Query psy17035
Match_columns 60
No_of_seqs 111 out of 1130
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:09:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.7 3.3E-19 1.1E-23 103.1 2.2 59 2-60 417-480 (510)
2 3vw7_A Proteinase-activated re 99.6 1.3E-16 4.6E-21 90.7 3.2 59 2-60 398-458 (484)
3 4dkl_A MU-type opioid receptor 99.6 1.4E-16 4.7E-21 90.1 0.4 59 2-60 391-449 (464)
4 2rh1_A Beta-2-adrenergic recep 99.6 1.3E-16 4.5E-21 91.9 -0.7 55 2-60 416-470 (500)
5 2lnl_A C-X-C chemokine recepto 99.6 4.6E-16 1.6E-20 84.5 0.6 59 2-60 222-287 (296)
6 3odu_A C-X-C chemokine recepto 99.5 1.8E-15 6.1E-20 86.4 1.8 59 2-60 421-486 (502)
7 3v2y_A Sphingosine 1-phosphate 99.5 9.3E-16 3.2E-20 88.9 -2.7 57 2-59 429-485 (520)
8 3eml_A Human adenosine A2A rec 99.5 2.7E-15 9.4E-20 85.2 -1.1 58 2-60 403-460 (488)
9 3uon_A Human M2 muscarinic ace 99.5 6.2E-15 2.1E-19 83.5 0.2 56 2-60 396-451 (467)
10 3pbl_A D(3) dopamine receptor, 99.4 3.2E-15 1.1E-19 85.0 -1.6 57 2-60 409-465 (481)
11 4eiy_A Adenosine receptor A2A/ 99.4 6.4E-15 2.2E-19 83.1 -1.1 58 2-60 362-419 (447)
12 3rze_A Histamine H1 receptor, 99.4 9.5E-15 3.3E-19 82.5 -1.2 56 2-60 381-436 (452)
13 4ea3_A Fusion protein of nocic 99.4 3.4E-14 1.2E-18 80.7 0.1 58 2-59 345-402 (434)
14 2ks9_A Substance-P receptor; w 99.3 7.6E-14 2.6E-18 77.2 -1.0 59 2-60 256-315 (364)
15 1u19_A Rhodopsin; G protein-co 99.3 1.1E-13 3.7E-18 76.0 -0.4 57 2-60 261-317 (349)
16 4amj_A Beta-1 adrenergic recep 99.3 1.3E-13 4.5E-18 74.6 -0.8 55 2-60 240-294 (315)
17 2z73_A Rhodopsin; visual pigme 99.2 4.4E-13 1.5E-17 76.2 -0.7 57 2-60 269-325 (448)
18 3sn6_R Lysozyme, beta-2 adrene 99.2 4.1E-13 1.4E-17 77.6 -1.2 54 2-59 430-483 (514)
19 2koe_A Human cannabinoid recep 99.1 3.6E-12 1.2E-16 52.0 -0.9 28 32-59 3-30 (40)
20 2ki9_A Cannabinoid receptor 2; 97.6 5.8E-07 2E-11 34.9 -3.2 16 2-17 14-29 (33)
21 2i9f_A Nucleocapsid; assembly, 31.9 11 0.00039 15.9 0.2 10 2-11 48-57 (69)
22 2ajw_A Alpha-conotoxin MII; al 23.0 32 0.0011 11.8 0.7 8 43-50 2-9 (26)
23 3eyi_A Z-DNA-binding protein 1 20.7 72 0.0025 14.2 1.8 26 31-56 27-53 (72)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.74 E-value=3.3e-19 Score=103.15 Aligned_cols=59 Identities=34% Similarity=0.475 Sum_probs=46.5
Q ss_pred EEEeehhHHHHHHHHHHHcccCcch-----hHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQ-----NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+||+++.++..+....... ....+..++.+++++||++||+||+++|++||++
T Consensus 417 ~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~a 480 (510)
T 4grv_A 417 AFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV 480 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5899999999999998774322211 1223456778899999999999999999999985
No 2
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=90.71 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=45.4
Q ss_pred EEEeehhHHHHHHHHHHHcc--cCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGY--IPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.++.++..+.. ............++.+++++||++||+||++++++||++
T Consensus 398 ~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~ 458 (484)
T 3vw7_A 398 IFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRY 458 (484)
T ss_dssp HHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC---
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHH
Confidence 58899999999999886542 222334445666788999999999999999999999985
No 3
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.58 E-value=1.4e-16 Score=90.09 Aligned_cols=59 Identities=22% Similarity=0.477 Sum_probs=49.8
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+...+..........++.+++++||++||+||++++++||++
T Consensus 391 ~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~ 449 (464)
T 4dkl_A 391 VFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRC 449 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHH
Confidence 58899999999999988765455555556667788899999999999999999999973
No 4
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.57 E-value=1.3e-16 Score=91.94 Aligned_cols=55 Identities=27% Similarity=0.533 Sum_probs=44.6
