BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17038
(399 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1212
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLSAL+++ + P+ +I N+++ N ++S+ F WVPSHVGI GNE++D+ A A
Sbjct: 1002 DSLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAA 1061
Query: 71 SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+ IP+ +R ++ +L+ W +W + NKL +K W H+ R
Sbjct: 1062 HKTLTKIR-IPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQER 1117
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1210
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLSAL+++ + P+ +I N+++ N ++S+ F WVPSHVGI GNE++D+ A A
Sbjct: 999 DSLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAA 1058
Query: 71 SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+ IP+ +R ++ +L+ W +W + NKL +K W H+ R
Sbjct: 1059 HKTLTKIR-IPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQER 1114
>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]
Length = 471
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 11 DSLSALQSIQNEFSSNP----IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DSLSA+ +I +P + I++I + K ++ F W PSHVGI GNE +D LA
Sbjct: 84 DSLSAIMAIHGMDVRHPYVLQVLYAIKSISQQEKIVV---FMWCPSHVGIPGNEMADTLA 140
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHES 126
KEALSS + + +P + + +K I S W EW NKL I PW P E
Sbjct: 141 KEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWDEQHSNKLHSIHPTIGPWPPCQREK 200
Query: 127 R 127
R
Sbjct: 201 R 201
>gi|358335181|dbj|GAA53681.1| zinc finger protein 341 [Clonorchis sinensis]
Length = 1327
Score = 71.2 bits (173), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 195 RRQVKVSVKADREVWWTQKAKEMEEAQKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGV 253
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
ISNKEERL+RW E+F+ QQ + G ++P D P N E PT +E+
Sbjct: 254 TISNKEERLDRWAEYFE----QQLSWPPAGAHLEPTGDVEPWAVNVEPPTASEV 303
>gi|358340771|dbj|GAA48599.1| beta-arrestin [Clonorchis sinensis]
Length = 888
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 189 RRQVKVSVQADREVWWTQKAKEMEEAQKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGV 247
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
ISNKEERL+RW E+F+ QQ + + G ++P D P N E PT +E+
Sbjct: 248 TISNKEERLDRWAEYFE----QQLSWSPAGAHLEPTGDVEPWTVNVEPPTASEV 297
>gi|432921434|ref|XP_004080155.1| PREDICTED: uncharacterized protein LOC101161343 [Oryzias latipes]
Length = 763
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 68/125 (54%), Gaps = 14/125 (11%)
Query: 241 KREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNII 300
K +Y+ + + Q ++R+++ EWW KK + +Q A++ND+ + +K GP L+ +
Sbjct: 234 KSKYKTVKSELQTKLRQMKNEWWTKKADGIQSLADRNDSKAFFASLKEVYGPKGACLDPV 293
Query: 301 EDKNGNKI-SNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPN-------DERP 352
+ +G+ + ++K + +ERWREHF + N +TTV+ D N+P D P
Sbjct: 294 KSIDGSVLHTDKSKIMERWREHFSLLLNPETTVD------DVAVSNIPQLPVRYHMDTPP 347
Query: 353 TENEI 357
T E+
Sbjct: 348 TTEEL 352
>gi|358332951|dbj|GAA51532.1| roundabout homolog 2 [Clonorchis sinensis]
Length = 1917
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 9/114 (7%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ + A GP + P++ I+D+NG
Sbjct: 1488 RRQVKASVKADREVWWTQKAKEMEEAQKFGNARRLFQ-LIPATGPRKPPVSETIKDRNGV 1546
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
ISNKEERL+RW E+F+ QQ + G ++P D P N E PT +E+
Sbjct: 1547 TISNKEERLDRWAEYFE----QQLSWPPAGAHLEPTGDVEPWTVNVEPPTASEV 1596
>gi|358342258|dbj|GAA49764.1| E3 ubiquitin-protein ligase RBBP6 [Clonorchis sinensis]
Length = 1809
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 13/124 (10%)
Query: 242 REYQEARQKCQREVRRI----REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL 297
R+ Q R +R+V+ RE WW +K E++E + L++ ++ A GP + P+
Sbjct: 1494 RDTQAPRASIRRQVKASVKADREVWWTQKAKEMEEAQKSGNARRLFQLIR-ATGPRKPPV 1552
Query: 298 N-IIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPT 353
+ I+D+NG ISNKEERL+RW E+F+ QQ + G ++P D P N E PT
Sbjct: 1553 SETIKDRNGVTISNKEERLDRWAEYFE----QQLSWPPAGAHLEPTGDVEPWTVNVEPPT 1608
Query: 354 ENEI 357
+E+
Sbjct: 1609 ASEV 1612
>gi|358341719|dbj|GAA49321.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 671
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 143 RRQVKVSVQADREVWWTQKAKEMEEAHKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGV 201
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
ISNKEERL+RW E+F+ QQ + G ++P D P N E PT +E+
Sbjct: 202 TISNKEERLDRWAEYFE----QQLSRQPAGAHLEPTGDVEPWTVNVEPPTASEV 251
>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
Length = 1162
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 9/97 (9%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNIL----VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +AL ++ N S +P+A +IR +L ++NK ++ W+ +H G+ GNE +D+LA
Sbjct: 953 DSKAALLTVINHGSLHPLAVDIRKMLKQCALQNK---TVALYWIKAHAGLEGNERADQLA 1009
Query: 67 KEA--LSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
KEA LS SP+ + P++Y KR ++S L WN +
Sbjct: 1010 KEAALLSKKSPNYDLCPVSYVKRIIRSGSLDEWNRRY 1046
>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]
Length = 261
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEES 62
N DSLS+L ++ N ++P I N++ K K ++ F W PSHVGI+GNE +
Sbjct: 95 NICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVGILGNEVA 151
