RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17033
(148 letters)
>d1cb0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 121 bits (304), Expect = 2e-35
Identities = 71/140 (50%), Positives = 98/140 (70%)
Query: 3 PAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPE 62
F TR+++I++ K+LG + H KGT V IEGPRFSSRAES +FR+W A ++NMT VPE
Sbjct: 134 EPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPE 193
Query: 63 VVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122
VVLAKEAG+ YA++AMATDYDCW++ V V VLKT KEN K L + +P+I +
Sbjct: 194 VVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGST 253
Query: 123 DWTNEITELKSVVETSNMSP 142
+W+ + LK++ + S + P
Sbjct: 254 EWSETLHNLKNMAQFSVLLP 273
>d3pnpa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Cow
(Bos taurus) [TaxId: 9913]}
Length = 284
Score = 114 bits (286), Expect = 1e-32
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFH-DKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTL 59
M A+D RQ + K++G + +GT V + GP F + AE L R+ A V M+
Sbjct: 162 MSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMST 221
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWR-DTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
VPEV++A+ GL ++ T+ ++ K +VL+ K+ +K+ + ++
Sbjct: 222 VPEVIVARHCGLRVFGFSLITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMAS 281
Query: 119 I 119
I
Sbjct: 282 I 282
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 112 bits (282), Expect = 4e-32
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLV 60
+ A+ R++ S +G + GP + + AE + ++ A LV M+ V
Sbjct: 150 LTDAYSPRLRELARQS-----DPQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTV 204
Query: 61 PEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
E + A+ AG V++ T+ TG + A+VL + ++ L ++ +
Sbjct: 205 HETIAARAAGAEVLGVSLVTNLAAG-ITGEPLSHAEVLAAGAASATRMGALLADVIAR 261
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 101 bits (252), Expect = 9e-28
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 23 KFHDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDY 82
+G GP + + AE + A LV M+ E + A+ GL V++ T+
Sbjct: 172 PTLPEGVYAQFPGPHYETPAEVRMAGILGADLVGMSTTLEAIAARHCGLEVLGVSLVTNL 231
Query: 83 DCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPK 118
+ + A+V++ + +I+ L I +
Sbjct: 232 AAG-ISPTPLSHAEVIEAGQAAGPRISALLADIAKR 266
>d1v4na_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 266
Score = 99.5 bits (247), Expect = 5e-27
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 1 MEPAFDNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLF-RSWNAHLVNMTL 59
M F R II+DS K+LG HDKGT +CIEGPRFS+RAES ++ + A ++ MTL
Sbjct: 128 MADPFCEHLRSIILDSAKDLGITTHDKGTYICIEGPRFSTRAESIVWKEVFKADIIGMTL 187
Query: 60 VPEVVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKI 119
VPEV LA EA + Y+ + M TDYD + D V +V K EN K+ KL ++ ++
Sbjct: 188 VPEVNLACEAEMCYSVIGMVTDYDVFADI--PVTAEEVTKVMAENTAKVKKLLYEVIRRL 245
Query: 120 AAK 122
K
Sbjct: 246 PEK 248
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermotoga maritima [TaxId: 2336]}
Length = 265
Score = 96.3 bits (239), Expect = 8e-26
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 25 HDKGTAVCIEGPRFSSRAESNLFRSWNAHLVNMTLVPEVVLAKEAGLLYAAVAMATDYDC 84
+G + + GP + + AE +F A LV M+ VPEV+ AK GL + T+
Sbjct: 172 LKEGVYIGVLGPSYETPAEIRVFEKLGADLVGMSTVPEVIAAKHCGLKVVVFSCVTNMAA 231
Query: 85 WRDTGNKVCVADVLKTFKENVEKITKLFVHIV 116
G ++ +V++T K KI K V
Sbjct: 232 GITHG-RLSHEEVVRTTKMAQGKIEKALTTAV 262
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 24.9 bits (53), Expect = 4.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 5 FDNSTRQIIIDSLKELGFKFHDK 27
+ + ++ LKE G K
Sbjct: 159 LKDPAFRDLVRRLKEAGVSMESK 181
>d1jysa_ c.56.2.1 (A:) 5'-Methylthioadenosine/S-Adenosylhomocysteine
nucleosidase {Escherichia coli [TaxId: 562]}
Length = 230
Score = 24.9 bits (53), Expect = 5.1
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 16/120 (13%)
Query: 6 DNSTRQIIIDSLKELGFKFHDKGTAVCIEGPRFSSRAESNLFRSWN---AHLVNMTLVPE 62
D+ + EL + + G F + + N A V M
Sbjct: 122 DDKLIAAAEACIAELNLNAV---RGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAI 178
Query: 63 VVLAKEAGLLYAAVAMATDYDCWRDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAK 122
+ + + V +D +F E + K +V + K
Sbjct: 179 AHVCHNFNVPFVVVRAISDV----------ADQQSHLSFDEFLAVAAKQSSLMVESLVQK 228
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of
haemagglutinin-esterase-fusion glycoprotein HEF1
{Influenza C virus [TaxId: 11552]}
Length = 271
Score = 24.6 bits (53), Expect = 5.9
Identities = 3/17 (17%), Positives = 6/17 (35%)
Query: 35 GPRFSSRAESNLFRSWN 51
+F + +L S
Sbjct: 77 ADKFRFLSGGSLMLSMF 93
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 24.1 bits (52), Expect = 7.2
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 96 DVLKTFKENVEKITKLFVHIVPKIAAK 122
D K + ++KIT F+ ++A K
Sbjct: 152 DETKRAEAEIQKITDEFIAKADQLAEK 178
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 24.0 bits (52), Expect = 9.4
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 10/62 (16%)
Query: 86 RDTGNKVCVADVLKTFKENVEKITKLFVHIVPKIAAKDWTNEITELKSVVETSNMSPQSP 145
R + V D F N E +T + V VPK D+ L + N+ P S
Sbjct: 169 RSLHDIVKPED----FVLNSEHLTTVLV-AVPKSLKSDFEKSYETL-----SKNVVPASA 218
Query: 146 QK 147
Sbjct: 219 SV 220
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.384
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,711
Number of extensions: 21104
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 23
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)