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|++++.++..+... .....+..+..+++++||++||+||++ +++||++
T Consensus 416 ~F~icWlP~~i~~l~~~~~~~---~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~a 470 (500)
T 2rh1_A 416 TFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIA 470 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT---SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHH
Confidence 589999999999999887532 122345667788999999999999996 9999974
No 5
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-16 Score=84.51 Aligned_cols=59 Identities=29% Similarity=0.412 Sum_probs=45.7
Q ss_pred EEEeehhHHHHHHHHHHHcccCcch-------hHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQ-------NYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+....... .......++.+++++||++||+||++.++|||++
T Consensus 222 ~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 287 (296)
T 2lnl_A 222 IFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG 287 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHH
T ss_pred heeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5789999999999988774322111 1123456778899999999999999999999974
No 6
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.53 E-value=1.8e-15 Score=86.40 Aligned_cols=59 Identities=20% Similarity=0.438 Sum_probs=45.9
Q ss_pred EEEeehhHHHHHHHHHHHcccC---c----chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIP---R----TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.++.++..+.... . ......+..++.+++++||++||+||++++++||++
T Consensus 421 ~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~ 486 (502)
T 3odu_A 421 AFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTS 486 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHH
Confidence 5889999999999887753111 1 122334456788999999999999999999999985
No 7
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.47 E-value=9.3e-16 Score=88.91 Aligned_cols=57 Identities=32% Similarity=0.538 Sum_probs=43.5
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 59 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~ 59 (60)
+|++||+|++++.++..+....... ......+..+++++||++||+||++++++||+
T Consensus 429 ~F~vcw~P~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~ 485 (520)
T 3v2y_A 429 VFIACWAPLFILLLLDVGCKVKTCD-ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRR 485 (520)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTCS-TTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 5889999999999998765322211 11223345679999999999999999999996
No 8
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.46 E-value=2.7e-15 Score=85.20 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=46.1
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.++.++..+..... ........++.+++++|+++||+||++++++||++
T Consensus 403 ~F~icw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 460 (488)
T 3eml_A 403 LFALCWLPLHIINCFTFFCPDCS-HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT 460 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHhccCccc-cccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHH
Confidence 58899999999999988754222 22233455677899999999999999999999973
No 9
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.45 E-value=6.2e-15 Score=83.50 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=45.9
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.++.++..+.... .......+..+++++|+++||+||++++++||++
T Consensus 396 ~F~icw~P~~i~~~~~~~~~~~---~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~ 451 (467)
T 3uon_A 396 AFIITWAPYNVMVLINTFCAPC---IPNTVWTIGYWLCYINSTINPACYALCNATFKKT 451 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTT---SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHH
Confidence 5889999999999998875422 1234556778899999999999999999999973
No 10
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.44 E-value=3.2e-15 Score=84.99 Aligned_cols=57 Identities=26% Similarity=0.456 Sum_probs=45.5
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+.... ........+..+++++|+++||+||++++++||++