Query: 63 DRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPW 119
DRLAK+AL V +P+ + +K ++S + S W EW DNKL I+ W
Sbjct: 152 DRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDEETDNKLHSIQPVISEW 207
>gi|326667425|ref|XP_003198594.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Danio rerio]
Length = 1049
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 245 QEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKN 304
+ R K Q R E+W + N++Q+ A + +Y G+K A+GP + ++
Sbjct: 360 RSTRSKAQHIARYCANEYWQELSNDIQKAAIAGNIRGMYDGIKKALGPTQCKTAPLKSST 419
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEI--ML 359
G IS+K++++ERW EH+ ++++Q TV+ L+ I+ P + L DE PT E+ +
Sbjct: 420 GEIISDKQQQMERWVEHYSDLYSRQNTVSSAALDVIKCLPTMEEL--DEEPTAEELRKAI 477
Query: 360 ETLIFPKSPIKMNFP 374
+ L K+P P
Sbjct: 478 DKLASGKAPGSDGIP 492
>gi|443713753|gb|ELU06453.1| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]
Length = 266
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 11 DSLSALQSIQNEFSSNP----IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DSLSA+ +I +P + I++I + K ++ F W PSHVGI GNE + LA
Sbjct: 139 DSLSAIMAIHGMDVHHPYVLQVLYAIKSISQQEKIVV---FMWCPSHVGIPGNEMAHTLA 195
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHES 126
++ALSS + + +P + + +K I S W EW +NKL I PW P E
Sbjct: 196 EKALSSTNLAELPVPASDLRGLIKKYIRSQWQHEWEEQHNNKLHSIHPTIGPWPPCQREK 255
Query: 127 R 127
R
Sbjct: 256 R 256
>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]
Length = 502
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEES 62
N DSLS+L ++ N ++P I N++ K K ++ F W PSHVGI+GNE +
Sbjct: 141 NICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVGILGNEVA 197
Query: 63 DRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPW 119
DRLAK+AL V +P+ + +K ++S + S W EW DNKL I+ W
Sbjct: 198 DRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDEETDNKLHSIQPVISEW 253
>gi|358338765|dbj|GAA57294.1| COBW domain-containing protein 1 [Clonorchis sinensis]
Length = 684
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 17/122 (13%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 121 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRST-GP-RKPLVSETIRDQNG 178
Query: 306 NKISNKEERLERWREHFQHVF-------NQQTTVNLEGIEIDP-ITDNLP-----NDERP 352
+ I NK ERL+RW ++F+ F NQ+T + E D I+D++P +DE P
Sbjct: 179 SLICNKAERLDRWAQYFEQQFSWPPATSNQETWPSTESWTTDAMISDDIPDLVGLDDEPP 238
Query: 353 TE 354
T+
Sbjct: 239 TK 240
>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
Length = 891
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLS L + +N N I I+ LV++K ++ F WVPSH GI+GNE++D+ A++A
Sbjct: 212 DSLSTLLAFKNTSPRNEITSNIQACLVQSKK--NIVFMWVPSHTGIIGNEKADKHAEQAT 269
Query: 71 SSN-SPSVNTIPINYFKRFLKSKILSTWNTEWVNLA-DNKLRQIKE 114
+ +P++N I K + KILS+W W ++ NKL+ IK+
Sbjct: 270 QTILNPTINNISSIDIKNSINQKILSSWQNYWNSITLSNKLKNIKK 315
>gi|326666212|ref|XP_003198217.1| PREDICTED: probable RNA-directed DNA polymerase from transposon
X-element-like [Danio rerio]
Length = 1022
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 245 QEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKN 304
+ R K Q R E+W + N++Q+ A + +Y G+K A+GP + ++
Sbjct: 360 RSTRSKAQHIARYCTNEYWQELSNDIQKEAIAGNIRGMYDGIKKALGPTQCKTAPLKSST 419
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEI--ML 359
G IS+K++++ERW EH+ ++++Q TV L+ I+ P + L DE PT E+ +
Sbjct: 420 GEIISDKQQQMERWVEHYSDLYSRQNTVTSAALDVIKCLPTMEEL--DEEPTAEELSKAI 477
Query: 360 ETLIFPKSPIKMNFP 374
+ L K+P P
Sbjct: 478 DKLASGKAPGSDGIP 492
>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
Length = 1682
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 11 DSLSALQSIQNEFSSNPIA----QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS+SALQ+I N S +P+A Q I+ L++ K + +LH W+ +H G+ GNE +D LA
Sbjct: 1464 DSMSALQTITNYDSPHPLAVEARQNIKASLLQGKAV-TLH--WIKAHAGLKGNERADGLA 1520
Query: 67 KEAL--SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
KEA S P + PI++ KR L+ L WN +
Sbjct: 1521 KEAAENSRKRPDYDRCPISFVKRSLRMTTLEEWNRRYTT 1559
>gi|358254176|dbj|GAA54203.1| vacuolar protein sorting-associated protein 54, partial [Clonorchis
sinensis]
Length = 640
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 102 RRQVKVSVKADREVWWTQKAKEMEEAQKSGNALRLFQLIR-ATGPRKPPVSETIKDRNGV 160
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNL 346
ISNKEERL+RW E+F+ QQ + G ++P D
Sbjct: 161 TISNKEERLDRWAEYFE----QQLSWPPAGAHLEPTGDGF 196
>gi|326672568|ref|XP_003199694.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Danio rerio]
Length = 1049
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 245 QEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKN 304
+ R K Q R E+W + N++Q+ A + +Y G+K A+GP + ++
Sbjct: 360 RSTRSKAQHIARYCANEYWQELSNDIQKAAIAGNIRGMYDGIKKALGPTQCKTAPLKSST 419
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEI--ML 359
G I +K++++ERW EH+ ++++Q TV+ L+ I+ P + L DE PT E+ +
Sbjct: 420 GEIIFDKQQQMERWVEHYSDLYSRQNTVSSAALDVIKCLPTMEEL--DEEPTAEELRKAI 477
Query: 360 ETLIFPKSPIKMNFP 374
+ L K+P P
Sbjct: 478 DKLASGKAPGSDGIP 492
>gi|390340800|ref|XP_003725312.1| PREDICTED: uncharacterized protein LOC100889275 [Strongylocentrotus
purpuratus]
Length = 921
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 245 QEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKN 304
+ AR +R RR ++W +Q A+ +T+ +Y G+K GP K ++
Sbjct: 242 RTARMDAKRVARRCANDYWVSLCQSIQLAADNGNTHGMYAGIKKVFGPTIKKTLPLKAST 301
