RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17033
         (148 letters)



>gnl|CDD|233535 TIGR01694, MTAP, 5'-deoxy-5'-methylthioadenosine phosphorylase.
           This model represents the methylthioadenosine
           phosphorylase found in metazoa, cyanobacteria and a
           limited number of archaea such as Sulfolobus, Aeropyrum,
           Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme
           is responsible for the first step in the methionine
           salvage pathway after the transfer of the amino acid
           moiety from S-adenosylmethionine. The enzyme from human
           is well-characterized including a crystal structure. A
           misleading characterization is found for a Sulfolobus
           solfataricus enzyme which is called a MTAP. In fact, as
           uncovered by the genome sequence of S. solfataricus,
           there are at least two nucleotide phosphorylases and the
           one found in the MTAP clade is not the one annotated as
           such. The sequence in this clade has not been isolated
           but is likely to be the authentic SsMTAP as it displays
           all of the conserved active site residues found in the
           human enzyme. This explains the finding that the
           characterized enzyme has greater efficiency towards the
           purines inosine, guanosine and adenosine over MTA. In
           fact, this mis-naming of this enzyme has been carried
           forward to several publications including a crystal
           stucture. In between the trusted and noise cutoffs are:
           1) several archaeal sequences which appear to contain
           several residues characteristic of phosphorylases which
           act on guanosine or inosine (according to the crystal
           structure of MTAP and alignments). In any case, these
           residues are not conserved. 2) sequences from
           Mycobacterium tuberculosis and Streptomyces coelicolor
           which have better, although not perfect retention of the
           active site residues, but considering the general
           observation that bacteria utilize the MTA/SAH
           nucleotidase enzyme and a kinase to do this reaction,
           these have been excluded pending stronger evidence of
           their function, and 3) a sequence from Drosophila which
           appears to be a recent divergence (long branch in
           neighbor-joining trees) and lacks some of the conserved
           active site residues [Central intermediary metabolism,
           Other, Purines, pyrimidines, nucleosides, and
           nucleotides, Salvage of nucleosides and nucleotides].
          Length = 241

 Score =  151 bits (384), Expect = 6e-47
 Identities = 55/118 (46%), Positives = 72/118 (61%), Gaps = 1/118 (0%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
               +    RQ +I+SL+ LG   HD GT VC EGPRFS+RAES +F+SW A +V MT V
Sbjct: 125 FGDPYCEDLRQRLIESLRRLGLTVHDGGTYVCTEGPRFSTRAESRMFKSWGADIVGMTGV 184

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
           PE VLA+E  L YA +A+ TDYDCW      V   +V +   ENVEK  ++ +  + K
Sbjct: 185 PEAVLARELELCYATLALVTDYDCWISAD-HVTAEEVEEVMGENVEKAKRILLEAIKK 241


>gnl|CDD|236290 PRK08564, PRK08564, 5'-methylthioadenosine phosphorylase II;
           Reviewed.
          Length = 267

 Score =  142 bits (361), Expect = 4e-43
 Identities = 58/121 (47%), Positives = 77/121 (63%), Gaps = 3/121 (2%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRS-WNAHLVNMTL 59
           M   F    R+III++ KELG + H+KGT +CIEGPRFS+RAES ++R  + A ++ MTL
Sbjct: 133 MADPFCPELRKIIIETAKELGIRTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTL 192

Query: 60  VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
           VPEV LA E G+ YA +AM TDYD W +    V   +V +   EN EK  KL    +P+I
Sbjct: 193 VPEVNLACELGMCYATIAMVTDYDVWAE--KPVTAEEVTRVMAENTEKAKKLLYEAIPRI 250

Query: 120 A 120
            
Sbjct: 251 P 251


>gnl|CDD|223084 COG0005, Pnp, Purine nucleoside phosphorylase [Nucleotide transport
           and metabolism].
          Length = 262

 Score =  127 bits (322), Expect = 3e-37
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
           M   +D   R+ + ++ KEL       +G  VC+EGPRF + AE  +FRS  A +V M+ 
Sbjct: 145 MSDPYDPELREALAEAAKELRLGHPLQEGVYVCVEGPRFETPAEIRMFRSLGADVVGMST 204

Query: 60  VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
           VPEV+LA+E GL  AA+++ T+Y         +   +VL+  KEN EKI KL    + K+
Sbjct: 205 VPEVILARELGLCVAALSLVTNYAAGIG--QPLTHEEVLEVAKENAEKIAKLLAAAIAKL 262


>gnl|CDD|181584 PRK08931, PRK08931, 5'-methylthioadenosine phosphorylase;
           Provisional.
          Length = 289

 Score =  120 bits (302), Expect = 5e-34
 Identities = 44/110 (40%), Positives = 63/110 (57%)

