVCVADVLKTFKE 103 (148)
Q Consensus 84 ~~~~~~~~v~~eeVl~~~~~ 103 (148)
.. . .+.++.+|-.+.+++
T Consensus 215 ~~-~-~e~~~~~e~~~~~~~ 232 (242)
T 3u40_A 215 YG-S-GEKMTAEERRTKFTQ 232 (242)
T ss_dssp ST-T-CCBCCHHHHHHTTHH
T ss_pred cc-C-CCcCCHHHHHHHHHH
Confidence 22 2 356788775544443
No 32
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A*
Probab=99.48 E-value=4.9e-14 Score=114.10 Aligned_cols=109 Identities=10% Similarity=0.114 Sum_probs=82.5
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCC--C--HHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEe
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS--S--RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fE--T--~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~ 78 (148)
.++|++|++.+.++++++|++++ .|+++ +|++|. | +++.++++.+|+|+|+|.+++++.+|++.|++++.|..
T Consensus 151 ~~~d~~L~~~l~~~~~~~~~~~~-~G~i~--sgd~f~~~~~~~~~~~~~~~~ga~~veME~aa~a~va~~~gip~~~Ir~ 227 (267)
T 2b94_A 151 AVADFEVYDTLNKVAQELEVPVF-NGISL--SSDLYYPHKIIPTRLEDYSKANVAVVEMEVATLMVMGTLRKVKTGGIFI 227 (267)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCE-EEEEE--EESSHHHHCCCCTTHHHHHHTTCCEEESSHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCeE-EEEEe--eeCccccCCcchHHHHHHHHcCCeEEeCcHHHHHHHHHHcCCcEEEEEE
Confidence 47999999999999999999998 89886 577787 6 67999999999999999999999999999999999999
Q ss_pred eeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 79 ATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 79 VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
|||++.... ....+.+++.+..++ ..+++.++|.++
T Consensus 228 IsD~~~~~~-~~~~~~~~~~~a~~~----~~~~~l~~l~~l 263 (267)
T 2b94_A 228 VDGCPLKWD-EGDFDNNLVPEKLEN----MIKISLETCARL 263 (267)
T ss_dssp EEECGGGC--------CCCHHHHHH----HHHHHHHHHHHH
T ss_pred EEcccccCc-cccCCHHHHHHHHHH----HHHHHHHHHHHH
Confidence 999964322 112333444444444 344444444443
No 33
>3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} SCOP: c.56.2.1 PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3nsr_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A ...
Probab=99.47 E-value=8.4e-14 Score=112.17 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=70.8
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCC----------------CCHHHHHHHHHcCCCeeecccchHHHHHH
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRF----------------SSRAESNLFRSWNAHLVNMTLVPEVVLAK 67 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~f----------------ET~AE~r~~r~~GaDvVGMStvPEvilAr 67 (148)
+||++|++.+.++|+++|+++| .|+|++ ||+| +||+|+++++.+|+++|+|.+++++.+|+
T Consensus 131 ~~d~~l~~~l~~~a~~~~~~~~-~G~~~s--~d~F~~~~~r~~~~~~~i~~~~~~~~~~~~~~ga~aveME~aa~a~va~ 207 (253)
T 3ddo_A 131 VADFACTTALVEAAKSIGATTH-VGVTAS--SDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCA 207 (253)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEE-EEEEEE--ESCSSGGGTCCCSSSCCCCGGGTTHHHHHHHTTCCEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEE-EEEEEE--cCcccCCcccccccccchhhhHHHHHHHHHHCCceEEeccHHHHHHHHH
Confidence 5899999999999999999999 898875 8888 47899999999999999999999999999
Q ss_pred HcCCceeEEEeeeccc
Q psy17033 68 EAGLLYAAVAMATDYD 83 (148)
Q Consensus 68 e~Gm~~~~is~VTN~a 83 (148)
++|+++++|+++.+.-
T Consensus 208 ~~gi~~~~i~~v~~~R 223 (253)
T 3ddo_A 208 SQGLRAGMVAGVIVNR 223 (253)
T ss_dssp TTTCEEEEEEEECCCT
T ss_pred HcCCcEEEEEEEEEec
Confidence 9999999999777653
No 34
>4g41_A MTA/SAH nucleosidase; mixed alpha/beta, hydrolase, S-adenosylhomocysteine, cleavag; HET: MTA; 1.45A {Streptococcus pyogenes}
Probab=99.42 E-value=4.4e-12 Score=99.70 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=93.8
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHc-CCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSW-NAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~-GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
.++|++|++.+.+.+++.+.++| .|+++...++-.++....++.+.+ |+++|.|.+.+++.+|++.|++++.|..|+|
T Consensus 124 ~~~d~~l~~~~~~~~~~~~~~~~-~G~i~S~d~~~~~~~~~~~l~~~~~g~~~veME~aa~~~va~~~~~p~~~Ir~ISD 202 (236)
T 4g41_A 124 YDCDPQFVAIFKQVLKHEKTNGQ-VGLIATGDSFVAGQDKIDQIKTAFSNVLAVEMEGAAIAQAAHTAGKPFIVVRAMSD 202 (236)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEE-EEEEEECSBCCCCHHHHHHHHHHSTTCCEEESSHHHHHHHHHHTTCCEEEEEEESS
T ss_pred ccCCHHHHHHHHHHHHhcCCCee-eceEEecCCcccCHHHHHHHHHHcCCCeEEechHHHHHHHHHHcCCCEEEEEEEEe
Confidence 46899999999999999999999 899999888887877777777776 9999999999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~ 120 (148)
++.. ..+.+.++.++.+.+ +..+++.++|++|+
T Consensus 203 ~ad~---~~~~~~~~~~~~Aa~---~~a~~v~~~l~~lP 235 (236)
T 4g41_A 203 TAAH---DANITFDQFIIEAGK---RSAQILMTFLENLP 235 (236)
T ss_dssp CTTC---CCCSCHHHHHHHHHH---HHHHHHHHHHHTSC
T ss_pred CCCC---cCcccHHHHHHHHHH---HHHHHHHHHHHHcC
Confidence 9743 345678877765544 45578888888875
No 35
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}
Probab=99.33 E-value=7.4e-12 Score=102.79 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH--HHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE--SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMAT 80 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE--~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VT 80 (148)
.++|++|++.+.++|+++|++++ .|++++..++..+|+++ .++++.+|++ |+|.+.+++.+|+++|+++++|++|+
T Consensus 133 ~~~d~~L~~~l~~~a~~~g~~~~-~G~v~S~D~Fy~e~~~~~k~~~~~~~Ga~-VEMEsaala~vA~~~gv~~~~I~~VS 210 (279)
T 3mb8_A 133 CVATPHVYQALMDAAKELGIEAA-SGIGVTQDYFYQNGILPSKLEMYSKCCDV-IDMEMSGVLGLCQARGIATCGILAVD 210 (279)
T ss_dssp EECCHHHHHHHHHHHHHHTCCCE-EEEEEECSCSCCCCSSCCCHHHHHTTCSE-EESSHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHcCCCeE-EEEEEEECCCccCchHhHHHHHHHHcCCE-EecCHHHHHHHHHHcCCCEEEEEEEE
Confidence 46899999999999999999998 89999999999999998 7999999999 99999999999999999999999998
Q ss_pred ccc
Q psy17033 81 DYD 83 (148)
Q Consensus 81 N~a 83 (148)
|..
T Consensus 211 d~~ 213 (279)
T 3mb8_A 211 GSP 213 (279)
T ss_dssp BCG
T ss_pred CCc
Confidence 753
No 36
>1t8s_A AMP nucleosidase; alpha-beta-alpha sandwich, alpha-beta fold, hydrolase; HET: FMP; 2.60A {Escherichia coli} SCOP: c.56.2.1 PDB: 1t8r_A* 1t8w_A 1t8y_A 2guw_A
Probab=99.21 E-value=5.5e-11 Score=104.45 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=86.0
Q ss_pred ccCHHHHHHHHHHHHH--------hCCceecceEEEEeCCCCC--C--CHHHHHHHHHcCCCeeecccchHHHHHHHcCC
Q psy17033 4 AFDNSTRQIIIDSLKE--------LGFKFHDKGTAVCIEGPRF--S--SRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~--------~gi~~~~~GvY~~~~GP~f--E--T~AE~r~~r~~GaDvVGMStvPEvilAre~Gm 71 (148)
|.+.++.+.+.+.+++ +++++| .|++++ |++| | ++++.++++.+|+++|+|.+.+++.+|++.|+
T Consensus 342 pa~~~l~~~L~~aA~~~~~~~g~~lg~~v~-~G~i~S--gD~Fy~E~r~~~~~~~~~~~GalaVEMEsAAla~vA~~~gv 418 (484)
T 1t8s_A 342 PSIAEVQRALYDATKLVSGRPGEEVKQRLR-TGTVVT--TDDRNWELRYSASALRFNLSRAVAIDMESATIAAQGYRFRV 418 (484)
T ss_dssp CCCHHHHHHHHHHHHHHSSCCGGGGGGTEE-EEEEEE--ESCTTGGGGHHHHHHHHHHHTEEEEESSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhhcccccCCceE-EEEEEE--cCccccccCCHHHHHHHHhcCCeEEeccHHHHHHHHHHcCC
Confidence 5678888888888877 477888 798865 8888 4 48899999999999999999999999999999
Q ss_pred ceeEEEeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q psy17033 72 LYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKD 123 (148)
Q Consensus 72 ~~~~is~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~ 123 (148)
++++|.+|+|++.+.....+.+.+++ .+.+.+++.++..+++..|.+.+
T Consensus 419 p~l~Ir~VSD~a~~~e~~~~~~~~~~---~~~a~~~ai~iaLeai~~L~~~~ 467 (484)
T 1t8s_A 419 PYGTLLCVSDKPLHGEIKLPGQANRF---YEGAISEHLQIGIRAIDLLRAEG 467 (484)
T ss_dssp CEEEEEEEEECTTSSCCC-------------CHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEEecCCcccccccccHHHH---HHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999876543234455554 34556677778888887775443
No 37
>3bje_A Nucleoside phosphorylase, putative; uridine phosphorylase, structural medical structural genomics of pathogenic protozoa consorti MSGPP; HET: R1P; 1.44A {Trypanosoma brucei}
Probab=97.88 E-value=5.4e-05 Score=63.77 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=66.4
Q ss_pred ccCHHHHHHHHHHHHHhC---------CceecceEEEEeC------CC---CC----CCHHHHHHHH---------HcCC
Q psy17033 4 AFDNSTRQIIIDSLKELG---------FKFHDKGTAVCIE------GP---RF----SSRAESNLFR---------SWNA 52 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~g---------i~~~~~GvY~~~~------GP---~f----ET~AE~r~~r---------~~Ga 52 (148)
+.|++|.+.+.++++++| ++++ .|.-++.. |+ +| ++++|++.++ .+|+
T Consensus 210 ~ad~~L~~~l~~aa~~~~~~~~~~~~~~~~~-~G~t~S~D~Fy~~q~r~~grf~~~~~~~~~~~kl~~~~~~~~~~~~gv 288 (349)
T 3bje_A 210 MAHPNITKSICAACDAHNAATGSEADKQQYV-IGTTATASGFYGCQGRRVGRFMKHLTVPNMVEELGSLKFNLSNGVEVV 288 (349)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCCGGGCCCEE-EEEEEECSSSSGGGTCCCGGGGGGCSSTTHHHHHHHCCEEETTEEECE
T ss_pred cCCHHHHHHHHHHHHHcCCccccccccccEE-EEEEEECCccccCCcccccccccccccHHHHHHHHHhhhcchhhhcCc
Confidence 469999999999999987 8888 55444443 33 44 7888888775 6799
Q ss_pred CeeecccchHHHHHHHcCCceeEEEeeecccc
Q psy17033 53 HLVNMTLVPEVVLAKEAGLLYAAVAMATDYDC 84 (148)
Q Consensus 53 DvVGMStvPEvilAre~Gm~~~~is~VTN~a~ 84 (148)
+.|-|-+.+.+.+|+.+|+++++|++|+|...
T Consensus 289 ~~vEMEsaal~~la~~~g~~a~~i~~Vsdn~~ 320 (349)
T 3bje_A 289 TNIEMETSAICYLSDMLGYQAGAACVVVSKRV 320 (349)
T ss_dssp EEEESSHHHHHHHHHHHTCEEEEEEEEEEESS
T ss_pred EEEECcHHHHHHHHHHcCCCEEEEEEEEccCC
Confidence 99999999999999999999999999988653
No 38
>3euf_A Uridine phosphorylase 1; nucleoside phosphorylase, uridine rescue, 5- benzylacyclouridine, alternative splicing, glycosyltransferase, transferase; HET: BAU; 1.90A {Homo sapiens} PDB: 3eue_A* 3nbq_A 3ku4_A 3kuk_A* 3kvr_A 3kvy_A
Probab=97.49 E-value=0.0014 Score=54.69 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCCCH-----------------HHHHHHHHcCCCeeecccchHHHHHH
Q psy17033 6 DNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSSR-----------------AESNLFRSWNAHLVNMTLVPEVVLAK 67 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fET~-----------------AE~r~~r~~GaDvVGMStvPEvilAr 67 (148)
|++|.+.+.++++++ |++++ .|.-++..+ |=.. ..++.++..|+..|=|=+.-=+.+|+
T Consensus 201 D~~L~~~l~~aa~~~~~~~~~-~G~~~S~D~--Fy~~q~r~~~~~~~~~~~~k~~~~~~~~~~gv~avEMEsAAla~va~ 277 (328)
T 3euf_A 201 NKKLVQELLLCSAELSEFTTV-VGNTMCTLD--FYEGQGRLDGALCSYTEKDKQAYLEAAYAAGVRNIEMESSVFAAMCS 277 (328)
T ss_dssp CHHHHHHHHHHHHHHCSSCEE-EEEEEECSC--SSGGGTCSCSSBCCSCHHHHHHHHHHHHHTTEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCeE-EEEeeccCc--cccCccccccccccchhhhHHHHHHHHHHcCCEEEehHHHHHHHHHH
Confidence 899999999999999 99998 776665444 3221 22444667999999999999999999
Q ss_pred HcCCceeEEEeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17033 68 EAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118 (148)
Q Consensus 68 e~Gm~~~~is~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~ 118 (148)
..|++.++|.+|++..... ++..+.+|+++.+ +.+..++|.++|++
T Consensus 278 ~~gv~a~~I~~isdnr~~g--e~~~~~~e~l~~~---~~~~~~~v~~~ik~ 323 (328)
T 3euf_A 278 ACGLQAAVVCVTLLNRLEG--DQISSPRNVLSEY---QQRPQRLVSYFIKK 323 (328)
T ss_dssp HTTCEEEEEEEEEEETTSC--SSCCSCHHHHHHH---HTHHHHHHHHHHHH
T ss_pred HcCCcEEEEEEEEccccCC--ccCCCcHHHHHHH---HHHHHHHHHHHHHH
Confidence 9999999998876643221 2334444555433 33344555555554
No 39
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo sapiens} PDB: 3p0e_A* 2xrf_A
Probab=97.24 E-value=0.0051 Score=50.45 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=76.5
Q ss_pred cCHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCCC-------------H----HHHHHHHHcCCCeeecccchHHHHH
Q psy17033 5 FDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSS-------------R----AESNLFRSWNAHLVNMTLVPEVVLA 66 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fET-------------~----AE~r~~r~~GaDvVGMStvPEvilA 66 (148)
-|++|.+.+.++++++ |+++| .|.-++.. .|=. . ...+.++..|+..|=|=+..=..+|
T Consensus 171 ad~~L~~~l~~aa~~~~~~~~~-~G~~~S~D--~Fy~~q~r~~~~~~~~~~~~k~~~~~~~~~~gv~avEMEsAAl~~va 247 (297)
T 3p0f_A 171 LDKELSEELFNCSKEIPNFPTL-VGHTMCTY--DFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAMC 247 (297)
T ss_dssp CCHHHHHHHHHHHHTSTTCCEE-EEEEEECS--CSSGGGTCSSSSCCCSCHHHHHHHHHHHHHHTEEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCeE-EEEEEECC--ccccCCcccccccccchhhhHHHHHHHHHHcCcEEEehHHHHHHHHH
Confidence 3899999999999998 99998 77655543 3321 1 3345667899999999999999999
Q ss_pred HHcCCceeEEEeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17033 67 KEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118 (148)
Q Consensus 67 re~Gm~~~~is~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~ 118 (148)
+..|++.++|..|.+..... +...+.+++++.+.++.. +|+.++|++
T Consensus 248 ~~~gv~a~~i~~isdnr~~~--~~~~~~~~~~~~~~~~~~---~lv~~~i~~ 294 (297)
T 3p0f_A 248 GLCGLKAAVVCVTLLDRLDC--DQINLPHDVLVEYQQRPQ---LLISNFIRR 294 (297)
T ss_dssp HHTTCEEEEEEEEEEETTTC--SSCCCCHHHHHHHHTHHH---HHHHHHHHH
T ss_pred HHcCCcEEEEEEEEcCccCC--CcccChHHHHHHHHHHHH---HHHHHHHHH
Confidence 99999999999877754321 344555677765555543 555555543
No 40
>3tlq_A Regulatory protein YDIV; anti-FLHD4C2 factor, repress motility, transcription; 1.91A {Escherichia coli}
Probab=84.92 E-value=1.1 Score=34.41 Aligned_cols=43 Identities=7% Similarity=-0.045 Sum_probs=36.4
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+.+..+.+.+.+.|+++|+.+.-||| ||.++..+++.+|+|.+
T Consensus 181 ~~~~~iv~~ii~~a~~l~~~vvAEGV---------Et~~q~~~l~~lG~~~~ 223 (242)
T 3tlq_A 181 RSFEPFIRAIQAQISPCCNCIIAGGI---------DTAEILAQITPFDFHAL 223 (242)
T ss_dssp GGGHHHHHHHHHHHTTTCSEEEECCC---------CSHHHHHHHGGGCCSEE
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEeC---------CcHHHHHHHHHcCCCEE
Confidence 44556777888899999998877886 99999999999999974
No 41
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=82.52 E-value=1.4 Score=36.04 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+-+..+.+.+...|+++|+.+.-+|| ||.++..+++.+|+|.+
T Consensus 265 ~~~~~iv~~ii~la~~lg~~vvAEGV---------Et~~q~~~L~~lG~d~~ 307 (340)
T 4hjf_A 265 AGSAKIVRSVVKLGQDLDLEVVAEGV---------ENAEMAHALQSLGCDYG 307 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECC---------CSHHHHHHHHHTTCCEE
T ss_pred HhHHHHHHHHHHHHHHcCCEEEEEeC---------CcHHHHHHHHHcCCCEe
Confidence 34455667778889999998876885 99999999999998865
No 42
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=78.52 E-value=2.5 Score=33.69 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+..+.+.+.+.|+++|+.+.-+|| ||.++..+++.+|+|.+
T Consensus 218 ~~~iv~~ii~la~~lg~~vvAEGV---------Et~~q~~~l~~lG~d~~ 258 (294)
T 2r6o_A 218 ETQIVTTILALARGLGMEVVAEGI---------ETAQQYAFLRDRGCEFG 258 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCC---------CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEecC---------CcHHHHHHHHHcCCCEE
Confidence 345667788889999999877886 99999999999998864
No 43
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=77.66 E-value=2.4 Score=32.35 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 5 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
.+..+.+.+...|+++|+.+.-+|| ||+++.+.++.+|+|.+
T Consensus 197 ~~~~~l~~i~~~a~~l~~~viaeGV---------Et~~~~~~l~~~G~~~~ 238 (250)
T 4f3h_A 197 ESQEKIREITSRAQPTGILTVAEFV---------ADAQSMSSFFTAGVDYV 238 (250)
T ss_dssp HHHHHHHHTHHHHHHHTCEEEECCC---------CCHHHHHHHHHHTCSEE
T ss_pred hhHHHHHHHHHHHHHcCCEEEEecc---------CCHHHHHHHHHcCCCEE
Confidence 3456677778889999998876886 99999999999999975
No 44
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A 2pe3_A
Probab=76.94 E-value=23 Score=29.14 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=56.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
+.+||+++++.++++|+++|++++ .. + ..|+--.+. -- +.....|++.+.|++-+-
T Consensus 264 ~~~~~~~l~~~l~~~a~~~gIp~q-~~--~-~~g~gGtDa-------------------~~-i~~a~~Gipt~~Igvp~~ 319 (354)
T 2vpu_A 264 GPNINPKLRAFADEVAKKYEIPLQ-VE--P-SPRPTGTDA-------------------NV-MQINKEGVATAVLSIPIR 319 (354)
T ss_dssp STTSCHHHHHHHHHHHHHTTCCCE-EE--E-CCSCCSSTH-------------------HH-HHTSTTCCEEEEEEEEEB
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcE-EE--e-CCCCCccHH-------------------HH-HHHhcCCCCEEEECcccc
Confidence 357999999999999999999977 22 1 222211211 11 111235899999998887
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDW 124 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~~ 124 (148)
+... ..+-++.+++. ...+|+.+++.++..+.+
T Consensus 320 ~~Hs--~~E~~~~~D~~--------~~~~ll~~~l~~l~~~~~ 352 (354)
T 2vpu_A 320 YMHS--QVELADARDVD--------NTIKLAKALLEELKPMDF 352 (354)
T ss_dssp STTS--TTCEEEHHHHH--------HHHHHHHHHHHHCCCCCC
T ss_pred cCcC--cceEeeHHHHH--------HHHHHHHHHHHhccHhhc
Confidence 7433 23555665544 344677777777766654
No 45
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=76.75 E-value=6.9 Score=29.98 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=47.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-.++.+-+.+.+++.|+.+. +.. +......+. +.+...++|.|=.... +.+..+++.|++
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 85 (313)
T 3m9w_A 13 RLERWQKDRDIFVKKAESLGAKVF----VQS---ANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIK 85 (313)
T ss_dssp SSSTTHHHHHHHHHHHHHTSCEEE----EEE---CTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCE
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----EEC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCe
Confidence 578999999999999999988754 222 233333343 4455678887665432 345567788999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 86 vV~~~~ 91 (313)
T 3m9w_A 86 VLAYDR 91 (313)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 987753
No 46
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=76.14 E-value=3.2 Score=31.75 Aligned_cols=41 Identities=7% Similarity=0.143 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
...+.+.+.+.|+++|+++.-+|| ||.++.+.++.+|+|.+
T Consensus 194 ~~~~~~~i~~~a~~~g~~viaeGV---------Et~~~~~~l~~lG~~~~ 234 (259)
T 3s83_A 194 SAKIVRSVVKLGQDLDLEVVAEGV---------ENAEMAHALQSLGCDYG 234 (259)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCC---------CSHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeC---------CCHHHHHHHHhcCCCEe
Confidence 345566777889999998876886 99999999999999864
No 47
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase; EAL-domain, structural genomics, PSI-2; 2.00A {Listeria monocytogenes}
Probab=75.04 E-value=2.7 Score=31.51 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 8 STRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 8 ~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
.+.+.+.+.|+++|+++.-+|| ||+++..+++.+|+|.+
T Consensus 186 ~~~~~i~~~a~~lg~~viaeGV---------Et~~~~~~l~~~G~~~~ 224 (235)
T 3kzp_A 186 LFIKAWANFAQKNKLDFVVEGI---------ETKETMTLLESHGVSIF 224 (235)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE---------CSTHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHcCCEEEEEEe---------cCHHHHHHHHHcCCCEe
Confidence 4556667788999999877897 99999999999999864
No 48
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=73.75 E-value=4 Score=33.40 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 5 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
.+..+.+.+...|+++|+.+.-+|| ||.++.++++.+|+|.+
T Consensus 330 ~~~~~v~~i~~~a~~l~~~vvaEGV---------Et~~~~~~l~~~g~~~~ 371 (400)
T 3sy8_A 330 RSCAVISSVVALAQALGISLVVEGV---------ESDEQRVRLIELGCSIA 371 (400)
T ss_dssp THHHHHHHHHHHHHHHTCEEEECCC---------CCHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHHHHcCCeEEEecC---------CcHHHHHHHHHcCCCEE
Confidence 3455677788889999999877886 99999999999998853
No 49
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=70.93 E-value=11 Score=30.97 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=53.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
+.+|+++|++.++++|+++|++++ . ++ .| -|-|.--+ .....|++.+.|++-+-
T Consensus 263 ~~~~~~~l~~~l~~~a~~~gIp~q-~-~~---~g--------------gGtDa~~i-------~~a~~Gipt~~igvp~~ 316 (355)
T 3kl9_A 263 GHLLLPGMKDFLLTTAEEAGIKYQ-Y-YC---GK--------------GGTDAGAA-------HLKNGGVPSTTIGVCAR 316 (355)
T ss_dssp TEECCHHHHHHHHHHHHHTTCCEE-E-EE---CS--------------SCCTHHHH-------TTSTTCCCEEEEEEEEB
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEE-E-EC---CC--------------cchHHHHH-------HHhCCCCCEEEEccCcC
Confidence 357999999999999999999987 2 32 11 23232111 11125899999998887
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
+... ..+-++.+++. ...+|+.+++.++..