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEIMLET 361
G I++ + ++ERW EH+Q +++++ VN +E IE P+ ++L ++ E + + +
Sbjct: 302 GEVITDNKLQMERWIEHYQELYSREIEVNEATIESIESLPVIEDLDSEPSLEELKKAVNS 361
Query: 362 LIFPKSPIKMNFP 374
L K+P K P
Sbjct: 362 LSSGKAPGKYGIP 374
>gi|390368243|ref|XP_003731413.1| PREDICTED: uncharacterized protein LOC100889854, partial
[Strongylocentrotus purpuratus]
Length = 589
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 244 YQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDK 303
Y+EA + QR R+++ WW KK +LQ A+ ND + Y G+K GP + ++
Sbjct: 272 YKEACRHLQRYTRKMKTTWWEKKAEDLQRSADNNDMKSFYTGLKEVWGPQTRSTVHLKSL 331
Query: 304 NGN-KISNKEERLERWREHFQHVFNQQTTVNLEG---IEIDPITDNLPNDERPTENEIML 359
+GN S+ + LERW +HF+ + NQ + I P+ L D+ PT E+ L
Sbjct: 332 DGNTTFSDNKRVLERWSQHFETLLNQPGDIEPAARDRINQRPVVTAL--DDIPTRKELNL 389
>gi|326680843|ref|XP_003201639.1| PREDICTED: hypothetical protein LOC100537186 [Danio rerio]
Length = 1202
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 7/135 (5%)
Query: 245 QEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKN 304
+ R K Q R E+W + N++Q+ A + +Y G+K A+GP + ++
Sbjct: 511 RSTRSKAQHIARYCANEYWQELSNDIQKAAIAGNIRGMYDGIKKALGPTQCKTAPLKSST 570
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEI--ML 359
G I +K++++ERW EH+ ++++Q TV+ L+ I+ P + L DE PT E+ +
Sbjct: 571 GEIIFDKQQQMERWVEHYSDLYSRQNTVSSAALDVIKCLPTMEEL--DEEPTAEELRKAI 628
Query: 360 ETLIFPKSPIKMNFP 374
+ L K+P P
Sbjct: 629 DKLASGKAPGSDGIP 643
>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]
Length = 377
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI--RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ DSLS+LQ+I N +P +I + L+ K I L W PSHVG++GNE +D LA
Sbjct: 249 ATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIY-LVMAWCPSHVGVMGNERADLLA 307
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHES 126
KEALS + ++ IP + FK W +W + +NKL I+ W S E
Sbjct: 308 KEALSFTTCTIR-IPSSDFKPITHEFFKEKWQEQWSSEQENKLYCIQPTLGKWAKSSREI 366
Query: 127 R 127
R
Sbjct: 367 R 367
>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
Length = 364
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKR 87
I Q+ + ++K I+ F W PSHVGI GNE +D LAK+AL N + IP FK
Sbjct: 52 ILQKCTCLAGRDKRII---FIWCPSHVGIPGNETADTLAKQALGMNILNC-PIPHTDFKP 107
Query: 88 FLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+S + + W +EW NKL I+ + W P E R
Sbjct: 108 ITRSFVKTQWQSEWDQETGNKLHDIQPDIGSWPPCQREKR 147
>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
Length = 397
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEES 62
N DSLS+L ++ N ++P I N++ K K ++ F W PSHVGI+GNE +
Sbjct: 190 NICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVV---FIWCPSHVGILGNEVA 246
Query: 63 DRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPW 119
DR AK+AL V +P+ + +K ++S + S W EW DNKL I+ W
Sbjct: 247 DRQAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDGETDNKLHIIQPVISEW 302
>gi|390360439|ref|XP_003729700.1| PREDICTED: uncharacterized protein LOC100887870 [Strongylocentrotus
purpuratus]
Length = 758
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 247 ARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGN 306
AR+ QR RR +W +Q A+ +T +Y G+K GP K ++ G
Sbjct: 388 ARRDVQRVARRCANNYWLSLCQSIQLAADNGNTRGMYAGIKKVFGPTIKKTLQLKGSTGE 447
Query: 307 KISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTEN-EIMLETL 362
I++K+ ++ RW EH+Q +++++ VN +E IE P+ ++L D P+E + ++ +L
Sbjct: 448 VITDKKLQMGRWIEHYQELYSREIEVNEATIESIESLPVMEDL--DSEPSEELKKVVNSL 505
Query: 363 IFPKSPIKMNFP 374
K+P K P
Sbjct: 506 SSGKAPGKDGIP 517
>gi|358337261|dbj|GAA30618.2| anaphase-promoting complex subunit 3 [Clonorchis sinensis]
Length = 1228
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 188 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 245
Query: 306 NKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDERPTENEIMLETLIFP 365
+ I NK ERL RW ++F+ F+ P T N P TE+ + L FP
Sbjct: 246 SLICNKAERLPRWAQYFEQQFS-----------WPPATSN-PESWPSTESWTARDGLAFP 293
Query: 366 KSPIKMNFPFLVLCLLAEEH 385
++ L L + EH
Sbjct: 294 TPTFQVVHQALDLGVTQAEH 313
>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
Length = 1208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 6/109 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DS S L +I + + +P Q ++ KN ++ F WVP H GI GN E+D LA +
Sbjct: 1011 DSASVLATINSSSTRHPWIQAVQ----KNSPSQTV-FLWVPGHCGIRGNVEADHLASKGR 1065
Query: 71 SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPW 119
S + T P K + KS+I S+W EWVNL D +R+IK E + W
Sbjct: 1066 SGRLFTRLT-PGMDLKNWTKSQIRSSWALEWVNLRDKFIRKIKGETKRW 1113
>gi|358331803|dbj|GAA50559.1| glucosidase 2 subunit beta [Clonorchis sinensis]
Length = 693
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 18/115 (15%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 236 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 293
Query: 306 NKISNKEERLERWREHFQHVF-------NQQT-------TVNLEGIEIDPITDNL 346
+ I NK ERL+RW ++F+ F NQ+T TVN+E + +++ +
Sbjct: 294 SLICNKAERLDRWAQYFEQQFSWPPATSNQETWPSTESWTVNMESPSVSEVSECI 348
>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
Length = 498
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 14/128 (10%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKR 87
I Q+ + ++K I+ F W PSHVGI GNE +D +AK+AL N + + IP FK
Sbjct: 164 ILQKCTCLAGRDKRII---FIWCPSHVGIPGNETADTVAKQALGMNILNCH-IPHTDFKP 219