Query: 13  IIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLL 72
           +  + +  G   H  GT +C+EGP+FS+ AES L+RSW   ++ MT +PE  LA+EA + 
Sbjct: 141 LAAAARAEGITVHRGGTYLCMEGPQFSTLAESKLYRSWGCDVIGMTNMPEAKLAREAEIC 200

Query: 73  YAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122
           YA VAM TDYDCW    + V V  V+     N +K   L   + P + A+
Sbjct: 201 YATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADKARALVARLAPDLGAE 250


>gnl|CDD|169548 PRK08666, PRK08666, 5'-methylthioadenosine phosphorylase;
           Validated.
          Length = 261

 Score =  103 bits (259), Expect = 4e-28
 Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 10  RQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEA 69
           R+ +I + +ELG  +H  GT VC EGPRF + AE  +FR     LV MT VPE VLA+E 
Sbjct: 136 RKALITAARELGLTYHPGGTYVCTEGPRFETAAEIRMFRILGGDLVGMTQVPEAVLAREL 195

Query: 70  GLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
            + YA VA+ T+Y     +  K+  ++V++   +N E I KL +  +  I
Sbjct: 196 EMCYATVAIVTNYAAGI-SPTKLTHSEVVELMAQNSENIKKLIMKAIELI 244


>gnl|CDD|180977 PRK07432, PRK07432, 5'-methylthioadenosine phosphorylase;
           Provisional.
          Length = 290

 Score =  102 bits (256), Expect = 2e-27
 Identities = 46/108 (42%), Positives = 64/108 (59%)

Query: 14  IDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLY 73
           I SL       H  GT VC+EGP FS++AESNL+RSW A ++ MT +PE  LA+EA + Y
Sbjct: 145 IASLNLPDVTLHRGGTYVCMEGPAFSTKAESNLYRSWGATVIGMTNLPEAKLAREAEIAY 204

Query: 74  AAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAA 121
           A +A+ TDYDCW    + V V  V+    +N     K+    V +++A
Sbjct: 205 ATLALVTDYDCWHPDHDSVTVEMVIGNLHKNAVNAQKVIQETVRRLSA 252


>gnl|CDD|236107 PRK07823, PRK07823, 5'-methylthioadenosine phosphorylase;
           Validated.
          Length = 264

 Score = 99.0 bits (247), Expect = 3e-26
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query: 26  DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCW 85
           D GT V ++GPRFS+RAES  F +    LVNMT  PE VLA+E  L YAA+A+ TD D  
Sbjct: 149 DGGTMVVVQGPRFSTRAESRWFAAQGWSLVNMTGYPEAVLARELELCYAAIALVTDLDAG 208

Query: 86  RDTGNKVCVADVLKTFKENVEKITKL 111
            + G  V   DV   F  N+E++ +L
Sbjct: 209 VEAGEGVKAVDVFAEFGRNIERLKRL 234


>gnl|CDD|216264 pfam01048, PNP_UDP_1, Phosphorylase superfamily.  Members of this
           family include: purine nucleoside phosphorylase (PNP)
           Uridine phosphorylase (UdRPase) 5'-methylthioadenosine
           phosphorylase (MTA phosphorylase).
          Length = 232

 Score = 87.4 bits (217), Expect = 4e-22
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
               +D   R ++ ++   LG   H  G     +G  F + AE  L R   A  V M   
Sbjct: 118 APAPYDPELRALLEEAAARLGIPVHR-GVYATTDGFYFETPAEIRLLRRLGADAVEMETA 176

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIV 116
            E ++A+E G+ + A+ + +DY        +V   +V +  +E  E+  KL + ++
Sbjct: 177 AEAIVARELGIPFLAIRVISDYAA-GGADGEVTHEEVEEVLEEAAERAAKLLLALL 231


>gnl|CDD|236183 PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.
          Length = 272

 Score = 64.4 bits (158), Expect = 3e-13
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           M  A+D   R +     KELG     +G  V + GP + + AE  + R+  A  V M+ V
Sbjct: 156 MSDAYDPELRALAKKVAKELGIPLQ-EGVYVGVSGPSYETPAEIRMLRTLGADAVGMSTV 214

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
           PEV++A+  GL    ++  T+      +   +   +VL+  +    K  +L   I+ ++
Sbjct: 215 PEVIVARHCGLKVLGISCITNL-AAGISDEPLSHEEVLEVAERAAPKFGRLVKAILARL 272


>gnl|CDD|236390 PRK09136, PRK09136, 5'-methylthioadenosine phosphorylase;
           Validated.
          Length = 245

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 26/95 (27%), Positives = 44/95 (46%)

Query: 5   FDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVV 64
           +    RQ ++ + +  G    D G     +GPR  + AE          LV MT +PE  
Sbjct: 131 YSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAA 190