T Consensus 317 ~~Hs--~~E~~~~~Di~--------~~~~ll~~~l~~l~~ 346 (355)
T 3kl9_A 317 YIHS--HQTLYAMDDFL--------EAQAFLQALVKKLDR 346 (355)
T ss_dssp SCSS--SCEEEEHHHHH--------HHHHHHHHHHHTCCH
T ss_pred CCCC--cceEeeHHHHH--------HHHHHHHHHHHHhCH
Confidence 6432 23455665554 334566677766643
No 50
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=70.90 E-value=12 Score=27.95 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=45.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccc---------hHHHHHHHc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLV---------PEVVLAKEA 69 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStv---------PEvilAre~ 69 (148)
.++|-.++.+-+.+.+++.|+.+. +.... .....| ++.+...+.|.|=.... +....+++.
T Consensus 26 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~ 98 (298)
T 3tb6_A 26 SDYIFPSIIRGIESYLSEQGYSML----LTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKN 98 (298)
T ss_dssp SSTTHHHHHHHHHHHHHHTTCEEE----EEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHCCCEEE----EEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhc
Confidence 578889999999999999998754 22222 222223 34455678887765432 233457788
Q ss_pred CCceeEEE
Q psy17033 70 GLLYAAVA 77 (148)
Q Consensus 70 Gm~~~~is 77 (148)
|++++.+.
T Consensus 99 ~iPvV~~~ 106 (298)
T 3tb6_A 99 GIPFAMIN 106 (298)
T ss_dssp TCCEEEES
T ss_pred CCCEEEEe
Confidence 99998764
No 51
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=70.01 E-value=9.9 Score=28.57 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=45.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-..+.+-+.+.|++.|+.+. +.. . ......|.+ .+...+.|.|=.... +.+..+++.|++
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~-~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iP 91 (293)
T 3l6u_A 19 KHEFAQRLINAFKAEAKANKYEAL----VAT-S--QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIP 91 (293)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEE----EEE-C--SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEE----EEC-C--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCC
Confidence 578888999999999999998754 222 2 223333433 444568887654332 334557788999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 92 vV~~~~ 97 (293)
T 3l6u_A 92 VFAIDR 97 (293)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 988753
No 52
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Probab=67.89 E-value=5.6 Score=32.76 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+..+.+.+.+.|+.+|+++.-+|| ||+++..+++.+|+|.+
T Consensus 378 ~~~~~~~i~~~a~~l~~~viaeGV---------Et~~~~~~l~~~g~~~~ 418 (430)
T 3pjx_A 378 KRLFIEAIQRAAHSIDLPLIAERV---------ETEGELSVIREMGLYGV 418 (430)
T ss_dssp HHHHHHHHHHHHHTTTCCEEECCC---------CCHHHHHHHHHTTCSEE
T ss_pred hHHHHHHHHHHHHHCCCcEEEEec---------CCHHHHHHHHHcCCCee
Confidence 344566777889999998876886 99999999999999975
No 53
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=67.25 E-value=6.5 Score=29.56 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=37.5
Q ss_pred HcCCceeEEEeeeccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccCchH
Q psy17033 68 EAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTN 126 (148)
Q Consensus 68 e~Gm~~~~is~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~~~~~~ 126 (148)
..|++.+.++.-..++ ....|-++.+++.+ ..+|+.++|.+|.+.+|+|
T Consensus 306 ~~Giptv~~G~g~~~~--Ht~~E~v~i~dl~~--------~~~ll~~~i~~L~~~d~~p 354 (354)
T 2wzn_A 306 KEGVATAVLSIPIRYM--HSQVELADARDVDN--------TIKLAKALLEELKPMDFTP 354 (354)
T ss_dssp TTCCEEEEEEEEEBST--TSTTCEEEHHHHHH--------HHHHHHHHHHHCCCCCCCC
T ss_pred cCCCCEEEECcccCCC--CcccEEEEHHHHHH--------HHHHHHHHHHhCccccCCC
Confidence 4699999999886654 33357788887654 4478999999999999975
No 54
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A*
Probab=66.80 E-value=6.3 Score=32.95 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 5 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
-+..+.+.+.+.|+.+|+.+.-+|| ||.++..+++.+|+|.+
T Consensus 345 ~~~~iv~~ii~la~~lg~~viAEGV---------Et~~q~~~l~~lG~d~~ 386 (413)
T 3gfz_A 345 TKQAIVASVVRCCEDLGITVVAEGV---------ETLEEWCWLQSVGIRLF 386 (413)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECC---------CSHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC---------CCHHHHHHHHHcCCCEE
Confidence 3445667788889999999877886 99999999999999975
No 55
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=64.01 E-value=16 Score=27.63 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=45.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-.++.+-+.+.|++.|+.+. +.+. .......|.+ .+...+.|.|=.... +.+..+++.|++
T Consensus 15 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 88 (305)
T 3g1w_A 15 GMDYWKRCLKGFEDAAQALNVTVE----YRGA--AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIP 88 (305)
T ss_dssp TSTHHHHHHHHHHHHHHHHTCEEE----EEEC--SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----EeCC--CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCc
Confidence 578889999999999999998764 2222 2233333433 445578886654432 234456788999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 89 vV~~~~ 94 (305)
T 3g1w_A 89 IVLFDS 94 (305)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 887653
No 56
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=63.02 E-value=46 Score=25.05 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=47.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccc----hHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV----PEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStv----PEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.|++.|+.+. +....+ .-+-..=.+++...+.|-|=.... +....+++.|++++.+.
T Consensus 21 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~ 95 (294)
T 3qk7_A 21 NNSTFLEMISWIGIELGKRGLDLL----LIPDEP-GEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALG 95 (294)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEE----EEEECT-TCCCHHHHHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEES
T ss_pred cChhHHHHHHHHHHHHHHCCCEEE----EEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEEC
Confidence 467888999999999999998765 233333 223333456777778886654322 33455778899998764
Q ss_pred e
Q psy17033 78 M 78 (148)
Q Consensus 78 ~ 78 (148)
-
T Consensus 96 ~ 96 (294)
T 3qk7_A 96 R 96 (294)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=62.69 E-value=42 Score=25.27 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=46.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHH-HH---HHHHHcCCCeeecccc------hHHHHHHHcCC
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRA-ES---NLFRSWNAHLVNMTLV------PEVVLAKEAGL 71 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~A-E~---r~~r~~GaDvVGMStv------PEvilAre~Gm 71 (148)
.++|..++.+-+.+.|++.|+.+. + .....|..+. |. +.+...|.|.|=.... +.+..+++.|+
T Consensus 14 ~~~~~~~~~~gi~~~a~~~g~~~~----~--~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~gi 87 (297)
T 3rot_A 14 QDPYWTSLFQGAKKAAEELKVDLQ----I--LAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNI 87 (297)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCEEE----E--ECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHHHhCcEEE----E--ECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 478889999999999999987654 2 2234453333 33 3445578887655432 23445778899
Q ss_pred ceeEEEe
Q psy17033 72 LYAAVAM 78 (148)
Q Consensus 72 ~~~~is~ 78 (148)
+++.+.-
T Consensus 88 PvV~~~~ 94 (297)
T 3rot_A 88 PVIAVDT 94 (297)
T ss_dssp CEEEESC
T ss_pred CEEEEcC
Confidence 9987753
No 58
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=62.20 E-value=24 Score=27.78 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=59.7
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCC--CCCCCHHHH-HHHHHc-CCCeeeccc-chHHHHHHHcCCceeEEEe
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEG--PRFSSRAES-NLFRSW-NAHLVNMTL-VPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~G--P~fET~AE~-r~~r~~-GaDvVGMSt-vPEvilAre~Gm~~~~is~ 78 (148)
.|+.+-...+.+.+.+.|++.. +..+....- |.++...|. +.++.. +..+..+.. ...+..|.++|+..+.+..
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~~I-E~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G~~~V~i~~ 100 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYARI-EATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFI 100 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCSEE-EEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTTCSEEEEEE
T ss_pred CcCHHHHHHHHHHHHHcCcCEE-EEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCCCCEEEEEE
Confidence 3667777777788888999887 443322211 333445544 444443 555655543 3345568999999988877
Q ss_pred eeccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17033 79 ATDYDCWRDTGNKVCVADVLKTFKENVEKITK 110 (148)
Q Consensus 79 VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ 110 (148)
-++...... .-..+.++.++.+++..+.+++
T Consensus 101 ~~S~~h~~~-~~~~~~~e~~~~~~~~v~~a~~ 131 (295)
T 1ydn_A 101 SASEGFSKA-NINCTIAESIERLSPVIGAAIN 131 (295)
T ss_dssp ESCHHHHHH-HTSSCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 554211100 1134667777666665554443
No 59
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=61.77 E-value=6.7 Score=32.86 Aligned_cols=41 Identities=5% Similarity=-0.085 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
...+.+.+.+.|+++|+.+.-+|| ||.++..+++.+|+|.+
T Consensus 212 ~~~il~~ii~la~~lg~~vvAEGV---------Et~~q~~~l~~lG~d~~ 252 (431)
T 2bas_A 212 YEHVLYSISLLARKIGAALLYEDI---------EANFQLQYAWRNGGRYF 252 (431)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECC---------CSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeC---------CCHHHHHHHHHcCCCEE
Confidence 355667778889999999877886 99999999999998864
No 60
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=61.40 E-value=18 Score=26.99 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=45.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-.++.+-+.+.+++.|+.+. +... ......| ++.+...|+|.|=.... +.+..+++.|++
T Consensus 16 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 88 (291)
T 3l49_A 16 DHDWDLKAYQAQIAEIERLGGTAI----ALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIP 88 (291)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEE----EEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----EEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCc
Confidence 578888999999999999998754 2222 2222223 34555678888765433 233457778999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 89 vV~~~~ 94 (291)
T 3l49_A 89 LFTVDT 94 (291)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 987753
No 61
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=61.35 E-value=14 Score=28.71 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.6
Q ss_pred ccCHHH---HHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc
Q psy17033 4 AFDNST---RQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59 (148)
Q Consensus 4 ~Yd~~L---r~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt 59 (148)
++.|++ ++.+..+|++.|+++ |+|. ..+.+.+.++.+|.+.+.|++
T Consensus 190 ~~~p~v~~a~~~iv~aa~a~G~~~---~v~~-------~d~~~~~~~~~~G~~~~s~~~ 238 (256)
T 1dxe_A 190 ASHPDVQKAIQHIFNRASAHGKPS---GILA-------PVEADARRYLEWGATFVAVGS 238 (256)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCCE---EEEC-------CSHHHHHHHHHTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCce---EEec-------CCHHHHHHHHHcCCCEEEech
Confidence 344544 666777888888875 4532 268899999999999988764
No 62
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=61.14 E-value=15 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHcCCCee-ecccchHHHHHHHcCCceeEE
Q psy17033 39 SSRAESNLFRSWNAHLV-NMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvV-GMStvPEvilAre~Gm~~~~i 76 (148)
.++.=.+.-+..|.+.+ |..|..|+..|.++|..|+++
T Consensus 97 ~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 97 LTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp CCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHhCCCEEEecCCHHHHHHHHHCCCCEEEE
Confidence 34544566667887766 888888888888888888877
No 63
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=59.35 E-value=25 Score=27.02 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=24.9
Q ss_pred CHHHHHHHHHcCCCee-ecccchHHHHHHHcCCceeEE
Q psy17033 40 SRAESNLFRSWNAHLV-NMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 40 T~AE~r~~r~~GaDvV-GMStvPEvilAre~Gm~~~~i 76 (148)
++.=.+.-+.+|.+.+ |..|..|+..|.++|..|+++
T Consensus 108 d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 108 TEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp CHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEE
T ss_pred CHHHHHHHHHhCCCEEEeeCCHHHHHHHHHCCCCEEEE
Confidence 4444455566777765 777777777777777777776
No 64
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=57.55 E-value=26 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecc-cc-----hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT-LV-----PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMS-tv-----PEvilAre~Gm~ 72 (148)
.+||-.++.+-+.+.+++.|+.+. + +. +..+...|. +.+...+.|.|=+. .- +....+++.|++
T Consensus 12 ~~~f~~~~~~gi~~~~~~~g~~~~----~-~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 84 (283)
T 2ioy_A 12 NNPFFVTLKNGAEEKAKELGYKII----V-ED--SQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIP 84 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEE----E-EE--CTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhcCcEEE----E-ec--CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHCCCe
Confidence 578888999999999999988653 2 22 233333343 34556788865442 22 234456778999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 85 vV~~~ 89 (283)
T 2ioy_A 85 VITID 89 (283)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 87663
No 65
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=57.22 E-value=21 Score=27.26 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=46.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccch------HHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLVP------EVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStvP------EvilAre~Gm~ 72 (148)
.++|-.++.+-+.+.|+++|+.+. +.. .......|.+ .+...+.|.|=..... .+..+++.|++
T Consensus 14 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~---~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giP 86 (330)
T 3uug_A 14 SSARWIDDGNNIVKQLQEAGYKTD----LQY---ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIK 86 (330)
T ss_dssp SSTHHHHHHHHHHHHHHHTTCEEE----EEE---CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCE
T ss_pred cchHHHHHHHHHHHHHHHcCCEEE----Eee---CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCC
Confidence 578889999999999999998754 222 2333334443 4445688876654432 24567888999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 87 vV~~~~ 92 (330)
T 3uug_A 87 VIAYDR 92 (330)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 987643
No 66
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=56.95 E-value=6.5 Score=29.59 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCe
Q psy17033 8 STRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 8 ~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDv 54 (148)
.....++..|++.|+++...|+|-...|-..+.+.|-..|+.+|-+-
T Consensus 121 ~hn~~lR~~A~~kG~~L~e~Gl~~~~~g~~i~~~sE~~If~~LGL~y 167 (174)
T 1jaj_A 121 SYLIRIRAALKKKNYKLNQYGLFKNQTLVPLKITTEKELIKELGFTY 167 (174)
T ss_dssp HHHHHHHHHHHHTTEEEETTEEEETTEEECCCCSSHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHcCCCcCccccccCCCCcccCCCCHHHHHHHcCCCC
Confidence 33445556677789999889998544444577777888888888553
No 67
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=56.91 E-value=59 Score=24.29 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=44.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeec-cc---chHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM-TL---VPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGM-St---vPEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+.+. +....+..-.-..-++.+...+.|.|=. +. -+.+..+++.|++++.+.
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 19 VNHILDQFLSSMVREAGAVNYFVL----PFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYNDPRVQFLLKQKFPFVAFG 94 (287)
T ss_dssp SCCTHHHHHHHHHHHHHHTTCEEE----ECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTCHHHHHHHHTTCCEEEES
T ss_pred CChhHHHHHHHHHHHHHHcCCEEE----EEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCcHHHHHHHhcCCCEEEEC
Confidence 578889999999999999998653 2222221111223356667778885433 22 133445677899988764
No 68
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=56.65 E-value=18 Score=27.71 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+.+.+...++++|+.+ ..+| =||+++...++.+|+|.+
T Consensus 210 ~l~~ii~~~~~~~~~v-------iaeG--VEt~~~~~~l~~lG~~~~ 247 (268)
T 3hv8_A 210 ILKGLIAELHEQQKLS-------IVPF--VESASVLATLWQAGATYI 247 (268)
T ss_dssp HHHHHHHHHHHTTCEE-------EECC--CCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCCCE-------EEEe--eCCHHHHHHHHHcCCCEe
Confidence 3445555667666654 3444 699999999999999975
No 69
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=56.60 E-value=11 Score=30.91 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=30.8
Q ss_pred cccCHHHHHHH---HHHHHHhCCceecceEEEEeCCCCCC-CHHHHHHHHHcCCCeeecc
Q psy17033 3 PAFDNSTRQII---IDSLKELGFKFHDKGTAVCIEGPRFS-SRAESNLFRSWNAHLVNMT 58 (148)
Q Consensus 3 ~~Yd~~Lr~~~---~~~a~~~gi~~~~~GvY~~~~GP~fE-T~AE~r~~r~~GaDvVGMS 58 (148)
+||+|.+.+.+ .+.|++.|+++ |++ |= +. .|++.+.++.+|.|-+.|+
T Consensus 226 ~~~~p~v~~ai~~vv~aar~aG~~v---gvc----ge-~~~dp~~~~~l~~lG~~~~si~ 277 (324)
T 2xz9_A 226 QPFHPAILRLVKMVIDAAHKEGKFA---AMC----GE-MAGDPLAAVILLGLGLDEFSMS 277 (324)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCEE---EEC----SG-GGGCHHHHHHHHHHTCCEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCce---eec----Cc-cCCCHHHHHHHHHCCCCEEEEC
Confidence 56778655544 55566666653 333 32 32 7789999999998876544
No 70
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=55.38 E-value=61 Score=24.21 Aligned_cols=71 Identities=6% Similarity=-0.077 Sum_probs=44.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH----HHHHHHcCCCeeecccc----hHHHHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE----SNLFRSWNAHLVNMTLV----PEVVLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE----~r~~r~~GaDvVGMStv----PEvilAre~Gm~~ 73 (148)
.++|-.++.+-+.+.+++.|+.+. ++..+...+...+ ++.+...+.|.|=.... +....+++.|+++
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPv 93 (290)
T 2rgy_A 19 FGSYYGTILKQTDLELRAVHRHVV-----VATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRMHPKM 93 (290)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEE-----EECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSE
T ss_pred CCchHHHHHHHHHHHHHHCCCEEE-----EEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHHHHhhcCCCE
Confidence 467888899999999999998653 2223333333333 45566678886543221 2233466789998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 94 V~~~ 97 (290)
T 2rgy_A 94 VFLN 97 (290)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8764
No 71
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=54.68 E-value=31 Score=25.35 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=45.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeeccc-----chHHHHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL-----VPEVVLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMSt-----vPEvilAre~Gm~~ 73 (148)
.++|-.++.+-+.+.+++.|+.+. +.... .....|. +.+...+.|.|=... -+....+++.|+++
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPv 85 (272)
T 3o74_A 13 ENPSYARIAKQLEQGARARGYQLL----IASSD---DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPV 85 (272)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEE----EEECT---TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCE
T ss_pred cChhHHHHHHHHHHHHHHCCCEEE----EEeCC---CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCE
Confidence 578889999999999999998764 22222 2223333 345556888655432 34556678889999
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 86 V~~~ 89 (272)
T 3o74_A 86 IAID 89 (272)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8664
No 72
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=54.60 E-value=81 Score=25.21 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeC--CCCCCCHHHHHHHHHc----CCCeeecc-cchHHHHHHHcCCceeEE
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIE--GPRFSSRAESNLFRSW----NAHLVNMT-LVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~--GP~fET~AE~r~~r~~----GaDvVGMS-tvPEvilAre~Gm~~~~i 76 (148)
.|+.+-.-.+.+...+.|++.. |..+...+ -|.+.-+.|. ++.+ |..+.++. ....+-.|.++|+..+.+
T Consensus 24 ~~~~e~k~~i~~~L~~~Gv~~I-E~g~~~~~~~~p~~~d~~~~--~~~~~~~~~~~~~~l~~~~~~i~~a~~~g~~~v~i 100 (307)
T 1ydo_A 24 WIATEDKITWINQLSRTGLSYI-EITSFVHPKWIPALRDAIDV--AKGIDREKGVTYAALVPNQRGLENALEGGINEACV 100 (307)
T ss_dssp CCCHHHHHHHHHHHHTTTCSEE-EEEECSCTTTCGGGTTHHHH--HHHSCCCTTCEEEEECCSHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEE-EECCCcCcccccccCCHHHH--HHHhhhcCCCeEEEEeCCHHhHHHHHhCCcCEEEE
Confidence 4566666666777778899887 55453222 2666555543 3443 44554443 344567789999999999
Q ss_pred EeeeccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17033 77 AMATDYDCWRDTGNKVCVADVLKTFKENVEKITK 110 (148)
Q Consensus 77 s~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ 110 (148)
..-++...... .-..+.+|+++.+.+....+++
T Consensus 101 ~~~~sd~~~~~-~l~~s~~e~l~~~~~~v~~ak~ 133 (307)
T 1ydo_A 101 FMSASETHNRK-NINKSTSESLHILKQVNNDAQK 133 (307)
T ss_dssp EEESSHHHHHT-TTCSCHHHHHHHHHHHHHHHHH
T ss_pred EeecCHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 88776432112 2235788888877777665554
No 73
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4
Probab=53.54 E-value=39 Score=26.64 Aligned_cols=81 Identities=11% Similarity=0.087 Sum_probs=50.6
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHH-HHcCCceeEEEeeec
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLA-KEAGLLYAAVAMATD 81 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilA-re~Gm~~~~is~VTN 81 (148)
.++++++.+.++++|+++|+++.. . .. .| -|-|. ..++ ...|++.+.|++-..
T Consensus 255 ~~~~~~l~~~~~~~a~~~gi~~~~-~--~~-~~--------------ggsDa--------~~~~~~~~gipt~~lg~~~~ 308 (348)
T 1ylo_A 255 LIAPPKLTAWIETVAAEIGVPLQA-D--MF-SN--------------GGTDG--------GAVHLTGTGVPTLVMGPATR 308 (348)
T ss_dssp CBCCHHHHHHHHHHHHHHTCCCEE-E--EC-SS--------------CCCHH--------HHHHTSTTCCCEEEEECCCB
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEE-e--ec-CC--------------CcchH--------HHHHHhcCCCCEEEECcccC
Confidence 468999999999999999998762 1 11 11 13232 1122 346999998888776
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17033 82 YDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l 119 (148)
+. ....|-++.+++.... +++..++..+
T Consensus 309 ~~--Hs~~E~~~~~d~~~~~--------~ll~~~~~~l 336 (348)
T 1ylo_A 309 HG--HCAASIADCRDILQME--------QLLSALIQRL 336 (348)
T ss_dssp SC--SSSCEEEEHHHHHHHH--------HHHHHHHHTC
T ss_pred cC--CCcceEeeHHHHHHHH--------HHHHHHHHHh
Confidence 53 3334667777765444 4555555554
No 74
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=52.78 E-value=20 Score=28.61 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=32.0
Q ss_pred ccCHHH---HHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc
Q psy17033 4 AFDNST---RQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59 (148)
Q Consensus 4 ~Yd~~L---r~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt 59 (148)
+..|++ ++.+...|++.|+++ |++. ..|.+.+.++.+|.+.+.|++
T Consensus 211 ~~~p~v~~a~~~iv~aaraaG~~~---gv~~-------~d~~~a~~~~~~G~~~~s~~~ 259 (287)
T 2v5j_A 211 PQHPEVQAAIEQAIVQIRESGKAP---GILI-------ANEQLAKRYLELGALFVAVGV 259 (287)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTSEE---EEEC-------CCHHHHHHHHHTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCee---EEec-------CCHHHHHHHHHhCCCEEEECc
Confidence 345544 466667788888875 4532 267888999999988887764
No 75
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=51.86 E-value=30 Score=27.14 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt 59 (148)
.++.+...|++.|+++ |++ ...+.+.+.++.+|.+.+.|++
T Consensus 198 a~~~iv~aa~aaG~~~---~v~-------~~d~~~a~~~~~~G~~~~s~~~ 238 (267)
T 2vws_A 198 IIETSIRRIRAAGKAA---GFL-------AVAPDMAQQCLAWGANFVAVGV 238 (267)
T ss_dssp HHHHHHHHHHHTTCEE---EEE-------CSSHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCeE---EEe-------cCCHHHHHHHHHCCCCEEEEch
Confidence 4466777788888764 553 2378899999999999988765
No 76
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=51.63 E-value=48 Score=26.18 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=60.6
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCC--CCCCCHHHHH-HHHHc-CCCeeecc-cchHHHHHHHcCCceeEEEe
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEG--PRFSSRAESN-LFRSW-NAHLVNMT-LVPEVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~G--P~fET~AE~r-~~r~~-GaDvVGMS-tvPEvilAre~Gm~~~~is~ 78 (148)
.|+.+-.-.+.+...+.|++.. |..+..... |.+.-..|.. .++.. |..+.++. ....+-.|.++|+..+.|..