Query: 88 FLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQE 147
S + + W +EW NKL I+ + W PS R +SA +P+ + E
Sbjct: 220 ITCSFVKTQWQSEWDQETGNKLHDIQPDIGSWPPSKACYR--DSAYVPEGA--------E 269
Query: 148 TLGDLERQ 155
L D ER+
Sbjct: 270 ALKDEERR 277
>gi|358334863|dbj|GAA53282.1| NAD+ synthase (glutamine-hydrolysing) [Clonorchis sinensis]
Length = 1216
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 186 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 243
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 244 SLICNKAERLDRWAQYFEQQFS 265
>gi|358342147|dbj|GAA49679.1| heterogeneous nuclear ribonucleoprotein A1 A2/B1 homolog
[Clonorchis sinensis]
Length = 919
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 130 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 187
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 188 SLICNKAERLDRWAQYFEQQFS 209
>gi|443724607|gb|ELU12531.1| hypothetical protein CAPTEDRAFT_208903 [Capitella teleta]
Length = 397
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEES 62
N DSLS+L ++ N ++P I N++ K K ++ F W PSHVGI+GNE +
Sbjct: 190 NICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVGILGNEVA 246
Query: 63 DRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPW 119
DRLAK+AL V +P+ + +K ++S + S EW DNKL I+ W
Sbjct: 247 DRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLRQNEWDEETDNKLHTIQPVISEW 302
>gi|358342389|dbj|GAA49864.1| CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Clonorchis
sinensis]
Length = 350
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E++ N + L+ ++S GP RKPL II D+NG
Sbjct: 77 RRQVKLSVRADREAWWTRKAEEMEYAKNAGNVRKLFHLIRST-GP-RKPLVSEIIRDQNG 134
Query: 306 NKISNKEERLERWREHFQHVFN--------------QQTTVNLEGIEIDPITDNLPNDER 351
+ I NK ER++RW ++F+ F+ ++ TVN+E + +++ + +R
Sbjct: 135 SLICNKAERMDRWAQYFEEQFSWPPATSNPETWPSTERWTVNMEPPSVSEVSECISLLKR 194
Query: 352 PTENEIML 359
I+L
Sbjct: 195 HRYGRIIL 202
>gi|358335268|dbj|GAA53774.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 930
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 558 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 615
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 616 SLICNKAERLDRWAQYFEQQFS 637
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1397
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 17/140 (12%)
Query: 11 DSLSALQSIQ-NEFSSNPIAQEIRNILVKNKHI-----LSLHFTWVPSHVGIVGNEESDR 64
DSLS + ++ + S NP+ N L+ N H LS+ WVP H GI GNE D+
Sbjct: 1171 DSLSVVTALSCGKCSKNPVF----NKLLNNMHEAYNQNLSIVLCWVPGHAGITGNEMVDK 1226
Query: 65 LAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLH 124
A+EA S ++ ++++P ++ + S W EW DNKL +K P L
Sbjct: 1227 NAREAASRHTIDISSVPGVDLNPVVRRGLRSHWQVEWDKQVDNKLHLVK-------PHLS 1279
Query: 125 ESRESNSARLPQVSLAELKV 144
+ R +V+LA L++
Sbjct: 1280 KVLPQKLNRFTEVTLARLRI 1299
>gi|443700898|gb|ELT99633.1| hypothetical protein CAPTEDRAFT_212630, partial [Capitella teleta]
Length = 300
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
+ DSLS+LQ+I N +P +I + + +K + L W PSHVG++GNE +D LAK
Sbjct: 180 ATDSLSSLQAIGNFNIKHPYVFKILQKCTLLHKKGIYLVMAWCPSHVGVMGNERADLLAK 239
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIK---EEK 116
EALS + ++ +P + FK W +W + +NKL I+ EEK
Sbjct: 240 EALSFTTCTIR-VPSSDFKPITHEFYKEKWQEQWSSEQENKLYCIQPTIEEK 290
>gi|358338767|dbj|GAA57316.1| Golgi to ER traffic protein 4 homolog [Clonorchis sinensis]
Length = 560
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 133 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 190
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 191 SLICNKAERLDRWAQYFEQQFS 212
>gi|358336945|dbj|GAA55380.1| PIH1 domain-containing protein 1, partial [Clonorchis sinensis]
Length = 656
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 121 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRST-GP-RKPLVSETIRDQNG 178
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 179 SLICNKAERLDRWAQYFEQQFS 200
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQE---IRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
DS SALQ++ + P+ + + +++ ++ ++ F WVPSHVGI GNE +DR AK
Sbjct: 1019 DSKSALQALGRMKTDIPLVHKSLKLLDLITADRRDVT--FIWVPSHVGIEGNEAADREAK 1076
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
AL +++ S IP + ++ + S W W +KLRQI + R W P+
Sbjct: 1077 RAL-NHAVSGTQIPYSDLRQSIASATYREWQNRWEAETHSKLRQIVADVR-WRPTSKGLT 1134
Query: 128 ESNSARLPQVSLAELKVIQETLGDLERQGDLDLDLCDS 165
S + ++ + + + L+R+ + CDS
Sbjct: 1135 RRGSTTMSRLRIGHTYITHSFV--LKREEPPLCEYCDS 1170
>gi|358341146|dbj|GAA48894.1| Rab11 family-interacting protein 4 [Clonorchis sinensis]
Length = 773
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 539 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 596
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL+RW ++F+ F+
Sbjct: 597 SLICNKAERLDRWAQYFEQQFS 618
>gi|358336737|dbj|GAA55174.1| DNA polymerase alpha subunit B [Clonorchis sinensis]
Length = 823
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ + + GP RKPL II D+N
Sbjct: 130 RRQVKLSVRADREAWWTRKAEEMEDAKNDGNMRRLFH-LICSTGP-RKPLVSEIIRDQND 187
Query: 306 NKISNKEERLERWREHFQHVFN 327
++I NK ERL+RW ++F+ F+
Sbjct: 188 SQICNKAERLDRWAQYFEQQFS 209
>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
Length = 116
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 26 NPIAQEIRNILVK-NKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY 84