T Consensus 409 ~F~icw~P~~i~~~~~~~~~~~--~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~ 465 (481)
T 3pbl_A 409 AFIVCWLPFFLTHVLNTHCQTC--HVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKA 465 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhccccc--cCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHH
Confidence 5889999999999988764321 22234556678899999999999999999999973
No 11
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.43 E-value=6.4e-15 Score=83.09 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=45.8
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+..... ........++.+++++||++||+||++++++||++
T Consensus 362 ~F~icw~P~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 419 (447)
T 4eiy_A 362 LFALCWLPLHIINCFTFFCPDCS-HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT 419 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhheeccHHHHHHHHHHhcCccc-ccchHHHHHHHHHHHHHhccchhhhHhccHHHHHH
Confidence 58899999999999888753211 12233455678899999999999999999999973
No 12
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.41 E-value=9.5e-15 Score=82.47 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=44.3
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+...... .....+..+++++|+++||+||++++++||++
T Consensus 381 ~f~icwlP~~i~~l~~~~~~~~~~---~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~ 436 (452)
T 3rze_A 381 AFILCWIPYFIFFMVIAFCKNCCN---EHLHMFTIWLGYINSTLNPLIYPLCNENFKKT 436 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSC---TTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhcccchhhhhccHHHHHH
Confidence 588999999999998877432222 12334677899999999999999999999973
No 13
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.39 E-value=3.4e-14 Score=80.69 Aligned_cols=58 Identities=33% Similarity=0.602 Sum_probs=47.3
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 59 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~ 59 (60)
+|++||+|+.+..++..+..............++.+++++|+++||+||.+.+++||+
T Consensus 345 ~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~ 402 (434)
T 4ea3_A 345 VFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKA 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988765444444444556677789999999999999999999996
No 14
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.32 E-value=7.6e-14 Score=77.23 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=44.9
Q ss_pred EEEeehhHHHHHHHHHHHcccCc-chhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPR-TQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+..... .........+..+++++|+++||+||++.+++||++
T Consensus 256 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 315 (364)
T 2ks9_A 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 57899999999998887643221 111233445677899999999999999999999973
No 15
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.32 E-value=1.1e-13 Score=75.98 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=44.1
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++......... ......+..+++++|+++||++|.+.+++||++
T Consensus 261 ~f~i~~~P~~i~~~~~~~~~~~~~--~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~ 317 (349)
T 1u19_A 261 AFLICWLPYAGVAFYIFTHQGSDF--GPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC 317 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCC--CHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhHhheecCCccc--chHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 478999999999888776432221 123445677899999999999999999999973
No 16
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.30 E-value=1.3e-13 Score=74.60 Aligned_cols=55 Identities=29% Similarity=0.528 Sum_probs=43.1
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..++..... .....+..+++++||++||++|. .+++||++
T Consensus 240 ~f~i~~~P~~i~~~~~~~~~~~~~---~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~ 294 (315)
T 4amj_A 240 VFTLCWLPFFLVNIVNVFNRDLVP---DWLFVAFNWLGYANSAMNPIIYC-RSPDFRKA 294 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSC---HHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHhccccHHHHc-CcHHHHHH
