RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17035
(60 letters)
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 52.5 bits (126), Expect = 2e-10
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
FV CW+P VF L Q G P ++ +A+ +L +NS NPI+Y
Sbjct: 345 VFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFL 396
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 45.8 bits (109), Expect = 6e-08
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1 MAFVLCWSPYIVFDLLQVYGY-IPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F +CW P+ +F LL + + V I LA ++ NPIIYC
Sbjct: 255 CTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCL 308
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 45.4 bits (107), Expect = 9e-08
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F++CW+P ++ +++ IP T +L NS NP++Y
Sbjct: 390 AVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFL 442
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 39.1 bits (91), Expect = 1e-05
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F+L WSPY V LL +G + Y A ++ A ++ NP+IY +
Sbjct: 268 SQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVM--FAKASAIHNPMIYSVS 318
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
+AF++CW PY A ++ NP+IY +
Sbjct: 260 IAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--FAKTSAVYNPVIYIMM 310
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 37.9 bits (87), Expect = 4e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F+ CW+P + LL V +T + + A LA LNS NPIIY +
Sbjct: 428 SVFIACWAPLFILLLLDVGCK-VKTCDILFRAEYFLVLAVLNSGTNPIIYTLT 479
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 37.4 bits (86), Expect = 7e-05
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
AF++CW P+ + +L + + + L +NSA NP+IY F
Sbjct: 409 AFIVCWLPFFLTHVLN--THCQTCHVSPELYSATTWLGYVNSALNPVIYTTF 458
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 37.0 bits (85), Expect = 7e-05
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 2 AFVLCWSPYIVFDLLQVY-GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F LCW P + + + ++ ++ L+ NS NP IY
Sbjct: 403 LFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIV--LSHTNSVVNPFIYAYR 453
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 36.2 bits (83), Expect = 2e-04
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1 MAFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
+AF++ W+PY V L+ + IP T V T+ L +NS NP Y +
Sbjct: 395 LAFIITWAPYNVMVLINTFCAPCIPNT-----VWTIGYWLCYINSTINPACYALC 444
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 35.8 bits (82), Expect = 2e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
AF+LCW PY +F + V + N + L +NS NP+IY +
Sbjct: 381 AFILCWIPYFIFFM--VIAFCKNCCNEH-LHMFTIWLGYINSTLNPLIYPLC 429
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 35.5 bits (81), Expect = 3e-04
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 2 AFVLCWSPYIVFDLLQVY--GYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V I + V L+ + +NS NP+IYC
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKE-----VYILLNWIGYVNSGFNPLIYC 462
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 35.0 bits (80), Expect = 4e-04
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 2 AFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
F LCW P + + + + L L+ NS NP IY
Sbjct: 362 LFALCWLPLHIINCFTFFCPDCSHAPLW-LMYLAIVLSHTNSVVNPFIYAYR 412
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 32.4 bits (74), Expect = 0.003
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 2 AFVLCWSPYIVFDLLQVYG--YIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + +++ V+ +P + L NSA NPIIYC
Sbjct: 240 VFTLCWLPFFLVNIVNVFNRDLVPDW-----LFVAFNWLGYANSAMNPIIYC 286
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 32.6 bits (74), Expect = 0.003
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 1 MAFVLCWSPY---IVFDLLQVYGYIPRT---QNYIAVATLI-QSLAPLNSAANPIIYCIF 53
+AF CW PY I D + I + +N + I ++LA + NPI+Y
Sbjct: 420 LAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFL 479
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 31.4 bits (71), Expect = 0.009
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 1 MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYC 51
F LCW P+ + ++ V+ L + +NS NP+IYC
Sbjct: 429 GTFTLCWLPFFIVNI--VHVIQDNLIRKEVYILLNW-IGYVNSGFNPLIYC 476
>1xkz_A Regulatory protein BLAR1; beta-lactam receptor, signal
transduction, signaling protein; HET: CAZ EPE; 1.75A
{Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1xa1_A*
1xa7_A* 3q7z_A* 3q7v_A* 3q81_A* 3q82_A* 3uy6_A
Length = 255
Score = 25.6 bits (56), Expect = 0.93
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 20 GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFR 54
GY+ + AT + P A I I +
Sbjct: 213 GYVITNHDKYYFATHLSDGKPSGKNAELISEKILK 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.455
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 871,688
Number of extensions: 34076
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)