NP+ EIRN L +K + WVPS VGI GNE++DR+A A ++ IP
Sbjct: 6 NPLVLEIRNRLFSASKRKKEITLCWVPSRVGIPGNEDADRVASSA-KDRQVDLHKIPYTD 64
Query: 85 FKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+K LK W EW +NKL +K + W + H R
Sbjct: 65 YKHALKKSTKCRWQEEWNREMNNKLHAVKPLIQEWESARHRER 107
>gi|358336686|dbj|GAA55142.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 522
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K EL++ N + L+ ++S GP RKPL II D+NG
Sbjct: 275 RRQVKLSVRADREAWWTRKAEELEDAKNAGNVRRLFHLIRS-TGP-RKPLVSEIIRDQNG 332
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ + NK ERL+RW ++F+ F+
Sbjct: 333 SLMCNKGERLDRWAQYFERQFS 354
>gi|358255061|dbj|GAA56762.1| AP2-associated kinase [Clonorchis sinensis]
Length = 767
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 624 RRQVKLSVRANREAWWTRKAEEMEDAKNAGNVRRLFHLIRST-GP-RKPLVSETIRDQNG 681
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL RW ++F+ F+
Sbjct: 682 SLICNKAERLPRWAQYFEQQFS 703
>gi|358342719|dbj|GAA50173.1| immunoglobulin-binding protein 1b [Clonorchis sinensis]
Length = 609
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 130 RRQVKLSVRANREAWWTRKAEEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 187
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL RW ++F+ F+
Sbjct: 188 SLICNKAERLPRWAQYFEQQFS 209
>gi|443730003|gb|ELU15698.1| hypothetical protein CAPTEDRAFT_201116 [Capitella teleta]
Length = 243
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 34 NILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY--FKRFLKS 91
N++ K K ++ F W PSHVGI+GNE +DRLAK+AL V +P+ + +K ++S
Sbjct: 131 NLVRKGKLVV---FIWCPSHVGILGNEVADRLAKQALVM---PVTKLPLPHTDYKSPIRS 184
Query: 92 KILSTWNTEWVNLADNKLRQIKEEKRPW 119
+ S W EW DNKL I+ W
Sbjct: 185 YVKSLWQNEWDEETDNKLHSIQPVISEW 212
>gi|358339678|dbj|GAA47694.1| putative transporter SVOPL [Clonorchis sinensis]
Length = 1141
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 533 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRST-GP-RKPLVSETIRDQNG 590
Query: 306 NKISNKEERLERWREHFQHV 325
+ I NK ERL RW HF H+
Sbjct: 591 SLICNKAERLPRW-AHFIHL 609
>gi|358333458|dbj|GAA51962.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 483
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 297 RRQVKLSVRANREAWWTRKAEEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 354
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL RW ++F+ F+
Sbjct: 355 SLICNKAERLPRWAQYFEQQFS 376
>gi|358331618|dbj|GAA50397.1| leukocyte receptor cluster member 8 [Clonorchis sinensis]
Length = 927
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 224 RRQVKLSVRANREAWWTRKAEEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 281
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I NK ERL RW ++F+ F+
Sbjct: 282 SLICNKAERLPRWAQYFEQQFS 303
>gi|358332276|dbj|GAA50948.1| bestrophin-3 [Clonorchis sinensis]
Length = 549
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 130 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRST-GP-RKPLVSETIRDQNG 187
Query: 306 NKISNKEERLERWREHFQHV 325
+ I NK ERL RW +F+ V
Sbjct: 188 SLICNKAERLPRWAHYFEWV 207
>gi|358253788|dbj|GAA53780.1| transmembrane and TPR repeat-containing protein 3 [Clonorchis
sinensis]
Length = 687
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Query: 250 KCQRE--VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
+CQ + VR RE WW +K E+++ N + L+ ++S +GP RKPL II D+NG
Sbjct: 166 RCQVKLSVRADREAWWTRKAEEMEDAKNAGNVRKLFHLIRS-IGP-RKPLASEIIRDQNG 223
Query: 306 NKISNKEERLERWREHFQHVFNQ 328
+ I +K E L+RW ++F+ F++
Sbjct: 224 SLICSKAEGLDRWTQYFEQQFSR 246
>gi|358340408|dbj|GAA33934.2| chromosome transmission fidelity protein 18 [Clonorchis sinensis]
Length = 1146
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 255 RRQVKLSVRADREAWWTRKAQEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 312
Query: 306 NKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITD 344
+ I NK ERL RW + V+N T + +++D + D
Sbjct: 313 SLICNKAERLPRWAQ----VWNFFTMSDFGDVDLDQLLD 347
>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
Length = 1915
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI-LVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
DSLSAL S+QN +S + I ++I+N + + ++ ++WVP H I GNE +D AK A
Sbjct: 1017 DSLSALTSLQNLYSPSDIVRKIQNTHYIPKQQDKNITYSWVPGHCNIDGNELADSAAKLA 1076
Query: 70 LSS-NSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRP 118
SS NS S+ N KR ++ L EW N KL +IK P
Sbjct: 1077 HSSPNSLSLPIFSFNDIKRVIEKDTLLHCQKEW-NEMSTKLNEIKRSTLP 1125
>gi|358335153|dbj|GAA53641.1| hypothetical protein CLF_110676 [Clonorchis sinensis]
Length = 719
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 244 YQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL-- 297
+ AR+ +R+V R RE W+ +K E+++ N + L+R ++S GP RKPL
Sbjct: 292 HSSARRIIRRQVILSIRADREAWFTRKAEEMEDARNAGNVRKLFRMIRS-TGP-RKPLFS 349
Query: 298 NIIEDKNGNKISNKEERLERWREHFQHVFN 327
I D+NG+ + +K ERL+RW ++F+ F+
Sbjct: 350 KTIRDRNGSLMCSKTERLDRWAQYFEQQFS 379
>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]
Length = 400
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWV 102
+ L TW PSHVG++GNE +D LAKEALS + ++ IP + FK W +W
Sbjct: 99 IDLVMTWCPSHVGVMGNERADLLAKEALSFTTCTIR-IPSSDFKPITHEFYKEKWQEQWS 157
Query: 103 NLADNKLRQIKEEKRPWNPSLHESR 127
+ +NKL I+ W S E R
Sbjct: 158 SEQENKLYCIQPTLGKWAKSSREIR 182
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNL 104
