RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17035
         (60 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 34.2 bits (77), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 1   MAFVLCWSPYIVFDLLQVYGYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIF 53
           +AF++CW PY                            A  ++  NP+IY + 
Sbjct: 259 IAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAF--FAKTSAVYNPVIYIMM 309


>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 246

 Score = 23.2 bits (49), Expect = 2.8
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 20  GYIPRTQNYIAVATLIQSLAPLNSAANPIIYCIFR 54
           GY+    +    AT +    P    A  I   I +
Sbjct: 206 GYVITNHDKYYFATHLSDGKPSGKNAELISEKILK 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 216,982
Number of extensions: 6484
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 2
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)