RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17033
(148 letters)
>1cb0_A Protein (5'-deoxy-5'-methylthioadenosine phosphor;
methylthioadenosine phosphorylase, purine nucleoside
phospho purine salvage, adenine; HET: ADE; 1.70A {Homo
sapiens} SCOP: c.56.2.1 PDB: 1cg6_A* 1k27_A* 1sd1_A*
1sd2_A* 3ozc_A* 3ozd_A* 3oze_A
Length = 283
Score = 194 bits (495), Expect = 2e-63
Identities = 72/142 (50%), Positives = 99/142 (69%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
M F TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W A ++NMT V
Sbjct: 140 MAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTV 199
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
PEVVLAKEAG+ YA++AMATDYDCW++ V V VLKT KEN K L + +P+I
Sbjct: 200 PEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIG 259
Query: 121 AKDWTNEITELKSVVETSNMSP 142
+ +W+ + LK++ + S + P
Sbjct: 260 STEWSETLHNLKNMAQFSVLLP 281
>3ozb_A Methylthioadenosine phosphorylase;
5'-methylthioinosine,phosphorylase, transferase; HET:
HPA; 2.80A {Pseudomonas aeruginosa}
Length = 259
Score = 183 bits (466), Expect = 3e-59
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
+D RQ +I++L+ LG G C +GPR + AE +V MT +
Sbjct: 143 FSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGM 202
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVP 117
PE LA+E L YA +A+ + + G + +A++ + + + K+ ++ ++
Sbjct: 203 PEAALARELDLPYACLALVVNPAAGKSAGI-ITMAEIEQALHDGIGKVREVLARVLA 258
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta
sheet, beta barrel, transferase; HET: MTA; 1.45A
{Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Length = 270
Score = 183 bits (466), Expect = 4e-59
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRS-WNAHLVNMTL 59
M F NS R++ I++ KEL K H+ GT +CIEGPRFS+RAES +R + A ++ MTL
Sbjct: 133 MADPFCNSLRKLAIETAKELNIKTHESGTYICIEGPRFSTRAESRTWREVYKADIIGMTL 192
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
VPEV LA EA + YA +AM TDYD + + V +V + EN EK KL ++ K+
Sbjct: 193 VPEVNLACEAQMCYATIAMVTDYDVFAEIP--VTAEEVTRVMAENTEKAKKLLYALIQKL 250
Query: 120 AAKDWT 125
K
Sbjct: 251 PEKPEE 256
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase;
HET: ADE; 1.78A {Aeropyrum pernix}
Length = 275
Score = 180 bits (460), Expect = 4e-58
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRS-WNAHLVNMTL 59
M F RQ +IDS + LG+ H++GT VCIEGPRFS+RAES +++ + A ++ MTL
Sbjct: 138 MADPFCEDLRQRLIDSGRRLGYTVHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTL 197
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
VPE+ LA EA L YA +AM TDYD W D V +V + NVE+ ++ ++PK+
Sbjct: 198 VPEINLACEAQLCYATLAMVTDYDVWADRP--VTAEEVERVMISNVERARRMLYDVIPKL 255
Query: 120 AAKDWT 125
A +
Sbjct: 256 AGEPEL 261
>3odg_A Xanthosine phosphorylase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; HET: XAN; 1.64A {Yersinia
pseudotuberculosis} PDB: 1yqq_A* 1yqu_A* 1yr3_A*
Length = 287
Score = 76.5 bits (189), Expect = 8e-18
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
+ A+D R + ++L +G V GP F + AE + + +V M++V
Sbjct: 168 LANAYDKDLRADMAKIAQQLDIPLT-EGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVV 226
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIA 120
PEV+ A GL A+ T+ + + LK K TKL + A
Sbjct: 227 PEVLSAAHCGLKVIALTAITNL-AEGLSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSKA 285
Query: 121 AK 122
+
Sbjct: 286 LR 287
>3phb_E Purine nucleoside phosphorylase; PNP,immucillin,
transferase-transferase inhibitor complex; HET: IM5;
2.30A {Homo sapiens}
Length = 324
Score = 70.8 bits (174), Expect = 1e-15
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
M A+D + RQ + + K++G + +GT V + GP F + AE + + A V M+
Sbjct: 197 MSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMST 256
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCW-RDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
VPEV++A+ GL ++ T+ ++ K +VL K+ +K+ + ++
Sbjct: 257 VPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMAS 316