F W PS+VGI+GNE +DRLAK+AL V +P+ + +K ++S + S W E
Sbjct: 270 FIWCPSYVGILGNEVADRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNERDEE 326
Query: 105 ADNKLRQIKE--EKRPWNPSLHESRESNSAR 133
DNKL I+ E PS H + S +
Sbjct: 327 TDNKLHTIQPIMEMNEEGPSFHLAEAVGSFK 357
>gi|358341325|dbj|GAA49032.1| protein SCAI [Clonorchis sinensis]
Length = 1159
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 209 VSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQE--ARQKCQREVRRIREEWWNKK 266
++G +I + V T+ E ++P R + R++ + VR RE WW +K
Sbjct: 59 INGHWEKISKALLKVGTTVSLLETRRQIPPGRHHNFTRRIIRRQVKPSVRADREAWWTRK 118
Query: 267 INELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLERWREHFQH 324
+E+++ N + L+ + ++ GP RKPL I D+NG+ I NK ERL+RW + Q
Sbjct: 119 ADEMEDAKNAGNVRKLFH-LITSTGP-RKPLVSETIRDQNGSLICNKAERLDRWAQEGQG 176
Query: 325 VFNQQTT 331
Q T
Sbjct: 177 SVYQPPT 183
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 265 KKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNKISNKEERLERWREHFQH 324
K++ E Q+ N + L R P+R+P I+D+NG KISNK ER++RW E+F+
Sbjct: 429 KEMEEAQKAGNARKLFQLIRATGPRKPPVREP---IKDRNGVKISNK-ERIDRWAEYFE- 483
Query: 325 VFNQQTTVNLEGIEIDPITDNLP 347
QQ G ++P LP
Sbjct: 484 ---QQLPWPPSGTHMEPTGTFLP 503
>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
Length = 619
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 8 SSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
SS ++S++ I + S I Q+ N+ ++K I+ F W PSHVGI GNE +D LA+
Sbjct: 62 SSILAISSIDLIHSYVQS--ILQKCTNLAGRDKRII---FIWCPSHVGIPGNETADTLAQ 116
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+A N + IP FK +S + + W +E NKL I+ + W P E R
Sbjct: 117 QASGMNILNC-PIPHTDFKPITRSFVETQWQSESDQETGNKLHDIEPDIGSWPPCQREKR 175
>gi|348529400|ref|XP_003452201.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Oreochromis niloticus]
Length = 496
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 220 VQDVVTSS-EAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKND 278
V+D V S A D E +A Y++ ++ +R RR + EW K E QE A++ND
Sbjct: 103 VRDQVASDPHASADQRERAMA---TYRDLARQVKRSCRRDKREWIEAKGIEAQEAADRND 159
Query: 279 TYNLY---RGMKSAVGPIRKPLNIIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNL- 334
T LY R + A G P I DKNG + E+ +RW EHF+ NQ L
Sbjct: 160 TRTLYCIVRDLTGARGGRGVP---IRDKNGRVLLTAAEQDQRWVEHFRDTLNQPEPPQLF 216
Query: 335 EGIEIDPITDNLP 347
E ++ P D LP
Sbjct: 217 EAEDLAPSMDLLP 229
>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]
Length = 574
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD 106
W PSHVG++GNE +D LAKEALS + ++ IP + FK W +W + +
Sbjct: 1 MAWCPSHVGVMGNERADLLAKEALSFTTCTIR-IPSSDFKPITHEFFKEKWQEQWSSEQE 59
Query: 107 NKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETL--GDLERQGDLDLDL-C 163
NKL I+ W ++ S R ++ LA ++ L G L R+ + + C
Sbjct: 60 NKLYSIQPTLGKW------AKSSREIRREEIVLARARIGHSHLTHGYLVRREMPPVCIPC 113
Query: 164 DSWRNLAESQEANDDGDLSS 183
R+L+ S+E D L S
Sbjct: 114 QKKRDLSPSEEWGVDQQLIS 133
>gi|358256180|dbj|GAA57695.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 196
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 237 PVARKREYQEA--RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIR 294
P+ R Y R++ + VR RE WW +K E+++ N + L+ ++S GP R
Sbjct: 83 PIIPGRNYTRCIIRRQVKLSVRADREAWWTRKAQEMEDVKNAGNVRKLFHLIRS-TGP-R 140
Query: 295 KPL--NIIEDKNGNKISNKEERLERW 318
KPL II D+NG+ IS+K ERL+RW
Sbjct: 141 KPLVSEIIRDQNGSLISSKGERLQRW 166
>gi|358331953|dbj|GAA50699.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 1124
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNK 307
R++ + VR RE WW +K E+++ N + L+R ++S I D+NG+
Sbjct: 951 RRQVKLSVRADREAWWTRKAEEMEDAKNAGNVRRLFRLIRSTGSRKSFVSETIRDQNGSL 1010
Query: 308 ISNKEERLERWREHFQHVFN 327
I NK ERL+RW ++F+ F+
Sbjct: 1011 ICNKAERLDRWAQYFEQQFS 1030
>gi|358376777|dbj|GAA93294.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 255
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 11 DSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILS----LHFTWVPSHVGIVGNEESDRL 65
DS+SALQ+I+N S+N Q I R IL +++ + WVP H GN+E DRL
Sbjct: 132 DSMSALQAIRN--SANKSGQRIIRAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRL 189
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQI 112
AKEA+ ++ F++ ++L+ W EW RQI
Sbjct: 190 AKEAVGPRKMHPFKPLLSRENGFIRKRVLNEWKEEWAKSTKGGHRQI 236
>gi|19067879|gb|AAK14815.1| polyprotein [Schistosoma japonicum]
Length = 1091
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 209 VSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKIN 268
+S +E++D Q + + SE E + ++ R K + +R RE+WW K
Sbjct: 435 ISAASTELIDPRQHIPSGSEHDE-----------QRRQLRHKLIKSLRNDREQWWVAKAK 483
Query: 269 ELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLERWREHFQHVF 326
E+++ A ++ L+R +K IR P I +K+G+ I + RL+RW EHF+ F
Sbjct: 484 EMEKAAAIGNSRQLFRLIKET--GIRNPTVSETISEKDGSIIHCQSRRLDRWAEHFREQF 541
Query: 327 NQQTTVNL 334
N T +L
Sbjct: 542 NWPTASSL 549
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 10/93 (10%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLS+L +I+N ++P QE+R+IL + H + WVPSH GI GNE +D+ A+E
Sbjct: 1026 DSLSSLSAIRNWNHNDPTTQEVRHIL--SSHPKKITLLWVPSHQGIHGNELADKAAQEM- 1082
Query: 71 SSNSPSVNTIPINY------FKRFLKSKILSTW 97
+PS+ P N K +LK K LS W
Sbjct: 1083 -RLTPSILFTPFNSKDLKSRIKLYLKEKKLSEW 1114
>gi|22164070|gb|AAM93546.1| polyprotein [Schistosoma japonicum]
Length = 976