T Consensus 23 ~~~~e~k~~i~~~L~~~Gv~~I-E~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~ag~~~v~i~~ 101 (298)
T 2cw6_A 23 IVSTPVKIKLIDMLSEAGLSVI-ETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFG 101 (298)
T ss_dssp CCCHHHHHHHHHHHHHTTCSEE-CCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEECCSHHHHHHHHHTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCcCEE-EECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEcCCHHhHHHHHHCCCCEEEEEe
Confidence 3555555566666778899887 444422222 6666555443 22333 44444433 34567789999999999987
Q ss_pred eeccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17033 79 ATDYDCWRDTGNKVCVADVLKTFKENVEKITK 110 (148)
Q Consensus 79 VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ 110 (148)
.++...-.. .-..+.+++++.+.+..+.+++
T Consensus 102 ~~sd~~~~~-~~~~~~~e~l~~~~~~i~~a~~ 132 (298)
T 2cw6_A 102 AASELFTKK-NINCSIEESFQRFDAILKAAQS 132 (298)
T ss_dssp ESCHHHHHH-HHSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 766321110 0124667777777666555544
No 77
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=51.39 E-value=75 Score=24.28 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=43.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCC-HHHH---HHHHHcCCCeeeccc------chHHHHHHHcCC
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS-RAES---NLFRSWNAHLVNMTL------VPEVVLAKEAGL 71 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET-~AE~---r~~r~~GaDvVGMSt------vPEvilAre~Gm 71 (148)
.++|-..+++-+.+.++++|+.+. +.+|.-.. ..+. +.+...|+|.|=... .+.+..|++.|+
T Consensus 14 ~~~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~~gi 86 (316)
T 1tjy_A 14 GVGFFTSGGNGAQEAGKALGIDVT-------YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGV 86 (316)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEE-------ECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHhCCEEE-------EECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcC
Confidence 467888899999999999886543 22333333 3333 344456889754432 223445788899
Q ss_pred ceeEEE
Q psy17033 72 LYAAVA 77 (148)
Q Consensus 72 ~~~~is 77 (148)
+++.+.
T Consensus 87 pvV~~d 92 (316)
T 1tjy_A 87 KILTWD 92 (316)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 998774
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=50.94 E-value=69 Score=23.34 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=45.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcC-CCeeecccc------hHHHHHHHcCC
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWN-AHLVNMTLV------PEVVLAKEAGL 71 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~G-aDvVGMStv------PEvilAre~Gm 71 (148)
.++|-..+.+-+.+.+++.|+.+. ++..........|. +.+...| .|.|=.... +....+++.|+
T Consensus 11 ~~~~~~~~~~gi~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~i 85 (276)
T 3ksm_A 11 SNAYWRQVYLGAQKAADEAGVTLL-----HRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNI 85 (276)
T ss_dssp SSTHHHHHHHHHHHHHHHHTCEEE-----ECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE-----EECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 578889999999999999887643 11111223333343 3445567 887665442 33455778899
Q ss_pred ceeEEEe
Q psy17033 72 LYAAVAM 78 (148)
Q Consensus 72 ~~~~is~ 78 (148)
+++.+.-
T Consensus 86 pvV~~~~ 92 (276)
T 3ksm_A 86 PVLVVDS 92 (276)
T ss_dssp CEEEESS
T ss_pred cEEEEec
Confidence 9988743
No 79
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=50.89 E-value=27 Score=22.25 Aligned_cols=31 Identities=19% Similarity=0.420 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17033 91 KVCVADVLKTFKENVEKITKLFVHIVPKIAA 121 (148)
Q Consensus 91 ~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~~ 121 (148)
.+|.+||++.-+++-++++++...+|.+..+
T Consensus 17 ~lsdeevme~hk~adermK~~w~~Ii~KY~~ 47 (63)
T 2yfv_C 17 KLSDEEVMERHKKADENMKRVWSQIIQKYES 47 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999865
No 80
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=50.81 E-value=35 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=26.2
Q ss_pred CHHHHHHHHHcCCCee-ecccchHHHHHHHcCCceeEE
Q psy17033 40 SRAESNLFRSWNAHLV-NMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 40 T~AE~r~~r~~GaDvV-GMStvPEvilAre~Gm~~~~i 76 (148)
.+.-.+..+..|.+++ |-+|..|+..|.++|..|+++
T Consensus 93 d~~v~~~~~~~g~~~i~G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 93 LEEVAALAQARGVPYLPGVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp CHHHHHHHHHHTCCEEEEECSHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHhCCCEEecCCCHHHHHHHHHCCCCEEEE
Confidence 3444566667777765 777777777788888888777
No 81
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}
Probab=50.69 E-value=83 Score=24.84 Aligned_cols=72 Identities=8% Similarity=-0.060 Sum_probs=46.5
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~ 82 (148)
.++++++.+.++++|++.|+++. ..++ .. . |.| .-- +.....|++.+.|+....+
T Consensus 240 ~~~~~~l~~~~~~~a~~~gi~~q-~~~~--~~---G------------GsD------~~~-~~~s~~Gipt~~lG~~~~~ 294 (321)
T 3cpx_A 240 MIPRKKYVNRIIELARQTDIPFQ-LEVE--GA---G------------ASD------GRE-LQLSPYPWDWCFIGAPEKD 294 (321)
T ss_dssp SCCCHHHHHHHHHHHTTSSCCEE-EEEC--SS---C------------CCH------HHH-HHHSSSCCBCCBEECEEBS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEE-EEeC--CC---C------------Ccc------HHH-HHHhCCCCCEEEEchhhcc
Confidence 46789999999999999999876 2221 11 1 212 111 1223469999999998876
Q ss_pred ccccCCCCCCCHHHHHHHH
Q psy17033 83 DCWRDTGNKVCVADVLKTF 101 (148)
Q Consensus 83 a~~~~~~~~v~~eeVl~~~ 101 (148)
... ..|-++.+++....
T Consensus 295 ~Hs--~~E~~~~~dl~~~~ 311 (321)
T 3cpx_A 295 AHT--PNECVHKKDIESMV 311 (321)
T ss_dssp TTS--TTCEEEHHHHHHHH
T ss_pred cch--hhhheeHHHHHHHH
Confidence 543 34667777766444
No 82
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=49.50 E-value=27 Score=26.03 Aligned_cols=69 Identities=12% Similarity=-0.010 Sum_probs=43.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc---hHHHHHHHcCCceeE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV---PEVVLAKEAGLLYAA 75 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv---PEvilAre~Gm~~~~ 75 (148)
.++|-.++.+-+.+.+++.|+.+. +. .... ....|. +.+...+.|.|=.... +....+++.|++++.
T Consensus 18 ~~~~~~~~~~gi~~~~~~~g~~~~----~~-~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~ 90 (276)
T 3jy6_A 18 DDYFSTELFKGISSILESRGYIGV----LF-DANA--DIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVS 90 (276)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCEEE----EE-ECTT--CHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEE
T ss_pred CchHHHHHHHHHHHHHHHCCCEEE----EE-eCCC--CHHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEE
Confidence 567888999999999999988754 22 2222 222333 4455567776654432 233446678999887
Q ss_pred EE
Q psy17033 76 VA 77 (148)
Q Consensus 76 is 77 (148)
+.
T Consensus 91 i~ 92 (276)
T 3jy6_A 91 VD 92 (276)
T ss_dssp ES
T ss_pred Ee
Confidence 64
No 83
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=48.97 E-value=44 Score=24.85 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=45.7
Q ss_pred CcccCHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc-h-----HHHHHHHcCC
Q psy17033 2 EPAFDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV-P-----EVVLAKEAGL 71 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv-P-----EvilAre~Gm 71 (148)
.++|-.++.+-+.+.++++ |+.+. ...+.........+. +.+...+.|.|=.... + -+..+++.|+
T Consensus 20 ~~~~~~~~~~gi~~~a~~~~g~~~~----~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~i 95 (304)
T 3gbv_A 20 EGEYWTDVQKGIREAVTTYSDFNIS----ANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGI 95 (304)
T ss_dssp TTSHHHHHHHHHHHHHHHTGGGCEE----EEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHHHHhCCeE----EEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCC
Confidence 5788899999999999988 77654 111112223333443 4455678887655442 2 2445777899
Q ss_pred ceeEEEe
Q psy17033 72 LYAAVAM 78 (148)
Q Consensus 72 ~~~~is~ 78 (148)
+++.+.-
T Consensus 96 PvV~~~~ 102 (304)
T 3gbv_A 96 PYIYIDS 102 (304)
T ss_dssp CEEEESS
T ss_pred eEEEEeC
Confidence 9887653
No 84
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=48.25 E-value=13 Score=25.62 Aligned_cols=50 Identities=4% Similarity=0.060 Sum_probs=36.2
Q ss_pred cceEEEEeCCCCCCCHHH-HHHHHHcCCCeeecccc----hHHHHHHHcCCceeEEE
Q psy17033 26 DKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLV----PEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 26 ~~GvY~~~~GP~fET~AE-~r~~r~~GaDvVGMStv----PEvilAre~Gm~~~~is 77 (148)
..+.|+..++|.-.|.++ .++++..|...|=|-+- |+. -...|+.|..+.
T Consensus 14 ~~~~~i~s~~p~~~t~~df~~~l~~~gi~~Iv~l~~~~~~~~~--~~~~~~~~~~~p 68 (159)
T 1rxd_A 14 KNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTL--VEKEGIHVLDWP 68 (159)
T ss_dssp TTEEEEECCCCCGGGHHHHHHHHHHTTEEEEEECSCCCSCCHH--HHHTTCEEEECC
T ss_pred CCceEEEeCCCccccHHHHHHHHHHcCCCEEEEcCCCccCHHH--HHHcCCEEEeCC
Confidence 388999999999999999 89999999866544321 222 234577776544
No 85
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=47.42 E-value=26 Score=28.23 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCC-------CCHHH-HHHHHHcCCCeeeccc
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRF-------SSRAE-SNLFRSWNAHLVNMTL 59 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~f-------ET~AE-~r~~r~~GaDvVGMSt 59 (148)
....+.+.|++.|+++. +-+...|+.+ ++.++ .+.+..+|+|+|+.-.
T Consensus 143 ~i~~v~~~~~~~G~p~l---v~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~ 198 (304)
T 1to3_A 143 MVKEFNELCHSNGLLSI---IEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEM 198 (304)
T ss_dssp HHHHHHHHHHTTTCEEE---EEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECC
T ss_pred HHHHHHHHHHHcCCcEE---EEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCC
Confidence 34445566777898875 3466677766 44678 7888889999997655
No 86
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=47.06 E-value=52 Score=24.88 Aligned_cols=68 Identities=9% Similarity=-0.061 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc----h-HHHHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV----P-EVVLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv----P-EvilAre~Gm~~ 73 (148)
.++|-.++.+-+.+.|++.|+.+. ++..+. ....|. +.+...+.|-|=.... + ....+++ |+++
T Consensus 26 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~-~iPv 97 (303)
T 3kke_A 26 NNAVFADMFSGVQMAASGHSTDVL-----LGQIDA--PPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE-GVPA 97 (303)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCCEE-----EEECCS--TTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT-TSCE
T ss_pred cChHHHHHHHHHHHHHHHCCCEEE-----EEeCCC--ChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC-CCCE
Confidence 578899999999999999998764 222222 223333 3455567776544322 2 3444666 9998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 98 V~i~ 101 (303)
T 3kke_A 98 VTIN 101 (303)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7664
No 87
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=46.87 E-value=88 Score=23.78 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCceecceEEEEeCCCCC------CCHHHH-HHHHHcCCCeeeccc--chHHH--HHHHcCCceeEEEe
Q psy17033 10 RQIIIDSLKELGFKFHDKGTAVCIEGPRF------SSRAES-NLFRSWNAHLVNMTL--VPEVV--LAKEAGLLYAAVAM 78 (148)
Q Consensus 10 r~~~~~~a~~~gi~~~~~GvY~~~~GP~f------ET~AE~-r~~r~~GaDvVGMSt--vPEvi--lAre~Gm~~~~is~ 78 (148)
.+.+.+.+++.|+++.- .+| ..|... +++.|. +.....|+|.|+.+. -+|.+ +++..++++.+.+-
T Consensus 134 ~~~v~~~~~~~g~~viv-~~~--~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~~~~ipvva~GG 210 (273)
T 2qjg_A 134 LGMIAETCEYWGMPLIA-MMY--PRGKHIQNERDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKGCPAPVVVAGG 210 (273)
T ss_dssp HHHHHHHHHHHTCCEEE-EEE--ECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHcCCCEEE-EeC--CCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHhCCCCEEEEeC
Confidence 34456667778888652 233 345432 234555 778889999999872 23432 34456788887776
Q ss_pred ee
Q psy17033 79 AT 80 (148)
Q Consensus 79 VT 80 (148)
|+
T Consensus 211 i~ 212 (273)
T 2qjg_A 211 PK 212 (273)
T ss_dssp SC
T ss_pred CC
Confidence 66
No 88
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=46.26 E-value=34 Score=25.66 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=45.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc-----hH-HHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV-----PE-VVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv-----PE-vilAre~Gm~ 72 (148)
.+||-..+.+-+.+.|++.|+.+. +.. + .....|.+ .+...|.|.|=.... ++ ...+++.|++
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~---~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iP 84 (306)
T 8abp_A 13 EEPWFQTEWKFADKAGKDLGFEVI----KIA---V-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 84 (306)
T ss_dssp TSHHHHHHHHHHHHHHHHHTEEEE----EEE---C-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHHHHHcCCEEE----EeC---C-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCc
Confidence 578889999999999999987653 221 2 23333444 444568887655433 22 4468888999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 85 vV~~~ 89 (306)
T 8abp_A 85 VIAVD 89 (306)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 98765
No 89
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.13 E-value=36 Score=25.17 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=41.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccc-hHH-H-HHHHcCCceeE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLV-PEV-V-LAKEAGLLYAA 75 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStv-PEv-i-lAre~Gm~~~~ 75 (148)
.++|-.++.+-+.+.+++.|+.+. +... .. ....| ++.+...+.|.|=.... ++. . .+++.|++++.
T Consensus 19 ~~~~~~~~~~gi~~~~~~~g~~~~----~~~~-~~--~~~~~~~~~~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~ 91 (277)
T 3e61_A 19 SNPFFTLIARGVEDVALAHGYQVL----IGNS-DN--DIKKAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVF 91 (277)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCEE----EEEC-TT--CHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEE----EEeC-CC--CHHHHHHHHHHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEE
Confidence 578889999999999999998764 2222 22 22223 34455668886554443 333 2 46777998865
Q ss_pred E
Q psy17033 76 V 76 (148)
Q Consensus 76 i 76 (148)
+
T Consensus 92 ~ 92 (277)
T 3e61_A 92 I 92 (277)
T ss_dssp G
T ss_pred E
Confidence 4
No 90
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=45.75 E-value=50 Score=24.80 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=43.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeeccc--chH--HHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL--VPE--VVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMSt--vPE--vilAre~Gm~~~ 74 (148)
.++|-..+.+-+.+.+++.|+.+. +.. .+ .....|. +.+...++|.|=... .++ +..++..|++++
T Consensus 27 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~-~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV 99 (289)
T 2fep_A 27 SSIFYSELARGIEDIATMYKYNII----LSN-SD--QNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIV 99 (289)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEE----EEE-CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHSSSCEE
T ss_pred CCchHHHHHHHHHHHHHHcCCEEE----EEe-CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHhcCCCEE
Confidence 467888899999999999998653 222 22 2223333 345567888554322 222 334567899988
Q ss_pred EEEe
Q psy17033 75 AVAM 78 (148)
Q Consensus 75 ~is~ 78 (148)
.+.-
T Consensus 100 ~~~~ 103 (289)
T 2fep_A 100 LAAS 103 (289)
T ss_dssp EESC
T ss_pred EEcc
Confidence 7743
No 91
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=45.64 E-value=1e+02 Score=24.30 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=62.8
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeC--CCCCCCHHHH-HHHHH-cCCCeeecc-cchHHHHHHHcCCceeEEE
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIE--GPRFSSRAES-NLFRS-WNAHLVNMT-LVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~--GP~fET~AE~-r~~r~-~GaDvVGMS-tvPEvilAre~Gm~~~~is 77 (148)
..|+.+-...+.+.+.+.|++.. +..+...+ =|.+....|. +.++. -+..+.++. ....+..|.++|+..+.+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~I-E~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG~~~v~i~ 103 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYI-EVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVF 103 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEE-EEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCcCEE-EECCCcCccccccccCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCCcCEEEEE
Confidence 35677778888888899999987 55553222 2455544443 22221 244454443 3445667999999998887
Q ss_pred eeeccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q psy17033 78 MATDYDCWRDTGNKVCVADVLKTFKENVEKITK 110 (148)
Q Consensus 78 ~VTN~a~~~~~~~~v~~eeVl~~~~~~~~~~~~ 110 (148)
.-++...-.. .-..+.+|.++.+++..+.+++
T Consensus 104 ~~~s~~~~~~-~~~~s~ee~l~~~~~~v~~a~~ 135 (302)
T 2ftp_A 104 AAASEAFSQR-NINCSIKDSLERFVPVLEAARQ 135 (302)
T ss_dssp EESCHHHHHH-HHSSCHHHHHHHHHHHHHHHHH
T ss_pred EecCHHHHHH-HhCCCHHHHHHHHHHHHHHHHH
Confidence 6664211000 0124678877777766665554
No 92
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=44.96 E-value=47 Score=24.58 Aligned_cols=70 Identities=7% Similarity=-0.013 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCC-HHHHHHHHHcCCCeeecccch-HHHHHHHcCCceeEEEe
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS-RAESNLFRSWNAHLVNMTLVP-EVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET-~AE~r~~r~~GaDvVGMStvP-EvilAre~Gm~~~~is~ 78 (148)
.++|-.++.+-+.+.+++.|+.+. +.... ..+. ..-++.+...+.|.|=++..+ +..+.+ .|++++.+.-
T Consensus 16 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~--~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~-~~iPvV~~~~ 87 (280)
T 3gyb_A 16 SNPWFIDLIQSLSDVLTPKGYRLS----VIDSL--TSQAGTDPITSALSMRPDGIIIAQDIPDFTVPD-SLPPFVIAGT 87 (280)
T ss_dssp TSGGGHHHHHHHHHHHGGGTCEEE----EECSS--SSCSSSCHHHHHHTTCCSEEEEESCC---------CCCEEEESC
T ss_pred CChHHHHHHHHHHHHHHHCCCEEE----EEeCC--CchHHHHHHHHHHhCCCCEEEecCCCChhhHhh-cCCCEEEECC
Confidence 578999999999999999998754 22222 2221 223456677788866543322 223334 8888877643
No 93
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Probab=44.53 E-value=17 Score=29.89 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=47.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeec
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN 81 (148)
+.+||+++++.++++|++.|++++.. + ..| -| |..--...+ ..|++.+.|++-+-
T Consensus 262 ~~~~d~~l~~~l~~~A~~~gIp~Q~~-v---~~g--------------gG------TDa~~i~~a-~~Gipt~~Igvp~r 316 (343)
T 3isx_A 262 ASISSKRILENLIEIAEKFDIKYQME-V---LTF--------------GG------TNAMGYQRT-REGIPSATVSIPTR 316 (343)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCEEC-C---CBC--------------CC------SSHHHHHHH-TSSCCEEEEEEEEB
T ss_pred CCCCCHHHHHHHHHHHHHCCCCeEEe-c---CCC--------------Cc------hHHHHHHHh-cCCCCEEEEccccc
Confidence 35789999999999999999998721 1 111 12 222222223 46999999999888
Q ss_pred cccccCCCCCCCHHHHHHHH
Q psy17033 82 YDCWRDTGNKVCVADVLKTF 101 (148)
Q Consensus 82 ~a~~~~~~~~v~~eeVl~~~ 101 (148)
+... ..+-++.+++..+.
T Consensus 317 ~~Hs--~~E~~~~~Di~~~~ 334 (343)
T 3isx_A 317 YVHS--PSEMIAPDDVEATV 334 (343)
T ss_dssp STTS--TTEEECHHHHHHHH
T ss_pred cccc--hhhEecHHHHHHHH
Confidence 7432 23556676665443
No 94
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=44.36 E-value=4.8 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=15.5
Q ss_pred CCCCCCHHHHHHHHHcCCCe
Q psy17033 35 GPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 35 GP~fET~AE~r~~r~~GaDv 54 (148)
|| ||+.|+.|.+.+|.|+
T Consensus 43 ~p--eT~~E~sF~~~fG~~L 60 (94)
T 3fap_B 43 GP--QTLKETSFNQAYGRDL 60 (94)
T ss_dssp CC--CSHHHHHHHHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHHH
Confidence 67 8999999999999543
No 95
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=44.09 E-value=51 Score=25.74 Aligned_cols=68 Identities=21% Similarity=0.118 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccch-HHH----HHHHcCCce
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVP-EVV----LAKEAGLLY 73 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvP-Evi----lAre~Gm~~ 73 (148)
..|...+.+.+++.+++.|+.+... .+.-...+.|. +.+.-++..++|+|-+...+ ++. .++++|+..
T Consensus 152 ~~~g~~~~~~~~~~~~~~G~~v~~~-~~~~~~~~d~~--~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~ 224 (379)
T 3n0w_A 152 AAYGDLMNAAIRRELTAGGGQIVGS-VRFPFETQDFS--SYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPS 224 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEE-EEECTTCCCCH--HHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSC
T ss_pred cchhHHHHHHHHHHHHHcCCEEEEE-EeCCCCCCCHH--HHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCC
Confidence 4566778888899999999987622 23333334554 46777888999999887764 332 368889875
No 96
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=43.78 E-value=53 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHH
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV 63 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEv 63 (148)
.+.+.+++.|+.+ |+++ ..++++.+.+..+|+|.| +|--|+.