Confidence 478999999999998877542221 23445567789999999999999 89999973
No 17
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.24 E-value=4.4e-13 Score=76.16 Aligned_cols=57 Identities=30% Similarity=0.473 Sum_probs=44.2
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccCC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNNR 60 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~~ 60 (60)
+|++||+|+.+..++..+..... .......+..+++++|+++||+||.+++++||++
T Consensus 269 ~F~i~~~P~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 325 (448)
T 2z73_A 269 QFLLSWSPYAVVALLAQFGPLEW--VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA 325 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGG--CCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhCCccc--CChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHH
Confidence 57899999999998887653211 1123445567899999999999999999999973
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.23 E-value=4.1e-13 Score=77.59 Aligned_cols=54 Identities=28% Similarity=0.539 Sum_probs=42.8
Q ss_pred EEEeehhHHHHHHHHHHHcccCcchhHHHHHHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFRTGNNN 59 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iy~~~~~~fr~ 59 (60)
+|++||+|+.+..++..+..... ......++.+++++||++||+||. ++++||+
T Consensus 430 ~F~lcwlP~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~ 483 (514)
T 3sn6_R 430 TFTLCWLPFFIVNIVHVIQDNLI---RKEVYILLNWIGYVNSGFNPLIYC-RSPDFRI 483 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSS---CHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccccc---chHHHHHHHHHHHHHHhhhHHhhc-CCHHHHH
Confidence 48899999999999887643222 123455677899999999999999 8999996
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.11 E-value=3.6e-12 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=24.8
Q ss_pred HHHHHHHhchhhchhhhhhhhccCCccC
Q psy17035 32 ATLIQSLAPLNSAANPIIYCIFRTGNNN 59 (60)
Q Consensus 32 ~~~~~~l~~~ns~~nP~iy~~~~~~fr~ 59 (60)
..++.+++++||++||+||++.+++||+
T Consensus 3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~ 30 (40)
T 2koe_A 3 FAFASMLCLLNSTVNPIIYALRSKDLRH 30 (40)
T ss_dssp HHHHHHHHHHHHHSSTTTTBTTBHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 3456789999999999999999999986
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=97.64 E-value=5.8e-07 Score=34.90 Aligned_cols=16 Identities=19% Similarity=0.731 Sum_probs=13.1
Q ss_pred EEEeehhHHHHHHHHH
Q psy17035 2 AFVLCWSPYIVFDLLQ 17 (60)
Q Consensus 2 ~f~~~w~P~~~~~~~~ 17 (60)
+|++||+||++..++.
T Consensus 14 ~F~icW~P~~i~~~~~ 29 (33)
T 2ki9_A 14 VLLICWFPVLALMAHS 29 (33)
T ss_dssp HHTTTSSHHHHHHTTT
T ss_pred HHHHHHhHHHHHHHHH
Confidence 5889999999987654
No 21
>2i9f_A Nucleocapsid; assembly, viral protein; 2.00A {Equine arteritis virus} SCOP: d.254.1.1
Probab=31.85 E-value=11 Score=15.90 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=7.3
Q ss_pred EEEeehhHHH
Q psy17035 2 AFVLCWSPYI 11 (60)
Q Consensus 2 ~f~~~w~P~~ 11 (60)
+|.+.|.|--
T Consensus 48 tytvswvptk 57 (69)
T 2i9f_A 48 TYTVSWVPTK 57 (69)
T ss_dssp EEEEEECCCH
T ss_pred EEEEEeeeHH
Confidence 5788888753
No 22
>2ajw_A Alpha-conotoxin MII; alpha-helix, cyclic backbone; NMR {Synthetic}
Probab=23.05 E-value=32 Score=11.79 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.9
Q ss_pred hchhhhhh
Q psy17035 43 SAANPIIY 50 (60)
Q Consensus 43 s~~nP~iy 50 (60)
+|.||+.-
T Consensus 2 ccsnpvch 9 (26)
T 2ajw_A 2 CCSNPVCH 9 (26)
T ss_dssp GGGSHHHH
T ss_pred CcCCccee
Confidence 46677653
No 23
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.66 E-value=72 Score=14.18 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHhchhhc-hhhhhhhhccCC
Q psy17035 31 VATLIQSLAPLNSA-ANPIIYCIFRTG 56 (60)
Q Consensus 31 ~~~~~~~l~~~ns~-~nP~iy~~~~~~ 56 (60)
.+.++.-++.=.+= +||-+|.+-++.
T Consensus 27 AL~IAK~LGlktAK~VNp~LY~m~~~~ 53 (72)
T 3eyi_A 27 ALVIAQALGMRTAKDVNRDLYRMKSRH 53 (72)
T ss_dssp HHHHHHHTTCCSGGGTHHHHHHHHHTT
T ss_pred HHHHHHHhCcchhhhcCHHHHHHHHcc
Confidence 34456666666666 899999987654
Done!