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 209 VSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKIN 268
+S +E++D Q + + SE E + ++ R K + +R RE+WW K
Sbjct: 320 ISAASTELIDPRQHIPSGSEHDE-----------QRRQLRHKLIKSLRNDREQWWVAKAK 368
Query: 269 ELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLERWREHFQHVF 326
E+++ A ++ L+R +K IR P I +K+G+ I + RL+RW EHF+ F
Sbjct: 369 EMEKAAAIGNSRQLFRLIKET--GIRNPTVSETISEKDGSIIHCQSRRLDRWAEHFREQF 426
Query: 327 NQQTTVNL 334
N T +L
Sbjct: 427 NWPTASSL 434
>gi|358254225|dbj|GAA54238.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 474
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEE 313
VR RE WW +K E++ + L++ +S+ GP R P + I+ +NG ISNKEE
Sbjct: 94 VRADREVWWTQKAKEMEAAQKAGNIRRLFQLFRSS-GPRRPPASETIKHQNGTTISNKEE 152
Query: 314 RLERWREHFQ 323
RL+RW E+F+
Sbjct: 153 RLDRWAEYFE 162
>gi|358339791|dbj|GAA47785.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 314
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKE 312
VR RE WW +K E++E + L++ ++ A GP RKP I+ +N ISNKE
Sbjct: 226 VRADREVWWTQKAKEMEEAPKAGNARRLFQLIR-ATGP-RKPTLGETIKGRNETNISNKE 283
Query: 313 ERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP 347
ER +RW E+F+ +Q ++ L G ++P + P
Sbjct: 284 ERPDRWAEYFE----RQLSLPLSGTHLEPTVEVEP 314
>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK-----HILSLHFTWVPSHVGIVGNEESDRL 65
DS S LQ++ N+ N Q I + K+ H +S+ W+PSH GN+ +DRL
Sbjct: 1370 DSKSGLQTLTNQ--RNGSGQHIVRAIAKSARDLKAHGVSIRLQWIPSHCNNPGNDTADRL 1427
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
AKEA+ + ++ K F++ ++L+ W++EW
Sbjct: 1428 AKEAVGTQPSHPFQNLLSREKAFIRDRVLAEWDSEW 1463
>gi|358255370|dbj|GAA57075.1| sin3 histone deacetylase corepressor complex component SDS3,
partial [Clonorchis sinensis]
Length = 923
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKE 312
VR RE WW +K E+++ N + L+ ++S +GP RKPL II D+NG+ I NK
Sbjct: 270 VRADREAWWTRKAEEMEDAKNAGNVRKLFHLIRS-IGP-RKPLASEIIRDQNGSLIYNKA 327
Query: 313 ERLERW 318
ERL+RW
Sbjct: 328 ERLDRW 333
>gi|358340230|dbj|GAA48171.1| craniofacial development protein 2 [Clonorchis sinensis]
Length = 421
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEE 313
VR RE WW +K E++E + L++ ++ A GP + P++ I+ +NG ISNKE
Sbjct: 352 VRADREAWWTQKAKEMEEAQKTGNARRLFQLIR-ATGPRKPPVSETIKHQNGTTISNKET 410
Query: 314 RLERWREHFQH 324
L+RW E+F+
Sbjct: 411 SLDRWAEYFEQ 421
>gi|390334633|ref|XP_003723975.1| PREDICTED: uncharacterized protein LOC583273 [Strongylocentrotus
purpuratus]
Length = 505
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Query: 244 YQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDK 303
Y+EA + +R R+++ WW KK +LQ A+ ND + Y G+K GP + ++
Sbjct: 220 YKEACRHLRRYTRKMKTTWWEKKAEDLQRSADNNDMKSFYPGLKEVWGPQTRSTVHLKSL 279
Query: 304 NGN-KISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEIML 359
+GN S+ + LER +HF+ + Q + E I P+ L D+ PT E+ L
Sbjct: 280 DGNTTFSDNKRVLERRSQHFETLLIQPGDIKPAARERINQRPVVTAL--DDIPTRKELNL 337
>gi|358376801|dbj|GAA93312.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 316
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILS----LHFTWVPSHVGIVGNEESDRL 65
DS+SALQ+I+N +N Q I R IL +++ + WVP H GN+E DRL
Sbjct: 101 DSMSALQAIRN--PANKSGQRIIRAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRL 158
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWV-NLADNKLRQI 112
AKEA+ ++ F++ ++L+ W EW + LRQI
Sbjct: 159 AKEAVGPRKMHPFKPLLSRENGFIRKRVLNEWKEEWAKSTKGGHLRQI 206
>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 832
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHI----LSLHFTWVPSHVGIVGNEESDRLA 66
DS +AL++I N S Q ++NIL K + + L WVP H GI GNE +D+LA
Sbjct: 599 DSHTALRAIANS-SKQVGGQIVQNILRTTKQLKSIGIDLCLQWVPGHSGIRGNEMADQLA 657
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK-LRQIKEEKRPWNPSLHE 125
K++++ N P ++ + ++ W EW + A LR+I P H
Sbjct: 658 KQSINPNPTHGFPKPASHLREASRNSTTHEWRDEWSSTAKGTHLRKIDAAL----PGQHT 713
Query: 126 SRESNSARLPQVS-LAELKVIQETLGDLERQ 155
R + PQ LA+L+ L + Q
Sbjct: 714 RRLYATLPRPQARLLAQLRTGHSWLNEFRNQ 744
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 11 DSLSALQSIQN-EFSSNPIAQEIRNILV----KNKHILSLHFTWVPSHVGIVGNEESDRL 65
DSLS +++++ + NP+ + ++L +H++ WVP H I GN +D+L
Sbjct: 1024 DSLSVVKALKTLKKHRNPVLVSLYSLLCTIYTSKQHVV---VCWVPGHREIQGNVMADQL 1080
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHE 125
A A S++ + IP K +LK KI + W + W NKL IK + W P
Sbjct: 1081 AVSAHDSSANTSIAIPALDLKPYLKRKIRAYWQSTWDRQTHNKLHVIKPQLGHWPP---- 1136
Query: 126 SRESNSARLPQVSLAELKV--IQETLGDLERQGDLDLDLCD 164
+ +R +V+L L+ T L G D CD
Sbjct: 1137 ---ISKSRYTEVTLTRLRTGHTHSTHAYLLSGG--DAPFCD 1172
>gi|360044753|emb|CCD82301.1| hypothetical protein Smp_112270 [Schistosoma mansoni]
Length = 156
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
E +E R + + +R RE+WW K E+++ A +T L+R +K I
Sbjct: 16 ERKEIRSRLTKSLRNDREQWWATKAKEMEKAAAVGNTRQLFRLIKETGIKKSSVSETISK 75
Query: 303 KNGNKISNKEERLERWREHFQHVFN-QQTTVNL--------EGIEIDPIT 343
K+G I ++ +RLERW EHF+ F+ T L IE+ P+T
Sbjct: 76 KDGTPICSQPKRLERWAEHFKEQFSWPSATAQLPTILKQSERNIEVGPLT 125
>gi|358332575|dbj|GAA51207.1| protein bicaudal C homolog 1 [Clonorchis sinensis]
Length = 1433
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLER 317
RE W +K E++E + L++ ++ A GP + P+N ++D+ G I NKEERL+R
Sbjct: 1143 REVWRTQKAKEMEEAQKAGNARRLFQLIR-ATGPRKPPVNETVKDRKGKTILNKEERLDR 1201
Query: 318 WREHFQHVFN-QQTTVNLE-GIEIDPITDNLPNDERPTENE 356
W E+F+ + +LE +E++P T N+ E PT +E