T Consensus 177 ~~v~~~~~~G~~v-----~~wt----vn~~~~~~~l~~~GvdgI-~TD~p~~ 218 (224)
T 1vd6_A 177 EAVAGWRKRGLFV-----VAWT----VNEEGEARRLLALGLDGL-IGDRPEV 218 (224)
T ss_dssp HHHHHHHHTTCEE-----EEEC----CCCHHHHHHHHHTTCSEE-EESCHHH
T ss_pred HHHHHHHHCCCEE-----EEEe----CCCHHHHHHHHhcCCCEE-EcCCHHH
Confidence 3445556666653 4444 257888888888888887 5777764
No 97
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=43.62 E-value=35 Score=25.38 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHH---HcCCCeeeccc-c-----hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR---SWNAHLVNMTL-V-----PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r---~~GaDvVGMSt-v-----PEvilAre~Gm~ 72 (148)
.+||-.++.+-+.+.+++.|+.+. ++. .......|.+.++ ..+.|.+=... - +....+++.|++
T Consensus 12 ~~~f~~~~~~gi~~~~~~~g~~~~-----~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 84 (271)
T 2dri_A 12 NNPFFVSLKDGAQKEADKLGYNLV-----VLD--SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIP 84 (271)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEE-----EEE--CTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHcCcEEE-----EeC--CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCc
Confidence 578888999999999999987654 122 2233344544444 45666543322 2 223456778999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 85 vV~i~ 89 (271)
T 2dri_A 85 VITLD 89 (271)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88764
No 98
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=43.49 E-value=1.1e+02 Score=23.39 Aligned_cols=72 Identities=10% Similarity=-0.017 Sum_probs=44.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc-----hHHHHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV-----PEVVLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv-----PEvilAre~Gm~~ 73 (148)
.++|-.++.+-+.+.+++.|+.+. ++.+...+......|.. .+...+.|.|=...- +.+..+++.|+++
T Consensus 55 ~~~~~~~~~~gi~~~a~~~g~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~ 131 (342)
T 1jx6_A 55 VSDYWVRNIASFEKRLYKLNINYQ---LNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTK 131 (342)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCEE---EEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCE
T ss_pred ccHHHHHHHHHHHHHHHHcCCeEE---EEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHcCCCE
Confidence 467888899999999999998654 23333333344444444 444568886544322 2233466779988
Q ss_pred eEE
Q psy17033 74 AAV 76 (148)
Q Consensus 74 ~~i 76 (148)
+.+
T Consensus 132 V~~ 134 (342)
T 1jx6_A 132 LIL 134 (342)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 99
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=43.36 E-value=60 Score=24.07 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=42.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeec-ccch-----HHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNM-TLVP-----EVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGM-StvP-----EvilAre~Gm~ 72 (148)
.++|-.++.+-+.+.+++.|+.+. +... ......| ++.+...+.|.|=. ..-+ ....+++.|++
T Consensus 13 ~~~~~~~~~~gi~~~~~~~g~~~~----~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iP 85 (290)
T 2fn9_A 13 NNPWFVVLAETAKQRAEQLGYEAT----IFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIP 85 (290)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEE----EEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----EeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCe
Confidence 467888899999999999998654 2222 2222233 34445568885443 3222 23346778999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 86 vV~~~ 90 (290)
T 2fn9_A 86 VFCVD 90 (290)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88764
No 100
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=43.32 E-value=58 Score=24.43 Aligned_cols=70 Identities=7% Similarity=0.050 Sum_probs=40.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc---chH-HHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL---VPE-VVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt---vPE-vilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.|++.|+.+. ++ ...+. -+-..-++.+...+.|.|=... -.+ ...+.+ |++++.+.
T Consensus 22 ~~~~~~~~~~gi~~~a~~~g~~~~---~~-~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i~ 95 (289)
T 3k9c_A 22 QQPFHGDLVEQIYAAATRRGYDVM---LS-AVAPS-RAEKVAVQALMRERCEAAILLGTRFDTDELGALAD-RVPALVVA 95 (289)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEE---EE-EEBTT-BCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHT-TSCEEEES
T ss_pred CCchHHHHHHHHHHHHHHCCCEEE---EE-eCCCC-HHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHc-CCCEEEEc
Confidence 578888999999999999998765 22 22222 2222233444455666544332 122 223444 99987664
No 101
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=42.59 E-value=18 Score=28.30 Aligned_cols=18 Identities=0% Similarity=-0.068 Sum_probs=13.1
Q ss_pred CHHHHHHHHHcCCCeeec
Q psy17033 40 SRAESNLFRSWNAHLVNM 57 (148)
Q Consensus 40 T~AE~r~~r~~GaDvVGM 57 (148)
||.|+..-..+|+|.|..
T Consensus 136 TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 136 NPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 777777777777777765
No 102
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Probab=42.05 E-value=1e+02 Score=24.14 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=50.1
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccc
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 83 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a 83 (148)
++++++.+.++++|++.|+++. +....|| -|-|.-- +.....|++.+.|++-..+.
T Consensus 253 ~~~~~l~~~~~~~a~~~gi~~~----~~~~~g~-------------ggsDa~~-------~~~~~~gipt~~lg~~~~~~ 308 (346)
T 1vho_A 253 VVDRNLVQKIIEIAKKHNVSLQ----EEAVGGR-------------SGTETDF-------VQLVRNGVRTSLISIPLKYM 308 (346)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCE----EESSCCC-----------------CTT-------HHHHHTTCEEEEEEEECBST
T ss_pred cCCHHHHHHHHHHHHHCCCCEE----EEeCCCC-------------CCchHHH-------HHHhCCCCcEEEEehhhccc
Confidence 5899999999999999999865 1112122 2333211 11134699999988887653
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17033 84 CWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120 (148)
Q Consensus 84 ~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~ 120 (148)
. ...|-++.+++.... +++..++..+.
T Consensus 309 H--s~~E~~~~~dl~~~~--------~ll~~~~~~~~ 335 (346)
T 1vho_A 309 H--TPVEMVDPRDVEELA--------RLLSLVAVELE 335 (346)
T ss_dssp T--STTEEECHHHHHHHH--------HHHHHHHHHCC
T ss_pred c--cHHHhcCHHHHHHHH--------HHHHHHHHHhh
Confidence 3 234667877765433 45555555553
No 103
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=42.03 E-value=37 Score=27.79 Aligned_cols=38 Identities=13% Similarity=-0.045 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCee
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLV 55 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvV 55 (148)
+...+...++++|+.+ ..+| =||.++..+++.+|+|.+
T Consensus 379 ~~~~~i~~~~~~~~~v-------iaeg--VEt~~~~~~l~~~G~~~~ 416 (437)
T 3hvb_A 379 ILKGLIAELHEQQKLS-------IVPF--VESASVLATLWQAGATYI 416 (437)
T ss_dssp HHHHHHHHHHHTTCEE-------EECC--CCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCCCE-------Eeee--eCCHHHHHHHHHcCCCEe
Confidence 3444555666665543 4455 699999999999999975
No 104
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=41.76 E-value=58 Score=24.27 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=42.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeec-ccchHH-----HHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNM-TLVPEV-----VLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGM-StvPEv-----ilAre~Gm~ 72 (148)
.++|-..+.+-+.+.+++.|+.+. +.+.. ......|.+ .+...|.|.|=. +.-++. ..+++.|++
T Consensus 15 ~~~~~~~~~~g~~~~~~~~g~~~~----~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ip 88 (303)
T 3d02_A 15 GMPWFNRMGEGVVQAGKEFNLNAS----QVGPS--STDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIV 88 (303)
T ss_dssp SCHHHHHHHHHHHHHHHHTTEEEE----EECCS--SSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHHHHHcCCEEE----EECCC--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCe
Confidence 467888899999999999886542 22211 223333333 444568886543 333322 345678999
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+.-
T Consensus 89 vV~~~~ 94 (303)
T 3d02_A 89 VLTNES 94 (303)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 887643
No 105
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.62 E-value=61 Score=24.43 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=42.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-..+.+-+.+.+++.|+.+. +.. . ......|. +.+...++|.|=.... +....+++.|++
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~l~----~~~-~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 85 (306)
T 2vk2_A 13 ESGWRAAETNVAKSEAEKRGITLK----IAD-G--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIP 85 (306)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCEEE----EEE-C--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEE----EeC-C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCC
Confidence 357778888889999999998754 222 2 22333343 3445568886543322 223346778999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 86 vV~~~ 90 (306)
T 2vk2_A 86 VFLLD 90 (306)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88764
No 106
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=41.27 E-value=8.2 Score=29.14 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=44.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCc-eecceEEEEeCCCCCCCHHH-HHHHHHcCCCeeecccchHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFK-FHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~-~~~~GvY~~~~GP~fET~AE-~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+. +. ++..+...+...+ ++.+...+.|.|=... +....+++.|++++.+.
T Consensus 21 ~~~~~~~~~~gi~~~a~~~g~~~~~-----~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~~~~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 21 NNRFYAQIIDGIQEVIQKEGYTALI-----SFSTNSDVKKYQNAIINFENNNVDGIITSA-FTIPPNFHLNTPLVMYD 92 (277)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEEE-----EECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CCCCTTCCCSSCEEEES
T ss_pred CChhHHHHHHHHHHHHHHCCCCEEE-----EEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hHHHHHHhCCCCEEEEc
Confidence 5788889999999999999886 43 2222222222111 4456667888766554 44445667788887664
No 107
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=40.78 E-value=60 Score=23.98 Aligned_cols=69 Identities=7% Similarity=-0.006 Sum_probs=40.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeec-cc-ch--HHHHHHH-cCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNM-TL-VP--EVVLAKE-AGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGM-St-vP--EvilAre-~Gm~~ 73 (148)
.++|-..+.+-+.+.+++.|+.+. + +.. .+....|. +.+...+.|.|=. +. .+ .+..+++ .|+++
T Consensus 32 ~~~~~~~~~~gi~~~~~~~g~~~~----~-~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPv 104 (296)
T 3brq_A 32 HGIYFSELLFHAARMAEEKGRQLL----L-ADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPI 104 (296)
T ss_dssp C--CHHHHHHHHHHHHHHTTCEEE----E-ECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCE
T ss_pred CCchHHHHHHHHHHHHHHCCCEEE----E-EeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCE
Confidence 467888899999999999888653 2 222 22222333 3444568885533 22 22 2334566 79998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 105 V~~~ 108 (296)
T 3brq_A 105 MVLN 108 (296)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7764
No 108
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=40.44 E-value=94 Score=24.22 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCC-CCCCCHH-HHHHHHHcCCCeeecccch---HHH----------HHHHcC
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEG-PRFSSRA-ESNLFRSWNAHLVNMTLVP---EVV----------LAKEAG 70 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~G-P~fET~A-E~r~~r~~GaDvVGMStvP---Evi----------lAre~G 70 (148)
+.+.++.+.+.+++.|.++. ..|=-++| |..+... -.+-++.+|||++=+-++| +=. -..+.+
T Consensus 124 ~~~~~~~l~~~a~~~~~kiI--~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKia~~~~~~~D~l~Ll~~~~~~~~~~~~ 201 (258)
T 4h3d_A 124 GDEVIDEVVNFAHKKEVKVI--ISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201 (258)
T ss_dssp CHHHHHHHHHHHHHTTCEEE--EEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHhCCCEEE--EEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHHHHHHHHHHHHhcCC
Confidence 45566777777777776653 33433444 4433221 2345567999998665555 211 112347
Q ss_pred CceeEEEee
Q psy17033 71 LLYAAVAMA 79 (148)
Q Consensus 71 m~~~~is~V 79 (148)
.+++++++-
T Consensus 202 ~P~I~~~MG 210 (258)
T 4h3d_A 202 RPIITMSMS 210 (258)
T ss_dssp SCBEEEECT
T ss_pred CCEEEEeCC
Confidence 888888763
No 109
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.66 E-value=73 Score=23.74 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecc----cchHHHHHHHcCCceeEEE
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMT----LVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMS----tvPEvilAre~Gm~~~~is 77 (148)
+|-.++.+-+.+.+++.|+.+. +....+..-+-..-.+++...+.|.|=.. .-+.+..+++.|++++.+.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~----~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLV----VTPHIHAKDSMVPIRYILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHG 96 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEE----ECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHHcCCEEE----EecCCcchhHHHHHHHHHHcCCccEEEEecCCCCcHHHHHHhhCCCCEEEEC
Confidence 8888999999999999887654 22222211112233445667788765432 2234456778899988654
No 110
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=38.97 E-value=59 Score=25.25 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=47.0
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccch-HHH----HHHHcCCcee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVP-EVV----LAKEAGLLYA 74 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvP-Evi----lAre~Gm~~~ 74 (148)
..|...+.+.+++.+++.|+.+. .-.+.-.....|. +.++.++..++|+|=+...+ ++. .++++|+..-
T Consensus 150 ~~~g~~~~~~~~~~~~~~G~~v~-~~~~~~~~~~d~~--~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~ 223 (375)
T 3i09_A 150 YAFGKALEKNTADVVKANGGKVL-GEVRHPLSASDFS--SFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKT 223 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCSCCH--HHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGT
T ss_pred cHHHHHHHHHHHHHHHHcCCEEe-eeeeCCCCCccHH--HHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcC
Confidence 35667788888999999999875 2233333344454 56777888999999765555 433 3688898764
No 111
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=38.72 E-value=33 Score=21.60 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=24.7
Q ss_pred ceEEEEeCCCCCCCHHHHH-HHHHcCCCeee
Q psy17033 27 KGTAVCIEGPRFSSRAESN-LFRSWNAHLVN 56 (148)
Q Consensus 27 ~GvY~~~~GP~fET~AE~r-~~r~~GaDvVG 56 (148)
+|..+++.|-.+.++.+.+ +++.+||.++.
T Consensus 9 ~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~ 39 (92)
T 4id3_A 9 KNCVIYINGYTKPGRLQLHEMIVLHGGKFLH 39 (92)
T ss_dssp TTCEEEECSCCSSCHHHHHHHHHHTTCEEES
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHCCCEEEE
Confidence 7899999997778888776 77789988775
No 112
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=38.49 E-value=50 Score=24.78 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=43.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHH---HHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLF---RSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~---r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.+||-.++.+-+.+.+++.|+.+. + +..........|.+.+ ...+.|.|=.... +....+++.|++
T Consensus 12 ~~~f~~~~~~gi~~~a~~~g~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 86 (288)
T 1gud_A 12 SNPFWVDMKKGIEDEAKTLGVSVD----I-FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIY 86 (288)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCEE----E-EECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHHHHHcCCEEE----E-eCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCe
Confidence 578888999999999999997653 2 2211233444454444 4456665543221 334456778999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 87 vV~~~ 91 (288)
T 1gud_A 87 LVNLD 91 (288)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88764
No 113
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=38.24 E-value=38 Score=25.29 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=42.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc------hHHHHHHHcCCc
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV------PEVVLAKEAGLL 72 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv------PEvilAre~Gm~ 72 (148)
.++|-..+.+-+.+.|+++|+.+. +....+ .-....|. +.+...+.|.|=.... +..-.++ .|++
T Consensus 16 ~~~~~~~~~~g~~~~a~~~g~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~iP 89 (304)
T 3o1i_D 16 KDSYWLSVNYGMVSEAEKQGVNLR----VLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV-GNTP 89 (304)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCEEE----EEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT-TTSC
T ss_pred CCcHHHHHHHHHHHHHHHcCCeEE----EEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc-CCCC
Confidence 567888999999999999998654 222222 01222333 3445568887654332 2233455 7999
Q ss_pred eeEE
Q psy17033 73 YAAV 76 (148)
Q Consensus 73 ~~~i 76 (148)
++.+
T Consensus 90 vV~~ 93 (304)
T 3o1i_D 90 VFAT 93 (304)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8877
No 114
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=38.19 E-value=45 Score=24.54 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=41.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeeccc--c--hHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTL--V--PEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMSt--v--PEvilAre~Gm~~~ 74 (148)
.++|-.++.+-+.+.+++.|+.+. +... + .....| ++.+...+.|.|=... . +....+++.|++++
T Consensus 14 ~~~~~~~~~~gi~~~~~~~g~~~~----~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~iPvV 86 (275)
T 3d8u_A 14 FEKACAHFLPSFQQALNKAGYQLL----LGYS-D--YSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVL 86 (275)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCEEC----CEEC-T--TCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHHTCCEE
T ss_pred ccccHHHHHHHHHHHHHHCCCEEE----EEcC-C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEE
Confidence 467888899999999999998754 1221 1 222233 3445556777543322 2 22334667899988
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 87 ~~~ 89 (275)
T 3d8u_A 87 EIA 89 (275)
T ss_dssp EES
T ss_pred EEe
Confidence 764
No 115
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=37.96 E-value=65 Score=25.11 Aligned_cols=69 Identities=9% Similarity=0.000 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeee-cccc---hHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVN-MTLV---PEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVG-MStv---PEvilAre~Gm~~~ 74 (148)
.+||-.++.+-+.+.+++.|+.+. +. ..+ .....|. +.+...+.|.|= .+.- +....+++.|++++
T Consensus 77 ~~~~~~~~~~gi~~~a~~~g~~~~----~~-~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV 149 (348)
T 3bil_A 77 INHYFAAMVTEIQSTASKAGLATI----IT-NSN--EDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQKQGMPVV 149 (348)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEE----EE-ECT--TCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHHC-CCEE
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEE----EE-eCC--CCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEE
Confidence 467888999999999999998754 22 222 2222333 345556777443 3222 22334567899988
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 150 ~i~ 152 (348)
T 3bil_A 150 LVD 152 (348)
T ss_dssp EES
T ss_pred EEc
Confidence 764
No 116
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=37.60 E-value=22 Score=26.56 Aligned_cols=72 Identities=7% Similarity=0.048 Sum_probs=44.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccch----HHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVP----EVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvP----EvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+.+. ++..-..+.-+ ..-++.+...+.|.|=..... +...+.+.|++++.+.
T Consensus 23 ~~~~~~~~~~gi~~~a~~~g~~~~---~~~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~ 98 (289)
T 3g85_A 23 SVNIISRFLRGLQSKLAKQNYNYN---VVICPYKTDCL-HLEKGISKENSFDAAIIANISNYDLEYLNKASLTLPIILFN 98 (289)
T ss_dssp CGGGHHHHHHHHHHHHHHTTTCSE---EEEEEECTTCG-GGCGGGSTTTCCSEEEESSCCHHHHHHHHHCCCSSCEEEES
T ss_pred chHHHHHHHHHHHHHHHHcCCeEE---EEecCCCchhH-HHHHHHHhccCCCEEEEecCCcccHHHHHhccCCCCEEEEC
Confidence 578889999999999999998765 23222222221 122345556677776655432 2333445688887664
No 117
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=37.54 E-value=1.3e+02 Score=22.70 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHH
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVL 65 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvil 65 (148)
.+.+.+++.|+. ||+++-++.=.++++.+.+..+|+|.|- |-.|+...
T Consensus 203 ~~v~~~~~~G~~-----v~~wTv~~~~n~~~~~~~l~~~GvdgI~-TD~p~~~~ 250 (258)
T 2o55_A 203 EQVCTAHEKGLS-----VTVWMPWIFDDSEEDWKKCLELQVDLIC-SNYPFGLM 250 (258)
T ss_dssp HHHHHHHHTTCE-----EEEECCTTCCCCHHHHHHHHHHTCSEEE-ESCHHHHH
T ss_pred HHHHHHHHCCCE-----EEEeeCCCCCCCHHHHHHHHHcCCCEEE-eCCHHHHH
Confidence 344555666665 4555554422788999999999988774 66776543
No 118
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=37.41 E-value=44 Score=24.81 Aligned_cols=70 Identities=6% Similarity=0.010 Sum_probs=42.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeeccc----chHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL----VPEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMSt----vPEvilAre~Gm~~~ 74 (148)
.++|-..+.+-+.+.+++.|+.+. ++..+ .....|. +.+...+.|.|=... -+....+++.|++++
T Consensus 24 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV 96 (292)
T 3k4h_A 24 QNPFFPEVIRGISSFAHVEGYALY-----MSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFV 96 (292)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCEEE-----ECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEE-----EEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHCCCCEE
Confidence 568888999999999999987653 11111 2222233 344556777654321 233445678899988
Q ss_pred EEEe
Q psy17033 75 AVAM 78 (148)
Q Consensus 75 ~is~ 78 (148)
.+.-
T Consensus 97 ~~~~ 100 (292)
T 3k4h_A 97 LIGK 100 (292)
T ss_dssp EESC
T ss_pred EECC
Confidence 7643
No 119
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=37.28 E-value=63 Score=24.11 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHHhCC-ceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeeccc-ch----H-HHHHHHcCC
Q psy17033 2 EPAFDNSTRQIIIDSLKELGF-KFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTL-VP----E-VVLAKEAGL 71 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi-~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMSt-vP----E-vilAre~Gm 71 (148)
.++|-..+.+-+.+.++++|+ .+. + +. .......|. +.+...+.|.|=... -+ + +..+++.|+
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~~----~-~~--~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~i 85 (309)
T 2fvy_A 13 DDNFMSVVRKAIEQDAKAAPDVQLL----M-ND--SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 85 (309)
T ss_dssp TSHHHHHHHHHHHHHHHTCTTEEEE----E-EE--CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTC
T ss_pred CcHHHHHHHHHHHHHHHhcCCeEEE----E-ec--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCC
Confidence 467888999999999998886 543 2 22 223333343 344556888654432 22 2 344667899
Q ss_pred ceeEEEe
Q psy17033 72 LYAAVAM 78 (148)
Q Consensus 72 ~~~~is~ 78 (148)
+++.+.-
T Consensus 86 PvV~~~~ 92 (309)
T 2fvy_A 86 PVVFFNK 92 (309)
T ss_dssp CEEEESS
T ss_pred cEEEecC
Confidence 9887643
No 120
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.60 E-value=63 Score=25.94 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=41.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHH--HHHHHcCCceeEEEe
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV--VLAKEAGLLYAAVAM 78 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEv--ilAre~Gm~~~~is~ 78 (148)
.+||-.++.+-+.+.|++.|+.+. ++. . ... ...++.+...++|.|=++...+. ..+++.|++++.+.-
T Consensus 35 ~~~f~~~l~~gi~~~a~~~g~~~~---i~~--~-~~~--~~~i~~l~~~~vDGiIi~~~~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 35 NKAYDRQVVEGVGEYLQASQSEWD---IFI--E-EDF--RARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCEE---EEE--C-C-C--C--------CCCSEEEEETTCHHHHHHHTTCCSCEEEEEE
T ss_pred cchhhHHHHHHHHHHHHhcCCCeE---EEe--c-CCc--cchhhhHhcCCCCEEEEecCChHHHHHHhhCCCCEEEecC
Confidence 578888999999999999998754 222 1 121 22367788888887765443332 345677999987764
No 121
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=36.35 E-value=1.4e+02 Score=22.51 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=30.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccc------------hH----H-HHHHHcCCceeEEEee
Q psy17033 27 KGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV------------PE----V-VLAKEAGLLYAAVAMA 79 (148)
Q Consensus 27 ~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStv------------PE----v-ilAre~Gm~~~~is~V 79 (148)
=|+|.+.-.+.+....-++..+.+|.|.|-...- ++ . -++++.||.+.+++..
T Consensus 19 ~gi~~~~~~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~ 88 (295)
T 3cqj_A 19 LGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLS 88 (295)
T ss_dssp EEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEG
T ss_pred ceeeeecCCCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3555555444455555566777777777665432 11 1 1466778888877653
No 122
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=36.31 E-value=67 Score=24.58 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcC--CCeee-cccchH-----HHHHHHcC
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWN--AHLVN-MTLVPE-----VVLAKEAG 70 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~G--aDvVG-MStvPE-----vilAre~G 70 (148)
.++|-.++.+-+.+.+++.|+.+. +.. . ......|. +.+...+ .|.|= +..-++ ...+++.|
T Consensus 16 ~~~~~~~~~~gi~~~a~~~g~~l~----~~~-~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~ 88 (332)
T 2rjo_A 16 TNPYYTAFNKGAQSFAKSVGLPYV----PLT-T--EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAG 88 (332)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCCEE----EEE-C--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEE----Eec-C--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCC
Confidence 467888999999999999998754 222 2 22223333 3444567 77543 333332 23356789
Q ss_pred CceeEEEe
Q psy17033 71 LLYAAVAM 78 (148)
Q Consensus 71 m~~~~is~ 78 (148)
++++.+.-
T Consensus 89 iPvV~~~~ 96 (332)
T 2rjo_A 89 AYVTTIWN 96 (332)
T ss_dssp CEEEEESC
T ss_pred CeEEEECC
Confidence 99887743
No 123
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=36.06 E-value=1.4e+02 Score=22.65 Aligned_cols=18 Identities=6% Similarity=0.001 Sum_probs=9.2
Q ss_pred CHHHHHHHHHcCCCeeec
Q psy17033 40 SRAESNLFRSWNAHLVNM 57 (148)
Q Consensus 40 T~AE~r~~r~~GaDvVGM 57 (148)
|+.|+.....+|+|.|+.