Query: 119 IAAKD 123
I D
Sbjct: 317 IPLPD 321
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
glycosyltransferase, transferase; 1.80A {Streptococcus
mutans} PDB: 3lba_A*
Length = 303
Score = 70.8 bits (174), Expect = 1e-15
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
M A+ R++ ++G K +G + + GP + + AE F++ A V M+ V
Sbjct: 188 MSNAYTADYREVAHQVADKIGIKLD-EGVYIGVSGPSYETPAEIRAFKTLGADAVGMSTV 246
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
PEV++A +GL ++ T+Y +++ +V+ ++ E L I+ ++
Sbjct: 247 PEVIVAVHSGLKVLGISAITNYAA--GFQSELNHEEVVAVTQQIKEDFKGLVKAILVEL 303
>3khs_A Purine nucleoside phosphorylase; alpha-beta structure, mixed
beta-barrel, hydrolase; 2.38A {Grouper iridovirus}
Length = 285
Score = 69.9 bits (172), Expect = 2e-15
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDK-GTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
M +D + R+ I + +ELG + G C+ GP F + AE + R + V M+
Sbjct: 159 MTSVYDKTLRKYAISAARELGMSYATHEGVYCCVNGPSFETPAECKILRLMGSDAVGMST 218
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDC-WRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
PE ++AK G+ AV++ ++ +T + +VL+ +E ++T L ++ K
Sbjct: 219 APETIVAKHGGMRCLAVSLISNVIASNCETPAEPTHEEVLRAGEEASARMTALVKLVIEK 278
Query: 119 IAA 121
I
Sbjct: 279 IRG 281
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase,
transferase, 9-deazaguanine, multisubstrate analogue
inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos
taurus} PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A*
2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A*
2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A*
1vfn_A* ...
Length = 284
Score = 69.2 bits (170), Expect = 5e-15
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
M A+D RQ + K++G + +GT V + GP F + AE L R+ A V M+
Sbjct: 162 MSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMST 221
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCW-RDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
VPEV++A+ GL ++ T+ ++ K +VL+ K+ +K+ + ++
Sbjct: 222 VPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMAS 281
Query: 119 I 119
I
Sbjct: 282 I 282
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 69.0 bits (169), Expect = 8e-15
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
M +D Q +++G + +G C+ GP F + AE + + M+
Sbjct: 247 MANTYDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMST 306
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCV--ADVLKTFKENVEKITKLFVHIVP 117
V E++ A+ G+ A ++ T+ C + ++ K + + + IV
Sbjct: 307 VHEIITARHCGMTCFAFSLITNM-CTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVK 365
Query: 118 KIAA 121
I
Sbjct: 366 HIHY 369
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 67.6 bits (166), Expect = 1e-14
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
+ A+D R++ + +E GF +G V GP + + AE + + +V M+
Sbjct: 164 LSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMST 223
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCV--ADVLKTFKENVEKITKLFVHIVP 117
+PEVV+A+ G+ AV++ T+ D + + +VL T + E + F I+
Sbjct: 224 IPEVVIARHCGIQVFAVSLVTNI-SVLDVESDLKPNHEEVLATGAQRAELMQSWFEKIIE 282
Query: 118 KIA 120
K+
Sbjct: 283 KLP 285
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A
{Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Length = 266
Score = 67.2 bits (165), Expect = 2e-14
Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
+ + R++ + +G GP + + AE + A LV M+
Sbjct: 155 LTDVYSPRLREL----AHRVDPTLP-EGVYAQFPGPHYETPAEVRMAGILGADLVGMSTT 209
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
E + A+ GL V++ T+ + + A+V++ + +I+ L I +
Sbjct: 210 LEAIAARHCGLEVLGVSLVTNL-AAGISPTPLSHAEVIEAGQAAGPRISALLADIAKR 266
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex,
transferase; HET: IMH; 1.75A {Mycobacterium
tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A*
3iom_A*
Length = 268
Score = 66.8 bits (164), Expect = 3e-14
