BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17035
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 6 CWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 50
CW+P VF L Q G P ++ +A+ +L +NS NPI+Y
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILY 393
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 3 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 52
F+ CW+P + LL V G +T + + A LA LNS NPIIY +
Sbjct: 430 FIACWAPLFILLLLDV-GCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTL 478
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 431 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 476
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 418 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 463
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 417 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 462
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 386 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 431
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 418 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 463
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 2 AFVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 258 TFTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 304
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 283 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 328
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 282 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 327
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 3 FVLCWSPYIVFDLLQV-YGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V + R + YI L+ + +NS NP+IYC
Sbjct: 226 FTLCWLPFFIVNIVHVIQDNLIRKEVYI----LLNWIGYVNSGFNPLIYC 271
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 3 FVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V+ +P +++ VA L NSA NPIIYC
Sbjct: 241 FTLCWLPFFLVNIVNVFNRDLVP---DWLFVA--FNWLGYANSAMNPIIYC 286
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 3 FVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V+ +P +++ VA L NSA NPIIYC
Sbjct: 239 FTLCWLPFFLVNIVNVFNRDLVP---DWLFVA--FNWLGYANSAMNPIIYC 284
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
AF++CW P+ + +L + + AT L +NSA NP+IY F
Sbjct: 409 AFIVCWLPFFLTHVLNTHCQTCHVSPELYSAT--TWLGYVNSALNPVIYTTF 458
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 3 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 52
F+L WSPY V LL +G + Y A L A ++ NP+IY +
Sbjct: 269 FLLSWSPYAVVALLAQFGPLEWVTPY--AAQLPVMFAKASAIHNPMIYSV 316
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 3 FVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCI 52
F+L WSPY V LL +G + Y A L A ++ NP+IY +
Sbjct: 270 FLLSWSPYAVVALLAQFGPLEWVTPY--AAQLPVMFAKASAIHNPMIYSV 317
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQ-------NYIAVATLIQSLAPLNSAANPIIY 50
+AFV+CW PY V L+ + YI Q Y L +LA +SA NPI+Y
Sbjct: 416 IAFVVCWLPYHVRRLM--FCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILY 470
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 6 CWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 50
CW+P +F L++ G + ++ +L NS+ NPI+Y
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILY 452
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQN-YIAVATLIQSLAPLNSAANPIIY 50
AF+LCW PY +F V + N ++ + T+ L +NS NP+IY
Sbjct: 381 AFILCWIPYFIF--FMVIAFCKNCCNEHLHMFTIW--LGYINSTLNPLIY 426
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 13/63 (20%)
Query: 3 FVLCWSPYIVFDLLQVYG---YIPR--TQNYIAVATLIQSLAPLNSAANPIIYCI----F 53
F +CW P+ +F LL Y+ + Q Y+A+ L S ++ NPIIYC F
Sbjct: 257 FAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMS----STMYNPIIYCCLNDRF 312
Query: 54 RTG 56
R G
Sbjct: 313 RLG 315
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQ---------NYIAVA-TLIQSLAPLNSAANPIIY 50
+ F+LCW PY +L+ + + RTQ N I A + L L+S NPIIY
Sbjct: 221 LIFLLCWLPY---NLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIY 277
Query: 51 CI----FRTG 56
FR G
Sbjct: 278 AFIGQNFRHG 287
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 6 CWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIY 50
CW+P ++ +++ IP T +L NS NP++Y
Sbjct: 395 CWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLY 439
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,644,394
Number of Sequences: 62578
Number of extensions: 42498
Number of successful extensions: 124
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 28
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)