T Consensus 119 t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 119 NPMAIEIALEMGISAVKF 136 (224)
T ss_dssp SHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 455555555555555543
No 124
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.81 E-value=46 Score=24.81 Aligned_cols=70 Identities=10% Similarity=-0.012 Sum_probs=42.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc----hHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV----PEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv----PEvilAre~Gm~~~ 74 (148)
.++|-.++.+-+.+.+++.|+.+. +....+ ....|. +.+...+.|.|=.... +....+++.|++++
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV 91 (291)
T 3egc_A 19 ENVFFAEVASGVESEARHKGYSVL----LANTAE---DIVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIV 91 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEE----EEECTT---CHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEE
T ss_pred cchHHHHHHHHHHHHHHHCCCEEE----EEeCCC---CHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhccCCCEE
Confidence 467888999999999999998754 222221 222233 3445567776543322 33334567799988
Q ss_pred EEEe
Q psy17033 75 AVAM 78 (148)
Q Consensus 75 ~is~ 78 (148)
.+.-
T Consensus 92 ~~~~ 95 (291)
T 3egc_A 92 AVNR 95 (291)
T ss_dssp EESS
T ss_pred EEec
Confidence 6643
No 125
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=35.73 E-value=52 Score=25.47 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=43.7
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHH---H--cCCCeeecccc----hH-HHHHHHcCCc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFR---S--WNAHLVNMTLV----PE-VVLAKEAGLL 72 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r---~--~GaDvVGMStv----PE-vilAre~Gm~ 72 (148)
++|-..+.+-+.+.|+++|+.+. +.... .....+.+.++ . .+.|.|=.... ++ +-.+++.|++
T Consensus 16 ~~f~~~~~~g~~~~a~~~g~~~~----~~~~~---~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giP 88 (350)
T 3h75_A 16 ETFWVSYSQFMQAAARDLGLDLR----ILYAE---RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIK 88 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEE----EEECT---TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCE
T ss_pred ChHHHHHHHHHHHHHHHcCCeEE----EEECC---CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCc
Confidence 38889999999999999998764 22222 22223333333 3 58887665431 22 2346678999
Q ss_pred eeEEEee
Q psy17033 73 YAAVAMA 79 (148)
Q Consensus 73 ~~~is~V 79 (148)
++.+.--
T Consensus 89 vV~~~~~ 95 (350)
T 3h75_A 89 LFIVNSP 95 (350)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9877543
No 126
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=35.48 E-value=89 Score=24.43 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc--chHH----HHHHHcCCc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL--VPEV----VLAKEAGLL 72 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt--vPEv----ilAre~Gm~ 72 (148)
+.|-..+.+.+++.+++.|.++. .-.+.-..-+.| .+.+.-++..|+|+|-+.. -|.. ..+++.|+.
T Consensus 149 ~~~g~~~~~~~~~~~~~~g~~vv-~~~~~~~~~~d~--~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~ 221 (371)
T 4f06_A 149 YGPGIDAETAFKKTFEAEGGKVV-EAVRMPLSTTDF--GPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLK 221 (371)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEE-EEEEECTTCCCC--HHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTT
T ss_pred cccchhHHHHHHHHHHhcCCceE-EEEecCcccccH--HHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhh
Confidence 45677888889999999999876 223333333445 4578889999999985433 2443 346778876
No 127
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4
Probab=34.72 E-value=1.3e+02 Score=24.19 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=41.5
Q ss_pred ccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeeccc
Q psy17033 4 AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYD 83 (148)
Q Consensus 4 ~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~a 83 (148)
++++.|.+.+.+++++.|+++.. . .... -|.|.--+ .....|++.+.++.-..+.
T Consensus 272 ~~~~~l~~~l~~~a~~~gi~~~~-~--~~~~---------------ggtDa~~~-------~~~~~GiPtv~lg~~~~~~ 326 (373)
T 1vhe_A 272 VSHKGLRDAVVATAEEAGIPYQF-D--AIAG---------------GGTDSGAI-------HLTANGVPALSITIATRYI 326 (373)
T ss_dssp ECCHHHHHHHHHHHHHHTCCCEE-E--EETT---------------CCCTHHHH-------TTSTTCCCEEEEEEEEBST
T ss_pred CCCHHHHHHHHHHHHHcCCCeEE-e--cCCC---------------CCccHHHH-------HHhCCCCcEEEEccccccC
Confidence 46889999999999999887641 1 1111 12221110 0123578887777665553
Q ss_pred cccCCCCCCCHHHHHHHHH
Q psy17033 84 CWRDTGNKVCVADVLKTFK 102 (148)
Q Consensus 84 ~~~~~~~~v~~eeVl~~~~ 102 (148)
....+-++.+++....+
T Consensus 327 --Hs~~E~v~~~dl~~~~~ 343 (373)
T 1vhe_A 327 --HTHAAMLHRDDYENAVK 343 (373)
T ss_dssp --TSSCEEEEHHHHHHHHH
T ss_pred --CChhheecHHHHHHHHH
Confidence 22246677777665443
No 128
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=34.35 E-value=46 Score=27.13 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCceecceEEEEe----CCCCCCCHHHHHHHHHcCCCe
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCI----EGPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~----~GP~fET~AE~r~~r~~GaDv 54 (148)
....++..|++.|+++...|+|-.- .|-..+...|-..|+.+|-+-
T Consensus 278 fnr~lR~~A~~kG~kl~e~Gl~~~~~~~~~g~~~~~~~E~~If~~LGl~y 327 (335)
T 2fmp_A 278 FNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKY 327 (335)
T ss_dssp HHHHHHHHHHHTTEEECSSCEEECCTTCCCCCCCCCCSHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCcccccccccccccccCCCccCCCCHHHHHHHcCCCC
Confidence 3344555666789999888988532 565677777888888888553
No 129
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=33.55 E-value=1.4e+02 Score=21.94 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=51.5
Q ss_pred cCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCC-CHHHHHHHHHcCCCeeecccchHH-----HHHHHcCCceeEEEe
Q psy17033 5 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFS-SRAESNLFRSWNAHLVNMTLVPEV-----VLAKEAGLLYAAVAM 78 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fE-T~AE~r~~r~~GaDvVGMStvPEv-----ilAre~Gm~~~~is~ 78 (148)
++++-.+.+++.+++.|+++..-+.| .....+ -..-++..+.+|++.|....-+|. -.|++.|++++
T Consensus 60 ~~~~~~~~~~~~l~~~gl~i~~~~~~---~~~~~~~~~~~i~~A~~lGa~~v~~~~~~~~~~~l~~~a~~~gv~l~---- 132 (262)
T 3p6l_A 60 LDAQTQKEIKELAASKGIKIVGTGVY---VAEKSSDWEKMFKFAKAMDLEFITCEPALSDWDLVEKLSKQYNIKIS---- 132 (262)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEE---CCSSTTHHHHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEE----
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecc---CCccHHHHHHHHHHHHHcCCCEEEecCCHHHHHHHHHHHHHhCCEEE----
Confidence 45777888899999999987522222 112111 234566778899998887654442 34667788643
Q ss_pred eeccccccCCCCCCCHHHHHHHHH
Q psy17033 79 ATDYDCWRDTGNKVCVADVLKTFK 102 (148)
Q Consensus 79 VTN~a~~~~~~~~v~~eeVl~~~~ 102 (148)
+=|.. +.. ...+.+++++.++
T Consensus 133 ~En~~-~~~--~~~~~~~~~~ll~ 153 (262)
T 3p6l_A 133 VHNHP-QPS--DYWKPENLLKAIS 153 (262)
T ss_dssp EECCS-SSS--SSSSHHHHHHHHT
T ss_pred EEeCC-Ccc--ccCCHHHHHHHHH
Confidence 34432 111 1125566666554
No 130
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=33.45 E-value=91 Score=24.74 Aligned_cols=19 Identities=16% Similarity=-0.097 Sum_probs=9.8
Q ss_pred ccchHHHHHHHcCCceeEE
Q psy17033 58 TLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 58 StvPEvilAre~Gm~~~~i 76 (148)
.+.-|..-|.++|..+.|+
T Consensus 177 h~~eEl~~A~~~ga~iIGi 195 (272)
T 3tsm_A 177 HDEAEMERALKLSSRLLGV 195 (272)
T ss_dssp CSHHHHHHHTTSCCSEEEE
T ss_pred CCHHHHHHHHhcCCCEEEE
Confidence 4445555555555555543
No 131
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=33.40 E-value=34 Score=30.26 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=32.7
Q ss_pred CcccCHHHHHHHHHH---HHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc
Q psy17033 2 EPAFDNSTRQIIIDS---LKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~---a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt 59 (148)
.+||+|.+.+.+..+ |++.|++ +.+-|=-=..|+..+++..+|.|-+.|+.
T Consensus 474 ~dp~~paVl~li~~vv~aa~~~g~~-------vgvCGe~agdp~~~~~l~~lG~~~~S~~p 527 (575)
T 2hwg_A 474 YQPMSPSVLNLIKQVIDASHAEGKW-------TGMCGELAGDERATLLLLGMGLDEFSMSA 527 (575)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHTTCE-------EEECSTTTTCTTTHHHHHHTTCCEEEECG
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCe-------EEEeCCCCCCHHHHHHHHHCCCCEEEECc
Confidence 367888766655544 5555554 34434222366888899999999877764
No 132
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=33.14 E-value=99 Score=23.65 Aligned_cols=69 Identities=9% Similarity=-0.029 Sum_probs=41.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeec-cc-c-hH-HHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNM-TL-V-PE-VVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGM-St-v-PE-vilAre~Gm~~~ 74 (148)
.++|-.++.+-+.+.+++.|+.+. + +..+ .....| ++.+...+.|.|=. +. . ++ ...+++.|++++
T Consensus 74 ~~~~~~~~~~gi~~~~~~~g~~~~----~-~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV 146 (332)
T 2o20_A 74 TSTYFAAITRGVDDIASMYKYNMI----L-ANSD--NDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVV 146 (332)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEE----E-EECT--TCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHHHCCCEE
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEE----E-EECC--CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEE
Confidence 467888899999999999988754 2 2222 222233 34455568885433 22 2 23 233457799988
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 147 ~~~ 149 (332)
T 2o20_A 147 LVG 149 (332)
T ss_dssp EES
T ss_pred EEc
Confidence 764
No 133
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=33.09 E-value=1e+02 Score=22.61 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHc
Q psy17033 8 STRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEA 69 (148)
Q Consensus 8 ~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~ 69 (148)
+..-.+...|++++...+ +++-+..|.+ ...++.+|+|.| ..|+...|+.+
T Consensus 83 ~~n~~~~~~a~~~~~~~~---iia~~~~~~~-----~~~l~~~G~~~v---i~p~~~~a~~l 133 (234)
T 2aef_A 83 SETIHCILGIRKIDESVR---IIAEAERYEN-----IEQLRMAGADQV---ISPFVISGRLM 133 (234)
T ss_dssp HHHHHHHHHHHHHCSSSE---EEEECSSGGG-----HHHHHHHTCSEE---ECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCe---EEEEECCHhH-----HHHHHHCCCCEE---ECHHHHHHHHH
Confidence 444555667777766543 7777777765 367778999965 45666666554
No 134
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=32.48 E-value=80 Score=24.89 Aligned_cols=32 Identities=22% Similarity=0.059 Sum_probs=18.5
Q ss_pred HHHHcCCCe-eecccchHHHHHHHcCCceeEEE
Q psy17033 46 LFRSWNAHL-VNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 46 ~~r~~GaDv-VGMStvPEvilAre~Gm~~~~is 77 (148)
..+.+|-++ |..++..|+..|.++|..|+|+.
T Consensus 157 ~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~ 189 (272)
T 3qja_A 157 RTESLGMTALVEVHTEQEADRALKAGAKVIGVN 189 (272)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEE
T ss_pred HHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 444556553 34456666666666666666553
No 135
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=31.71 E-value=1.6e+02 Score=22.04 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=40.6
Q ss_pred cCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHH---HHHcCCCeeec-ccc-----hHHHHHHHcCCceeE
Q psy17033 5 FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNM-TLV-----PEVVLAKEAGLLYAA 75 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~---~r~~GaDvVGM-Stv-----PEvilAre~Gm~~~~ 75 (148)
|-..+.+-+.+.+++.|+.+. +.... .+....+.+. +...+.|.|=. ..- +.+..+++.|++++.
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~----~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~ 87 (313)
T 2h3h_A 14 YWSQVEQGVKAAGKALGVDTK----FFVPQ--KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVT 87 (313)
T ss_dssp HHHHHHHHHHHHHHHHTCEEE----EECCS--SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEE----EECCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEE
Confidence 667788888999999887643 22111 3333344444 44568886543 222 234456788999887
Q ss_pred EEe
Q psy17033 76 VAM 78 (148)
Q Consensus 76 is~ 78 (148)
+.-
T Consensus 88 ~~~ 90 (313)
T 2h3h_A 88 LDT 90 (313)
T ss_dssp ESS
T ss_pred eCC
Confidence 643
No 136
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.25 E-value=1.4e+02 Score=22.84 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=44.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHH---HHHcCCCeeeccc----chHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL---FRSWNAHLVNMTL----VPEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~---~r~~GaDvVGMSt----vPEvilAre~Gm~~~ 74 (148)
.+||-.++.+-+.+.|++.|+.+. ++.. .+....|.+. +...+.|-|=... -+....+++.|++++
T Consensus 73 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV 145 (339)
T 3h5o_A 73 ANTVFLETLTGIETVLDAAGYQML-----IGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQHALPVV 145 (339)
T ss_dssp TTCTTHHHHHHHHHHHHHTTCEEE-----EEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEE-----EEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhcCCCCEE
Confidence 578999999999999999998753 2222 2233344444 4446777553322 133445778899998
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 146 ~~~ 148 (339)
T 3h5o_A 146 YMM 148 (339)
T ss_dssp EEE
T ss_pred EEe
Confidence 773
No 137
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=31.17 E-value=26 Score=27.30 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=42.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccchHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+.+. +....+ ...| ++.+...+.|-|=.... ...+++.|++++.+.
T Consensus 75 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~--~~~~~~~~iPvV~~~ 143 (333)
T 3jvd_A 75 SNEYYSESLQTIQQDLKAAGYQML----VAEANS----VQAQDVVMESLISIQAAGIIHVPV--VGSIAPEGIPMVQLT 143 (333)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEEE----EEECCS----HHHHHHHHHHHHHHTCSEEEECCC--TTCCC-CCSCEEEEC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEE----EECCCC----hHHHHHHHHHHHhCCCCEEEEcch--HHHHhhCCCCEEEEC
Confidence 568888999999999999998754 222222 2223 34455668886655544 334567789887764
No 138
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.90 E-value=1.2e+02 Score=23.25 Aligned_cols=69 Identities=6% Similarity=-0.002 Sum_probs=42.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc---hH-H-HHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV---PE-V-VLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv---PE-v-ilAre~Gm~~ 73 (148)
.++|-.++.+-+.+.+++.|+.+. ++.. ......|. +.+...+.|-|=.... .+ . .++++.|+++
T Consensus 74 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPv 146 (338)
T 3dbi_A 74 HGIYFSELLFHAARMAEEKGRQLL-----LADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPI 146 (338)
T ss_dssp STTHHHHHHHHHHHHHHHTTCEEE-----EEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCE
T ss_pred cChhHHHHHHHHHHHHHHCCCEEE-----EEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCE
Confidence 578889999999999999998654 2222 22223333 4455567876544321 12 2 3466778998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 147 V~~~ 150 (338)
T 3dbi_A 147 MVLN 150 (338)
T ss_dssp EEES
T ss_pred EEEc
Confidence 7664
No 139
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=30.84 E-value=1.7e+02 Score=22.01 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=45.4
Q ss_pred CCcccCHHHHHHHHHHHHHhCC----ceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccchH--HHHHHHcCC
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGF----KFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLVPE--VVLAKEAGL 71 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi----~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStvPE--vilAre~Gm 71 (148)
+++||-.++.+-+.+.+++.|+ .+. +.++-.. .....| ++.|+..+.|.|=.+..+. .......|+
T Consensus 17 ~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~---l~~~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~i 91 (302)
T 2qh8_A 17 VEHPALDATRQGLLDGLKAKGYEEGKNLE---FDYKTAQ--GNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATKTI 91 (302)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCBTTTEE---EEEEECT--TCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHHHCSSS
T ss_pred ccChhHHHHHHHHHHHHHHcCCCCCCceE---EEEecCC--CCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHhcCCCc
Confidence 3678889999999999999988 332 2223222 222233 4556678888876554432 222235689
Q ss_pred ceeEEEe
Q psy17033 72 LYAAVAM 78 (148)
Q Consensus 72 ~~~~is~ 78 (148)
+++.+..
T Consensus 92 PvV~~~~ 98 (302)
T 2qh8_A 92 PIVFTAV 98 (302)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9888764
No 140
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=30.66 E-value=1e+02 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=10.8
Q ss_pred CHHHHHHHHHc-CCCeeeccc
Q psy17033 40 SRAESNLFRSW-NAHLVNMTL 59 (148)
Q Consensus 40 T~AE~r~~r~~-GaDvVGMSt 59 (148)
|..|......+ |+|+||.+.
T Consensus 159 ~~eE~~~A~~l~g~~iIGinn 179 (251)
T 1i4n_A 159 SREDLEKVFSVIRPKIIGINT 179 (251)
T ss_dssp SHHHHHHHHTTCCCSEEEEEC
T ss_pred CHHHHHHHHhcCCCCEEEEeC
Confidence 45555555555 555555543
No 141
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=30.50 E-value=65 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHHHcCCC-eeecccchHHHHHHHcCCceeEE
Q psy17033 44 SNLFRSWNAH-LVNMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 44 ~r~~r~~GaD-vVGMStvPEvilAre~Gm~~~~i 76 (148)
++..|.+|.+ ++|..|.-|+..|.++|..|+++
T Consensus 103 ~~~ar~~g~~~i~Gv~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 103 VKLCQDLNFPITPGVNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCCEEeccCCHHHHHHHHHCCCCEEEE
Confidence 5677778877 57999999999999999999998
No 142
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=30.45 E-value=1.2e+02 Score=19.94 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCc----eecceEEEEeCCCCCCCHHHHHHHHHcC
Q psy17033 9 TRQIIIDSLKELGFK----FHDKGTAVCIEGPRFSSRAESNLFRSWN 51 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~----~~~~GvY~~~~GP~fET~AE~r~~r~~G 51 (148)
.|..+...|+++|+. -...||.+.++||. -+=+..++.-|
T Consensus 22 FR~~v~~~A~~lgL~G~VrN~~dGVei~~eG~~---~~f~~~l~~~~ 65 (91)
T 1gxu_A 22 FRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDP---EVFLVQLYQHC 65 (91)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSEEEEESSCC---HHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCcEEEEEEECH---HHHHHHHhhCC
Confidence 477888999999984 23477999999998 23344555433
No 143
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=30.17 E-value=96 Score=23.80 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHH
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVL 65 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvil 65 (148)
+.+.+.+.+++.|+. .-||+++ ..++++.+.+..+|+|-| +|-.|+...
T Consensus 210 ~~~~~v~~~~~~Glg---~~V~~WT----vn~~~~~~~l~~~GVDgI-iTD~P~~~~ 258 (285)
T 1xx1_A 210 LKEAIKSRDSANGFI---NKIYYWS----VDKVSTTKAALDVGVDGI-MTNYPNVLI 258 (285)
T ss_dssp HHHHHHHHTSTTCCC---CEEEEEC----CCSHHHHHHHHHHTCSEE-EESCHHHHH
T ss_pred HhHHHHHHHHhcCCC---CeEEEee----CCCHHHHHHHHhcCCCEE-EeCCHHHHH
Confidence 444455555555652 1366774 468999999999999988 688898643
No 144
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.12 E-value=46 Score=24.50 Aligned_cols=71 Identities=10% Similarity=-0.145 Sum_probs=35.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCC-HHHHHHHHHcCCCeeec-ccc-h--HHHHHHHcCCceeEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSS-RAESNLFRSWNAHLVNM-TLV-P--EVVLAKEAGLLYAAV 76 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET-~AE~r~~r~~GaDvVGM-Stv-P--EvilAre~Gm~~~~i 76 (148)
.++|-.++.+-+.+.+++.|+.+. + +..+...+. ..-++.+...+.|.|=+ +.- + .+..+++.|++++.+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~----~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~iPvV~~ 84 (276)
T 2h0a_A 10 ATEFYRRLVEGIEGVLLEQRYDLA----L-FPILSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLV 84 (276)
T ss_dssp CCHHHHHHHHHHHHHHGGGTCEEE----E-CCCCSCCCCC---------CCCSEEEEESCCCC------CCSCSSCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEE----E-EeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCCCEEEE
Confidence 568888999999999999987653 1 222222222 12244556667775433 221 2 223345568888765
Q ss_pred E
Q psy17033 77 A 77 (148)
Q Consensus 77 s 77 (148)
.
T Consensus 85 ~ 85 (276)
T 2h0a_A 85 D 85 (276)
T ss_dssp S
T ss_pred e
Confidence 3
No 145
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=30.03 E-value=1.4e+02 Score=23.89 Aligned_cols=76 Identities=11% Similarity=-0.057 Sum_probs=46.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCeeeccc---chHHHHHHHcCCceeEEE-eeeccccccCCCCCCCHHHHHHHHHHH
Q psy17033 29 TAVCIEGPRFSSRAESNLFRSWNAHLVNMTL---VPEVVLAKEAGLLYAAVA-MATDYDCWRDTGNKVCVADVLKTFKEN 104 (148)
Q Consensus 29 vY~~~~GP~fET~AE~r~~r~~GaDvVGMSt---vPEvilAre~Gm~~~~is-~VTN~a~~~~~~~~v~~eeVl~~~~~~ 104 (148)
.|...+-.+--|....|-++.-| +.+-|-| .+-+.++-++|+..+.+. -..+...|.++..++|.+|++...+..
T Consensus 6 ~~~~~~~~~~~t~~~lr~~~~~g-~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV 84 (275)
T 3vav_A 6 TYLQESSRPAVTVPKLQAMREAG-EKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACV 84 (275)
T ss_dssp -------CCCCCHHHHHHHHHHT-CCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHH
T ss_pred CccCccccCCcCHHHHHHHHHCC-CcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHH
Confidence 35555544455888888888877 4444444 467888888999988443 222333466656789999988766644
Q ss_pred H
Q psy17033 105 V 105 (148)
Q Consensus 105 ~ 105 (148)
.
T Consensus 85 ~ 85 (275)
T 3vav_A 85 A 85 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=29.97 E-value=44 Score=26.17 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH-HHHHHcCCCeeeccc
Q psy17033 8 STRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTL 59 (148)
Q Consensus 8 ~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~-r~~r~~GaDvVGMSt 59 (148)
.+++.+...|+..|+++ |+++ . +|... +.|..+|.+.+.|+.
T Consensus 195 ~a~~~iv~aa~aaG~~~---g~~~--~-----~~~~~~~~~~~~G~~~~s~~~ 237 (261)
T 3qz6_A 195 ECYEKVYRAADRQGVVK---GFFT--A-----ADAAKMGWAVERGAQMLLWSG 237 (261)
T ss_dssp HHHHHHHHHHHHHTCEE---EEEE--S-----SCGGGGHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCE---EEEe--C-----CHHHHHHHHHHCCCCEEEEhh
Confidence 35666777788888874 5653 1 45555 788888888887653
No 147
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=29.79 E-value=55 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=32.0
Q ss_pred HHHHHHHHHHH-hCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCe
Q psy17033 9 TRQIIIDSLKE-LGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 9 Lr~~~~~~a~~-~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDv 54 (148)
....++..|++ .|+.+...|+|-...|=..+...|-..|+.+|-+-
T Consensus 306 fnr~lR~~A~~~kG~~L~e~Gl~~~~~~~~i~~~~E~~If~~LGl~y 352 (360)
T 2ihm_A 306 FERELRRFSRQEKGLWLNSHGLFDPEQKRVFHATSEEDVFRLLGLKY 352 (360)
T ss_dssp HHHHHHHHHHHHHSCEECSSCEECSSTTCCCCCSSHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCcCccccccCCCCccCCCCCHHHHHHHcCCCC
Confidence 33445556664 89999889999544444577777888888888553
No 148
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=29.67 E-value=64 Score=25.04 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHcCCCeeecccchHHH
Q psy17033 39 SSRAESNLFRSWNAHLVNMTLVPEVV 64 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvVGMStvPEvi 64 (148)
.++++.+.+..+|+|-| +|-.|+..
T Consensus 250 n~~~~~~~l~~~GVdgI-iTD~P~~~ 274 (287)
T 2oog_A 250 NEKADMLRLNKYGVDGV-FTNFADKY 274 (287)
T ss_dssp CSHHHHHHHHHHTCSEE-EESCHHHH
T ss_pred CCHHHHHHHHHcCCCEE-EeCCHHHH
Confidence 56777777777777777 56666643
No 149
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=29.64 E-value=9.7 Score=24.88 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=22.8
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHH
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRA 42 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~A 42 (148)
.|=|+++|.++.++|. ||.-.||.||...