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
+ A+ R++ ++ + +G + GP + + AE + ++ A LV M+ V
Sbjct: 156 LTDAYSPRLREL----ARQSDPQLA-EGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTV 210
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
E + A+ AG V++ T+ TG + A+VL + ++ L ++ +
Sbjct: 211 HETIAARAAGAEVLGVSLVTNL-AAGITGEPLSHAEVLAAGAASATRMGALLADVIAR 267
>1vmk_A Purine nucleoside phosphorylase; TM1596, structural genomics
protein structure initiative, PSI, joint center for
structu genomics; HET: GUN; 2.01A {Thermotoga maritima}
SCOP: c.56.2.1
Length = 277
Score = 63.0 bits (154), Expect = 7e-13
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
M D + I + +G + + GP + + AE +F A LV M+ V
Sbjct: 166 MSSVVDPEWARKI-----QERLSLK-EGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTV 219
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
PEV+ AK GL + T+ T ++ +V++T K KI K V
Sbjct: 220 PEVIAAKHCGLKVVVFSCVTNM-AAGITHGRLSHEEVVRTTKMAQGKIEKALTTAVEV 276
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 7e-05
Identities = 23/155 (14%), Positives = 54/155 (34%), Gaps = 41/155 (26%)
Query: 4 AFDNS------TRQI-IIDSLKELGFKFHDKGTAVCIEGPRFS-SRAES-NLFRSWNAHL 54
AF+ S TR + D L T + ++ + + E +L +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSA------ATTTHISLDHHSMTLTPDEVKSLLLKY---- 310
Query: 55 VNMTL--VPEVVLAKEAGLLYAAVA-----MATDYDCWRDTGN-------KVCVADVLKT 100
++ +P VL + +A +D W+ + + +VL+
Sbjct: 311 LDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEP 368
Query: 101 --FKENVEKITKLF---VHIVPKIAAKDWTNEITE 130
+++ ++++ +F HI + + W + I
Sbjct: 369 AEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKS 402
Score = 27.1 bits (59), Expect = 2.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 37 RFSSRAESNLFRSWNAHLVNMTLVPEV-VLAKEA 69
F + E NL S L+ + L+ E + +EA
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 2e-04
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 47/156 (30%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKG--------TAVCIEGPRFSSRAESNLFRSWNA 52
+ + S I+I++ L F + +A+ E +F+ N
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 53 HLVNMTLVPEVVLAKEAGLLYA---------AVAMATDYDCWRDTGNK------------ 91
H + T E GLL A + A ++ + G
Sbjct: 1713 HSTSYTFRSE------KGLLSATQFTQPALTLMEKAA-FEDLKSKGLIPADATFAGHSLG 1765
Query: 92 -----VCVADVLKTFKENVEKIT----KLFVHIVPK 118
+ADV+ + + V ++ VP+
Sbjct: 1766 EYAALASLADVM-SIESLV-EVVFYRGMTMQVAVPR 1799
Score = 29.6 bits (66), Expect = 0.42
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 37/103 (35%)
Query: 51 NAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEK-IT 109
++L T + ++ A A+A W F +V K IT
Sbjct: 264 RSYLKGATGHSQGLVT--A----VAIAETDS---WES-------------FFVSVRKAIT 301
Query: 110 KLFVHI-------VPKIAAKDWTNEITELKSVVETSNMSPQSP 145
LF I P + + L+ +E + P SP
Sbjct: 302 VLF-FIGVRCYEAYPNTSL-----PPSILEDSLENNEGVP-SP 337
Score = 27.7 bits (61), Expect = 1.9
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 23/105 (21%)
Query: 29 TAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV------PEVVLAKEAGL--LYAAVAMAT 80
TA + F ++ S LFR+ + + + +E L LY
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EE--LRDLY------Q 178
Query: 81 DYDCW-RDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDW 124
Y D A+ L K+F + +W
Sbjct: 179 TYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQ---GLNILEW 218
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 27.5 bits (61), Expect = 1.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 1 ME--PAFDNS-TRQIIIDSLKELGFKFHDK 27
+E P F S + I + L + + D
Sbjct: 128 IENVPLFKESLVFKEIYNILIKNQYYIKDI 157
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 26.9 bits (59), Expect = 2.4
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 94 VADVLKTFKENVEKITKLFVHIVPKIAAKDW---TNEITELKSVVETSNMSPQ 143
D L + KE +K + ++ I+ KI + +E+T + ++E + MS
Sbjct: 153 GQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDG 205