Query: 65  LAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLK 99
           LA+E GL YA +A+  ++   R    ++ +A++  
Sbjct: 191 LARELGLPYACLALVANWAAGRGDSAEITMAEIEA 225


>gnl|CDD|130758 TIGR01697, PNPH-PUNA-XAPA, inosine/guanosine/xanthosine
           phosphorylase family.  This model is a subset of the
           subfamily represented by pfam00896 (phosphorylase family
           2). This model excludes the methylthioadenosine
           phosphorylases (MTAP, TIGR01684) which are believed
           toplay a specific role in the recycling of methionine
           from methylthioadenosine. In this subfamily is found
           three clades of purine phosphorylases based on a
           neighbor-joining tree using the MTAP family as an
           outgroup. The highest-branching clade (TIGR01698)
           consists of a group of sequences from both gram positive
           and gram negative bacteria which have been annotated as
           purine nucleotide phosphorylases but have not been
           further characterized as to substrate specificity. Of
           the two remaining clades, one is xanthosine
           phosphorylase (XAPA, TIGR01699), is limited to certain
           gamma proteobacteria and constitutes a special purine
           phosphorylase found in a specialized operon for
           xanthosine catabolism. The enzyme also acts on the same
           purines (inosine and guanosine) as the other
           characterized members of this subfamily, but is only
           induced when xanthosine must be degraded. The remaining
           and largest clade consists of purine nucleotide
           phosphorylases (PNPH, TIGR01700) from metazoa and
           bacteria which act primarily on guanosine and inosine
           (and do not act on adenosine). Sequences from
           Clostridium (GP:15025051) and Thermotoga (OMNI:TM1596)
           fall between these last two clades and are
           uncharacterized with respect to substrate range and
           operon.
          Length = 248

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           +  A+D   R++  D  KELGF   + G  V + GP + + AE  + R   A  V M+ V
Sbjct: 134 LSNAYDRELRKLAQDVAKELGFPLTE-GVYVMVSGPSYETPAEIRMLRILGADAVGMSTV 192

Query: 61  PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIV 116
           PEV++A+  G+   AV++ T+      T   +   +VL       E+   L   I+
Sbjct: 193 PEVIVARHCGIKVLAVSLITNM-AAGITDVPLSHEEVLAAAAAAAERFISLLEDII 247


>gnl|CDD|233537 TIGR01700, PNPH, purine nucleoside phosphorylase I, inosine and
           guanosine-specific.  This model represents a family of
           bacterial and metazoan purine phosphorylases acting
           primarily on inosine and guanosine and not acting on
           adenosine. PNP-I refers to the nomenclature from
           Bacillus stearothermophilus where PHP-II refers to the
           nucleotidase acting on adenosine as the primary
           substrate.The bacterial enzymes (PUNA) are typified by
           the Bacilus PupG protein which is involved in the
           metabolism of nucleosides as a carbon source.Several
           metazoan enzymes (PNPH) are well characterized including
           the human and bovine enzymes which have been
           crystallized [Purines, pyrimidines, nucleosides, and
           nucleotides, Salvage of nucleosides and nucleotides].
          Length = 249

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)

Query: 1   MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
           M  A+D   RQ      K+L      +G  V + GP + + AE  L R+  A  V M+ V
Sbjct: 134 MSDAYDRDLRQKAHSIAKQLNIPLQ-EGVYVMLGGPSYETPAEVRLLRTLGADAVGMSTV 192

Query: 61  PEVVLAKEAGL-------LYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFV 113
           PEV++A+  GL       +    A   DY+            +V++  K+  EK+ K   
Sbjct: 193 PEVIVARHCGLRVFGFSLITNKAAGILDYELSVHE-------EVMEAAKQAAEKLEKFVS 245

Query: 114 HIV 116
            ++
Sbjct: 246 LLI 248


>gnl|CDD|130759 TIGR01698, PUNP, purine nucleotide phosphorylase.  This clade of
           purine nucleotide phosphorylases has not been
           experimentally characterized but is assigned based on
           strong sequence homology. Closely related clades act on
           inosine and guanosine (PNPH, TIGR01700), and xanthosine,
           inosine and guanosine (XAPA, TIGR01699) neither of these
           will act on adenosine. A more distantly related clade
           (MTAP, TIGR01694) acts on methylthioadenosine.
          Length = 237

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 35  GPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82
           GP + + AE  +     A LV M+ VPE + A+  GL    V++ T+ 
Sbjct: 156 GPHYETPAEIRMAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNL 203