T Consensus 11 pP~d~~~~~iIdktA~-----------fVaknG~~fE~~l 39 (78)
T 1x4o_A 11 PPEDEEAKNLAEKLAR-----------FIADGGPEVETIA 39 (78)
T ss_dssp CCSCHHHHHHHHHHHH-----------HHHHSCTTHHHHH
T ss_pred CcCCHHHHHHHHHHHH-----------HHHHcCHHHHHHH
Confidence 4668899999999985 6666789998654
No 150
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=29.61 E-value=1.4e+02 Score=22.51 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHhCCc
Q psy17033 6 DNSTRQIIIDSLKELGFK 23 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~ 23 (148)
+++-...+.+.+.+.|..
T Consensus 130 ~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 130 NEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp CHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 333333344445555554
No 151
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=29.59 E-value=93 Score=22.93 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=38.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc--c--hHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL--V--PEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt--v--PEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+.+. ++..-..|..+.. . +.|.|=... . +....+++.|++++.+.
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~---~~~~~~~~~~~~~----~----~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~ 87 (277)
T 3cs3_A 19 GGSFYGELLEGIKKGLALFDYEMI---VCSGKKSHLFIPE----K----MVDGAIILDWTFPTKEIEKFAERGHSIVVLD 87 (277)
T ss_dssp CTTTHHHHHHHHHHHHHTTTCEEE---EEESTTTTTCCCT----T----TCSEEEEECTTSCHHHHHHHHHTTCEEEESS
T ss_pred CChhHHHHHHHHHHHHHHCCCeEE---EEeCCCCHHHHhh----c----cccEEEEecCCCCHHHHHHHHhcCCCEEEEe
Confidence 578888999999999999998754 2221122332221 1 666443322 1 22334566788877653
No 152
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=29.54 E-value=52 Score=25.96 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHH
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVV 64 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvi 64 (148)
.+.+.+++.|+. ||+++ ..++++.+.+..+|+|-| +|-.|+..
T Consensus 259 ~~v~~~~~~Gl~-----V~~WT----Vn~~~~~~~l~~~GVDgI-iTD~P~~~ 301 (313)
T 3l12_A 259 ELVAEAHDLGLI-----VLTWT----VNEPEDIRRMATTGVDGI-VTDYPGRT 301 (313)
T ss_dssp HHHHHHHHTTCE-----EEEBC----CCSHHHHHHHHHHTCSEE-EESCHHHH
T ss_pred HHHHHHHHCCCE-----EEEEc----CCCHHHHHHHHHcCCCEE-EeCCHHHH
Confidence 344455555554 44444 257788888888888876 46666643
No 153
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=29.40 E-value=1.4e+02 Score=24.53 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHcCCCeeec
Q psy17033 39 SSRAESNLFRSWNAHLVNM 57 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvVGM 57 (148)
-|+.+.+.+...|+|.|..
T Consensus 158 ~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 158 ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CSHHHHHHHHHHTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 4788888888888888765
No 154
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=29.37 E-value=95 Score=23.05 Aligned_cols=68 Identities=9% Similarity=0.000 Sum_probs=40.7
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecc-c-ch-H-HHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMT-L-VP-E-VVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMS-t-vP-E-vilAre~Gm~~~ 74 (148)
.++|-..+.+-+.+.+++.|+.+. +. .. ......|. +.+...+.|.|=.. . .+ + ...++ .|++++
T Consensus 19 ~~~~~~~~~~gi~~~~~~~g~~~~----~~-~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~-~~iPvV 90 (285)
T 3c3k_A 19 ANPFCAAVVKGIEKTAEKNGYRIL----LC-NT--ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII-GAFPWV 90 (285)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEE----EE-EC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH-TTSSEE
T ss_pred CCchHHHHHHHHHHHHHHcCCEEE----EE-eC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh-cCCCEE
Confidence 467888899999999999998753 22 22 22222333 34455678855332 2 22 2 22345 799987
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 91 ~~~ 93 (285)
T 3c3k_A 91 QCA 93 (285)
T ss_dssp EES
T ss_pred EEc
Confidence 764
No 155
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=28.45 E-value=1.5e+02 Score=20.69 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCceecceEEEEeC-----CCCCCCHHHH-HHHHHcCCC-----eeecccchHHHHHHHcCCceeEEE
Q psy17033 11 QIIIDSLKELGFKFHDKGTAVCIE-----GPRFSSRAES-NLFRSWNAH-----LVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 11 ~~~~~~a~~~gi~~~~~GvY~~~~-----GP~fET~AE~-r~~r~~GaD-----vVGMStvPEvilAre~Gm~~~~is 77 (148)
..+....+.+|+.-....+|..-. |++=..|.=. +.++.+|.+ +||=+....+..|+.+||+.+.+.
T Consensus 65 ~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~ 142 (189)
T 3ib6_A 65 EVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQ 142 (189)
T ss_dssp HHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEEEEESBTTTTHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHCCCeEEEEC
Confidence 445555666777533255555433 3333344333 356678864 788776789999999999987664
No 156
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=28.42 E-value=1.2e+02 Score=19.59 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHc
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEA 69 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~ 69 (148)
....+...++.++. ..+++...+|.+ .+.++..|+|.| ..||-+.++.+
T Consensus 82 ~~~~~~~~~~~~~~----~~ii~~~~~~~~-----~~~l~~~g~~~v---~~p~~~~~~~~ 130 (140)
T 1lss_A 82 VNLMSSLLAKSYGI----NKTIARISEIEY-----KDVFERLGVDVV---VSPELIAANYI 130 (140)
T ss_dssp HHHHHHHHHHHTTC----CCEEEECSSTTH-----HHHHHHTTCSEE---ECHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC----CEEEEEecCHhH-----HHHHHHcCCCEE---ECHHHHHHHHH
Confidence 33445566666553 236667777765 246678887755 67887777664
No 157
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=28.35 E-value=2e+02 Score=22.08 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCce--ec----------ceEEEEeCCCCCCCHHHHHHHHHcCCCeeecc--cchHHHHHHHcCCceeEE
Q psy17033 11 QIIIDSLKELGFKF--HD----------KGTAVCIEGPRFSSRAESNLFRSWNAHLVNMT--LVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 11 ~~~~~~a~~~gi~~--~~----------~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMS--tvPEvilAre~Gm~~~~i 76 (148)
+.+++.+++.|+++ ++ .||.+ |-.--...+.|.+...+ -.||+| +.-|+..|.+.|..|+++
T Consensus 86 ~~l~~l~~~~~~~liInd~~~lA~~~gAdGVHL---g~~dl~~~~~r~~~~~~-~~iG~S~ht~~Ea~~A~~~GaDyI~v 161 (243)
T 3o63_A 86 EILADAAHRYGALFAVNDRADIARAAGADVLHL---GQRDLPVNVARQILAPD-TLIGRSTHDPDQVAAAAAGDADYFCV 161 (243)
T ss_dssp HHHHHHHHHTTCEEEEESCHHHHHHHTCSEEEE---CTTSSCHHHHHHHSCTT-CEEEEEECSHHHHHHHHHSSCSEEEE
T ss_pred HHHHHHHHhhCCEEEEeCHHHHHHHhCCCEEEe---cCCcCCHHHHHHhhCCC-CEEEEeCCCHHHHHHHhhCCCCEEEE
Confidence 44566667766642 11 35433 22223456666543322 467776 566888888999999999
Q ss_pred Eee
Q psy17033 77 AMA 79 (148)
Q Consensus 77 s~V 79 (148)
+-|
T Consensus 162 gpv 164 (243)
T 3o63_A 162 GPC 164 (243)
T ss_dssp CCS
T ss_pred cCc
Confidence 765
No 158
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=28.28 E-value=2e+02 Score=21.93 Aligned_cols=72 Identities=8% Similarity=-0.157 Sum_probs=46.4
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeec-ccchHH----HHHHHcCCceeEEE
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM-TLVPEV----VLAKEAGLLYAAVA 77 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGM-StvPEv----ilAre~Gm~~~~is 77 (148)
..|..+..+.+++..++.|+++... .+.-.... .-.+..+.++..++|+|=. ..-..+ ..+++.|+++--++
T Consensus 161 ~~~~~~~~~~~~~~l~~~G~~v~~~-~~~~~~~~--d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp~~~ 237 (375)
T 4evq_A 161 YAAGEEMVSGFKKSFTAGKGEVVKD-ITIAFPDV--EFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIPLWG 237 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEE-EEECTTCC--CCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCCEEE
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEE-EecCCCCc--cHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCceEEe
Confidence 3466677788888999999987522 22222223 3346677788889999987 444443 23678898755443
No 159
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=28.06 E-value=1.6e+02 Score=22.29 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHcCCCeeecccchH
Q psy17033 39 SSRAESNLFRSWNAHLVNMTLVPE 62 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvVGMStvPE 62 (148)
.++++.+.+..+|+|-|- |-.|+
T Consensus 213 n~~~~~~~l~~~GVDgIi-TD~P~ 235 (250)
T 3ks6_A 213 HTPSQITKALDLGVKVFT-TDRPT 235 (250)
T ss_dssp CSHHHHHHHHHHTCSEEE-ESCHH
T ss_pred CCHHHHHHHHHcCCCEEE-cCCHH
Confidence 456666666666666542 33443
No 160
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=28.01 E-value=85 Score=29.25 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc--chHHHH
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL--VPEVVL 65 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt--vPEvil 65 (148)
|.+.+.+.+++.+-.+. |-+|=+.|.- |.-+.+|-.+|-|-|.||- ||.+.+
T Consensus 836 li~~a~~~gr~~~~~i~---vgICGE~~gd--P~~~~~L~~~Gid~~S~sP~~Vp~~r~ 889 (913)
T 2x0s_A 836 LVRIAVTKGRRVKPMLK---MGICGEHGGD--PATIGFCHKVGLDYVSCSPFRVPVAIV 889 (913)
T ss_dssp HHHHHHHHHHHHSTTCE---EEECSGGGGC--HHHHHHHHHHTCSEEEECGGGHHHHHH
T ss_pred HHHHHHHHhhhcCCCCe---EEEeCCcccC--HHHHHHHHHcCCCEEEEChHHHHHHHH
Confidence 44444444554443232 4566677774 8899999999999999984 676664
No 161
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=27.98 E-value=46 Score=27.20 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCceecceEEEE----------eCCCCCCCHHHHHHHHHcCCCe
Q psy17033 8 STRQIIIDSLKELGFKFHDKGTAVC----------IEGPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 8 ~Lr~~~~~~a~~~gi~~~~~GvY~~----------~~GP~fET~AE~r~~r~~GaDv 54 (148)
.....++..|++.|+++...|+|-. ..|-..+...|-..|+.+|-+-
T Consensus 271 ~fnr~lR~~A~~~G~kL~e~Gl~~~~~r~~~~~~~~~~~~~~~~~E~~If~~LGl~y 327 (335)
T 2bcq_A 271 HFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPY 327 (335)
T ss_dssp HHHHHHHHHHHHTTCEECSSCEEESCEECTTSCEEECCEECCCSSHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCccccccccccccccccccccCCCcCCCCCHHHHHHHcCCCC
Confidence 3444556667778999988899842 1344566667888888888553
No 162
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=27.46 E-value=66 Score=24.25 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeeccc----chHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTL----VPEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMSt----vPEvilAre~Gm~~~ 74 (148)
.++|-.++.+-+.+.|++.|+.+. ++..+ .....| ++.+...+.|-|=... -+....+++.|++++
T Consensus 38 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV 110 (305)
T 3huu_A 38 QNPFNSDVLNGINQACNVRGYSTR-----MTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYL 110 (305)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCEEE-----ECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEE
T ss_pred cCcHHHHHHHHHHHHHHHCCCEEE-----EEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHcCCCEE
Confidence 467888999999999999988654 22222 122222 3445566788654332 233445678899988
Q ss_pred EEEe
Q psy17033 75 AVAM 78 (148)
Q Consensus 75 ~is~ 78 (148)
.+.-
T Consensus 111 ~i~~ 114 (305)
T 3huu_A 111 IVGK 114 (305)
T ss_dssp EESC
T ss_pred EECC
Confidence 7653
No 163
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=27.30 E-value=76 Score=23.65 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=41.9
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccc-h---HH-HHHHHcCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLV-P---EV-VLAKEAGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStv-P---Ev-ilAre~Gm~~ 73 (148)
.++|-..+.+-+.+.+++.|+.+. +... ......| ++.+...+.|.|=.... + +. ..+++.|+++
T Consensus 31 ~~~~~~~~~~gi~~~~~~~g~~~~----~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPv 103 (293)
T 2iks_A 31 ENTSYTRIANYLERQARQRGYQLL----IACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPI 103 (293)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEE----EEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCE
T ss_pred cCcHHHHHHHHHHHHHHHCCCEEE----EEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCE
Confidence 467888899999999999998654 2222 2222333 34455678886543322 1 22 2345678998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 104 V~~~ 107 (293)
T 2iks_A 104 VALD 107 (293)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7764
No 164
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.18 E-value=82 Score=23.44 Aligned_cols=72 Identities=8% Similarity=0.046 Sum_probs=38.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCH-HHHHHHHHcCCCeeeccc-c-h--HHHHHHHcCCceeEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSR-AESNLFRSWNAHLVNMTL-V-P--EVVLAKEAGLLYAAV 76 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~-AE~r~~r~~GaDvVGMSt-v-P--EvilAre~Gm~~~~i 76 (148)
.++|-..+.+-+.+.+++.|+.+. +....+...+.. .-++.+...+.|.|=... - + ....+++.|++++.+
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~ 94 (290)
T 3clk_A 19 RTNFAQQILDGIQEEAHKNGYNLI----IVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQLLQSSDVPYCFL 94 (290)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCEEE----EEC----------CHHHHHHSSCCSEEEEESCC----CHHHHHCC--CEEEE
T ss_pred CChHHHHHHHHHHHHHHHcCCeEE----EEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHHHHHhCCCCEEEE
Confidence 567888999999999999988654 220111111111 113455567788654322 1 2 233456678998776
Q ss_pred E
Q psy17033 77 A 77 (148)
Q Consensus 77 s 77 (148)
.
T Consensus 95 ~ 95 (290)
T 3clk_A 95 S 95 (290)
T ss_dssp S
T ss_pred c
Confidence 4
No 165
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=27.10 E-value=2.1e+02 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=23.0
Q ss_pred CHHHHHHHHHcCCCe-eecccchHHHHHHHcCCceeEE
Q psy17033 40 SRAESNLFRSWNAHL-VNMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 40 T~AE~r~~r~~GaDv-VGMStvPEvilAre~Gm~~~~i 76 (148)
++.=++..+..|..+ -|-+|..|+..|.++|..|+.+
T Consensus 116 ~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 116 NPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp CHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 444555555555443 3666777777777777777765
No 166
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=27.04 E-value=1.1e+02 Score=23.34 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=39.7
Q ss_pred cccCHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeec-ccchH-----HHHHHHcCCc
Q psy17033 3 PAFDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNM-TLVPE-----VVLAKEAGLL 72 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGM-StvPE-----vilAre~Gm~ 72 (148)
++|-..+.+-+.+.+++. |+.+. +.. . ......| ++.+...+.|.|=. +.-++ +..+++.|++
T Consensus 17 ~~~~~~~~~gi~~~a~~~~g~~l~----i~~-~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iP 89 (325)
T 2x7x_A 17 DSWRHKMNDEILREAMFYNGVSVE----IRS-A--GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIP 89 (325)
T ss_dssp SHHHHHHHHHHHHHHTTSSSCEEE----EEE-C--TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHcCCcEEE----EeC-C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 567777888888888887 77653 222 1 2222333 34455578885543 33322 2335567999
Q ss_pred eeEEE
Q psy17033 73 YAAVA 77 (148)
Q Consensus 73 ~~~is 77 (148)
++.+.
T Consensus 90 vV~~~ 94 (325)
T 2x7x_A 90 VILVD 94 (325)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 88764
No 167
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=26.58 E-value=54 Score=23.82 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=17.2
Q ss_pred CHHHHHHHHHcCCCeeecc
Q psy17033 40 SRAESNLFRSWNAHLVNMT 58 (148)
Q Consensus 40 T~AE~r~~r~~GaDvVGMS 58 (148)
|+.|++....+|+|+|...
T Consensus 113 t~~e~~~a~~~Gad~vk~~ 131 (205)
T 1wa3_A 113 TPTELVKAMKLGHTILKLF 131 (205)
T ss_dssp SHHHHHHHHHTTCCEEEET
T ss_pred CHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999854
No 168
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=26.54 E-value=2.2e+02 Score=22.60 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcC----------------------------CceeEEEeeeccccccCCCCCC
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAG----------------------------LLYAAVAMATDYDCWRDTGNKV 92 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~G----------------------------m~~~~is~VTN~a~~~~~~~~v 92 (148)
+.-.++++.+||..|.|+. +|+..|-+-| ..+....++.|.+.|.. -.+=
T Consensus 166 ~~~~~~~~alGa~pv~m~~-~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~~~~h~~~~~~~~~n~~~w~~-L~~e 243 (328)
T 3u65_B 166 SVLGTCFRICGFDIKDAPN-ARLAPLLKAGSIDGFLSVHLFTWATGFYRYISYALDTKICPAVIGMLISDGSWAR-IPSR 243 (328)
T ss_dssp HHHHHHHHHHTCEEEECTT-CCHHHHHHHTSCCEEEECHHHHHHSCGGGGCCEEECSCCEEEEEEEEEEHHHHTT-SCGG
T ss_pred hHHHHHHHHCCCeeeecCH-HHHHHHHHcCccceEecCHHHHHHcchhhcCcEEEEcCccccceEEEEcHHHHhc-CCHH
Confidence 5677899999999999864 7777776554 34556678888877763 1222
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy17033 93 CVADVLKTFKENVEKITKL 111 (148)
Q Consensus 93 ~~eeVl~~~~~~~~~~~~l 111 (148)
..+-|.+.+++......+.
T Consensus 244 ~q~~i~~a~~e~~~~~~~~ 262 (328)
T 3u65_B 244 YHDAMLQAATRVRQRLANN 262 (328)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333555555554444433
No 169
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=26.50 E-value=1.3e+02 Score=25.20 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeec
Q psy17033 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNM 57 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGM 57 (148)
...+.+.+.++.+..++++.- | .--|+.|.+.+...|+|.|..
T Consensus 169 ~~~~~e~I~~ik~~~~i~Vi~-g--------~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 169 SLNIIRTLKEIKSKMNIDVIV-G--------NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp BHHHHHHHHHHHTTCCCEEEE-E--------EECSHHHHHHHHHTTCSEEEE
T ss_pred cccHHHHHHHHHhcCCCeEEE-e--------ecCCHHHHHHHHHcCCCEEEE
Confidence 344555555554444554431 1 225888888888999988765
No 170
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.40 E-value=96 Score=23.88 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=43.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc----hHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV----PEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv----PEvilAre~Gm~~~ 74 (148)
.+||-.++.+-+.+.+++.|+.+. ++.. .+....|.+ .+...+.|-|=.... +....+++.|++++
T Consensus 79 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV 151 (344)
T 3kjx_A 79 SNMVFPEVLTGINQVLEDTELQPV-----VGVT--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVV 151 (344)
T ss_dssp SSSSHHHHHHHHHHHHTSSSSEEE-----EEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEE
T ss_pred CcHHHHHHHHHHHHHHHHCCCEEE-----EEeC--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEE
Confidence 578888999999999998887653 2222 223333444 344567776544321 23344678899998
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 152 ~i~ 154 (344)
T 3kjx_A 152 EIM 154 (344)
T ss_dssp EEE
T ss_pred EEe
Confidence 873
No 171
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=26.37 E-value=32 Score=30.42 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=32.1
Q ss_pred CcccCHHHHHHHHH---HHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecc
Q psy17033 2 EPAFDNSTRQIIID---SLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMT 58 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~---~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMS 58 (148)
.+||+|.+.+.+.. .|++.|++ +.+-|--=-.|+..+++..+|.|-+.|+
T Consensus 476 ~dp~~paVl~li~~vv~aa~~~g~~-------vgiCGe~agdp~~~~~l~~lG~~~~S~~ 528 (572)
T 2wqd_A 476 YQPYNPSILRLVKQVIEASHKEGKW-------TGMCGEMAGDETAIPLLLGLGLDEFSMS 528 (572)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHTTCE-------EEECSGGGGCTTTHHHHHHHTCCEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCe-------EEEeCCccCCHHHHHHHHHCCCCEEEec
Confidence 36778866655554 45555554 3333322236788899999999988765
No 172
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=26.32 E-value=1.4e+02 Score=21.48 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=30.0
Q ss_pred HHHHHhCCceecceEEEEeCCCCCCCHHHH-HHHHHcCCCeeeccc----c-hH-HHHHHHcCCceeEEEeeec
Q psy17033 15 DSLKELGFKFHDKGTAVCIEGPRFSSRAES-NLFRSWNAHLVNMTL----V-PE-VVLAKEAGLLYAAVAMATD 81 (148)
Q Consensus 15 ~~a~~~gi~~~~~GvY~~~~GP~fET~AE~-r~~r~~GaDvVGMSt----v-PE-vilAre~Gm~~~~is~VTN 81 (148)
+.+.+.|.. |+-+... +.-++..+. +..+..|..+ |.+. - .| +..+.+.|..|+++....+
T Consensus 71 ~~a~~~Gad----~v~vh~~-~~~~~~~~~~~~~~~~g~~~-gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~ 138 (207)
T 3ajx_A 71 DIAFKAGAD----LVTVLGS-ADDSTIAGAVKAAQAHNKGV-VVDLIGIEDKATRAQEVRALGAKFVEMHAGLD 138 (207)
T ss_dssp HHHHHTTCS----EEEEETT-SCHHHHHHHHHHHHHHTCEE-EEECTTCSSHHHHHHHHHHTTCSEEEEECCHH
T ss_pred HHHHhCCCC----EEEEecc-CChHHHHHHHHHHHHcCCce-EEEEecCCChHHHHHHHHHhCCCEEEEEeccc
Confidence 455555543 3333322 222344444 3555667664 4433 2 34 3345667888876655444
No 173
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=25.75 E-value=1.1e+02 Score=24.83 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc
Q psy17033 11 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59 (148)
Q Consensus 11 ~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt 59 (148)
+.+..+.+..++++.-+|+ -|+.+.+.+...|+|.|..|+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~---------~~~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGV---------ITAEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp HHHHHHHHHCCSCEEEECC---------CSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHhCCCEEEEec---------CCHHHHHHHHHcCCCEEEECC
Confidence 4566666667777653454 578999999999999998865
No 174
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=25.66 E-value=91 Score=23.48 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=8.7
Q ss_pred CHHHHHHHHHcCCCee
Q psy17033 40 SRAESNLFRSWNAHLV 55 (148)
Q Consensus 40 T~AE~r~~r~~GaDvV 55 (148)
++++.+.+..+|+|.|
T Consensus 217 ~~~~~~~l~~~GvdgI 232 (247)
T 2otd_A 217 KPQHAAELLRWGVDCI 232 (247)
T ss_dssp CHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHcCCCEE
Confidence 4555555555555544
No 175
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=25.63 E-value=1.1e+02 Score=23.11 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=27.4
Q ss_pred HHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHH
Q psy17033 13 IIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV 63 (148)
Q Consensus 13 ~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEv 63 (148)
+.+.+++.|+. ||+++ -.++++.+.+..+|+|-|- |-.|+.