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1 ME--PAFDNS-TRQIIIDSLKELGFKFHDK 27
+E F+ S TR ++I +++ GF++ +
Sbjct: 117 LENVKGFEVSSTRDLLIQTIENCGFQYQEF 146
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 3.9
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 67 KEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTN 126
EA A D ++ + L T+ ++ + H A D N
Sbjct: 1296 NEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGVASFHGTS-TKAND-KN 1353
Query: 127 EITELKSV-----VETSNMSPQSPQKS 148
E + + N QK
Sbjct: 1354 ESATINEMMKHLGRSEGNPVIGVFQKF 1380
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism,
pentose phosphate pathway; 2.10A {Escherichia coli}
PDB: 1nn4_A
Length = 149
Score = 25.5 bits (57), Expect = 5.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
+ I+ L E G + DKGT
Sbjct: 16 KHEIVAHLVERGVEVIDKGT 35
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 25.8 bits (57), Expect = 5.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 6 DNSTRQIIIDSLKELGFKF 24
DN RQ + ++ GF
Sbjct: 80 DNRLRQKLGRKARDHGFSL 98
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; 1.90A {Thermotoga maritima} SCOP:
c.121.1.1
Length = 155
Score = 25.6 bits (57), Expect = 5.5
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
++ + + L G + D GT
Sbjct: 27 KEKVKNYLLGKGIEVEDHGT 46
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold;
HET: RB5; 2.07A {Clostridium thermocellum} PDB: 3ph4_A*
Length = 169
Score = 25.6 bits (57), Expect = 5.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
++ I D LK+ G++ D GT
Sbjct: 35 KREIADFLKKRGYEVIDFGT 54
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A
{Clostridium thermocellum} PDB: 3hee_A*
Length = 149
Score = 25.5 bits (57), Expect = 5.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
++ I D LK+ G++ D GT
Sbjct: 15 KREIADFLKKRGYEVIDFGT 34
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.30A {Giardia lamblia}
Length = 166
Score = 25.6 bits (57), Expect = 6.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
R + G++ D GT
Sbjct: 36 RMFLQQRASAHGYEVMDLGT 55
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar,
carbohydrate metabolism, pentose phosphate pathway;
HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP:
c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Length = 162
Score = 25.6 bits (57), Expect = 6.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
+Q II+ LK+ G + D G
Sbjct: 18 KQRIIEHLKQTGHEPIDCGA 37
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural
genomics center for infectious DI niaid; 1.95A
{Anaplasma phagocytophilum}
Length = 148
Score = 25.2 bits (56), Expect = 6.9
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 10 RQIIIDSLKELGFKFHDKGT 29
R + L++LG + D G
Sbjct: 22 RLFLSAYLRDLGCEVFDCGC 41
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 25.2 bits (56), Expect = 9.0
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 9 TRQIIIDSLKELGFKFH 25
RQ I L + ++
Sbjct: 201 MRQFCIRLLAQSSYQLV 217
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI
acetate kinase, transferase; HET: PGE; 1.90A
{Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Length = 391
Score = 25.1 bits (56), Expect = 9.7
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAES 44
D + R+ + ++ELG ++ +G R S +S
Sbjct: 328 DAAVRRDAVSGMEELGIVLDERRNLAGGKGARQISADDS 366
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 25.2 bits (56), Expect = 9.7
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 94 VADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVV-------ETSNMSPQSPQ 146
VAD ++ +E + + ++ + TE ++ E+ + P S
Sbjct: 319 VADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMF 378
Query: 147 K 147
+
Sbjct: 379 R 379
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.384
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,167,215
Number of extensions: 117469
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 37
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)