>gnl|CDD|130760 TIGR01699, XAPA, xanthosine phosphorylase.  This model represents a
           small clade of purine nucleotide phosphorylases found in
           certain gamma proteobacteria. The gene is part of an
           operon for the degradation of xanthosine and is induced
           by xanthosine. The enzyme is also capable of acting on
           inosine and guanosine (but not adenosine) in a manner
           similar to those other phosphorylases to which it is
           closely related (TIGR01698, TIGR01700).
          Length = 248

 Score = 32.7 bits (74), Expect = 0.051
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 4   AFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEV 63
           A+D   R ++    KE GF   + G  V   GP F + AE  + +     +V M++VPEV
Sbjct: 137 AYDAEYRALLQKVAKEEGFPLTE-GVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEV 195

Query: 64  VLAKEAGLLYAAVAMATD 81
           + A+   L   AV+  T+
Sbjct: 196 ISARHCDLKVVAVSAITN 213


>gnl|CDD|219809 pfam08368, FAST_2, FAST kinase-like protein, subdomain 2.  This
          family represents a conserved region of eukaryotic
          Fas-activated serine/threonine (FAST) kinases
          (EC:2.7.1.-) that contains several conserved leucine
          residues. FAST kinase is rapidly activated during
          Fas-mediated apoptosis, when it phosphorylates TIA-1, a
          nuclear RNA-binding protein that has been implicated as
          an effector of apoptosis. Note that many family members
          are hypothetical proteins. This subdomain is often
          found associated with the FAST kinase-like protein,
          subdomain 2.
          Length = 93

 Score = 28.8 bits (65), Expect = 0.38
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 29 TAVCIE-----GPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEA--GLL----YAAVA 77
           AVC+E     GPR   R +   F           + P     KEA   LL    Y    
Sbjct: 11 AAVCLECPEYKGPRLPDRYQVPSFLVPLLSKKEKRMSPLQQEVKEALKSLLGGEQYVKHD 70

Query: 78 MAT------DYDCWRDTGNKV 92
          + T      D++C  D   K 
Sbjct: 71 VLTPYGYTIDFECVLDKNGKP 91


>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
          Length = 496

 Score = 28.3 bits (63), Expect = 1.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 19  ELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGL 71
           EL F+  D GT V      F + A S    S+   ++++T + E+   K    
Sbjct: 91  ELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIEDRKIDNF 143


>gnl|CDD|234716 PRK00292, glk, glucokinase; Provisional.
          Length = 316

 Score = 27.8 bits (63), Expect = 1.9
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 26/71 (36%)

Query: 13  IIDSLKELGFK--FHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVP-EVVLAKEA 69
            ++  K  GF+  F DKG        RFS+                   +P  V+   + 
Sbjct: 268 FLEFFKASGFRAAFEDKG--------RFSA-----YLAD----------IPVYVITHPQP 304

Query: 70  GLLYAAVAMAT 80
           GLL A   +  
Sbjct: 305 GLLGAGAYLRQ 315


>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
           factors and mRNA splicing factors [Transcription / RNA
           processing and modification / Cell division and
           chromosome partitioning].
          Length = 512

 Score = 27.8 bits (62), Expect = 2.2
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 84  CWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEI 128
            W+ T ++   A V K    N  K+  L +    K ++  W N +
Sbjct: 22  SWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHL 66


>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
           TA0175-type.  This group of Archaeal sequences, now
           known to be phosphoglycolate phosphatases, is most
           closely related to the sucrose-phosphate phosphatases
           from plants and cyanobacteria (TIGR01485). Together,
           these two models comprise a subfamily model (TIGR01482).
           TIGR01482, in turn, is a member of the IIB subfamily
           (TIGR01484) of the Haloacid Dehalogenase (HAD)
           superfamily of aspartate-nucleophile hydrolases.
          Length = 215

 Score = 26.6 bits (59), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 80  TDYDCWRDTGNKVCVADVLKTFKENVEKITK 110
            D D +R  G KV VA+     KE  + +T 
Sbjct: 174 NDIDLFRVVGFKVAVANADDQLKEIADYVTS 204


>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit;
           Provisional.
          Length = 197

 Score = 26.3 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 64  VLAKEAGLLYAAVAMATDYDCWRDTGNKV---CVADVLKTFKENVEKIT 109
           ++AKE G     V   TD D W D+ + V    V +V++T  E  E I+
Sbjct: 149 IIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEEFIS 197


>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
          Length = 911

 Score = 26.3 bits (59), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 62  EV-VLAKEAGLLYAAVAMAT 80
           EV +L KEAGLL  A A A 
Sbjct: 503 EVLLLLKEAGLLDPAAARAP 522


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,165,327
Number of extensions: 609292
Number of successful extensions: 695
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 32
Length of query: 148
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 60
Effective length of database: 7,034,450
Effective search space: 422067000
Effective search space used: 422067000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)