T Consensus 188 ~v~~~~~~G~~-----v~~WT----Vn~~~~~~~l~~~GVdgIi-TD~P~~ 228 (238)
T 3no3_A 188 WVKDCKVLGMT-----SNVWT----VDDPKLMEEMIDMGVDFIT-TDLPEE 228 (238)
T ss_dssp HHHHHHHTTCE-----EEEEC----CCSHHHHHHHHHHTCSEEE-ESCHHH
T ss_pred HHHHHHHCCCE-----EEEEC----CCCHHHHHHHHHcCCCEEE-CCCHHH
Confidence 45556667765 45554 3688999999999998753 445543
No 176
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.58 E-value=56 Score=24.56 Aligned_cols=69 Identities=4% Similarity=0.050 Sum_probs=42.2
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHH---HHHHHcCCCeeecccc---hH-HHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES---NLFRSWNAHLVNMTLV---PE-VVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~---r~~r~~GaDvVGMStv---PE-vilAre~Gm~~~ 74 (148)
.+||-.++.+-+.+.|++.|+.+. ++..+ .....|. +.+...+.|-|=.... .+ ...+++.|++++
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~-----~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV 95 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQ-----TTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFI 95 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEE-----ECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEE
T ss_pred cChHHHHHHHHHHHHHHHCCCEEE-----EEcCC--CChHHHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEE
Confidence 467888999999999999887653 22221 1222233 4555667776543321 22 344677899988
Q ss_pred EEE
Q psy17033 75 AVA 77 (148)
Q Consensus 75 ~is 77 (148)
.+.
T Consensus 96 ~i~ 98 (295)
T 3hcw_A 96 VIG 98 (295)
T ss_dssp EES
T ss_pred EEC
Confidence 664
No 177
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.58 E-value=2e+02 Score=24.13 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCceecceEEEEeCCCCCCCH----------HHH-HHHHHcCCCeeecccchHHHHHHHcCCceeEEE
Q psy17033 9 TRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSR----------AES-NLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~----------AE~-r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is 77 (148)
+---+.+...++|+.+. ++......|.|+.. .|. ++++..++|++- ++..|..+|+.+|++++-++
T Consensus 324 ~~~~l~~~L~elGm~vv--~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~pDlli-g~~~~~~~a~k~gip~~~~g 400 (458)
T 3pdi_B 324 LLLGFDALLRSMGAHTV--AAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQAQLVI-GNSHALASARRLGVPLLRAG 400 (458)
T ss_dssp HHHHHHHHHHTTTCEEE--EEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHTCSEEE-ECTTHHHHHHHTTCCEEECS
T ss_pred HHHHHHHHHHHCCCEEE--EEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcCCCEEE-EChhHHHHHHHcCCCEEEec
Confidence 33344555678888865 45555566776642 232 356788999986 66778999999999988665
Q ss_pred ee
Q psy17033 78 MA 79 (148)
Q Consensus 78 ~V 79 (148)
+-
T Consensus 401 fP 402 (458)
T 3pdi_B 401 FP 402 (458)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 178
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=25.51 E-value=1.3e+02 Score=22.80 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=25.9
Q ss_pred HHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHH
Q psy17033 13 IIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV 63 (148)
Q Consensus 13 ~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEv 63 (148)
+.+.+++.|++ ||+++ ..++.+.+.+..+|+|-|- |-.|+.
T Consensus 202 ~v~~~~~~G~~-----v~~WT----vn~~~~~~~l~~~GVdgIi-TD~P~~ 242 (252)
T 3qvq_A 202 QVSDIKAAGYK-----VLAFT----INDESLALKLYNQGLDAVF-SDYPQK 242 (252)
T ss_dssp HHHHHHHTTCE-----EEEEC----CCCHHHHHHHHHTTCCEEE-ESSHHH
T ss_pred HHHHHHHCCCE-----EEEEc----CCCHHHHHHHHHcCCCEEE-eCCHHH
Confidence 34455556654 44453 3578888888888888763 555554
No 179
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=24.88 E-value=1.5e+02 Score=22.87 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=42.5
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccc----hHHHHHHHcCCcee
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLV----PEVVLAKEAGLLYA 74 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStv----PEvilAre~Gm~~~ 74 (148)
.++|-.++.+-+.+.+++.|+.+. ++..+ +....|.+ .+...+.|.|=.... +....+++.|++++
T Consensus 81 ~~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV 153 (355)
T 3e3m_A 81 NNLHFAQTAQSLTDVLEQGGLQLL-----LGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQRASIPIV 153 (355)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCEEE-----EEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHHCCSCEE
T ss_pred CchHHHHHHHHHHHHHHHCCCEEE-----EEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEE
Confidence 467888899999999999988753 22222 23333433 445567776543321 22344677899998
Q ss_pred EE
Q psy17033 75 AV 76 (148)
Q Consensus 75 ~i 76 (148)
.+
T Consensus 154 ~i 155 (355)
T 3e3m_A 154 EI 155 (355)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 180
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=24.77 E-value=53 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
+.=.+.+...|++-++-+++.|+..+|+.|+.
T Consensus 49 ~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~ 80 (380)
T 3co8_A 49 LQVSKIARECGVDGLAVSVLDEGIAIRQAGID 80 (380)
T ss_dssp HHHHHHHGGGTCCEEEESSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCC
Confidence 33455678899999999999999999999986
No 181
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=24.74 E-value=38 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=40.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeecccchHHHHHHHcCCceeEEE
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is 77 (148)
.++|-.++.+-+.+.+++.|+.+. +.. .+ .....| ++.+...+.|.|=++.-++...+++.|++++.+.
T Consensus 71 ~~~~~~~~~~gi~~~~~~~g~~~~----~~~-~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~l~~~~iPvV~~~ 142 (330)
T 3ctp_A 71 SNPFFNQMASVIEEYAKNKGYTLF----LCN-TD--DDKEKEKTYLEVLQSHRVAGIIASRSQCEDEYANIDIPVVAFE 142 (330)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEE----EEE-CT--TCHHHHHHHHHHHHHTTCSEEEEETCCCSGGGTTCCSCEEEES
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEE----EEe-CC--CChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHhcCCCEEEEe
Confidence 467888899999999999998754 222 22 222233 3445556788543332221112346788887664
No 182
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=24.33 E-value=78 Score=20.57 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCc----eecce-EEEEeCCCC
Q psy17033 9 TRQIIIDSLKELGFK----FHDKG-TAVCIEGPR 37 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~----~~~~G-vY~~~~GP~ 37 (148)
.|..+...|+++|+. -...| |.+.++||.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~ 50 (88)
T 1ulr_A 17 YRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK 50 (88)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCH
Confidence 577888999999985 34488 999999984
No 183
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=24.04 E-value=59 Score=26.47 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
++=.+.+...|++-++-+++.|+..+|+.|+.
T Consensus 52 ~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~ 83 (391)
T 2vd8_A 52 VPVAXIALEAGATRLAVAFLDEALVLRRAGIT 83 (391)
T ss_dssp HHHHHHHHHTTCCEEEESSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCeEEeecHHHHHHHHhcCCC
Confidence 33455678899999999999999999999986
No 184
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=24.00 E-value=1.8e+02 Score=21.31 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=42.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHH---HHHHHHcCCCeeec-cc-chHH--HHHHH-cCCce
Q psy17033 2 EPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAE---SNLFRSWNAHLVNM-TL-VPEV--VLAKE-AGLLY 73 (148)
Q Consensus 2 ~~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE---~r~~r~~GaDvVGM-St-vPEv--ilAre-~Gm~~ 73 (148)
.++|-.++.+-+.+.+++.|+.+. + +..+ .....+ ++.+...+.|.|=. +. .++. -..++ .|+++
T Consensus 18 ~~~~~~~~~~gi~~~~~~~g~~~~----~-~~~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPv 90 (289)
T 1dbq_A 18 EAAYFAEIIEAVEKNCFQKGYTLI----L-GNAW--NNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPM 90 (289)
T ss_dssp TSHHHHHHHHHHHHHHHHHTCEEE----E-EECT--TCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCE
T ss_pred CChHHHHHHHHHHHHHHHcCCeEE----E-EcCC--CChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCE
Confidence 467888899999999999998654 2 2222 222333 44555678885433 22 2222 22334 69998
Q ss_pred eEEEe
Q psy17033 74 AAVAM 78 (148)
Q Consensus 74 ~~is~ 78 (148)
+.+..
T Consensus 91 V~~~~ 95 (289)
T 1dbq_A 91 VVMDW 95 (289)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 87654
No 185
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=23.78 E-value=2.6e+02 Score=21.85 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=46.0
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccc-hH-HH-H---HHHcCCcee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV-PE-VV-L---AKEAGLLYA 74 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStv-PE-vi-l---Are~Gm~~~ 74 (148)
+.|...+.+.+++.+++.|+.+...-.| -..-..| .+.++-++..++|+|=+... |+ +. + +++.|+...
T Consensus 174 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~-~~~~~d~--~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~ 248 (419)
T 3h5l_A 174 GIYSVNIANAIRDGAGEYGYDVSLFETV-AIPVSDW--GPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPTNSL 248 (419)
T ss_dssp SHHHHHHHHHHHHHGGGGTCEEEEEEEC-CSSCSCC--HHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCCSCE
T ss_pred cchhHHHHHHHHHHHHHcCCeEEEEecC-CCCCccH--HHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCCCce
Confidence 5678889999999999999887522222 1122333 55778889999999988754 54 22 2 456677544
No 186
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=23.63 E-value=73 Score=24.34 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=34.1
Q ss_pred HHHhCCceecceEEEEeCCCCCCCHHH-HHHHHHcCCCe-eecccchHHHHHHHcCCceeEE
Q psy17033 17 LKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHL-VNMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 17 a~~~gi~~~~~GvY~~~~GP~fET~AE-~r~~r~~GaDv-VGMStvPEvilAre~Gm~~~~i 76 (148)
+.+.|.... +..+..+.+-++..| ++.++..|..+ +..++..|+..|.++|..|+++
T Consensus 97 ~~~~Gad~V---~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (232)
T 3igs_A 97 LAQAGAAII---AVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLGADIIGT 155 (232)
T ss_dssp HHHHTCSEE---EEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTCSEEEC
T ss_pred HHHcCCCEE---EECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCCCEEEE
Confidence 455666532 222222233356555 45777777654 3567788888888888888864
No 187
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=23.63 E-value=67 Score=24.56 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHhCCceecceEEEEeCCCCCCCHHH-HHHHHHcCCCe-eecccchHHHHHHHcCCceeEE
Q psy17033 17 LKELGFKFHDKGTAVCIEGPRFSSRAE-SNLFRSWNAHL-VNMTLVPEVVLAKEAGLLYAAV 76 (148)
Q Consensus 17 a~~~gi~~~~~GvY~~~~GP~fET~AE-~r~~r~~GaDv-VGMStvPEvilAre~Gm~~~~i 76 (148)
+.+.|.... ...+..+++-++..| ++.++..|..+ +..++.-|+..|.++|..++++
T Consensus 97 ~~~aGad~I---~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Gad~Ig~ 155 (229)
T 3q58_A 97 LAQAGADII---AFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGT 155 (229)
T ss_dssp HHHHTCSEE---EEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred HHHcCCCEE---EECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCCCCEEEe
Confidence 455676533 222333334466665 56778877654 4567888898999999998864
No 188
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=23.59 E-value=81 Score=23.94 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHH
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVV 64 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvi 64 (148)
.+.+.+++.|+.++ +++ ..++++.+.+..+|+|.| +|-.|+..
T Consensus 202 ~~v~~~~~~G~~v~-----~wT----vn~~~~~~~l~~~GvdgI-iTD~P~~~ 244 (252)
T 2pz0_A 202 ELVEGCKKNGVKLF-----PWT----VDRKEDMERMIKAGVDGI-ITDDPETL 244 (252)
T ss_dssp HHHHHHHHTTCEEC-----CBC----CCSHHHHHHHHHHTCSEE-EESCHHHH
T ss_pred HHHHHHHHCCCEEE-----EEC----CCCHHHHHHHHHcCCCEE-EcCCHHHH
Confidence 34445556666543 332 357788888888888876 35666644
No 189
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A
Probab=23.59 E-value=2.7e+02 Score=21.88 Aligned_cols=83 Identities=13% Similarity=0.126 Sum_probs=46.7
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCceeEEEeeecc
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~~~~is~VTN~ 82 (148)
.+.++.|.+.+.+++++.|+++.. . .. +..-| ....|.. ...|++.+.++.-..+
T Consensus 267 ~~~~~~l~~~l~~~a~~~gi~~~~-~--~~---~~ggs--Da~~~~~-----------------~~~GiPtv~lg~~~~~ 321 (353)
T 1y0y_A 267 VICHPTIVRWLEELAKKHEIPYQL-E--IL---LGGGT--DAGAIHL-----------------TKAGVPTGALSVPARY 321 (353)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEE-E--EC---SSCCC--THHHHTT-----------------STTCCCEEEEEEEEBS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEE-e--ec---CCCCc--hHHHHHH-----------------hCCCCcEEEEcccccc
Confidence 357889999999999999887651 1 11 11111 1122211 2357888777766544
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17033 83 DCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120 (148)
Q Consensus 83 a~~~~~~~~v~~eeVl~~~~~~~~~~~~ll~~~i~~l~ 120 (148)
. ....+-++.+++.... +++..++..+.
T Consensus 322 ~--Hs~~E~v~~~dl~~~~--------~ll~~~l~~l~ 349 (353)
T 1y0y_A 322 I--HSNTEVVDERDVDATV--------ELMTKALENIH 349 (353)
T ss_dssp C--SSSCEEEEHHHHHHHH--------HHHHHHHHHGG
T ss_pred c--CCHHHhcCHHHHHHHH--------HHHHHHHHhhh
Confidence 3 3334667777765433 45555555543
No 190
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=23.56 E-value=2.2e+02 Score=20.93 Aligned_cols=15 Identities=0% Similarity=0.049 Sum_probs=7.7
Q ss_pred CHHHHHHHHHcCCCe
Q psy17033 40 SRAESNLFRSWNAHL 54 (148)
Q Consensus 40 T~AE~r~~r~~GaDv 54 (148)
|+.|.+.+...|+|.
T Consensus 121 T~~~~~~~~~~g~d~ 135 (218)
T 3jr2_A 121 TMQDAKAWVDLGITQ 135 (218)
T ss_dssp CHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHcCccc
Confidence 554555555555553
No 191
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=23.33 E-value=52 Score=25.19 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHcCCCeeecccchH
Q psy17033 39 SSRAESNLFRSWNAHLVNMTLVPE 62 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvVGMStvPE 62 (148)
.++++.+.+..+|+|-| +|-.|+
T Consensus 245 n~~~~~~~l~~~GvdgI-iTD~P~ 267 (272)
T 3ch0_A 245 NTKEEIETLISLGVDGI-ITDYPD 267 (272)
T ss_dssp CSHHHHHHHHHHTCSEE-EESCGG
T ss_pred CCHHHHHHHHHcCCCEE-EeCCHH
Confidence 45677777777777665 444444
No 192
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=23.32 E-value=51 Score=25.94 Aligned_cols=30 Identities=10% Similarity=0.043 Sum_probs=20.9
Q ss_pred eCCCCCCCHHHHHHHHHcCCCeeecccchHHH
Q psy17033 33 IEGPRFSSRAESNLFRSWNAHLVNMTLVPEVV 64 (148)
Q Consensus 33 ~~GP~fET~AE~r~~r~~GaDvVGMStvPEvi 64 (148)
-.|+| |..+...|-.+||+-||.|...+++
T Consensus 206 sGGIr--t~~da~~~i~aGA~riGtS~~~~I~ 235 (239)
T 3ngj_A 206 AGGIR--TFDDAMKMINNGASRIGASAGIAIL 235 (239)
T ss_dssp ESSCC--SHHHHHHHHHTTEEEEEESCHHHHH
T ss_pred eCCCC--CHHHHHHHHHhcccceecccHHHHH
Confidence 35566 6677777777788888887776654
No 193
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=23.16 E-value=38 Score=24.07 Aligned_cols=46 Identities=11% Similarity=-0.106 Sum_probs=31.9
Q ss_pred ceEEEEeCCCC--CCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 27 KGTAVCIEGPR--FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 27 ~GvY~~~~GP~--fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
+-+.+.++.+. -++..=.+..|..|+.+|++|..++-.+|+.+...
T Consensus 88 ~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~ 135 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHV 135 (187)
T ss_dssp TEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEE
Confidence 34455544433 34444456777889999999999999999987643
No 194
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.14 E-value=72 Score=23.56 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=41.1
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeec-ccchH-----HHHHHHcCCce
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNM-TLVPE-----VVLAKEAGLLY 73 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGM-StvPE-----vilAre~Gm~~ 73 (148)
++|-..+.+-+.+.+++.|+.+. ++..........|.+ .+...+.|.|=. +.-++ +..+++.|+++
T Consensus 19 ~~~~~~~~~gi~~~a~~~g~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~iPv 93 (289)
T 3brs_A 19 SDFWSVLVEGAQMAAKEYEIKLE-----FMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKL 93 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEE-----ECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEE
T ss_pred chHHHHHHHHHHHHHHHcCCEEE-----EecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCcE
Confidence 67888899999999999887643 111111344334433 444568885443 32222 22355679998
Q ss_pred eEEE
Q psy17033 74 AAVA 77 (148)
Q Consensus 74 ~~is 77 (148)
+.+.
T Consensus 94 V~~~ 97 (289)
T 3brs_A 94 IVID 97 (289)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7764
No 195
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.87 E-value=1.1e+02 Score=21.80 Aligned_cols=21 Identities=0% Similarity=0.060 Sum_probs=13.5
Q ss_pred CCHHHH-HHHHHcCCCeeeccc
Q psy17033 39 SSRAES-NLFRSWNAHLVNMTL 59 (148)
Q Consensus 39 ET~AE~-r~~r~~GaDvVGMSt 59 (148)
-++.|+ +..+..++|+||+|.
T Consensus 56 ~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 56 QTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEE
T ss_pred CCHHHHHHHHHhcCCCEEEEEe
Confidence 355443 466677777777776
No 196
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=22.79 E-value=2.5e+02 Score=21.20 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=45.2
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchH-HH----HHHHcCCceeEE
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPE-VV----LAKEAGLLYAAV 76 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPE-vi----lAre~Gm~~~~i 76 (148)
..|...+.+.+++.+++.|+.+.... + +......-.+..+.++..++|+|=+...++ +. .+++.|+++--+
T Consensus 148 ~~~~~~~~~~~~~~l~~~g~~v~~~~-~--~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~~ 223 (356)
T 3ipc_A 148 TPYGQGLADETKKAANAAGVTEVMYE-G--VNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLV 223 (356)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCSEEE-E--CCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEE
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEEE-e--eCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCcEE
Confidence 35667778888889999998865222 1 122223334567778888999998554433 22 367889886544
No 197
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=22.79 E-value=2.2e+02 Score=21.12 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=15.0
Q ss_pred cCHHHHHHHHHHHHHhCCcee
Q psy17033 5 FDNSTRQIIIDSLKELGFKFH 25 (148)
Q Consensus 5 Yd~~Lr~~~~~~a~~~gi~~~ 25 (148)
++++-.+.+++.+++.|+.+.
T Consensus 48 ~~~~~~~~~~~~l~~~gl~~~ 68 (290)
T 3tva_A 48 RTREHAQAFRAKCDAAGIQVT 68 (290)
T ss_dssp CSHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEE
Confidence 456667777777888887764
No 198
>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A
Probab=22.73 E-value=72 Score=22.99 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=36.8
Q ss_pred cceEEEEeCCCCCCCHHH-HHHHHHcCCCeeecccchH--HHHHHHcCCceeEEE
Q psy17033 26 DKGTAVCIEGPRFSSRAE-SNLFRSWNAHLVNMTLVPE--VVLAKEAGLLYAAVA 77 (148)
Q Consensus 26 ~~GvY~~~~GP~fET~AE-~r~~r~~GaDvVGMStvPE--vilAre~Gm~~~~is 77 (148)
..+-|+++++|.=+|.++ .++++..|...|=+-+-++ .......|+.|..+.
T Consensus 35 ~~~r~I~tq~P~~~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i~~~~~p 89 (189)
T 3rz2_A 35 KNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP 89 (189)
T ss_dssp TTEEEEEECCCCTTTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSCEEEECC
T ss_pred CCCeEEEeCCCCcccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCcEEEEec
Confidence 379999999999999754 5799999987665533221 234455688887665
No 199
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=22.70 E-value=2.2e+02 Score=23.49 Aligned_cols=35 Identities=11% Similarity=-0.068 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 38 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 38 fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
+-+++=.+.+...|++-++-+++.|+..+++.|+.
T Consensus 81 h~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~ 115 (426)
T 3gwq_A 81 TMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS 115 (426)
T ss_dssp TCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCC
Confidence 56676668888899999999999999999999975
No 200
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=22.57 E-value=54 Score=27.31 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=30.3
Q ss_pred HHHHHHHHHH-hCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCe
Q psy17033 10 RQIIIDSLKE-LGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHL 54 (148)
Q Consensus 10 r~~~~~~a~~-~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDv 54 (148)
...++..|++ .|+.+...|+|-...|=..+...|-..|+.+|-+-
T Consensus 328 nr~lR~~A~~~kG~kLne~GL~~~~~g~~i~~~sE~~If~~LGL~y 373 (381)
T 1jms_A 328 ERDLRRYATHERKMMLDNHALYDRTKRVFLEAESEEEIFAHLGLDY 373 (381)
T ss_dssp HHHHHHHHHHHHCEEECSSCEEETTTTEECCCSSHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhcCCCcchhhcccCCCCccCCCCCHHHHHHHcCCCC
Confidence 3444556664 89999888999544343466667888888887553
No 201
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=22.44 E-value=1.7e+02 Score=21.28 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=8.2
Q ss_pred CHHHHHHHHHcCCCeee
Q psy17033 40 SRAESNLFRSWNAHLVN 56 (148)
Q Consensus 40 T~AE~r~~r~~GaDvVG 56 (148)
|+.|.+.+...|+|.|+
T Consensus 128 t~~e~~~~~~~G~d~i~ 144 (223)
T 1y0e_A 128 TVEEAKNAARLGFDYIG 144 (223)
T ss_dssp SHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 44444444445555443
No 202
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=22.31 E-value=1.1e+02 Score=24.35 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHH-----HHHHcCCce
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVV-----LAKEAGLLY 73 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvi-----lAre~Gm~~ 73 (148)
+.|...+.+.+.+.+++.|+.+...-.| . +.| .+.++.++..++|+|=+...++-. -|+++||.-
T Consensus 164 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~---~-~d~--~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~ 233 (433)
T 4f11_A 164 VQRFSEVRNDLTGVLYGEDIEISDTESF---S-NDP--CTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYG 233 (433)
T ss_dssp SHHHHHHHHHHHHHSSSSSCEEEEEEEE---S-SCC--HHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHHHHHHHHHHcCceEEEEecc---C-cCH--HHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCC
Confidence 4566777788888888888876522222 1 455 467888999999999877766532 377888853
No 203
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=22.31 E-value=2.6e+02 Score=21.27 Aligned_cols=69 Identities=7% Similarity=-0.000 Sum_probs=45.0
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchH-HH----HHHHcCCcee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPE-VV----LAKEAGLLYA 74 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPE-vi----lAre~Gm~~~ 74 (148)
..|.....+.+++.+++.|+++...- +.-.... .-.+..+.++..++|+|=....++ +. .++++|+++-
T Consensus 151 ~~~g~~~~~~~~~~~~~~G~~v~~~~-~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~ 224 (364)
T 3lop_A 151 DALGKEAITGVERTLKAHALAITAMA-SYPRNTA--NVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ 224 (364)
T ss_dssp THHHHHHHHHHHHHHHTTTCCCSEEE-EECTTSC--CCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred chhhHHHHHHHHHHHHHcCCcEEEEE-EecCCCc--cHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe
Confidence 35667778888889999998875222 2222223 335567778888999987755443 32 3678888765
No 204
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=22.26 E-value=3.3e+02 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHcCCCee--ec----c---------c------chHHH-HHHHcCCceeEEEeeecc
Q psy17033 39 SSRAESNLFRSWNAHLV--NM----T---------L------VPEVV-LAKEAGLLYAAVAMATDY 82 (148)
Q Consensus 39 ET~AE~r~~r~~GaDvV--GM----S---------t------vPEvi-lAre~Gm~~~~is~VTN~ 82 (148)
.|+.+.+.+...|+|.| |+ . . ++++. ++++.++++.+-.-|.+.
T Consensus 305 ~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~ 370 (514)
T 1jcn_A 305 VTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTV 370 (514)
T ss_dssp CSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSH
T ss_pred chHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCH
Confidence 78999999999999988 32 1 1 12222 344558888887777663
No 205
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=22.23 E-value=2e+02 Score=21.91 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=45.6
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccc-hHH----HHHHHcCCcee
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV-PEV----VLAKEAGLLYA 74 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStv-PEv----ilAre~Gm~~~ 74 (148)
..|..+..+.+++..++.|+++.... +.-...+.| .+..+.++..++|+|=...- .++ ..+++.|++.-
T Consensus 169 ~~~~~~~~~~~~~~l~~~g~~v~~~~-~~~~~~~d~--~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~ 242 (386)
T 3sg0_A 169 DAYGEGYYKVLAAAAPKLGFELTTHE-VYARSDASV--TGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA 242 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEECCCE-EECTTCSCC--HHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE
T ss_pred chHHHHHHHHHHHHHHHcCCEEEEEE-eeCCCCCcH--HHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc
Confidence 45677788888999999999876332 222233333 45677788889999865554 222 34688899854
No 206
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=22.22 E-value=36 Score=27.23 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=35.7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCC
Q psy17033 29 TAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71 (148)
Q Consensus 29 vY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm 71 (148)
+.+..+|=+=+|.+=.+..|..|+.+|+.|..|+-.+|+++..
T Consensus 79 I~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~ 121 (329)
T 3eua_A 79 ILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQY 121 (329)
T ss_dssp EEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCE
Confidence 3445567677777778888899999999999999999999864
No 207
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=22.05 E-value=1.2e+02 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHH-HHHcCCCeeecccchHHH
Q psy17033 11 QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNL-FRSWNAHLVNMTLVPEVV 64 (148)
Q Consensus 11 ~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~-~r~~GaDvVGMStvPEvi 64 (148)
..+.+.+++.|+.+ |+++ ..++++.+. +..+|+|.|- |-.|+..
T Consensus 184 ~~~v~~~~~~G~~v-----~~wT----vn~~~~~~~~l~~~GvdgIi-TD~p~~~ 228 (248)
T 1zcc_A 184 PGIIEASRKAGLEI-----MVYY----GGDDMAVHREIATSDVDYIN-LDRPDLF 228 (248)
T ss_dssp HHHHHHHHHHTCEE-----EEEC----CCCCHHHHHHHHHSSCSEEE-ESCHHHH
T ss_pred HHHHHHHHHCCCEE-----EEEC----CCCHHHHHHHHHHcCCCEEE-ECCHHHH
Confidence 33445556666653 3333 245677777 7777777653 5555543
No 208
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=22.01 E-value=79 Score=24.17 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHH-cCCCeeecccc------------hH---------HHHHHHcCCcee
Q psy17033 35 GPRFSSRAESNLFRS-WNAHLVNMTLV------------PE---------VVLAKEAGLLYA 74 (148)
Q Consensus 35 GP~fET~AE~r~~r~-~GaDvVGMStv------------PE---------vilAre~Gm~~~ 74 (148)
+|+|-|.+.++.+++ +|..+|=.... || +-.|.+.||.++
T Consensus 35 ~~~~~~~~di~~~~~~~G~N~vRi~~~~~~~~~~~~~~~p~~~~~~ld~~v~~a~~~Gi~vi 96 (293)
T 1tvn_A 35 AEKFYTAETVAKAKTEFNATLIRAAIGHGTSTGGSLNFDWEGNMSRLDTVVNAAIAEDMYVI 96 (293)
T ss_dssp CGGGCSHHHHHHHHHHHCCSEEEEEEECCTTSTTSTTTCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEEeccccCCCCCccccChHHHHHHHHHHHHHHHHCCCEEE
Confidence 367888999999995 99998744322 35 567999999875
No 209
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=22.00 E-value=94 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHcCCCeeecccch-HHH--------HHHHc-CCceeEEEee
Q psy17033 38 FSSRAESNLFRSWNAHLVNMTLVP-EVV--------LAKEA-GLLYAAVAMA 79 (148)
Q Consensus 38 fET~AE~r~~r~~GaDvVGMStvP-Evi--------lAre~-Gm~~~~is~V 79 (148)
-.|+.|+.....+|+|.|+. .| +.. +..-+ +++++++.-|
T Consensus 126 ~~t~~e~~~A~~~Gad~vk~--FPa~~~~G~~~lk~i~~~~~~ipvvaiGGI 175 (225)
T 1mxs_A 126 ISTPSEIMMGYALGYRRFKL--FPAEISGGVAAIKAFGGPFGDIRFCPTGGV 175 (225)
T ss_dssp ECSHHHHHHHHTTTCCEEEE--TTHHHHTHHHHHHHHHTTTTTCEEEEBSSC
T ss_pred eCCHHHHHHHHHCCCCEEEE--ccCccccCHHHHHHHHhhCCCCeEEEECCC
Confidence 57899999999999999998 65 221 11223 5666666655
No 210
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=21.89 E-value=70 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=28.4
Q ss_pred CHHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 40 SRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 40 T~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
.++=.+.+...|++-++-+++.|+..+++.|+.
T Consensus 50 ~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~ 82 (384)
T 1xfc_A 50 ATRVAQTALGAGAAELGVATVDEALALRADGIT 82 (384)
T ss_dssp HHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCC
Confidence 455556778899999999999999999999986
No 211
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=21.86 E-value=66 Score=26.09 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
++=.+.+...|++-++-+++.|+..+++.|+.
T Consensus 47 ~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~ 78 (386)
T 1vfs_A 47 VPCARAAQEAGAAWLGTATPEEALELRAAGIQ 78 (386)
T ss_dssp HHHHHHHHHHTCCEEEESSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCC
Confidence 33455677899999999999999999999986
No 212
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.85 E-value=2.3e+02 Score=21.13 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=44.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCC---ceecceEEEEeCCCCCCCHHHHH---HHHHcCCCeeecccchHH--HHHHHcCCc
Q psy17033 1 MEPAFDNSTRQIIIDSLKELGF---KFHDKGTAVCIEGPRFSSRAESN---LFRSWNAHLVNMTLVPEV--VLAKEAGLL 72 (148)
Q Consensus 1 m~~~Yd~~Lr~~~~~~a~~~gi---~~~~~GvY~~~~GP~fET~AE~r---~~r~~GaDvVGMStvPEv--ilAre~Gm~ 72 (148)
+++||-.++.+-+.+.+++.|+ .+. +.++-. ......|.+ .|...+.|.|=.+.-+.. ......+++
T Consensus 11 ~~~p~~~~i~~gi~~~l~~~gy~g~~v~---l~~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~~~~~iP 85 (295)
T 3lft_A 11 VSHPSLDLIYKGIQDGLAEEGYKDDQVK---IDFMNS--EGDQSKVATMSKQLVANGNDLVVGIATPAAQGLASATKDLP 85 (295)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCGGGEE---EEEEEC--TTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHHHCSSSC
T ss_pred cCChhHHHHHHHHHHHHHHcCCCCCceE---EEEecC--CCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHcCCCCC
Confidence 3678889999999999999998 432 222222 233333443 455668887655443322 222346888
Q ss_pred eeEEEe
Q psy17033 73 YAAVAM 78 (148)
Q Consensus 73 ~~~is~ 78 (148)
++.+..
T Consensus 86 vV~~~~ 91 (295)
T 3lft_A 86 VIMAAI 91 (295)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 887653
No 213
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=21.85 E-value=1.2e+02 Score=24.17 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 38 FSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 38 fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
..++.=.+.+...|++-++-+++.|+..+++.|+.
T Consensus 47 ~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~ 81 (376)
T 3anu_A 47 HKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFD 81 (376)
T ss_dssp TCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCE
T ss_pred hcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCC
Confidence 67777778888889999999999999999999987
No 214
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=21.78 E-value=66 Score=26.25 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
++=.+.+...|++-++-+++.|+..+|+.|+.
T Consensus 48 ~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~ 79 (388)
T 1bd0_A 48 VQVARTALEAGASRLAVAFLDEALALREKGIE 79 (388)
T ss_dssp HHHHHHHHHHTCCEEEESSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcC
Confidence 44456778899999999999999999999986
No 215
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=21.77 E-value=2.8e+02 Score=21.38 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=44.2
Q ss_pred cccCHHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccc-hHHH----HHHHcCCceeEE
Q psy17033 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV-PEVV----LAKEAGLLYAAV 76 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStv-PEvi----lAre~Gm~~~~i 76 (148)
..|..+..+.+++.+++.|+++..... +......-.+..+.++..++|+|=+... +++. .++++|+++--+
T Consensus 153 ~~~g~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~~~ 228 (392)
T 3lkb_A 153 SPFGRAPVEDARKAARELGLQIVDVQE---VGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMRHL 228 (392)
T ss_dssp SHHHHTTHHHHHHHHHHHTCEEEEEEE---CCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred CchhhhHHHHHHHHHHHcCCeEEEEEe---eCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCceEE
Confidence 345666777888888999988752221 2222223345677788889999976433 3332 367888876443
No 216
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=21.66 E-value=72 Score=25.46 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCeeecccchHHHHHHHcCCc
Q psy17033 41 RAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72 (148)
Q Consensus 41 ~AE~r~~r~~GaDvVGMStvPEvilAre~Gm~ 72 (148)
++=.+.+...|++-++-+++.|+..+++.|+.
T Consensus 43 ~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~ 74 (361)
T 2dy3_A 43 EKVAPVIAAHGADAFGVATLAEAMQLRDIGIS 74 (361)
T ss_dssp HHHHHHHHHTTCCEEEESSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCC
Confidence 44456677889999999999999999999886
No 217
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=21.63 E-value=98 Score=23.34 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHcCCCeeeccc-----chHHH--HHHHc-CCceeEEEeee
Q psy17033 38 FSSRAESNLFRSWNAHLVNMTL-----VPEVV--LAKEA-GLLYAAVAMAT 80 (148)
Q Consensus 38 fET~AE~r~~r~~GaDvVGMSt-----vPEvi--lAre~-Gm~~~~is~VT 80 (148)
-.|+.|+.....+|+|.|+.=- -|+.+ +..-+ +++++++.-|+
T Consensus 116 ~~t~~e~~~A~~~Gad~v~~Fpa~~~gG~~~lk~i~~~~~~ipvvaiGGI~ 166 (214)
T 1wbh_A 116 ISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGIS 166 (214)
T ss_dssp ESSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCC
T ss_pred cCCHHHHHHHHHCCCCEEEEecCccccCHHHHHHHhhhCCCCeEEEECCCC
Confidence 5689999999999999998721 13322 22334 67777776664
No 218
>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}
Probab=21.44 E-value=52 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=34.7
Q ss_pred EEEEeCCCCCCC-HHHHHHHHHcCCCeeecccch--HHHHHHHcCCceeEEEe
Q psy17033 29 TAVCIEGPRFSS-RAESNLFRSWNAHLVNMTLVP--EVVLAKEAGLLYAAVAM 78 (148)
Q Consensus 29 vY~~~~GP~fET-~AE~r~~r~~GaDvVGMStvP--EvilAre~Gm~~~~is~ 78 (148)
-|++++||.-.| ....++++..|...|=|-+-+ +.......|+.|..+.+
T Consensus 24 ~~i~tq~P~~~t~~~~~~~l~~~gi~~Iv~l~~~~~~~~~~~~~~i~~~~~p~ 76 (167)
T 3s4o_A 24 HFLILDAPSPSNLPTYIKELQHRGVRHLVRVCGPTYDATLVKSRGIDVHSWPF 76 (167)
T ss_dssp EEEEECCCCGGGHHHHHHHHHTTTEEEEEECSCCCSCTHHHHTTTCEEEECCC
T ss_pred eEEEeCCCchhhHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCeEEEecc
Confidence 699999999999 455689999998766543322 12234456888876553
No 219
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=21.44 E-value=77 Score=20.68 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCc----eecce-EEEEeCCCC
Q psy17033 9 TRQIIIDSLKELGFK----FHDKG-TAVCIEGPR 37 (148)
Q Consensus 9 Lr~~~~~~a~~~gi~----~~~~G-vY~~~~GP~ 37 (148)
.|..+...|+++|+. -...| |.+.++||.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~ 50 (91)
T 2fhm_A 17 FRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPE 50 (91)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECH
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCH
Confidence 577888999999985 34478 999999974
No 220
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=21.39 E-value=99 Score=24.17 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCCCHHHH----HHHHHcCCCeeeccc
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES----NLFRSWNAHLVNMTL 59 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~----r~~r~~GaDvVGMSt 59 (148)
...+.+++.|+.+. -++-+ |-..+|..+. ++++.+|.+.|+...
T Consensus 182 ~~i~~~~~~Gi~v~-~~~i~---G~p~et~e~~~~~~~~l~~l~~~~i~i~~ 229 (348)
T 3iix_A 182 NCLLTLKELGYETG-AGSMV---GLPGQTIDDLVDDLLFLKEHDFDMVGIGP 229 (348)
T ss_dssp HHHHHHHHTTCEEE-ECBEE---SCTTCCHHHHHHHHHHHHHHTCSEECCEE
T ss_pred HHHHHHHHhCCeec-cceEE---eCCCCCHHHHHHHHHHHHhcCCCEEeeee
Confidence 34456777888654 23223 3323555443 366677777666543
No 221
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=21.26 E-value=36 Score=27.49 Aligned_cols=42 Identities=21% Similarity=-0.030 Sum_probs=35.4
Q ss_pred EEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCC
Q psy17033 30 AVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71 (148)
Q Consensus 30 Y~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm 71 (148)
.+..+|=+=||.+=.+..|..|+.+|+.|..|+-.+|+++..
T Consensus 97 ~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~ 138 (344)
T 3fj1_A 97 AVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAH 138 (344)
T ss_dssp EEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSE
T ss_pred EEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCE
Confidence 445567777778888888999999999999999999999853
No 222
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=21.23 E-value=3.3e+02 Score=22.10 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc---------------chHH------HH
Q psy17033 7 NSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL---------------VPEV------VL 65 (148)
Q Consensus 7 ~~Lr~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt---------------vPEv------il 65 (148)
..+.+.+.++.+..++++.-.+ -.|+.+.+.+...|+|.|..+. .|-. .-
T Consensus 131 ~~~~~~i~~i~~~~~~~Vivg~---------v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~ 201 (361)
T 3khj_A 131 LNIIRTLKEIKSKMNIDVIVGN---------VVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSS 201 (361)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEE---------ECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEcc---------CCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHH
Confidence 3455566665555566544111 1688999999999999886520 3322 11
Q ss_pred -HHHcCCceeEEEeeec
Q psy17033 66 -AKEAGLLYAAVAMATD 81 (148)
Q Consensus 66 -Are~Gm~~~~is~VTN 81 (148)
+++.++++.+-.-|.|
T Consensus 202 ~~~~~~iPVIA~GGI~~ 218 (361)
T 3khj_A 202 VASKFGIPIIADGGIRY 218 (361)
T ss_dssp HHHHHTCCEEEESCCCS
T ss_pred HHhhcCCeEEEECCCCC
Confidence 3445888887766654
No 223
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=21.18 E-value=2.3e+02 Score=23.99 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=44.7
Q ss_pred cccCHHHHHHHHHHHHHh-CCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecc---------------------cc
Q psy17033 3 PAFDNSTRQIIIDSLKEL-GFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMT---------------------LV 60 (148)
Q Consensus 3 ~~Yd~~Lr~~~~~~a~~~-gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMS---------------------tv 60 (148)
.++.+.+.+.+.++.+.. ++++. -| .--|+.+.+.+...|+|.|... .+
T Consensus 251 ~g~~~~~~~~v~~i~~~~p~~~Vi-~g--------~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~~l 321 (490)
T 4avf_A 251 HGHSKGVIERVRWVKQTFPDVQVI-GG--------NIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQISAI 321 (490)
T ss_dssp CCSBHHHHHHHHHHHHHCTTSEEE-EE--------EECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHHHH
T ss_pred CCcchhHHHHHHHHHHHCCCceEE-Ee--------eeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHHHH
Confidence 455666667777776665 44443 12 2358889999999999998641 12
Q ss_pred hHHHHH-HHcCCceeEEEeeecc
Q psy17033 61 PEVVLA-KEAGLLYAAVAMATDY 82 (148)
Q Consensus 61 PEvilA-re~Gm~~~~is~VTN~ 82 (148)
+|+.-+ ++.++++++-.-|.+.
T Consensus 322 ~~v~~~~~~~~iPVIa~GGI~~~ 344 (490)
T 4avf_A 322 ANVAAALEGTGVPLIADGGIRFS 344 (490)
T ss_dssp HHHHHHHTTTTCCEEEESCCCSH
T ss_pred HHHHHHhccCCCcEEEeCCCCCH
Confidence 444432 2458888886666543
No 224
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.18 E-value=39 Score=23.89 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=31.9
Q ss_pred ceEEEEeC--CCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcCC
Q psy17033 27 KGTAVCIE--GPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71 (148)
Q Consensus 27 ~GvY~~~~--GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~Gm 71 (148)
+-+.+.++ |-.-++..=.+..|..|+.+|+.|.-+.-.+|+.+..
T Consensus 97 ~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~ 143 (183)
T 2xhz_A 97 QDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADV 143 (183)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCE
Confidence 34455544 4344455556677889999999999999999988763
No 225
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=21.16 E-value=2.2e+02 Score=20.05 Aligned_cols=64 Identities=8% Similarity=-0.100 Sum_probs=37.6
Q ss_pred HHHHHHHhCCceecceEEEEeCCC-CCCCHHHH-HHHHHcCCC-----eeecccchHHHHHHHcCCceeEEE
Q psy17033 13 IIDSLKELGFKFHDKGTAVCIEGP-RFSSRAES-NLFRSWNAH-----LVNMTLVPEVVLAKEAGLLYAAVA 77 (148)
Q Consensus 13 ~~~~a~~~gi~~~~~GvY~~~~GP-~fET~AE~-r~~r~~GaD-----vVGMStvPEvilAre~Gm~~~~is 77 (148)
+....+.+|+.-...+++..-..+ .-..|.=. +.++.+|.+ +||=+ ..-+..|+.+|+.++.+.
T Consensus 135 ~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~iGD~-~~Di~~a~~aG~~~~~v~ 205 (240)
T 2no4_A 135 LQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSN-AWDLGGAGKFGFNTVRIN 205 (240)
T ss_dssp HHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEEEESC-HHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEEEeCC-HHHHHHHHHCCCEEEEEC
Confidence 334444556643335555543322 22233222 356778876 68844 577889999999988764
No 226
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=20.63 E-value=1.8e+02 Score=18.76 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHH
Q psy17033 13 IIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKE 68 (148)
Q Consensus 13 ~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre 68 (148)
+...+++.|.. -+++...+|.+ .+.++.+|+|.| ..|+...|..
T Consensus 88 ~~~~~~~~~~~----~ii~~~~~~~~-----~~~l~~~g~~~v---i~p~~~~~~~ 131 (144)
T 2hmt_A 88 TTLLLKELDIP----NIWVKAQNYYH-----HKVLEKIGADRI---IHPEKDMGVK 131 (144)
T ss_dssp HHHHHHHTTCS----EEEEECCSHHH-----HHHHHHHTCSEE---ECHHHHHHHH
T ss_pred HHHHHHHcCCC----eEEEEeCCHHH-----HHHHHHcCCCEE---ECccHHHHHH
Confidence 44444544431 24444444433 234555665533 2355554444
No 227
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=20.58 E-value=97 Score=25.47 Aligned_cols=67 Identities=13% Similarity=-0.041 Sum_probs=42.1
Q ss_pred cCHHHH-HHHHHHHHHhCCceecceEEEEeCCCCCCCHHHHHHHHHcCCCeeeccc---------------chHHHHHHH
Q psy17033 5 FDNSTR-QIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL---------------VPEVVLAKE 68 (148)
Q Consensus 5 Yd~~Lr-~~~~~~a~~~gi~~~~~GvY~~~~GP~fET~AE~r~~r~~GaDvVGMSt---------------vPEvilAre 68 (148)
|||++. +.+..+.+..++++.-+|+ -|+.+.+.+...|+|.|-.+. ++|+ +..
T Consensus 208 ~~p~~~~~~i~~i~~~~~~Pv~vkgv---------~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v--~~~ 276 (380)
T 1p4c_A 208 MDASFNWEALRWLRDLWPHKLLVKGL---------LSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQS--VAK 276 (380)
T ss_dssp CCTTCCHHHHHHHHHHCCSEEEEEEE---------CCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHH--HHH
T ss_pred cCccccHHHHHHHHHhcCCCEEEEec---------CcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHH--HHH
Confidence 344433 3555566667777653453 689999999999999985533 2443 344
Q ss_pred cCCceeEEEeeecc
Q psy17033 69 AGLLYAAVAMATDY 82 (148)
Q Consensus 69 ~Gm~~~~is~VTN~ 82 (148)
.+.++.+-.-|.+.
T Consensus 277 ~~~pVia~GGI~~~ 290 (380)
T 1p4c_A 277 TGKPVLIDSGFRRG 290 (380)
T ss_dssp HCSCEEECSSCCSH
T ss_pred cCCeEEEECCCCCH
Confidence 56666665555543
No 228
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=20.47 E-value=35 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=35.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHHcCCCeeecccchHHHHHHHcC
Q psy17033 29 TAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAG 70 (148)
Q Consensus 29 vY~~~~GP~fET~AE~r~~r~~GaDvVGMStvPEvilAre~G 70 (148)
+.+..+|=+-||.+=.+..|..|+.+|+.|..|+-.+|+.+.
T Consensus 94 I~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad 135 (347)
T 3fkj_A 94 ILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSD 135 (347)
T ss_dssp EEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcC
Confidence 344456767777777888889999999999999999999986
No 229
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=20.41 E-value=2.5e+02 Score=21.62 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCceecceEEEEeCCCCCC---CHHHH----HHHHHcCCCeeecccch---HHHH--HHHcCC-ceeEEEe
Q psy17033 12 IIIDSLKELGFKFHDKGTAVCIEGPRFS---SRAES----NLFRSWNAHLVNMTLVP---EVVL--AKEAGL-LYAAVAM 78 (148)
Q Consensus 12 ~~~~~a~~~gi~~~~~GvY~~~~GP~fE---T~AE~----r~~r~~GaDvVGMStvP---Evil--Are~Gm-~~~~is~ 78 (148)
.+.+.+++.|+++.-+ ....|+.+. |+.++ +.....|+|.|+.++ | |-+- .+.++. ++.++.-
T Consensus 129 ~v~~~~~~~~~~vIi~---~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~-~~~~e~~~~~~~~~~~~pV~asGG 204 (263)
T 1w8s_A 129 RIKRDAVKFDLPLVVE---SFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY-TGDPKTFSWAVKVAGKVPVLMSGG 204 (263)
T ss_dssp HHHHHHHHHTCCEEEE---ECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC-CSSHHHHHHHHHHTTTSCEEEECC
T ss_pred HHHHHHHHcCCeEEEE---eeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC-CCCHHHHHHHHHhCCCCeEEEEeC
Confidence 3444566678876522 334677664 55555 445679999999985 4 4322 223465 7776665
Q ss_pred ee
Q psy17033 79 AT 80 (148)
Q Consensus 79 VT 80 (148)
|.
T Consensus 205 i~ 206 (263)
T 1w8s_A 205 PK 206 (263)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 230
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=20.20 E-value=2e+02 Score=19.05 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhC----C-ceecceEEEEeCCCCCCCHHHHHHH-HHcCCCeeecccchHH--HHHHHcCCceeE
Q psy17033 6 DNSTRQIIIDSLKELG----F-KFHDKGTAVCIEGPRFSSRAESNLF-RSWNAHLVNMTLVPEV--VLAKEAGLLYAA 75 (148)
Q Consensus 6 d~~Lr~~~~~~a~~~g----i-~~~~~GvY~~~~GP~fET~AE~r~~-r~~GaDvVGMStvPEv--ilAre~Gm~~~~ 75 (148)
|+.....+.+..++.+ . .+. ++.....|..+|+++.+.| +..|.+....+.-++. .+++..|+.+.-
T Consensus 39 C~~~~~~l~~l~~~~~~~~~~~~~~---vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p 113 (164)
T 2ggt_A 39 CPEELEKMIQVVDEIDSITTLPDLT---PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSP 113 (164)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCCEE---EEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTCCEEE
T ss_pred hHHHHHHHHHHHHHHhhccCCCcEE---EEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEe
Confidence 6666666666665542 1 222 3344456888899988755 4577776655443333 488999998766
Done!