Sbjct: 1202 WAEYFEQQLSWPPAAPHLERTVEVEPWTLNV---EPPTASE 1239
>gi|76154385|gb|AAX25872.2| SJCHGC09318 protein [Schistosoma japonicum]
Length = 513
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
E ++ + K R +R RE+WW K E+++ A +T LYR ++ + I +
Sbjct: 116 ERKQIKSKLSRSLRNDREQWWATKAKEMEKAAALGNTRQLYRLIRETGIKKSRISETISE 175
Query: 303 KNGNKISNKEERLERWREHFQHVFN 327
K+ I ++ RLERW EHF+ F+
Sbjct: 176 KDDTVICSQPRRLERWAEHFKEQFS 200
>gi|358336677|dbj|GAA55136.1| folliculin [Clonorchis sinensis]
Length = 494
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 267 INELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLERWREHFQHV 325
+ E Q+ N + L R A GP + P++ I+D+NG ISNKEERL+RW E+ +
Sbjct: 1 MEEAQKSGNARRLFQLIR----ATGPRKPPVSETIKDRNGVTISNKEERLDRWAEYIE-- 54
Query: 326 FNQQTTVNLEGIEIDPITDNLP---NDERPTENEIM 358
QQ + G ++P D P N E PT +EI
Sbjct: 55 --QQLSWPPAGAHLEPTGDVEPWTVNVEPPTASEIF 88
>gi|76154392|gb|AAX25881.2| SJCHGC09145 protein [Schistosoma japonicum]
Length = 367
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 209 VSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKIN 268
+S +E++D Q + + SE E + ++ + K + +R RE+WW K
Sbjct: 25 ISAASAELIDTRQHIPSGSEHDE-----------QRRQLKHKLIKSLRNDREQWWVAKAK 73
Query: 269 ELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLERWREHFQHVF 326
E+++ A ++ L+R +K IR P I +K+G+ I + RL+RW EHF+ F
Sbjct: 74 EMEKAAAIGNSRQLFRLIKET--GIRNPTVSETICEKDGSIIHCQSRRLDRWAEHFREQF 131
Query: 327 NQQTTVNL 334
N T +L
Sbjct: 132 NWPTASSL 139
>gi|2736044|gb|AAB94039.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 488
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 11 DSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
DS SAL+++ +P ++I R I + + W H G GNE +DR AKEA
Sbjct: 312 DSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKGHAGQAGNEMADRAAKEA 371
Query: 70 LSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
+ S V P+++ K +K + L W T W
Sbjct: 372 VISGQRYVMPRPVSWVKALIKKETLREWATRWAG 405
>gi|358341833|dbj|GAA49414.1| Rho GTPase-activating protein 39, partial [Clonorchis sinensis]
Length = 1692
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 12/95 (12%)
Query: 267 INELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLERWREHFQHV 325
+ E Q+ N + L R A GP + P++ I+D+NG ISNKEERL+RW E+F+
Sbjct: 1 MEEAQKSGNARRLFQLIR----ATGPQKPPVSETIKDRNGVTISNKEERLDRWAEYFE-- 54
Query: 326 FNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
QQ + G ++P D P N E PT +E+
Sbjct: 55 --QQLSWLPAGAHLEPTGDVEPWTVNVEPPTASEV 87
>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 377
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +AL++I N S Q I+NIL K + S L WVP H GI GNE +D+LA
Sbjct: 144 DSRTALRAIANA-SKQVGGQIIQNILHTTKELRSIGVDLCLQWVPGHSGIKGNEMADQLA 202
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLA-DNKLRQI 112
K++++ N P ++ + ++ W EW + A LR+I
Sbjct: 203 KQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLRKI 249
>gi|443734745|gb|ELU18611.1| hypothetical protein CAPTEDRAFT_216906 [Capitella teleta]
Length = 252
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI--RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ DSLS+LQ+I N +P +I + L+ K I L W PSHVG++GNE +D LA
Sbjct: 180 ATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIY-LVMAWCPSHVGVMGNERADLLA 238
Query: 67 KEALSSNSPSVNT 79
KEALS + ++ +
Sbjct: 239 KEALSFTTCTIRS 251
>gi|358341321|dbj|GAA49029.1| tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation
protein, partial [Clonorchis sinensis]
Length = 1082
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + VR RE WW +K E +E + L++ + A GP + P++ I+D+NG
Sbjct: 897 RRQVKVSVRVDREVWWTRKAKEAEEAQKAGNARRLFQ-LIHATGPRKSPVSETIKDRNGE 955
Query: 307 KISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
+ N ERL RW E+F+ +Q G ++P D P N E PT +E+
Sbjct: 956 NVLN-NERLNRWTEYFE----KQLRWPPSGTHLEPTADVEPWTVNMEPPTASEV 1004
>gi|427798001|gb|JAA64452.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1259
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q + I + H+ L F W+PSH GI+GNE +DR A
Sbjct: 1037 DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAA 1096
Query: 67 KEALSSNS----PSVNTIPINYFKRFLKSKILSTWN 98
+ A + N+ P T + + + S WN
Sbjct: 1097 RSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1132
>gi|256092104|ref|XP_002581827.1| hypothetical protein [Schistosoma mansoni]
Length = 146
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
E +E R + + +R RE+WW K E+++ A +T L+R +K I
Sbjct: 6 ERKEIRSRLTKSLRNDREQWWATKAKEMEKAAAVGNTRQLFRLIKETGIKKSSVSETISK 65
Query: 303 KNGNKISNKEERLERWREHFQHVFN-QQTTVNL--------EGIEIDPIT 343
K+G I ++ +RLERW EHF+ F+ T L IE+ P+T
Sbjct: 66 KDGTPICSQPKRLERWAEHFKEQFSWPSATAQLPTILKQSERNIEVGPLT 115
>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1672
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +AL++I N S Q I+NIL K + S L WVP H GI GNE +D+LA
Sbjct: 1439 DSRTALRAIANA-SKQVGGQIIQNILHTTKELRSIGVDLCLQWVPGHSGIKGNEMADQLA 1497
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK-LRQI 112
K++++ N P ++ + ++ W EW + A LR+I
Sbjct: 1498 KQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLRKI 1544
>gi|357622282|gb|EHJ73827.1| endonuclease-reverse transcriptase [Danaus plexippus]
Length = 732
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 21/138 (15%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGP---IRKPLNI 299
+Y+ R+ R R R W + Q AN + +Y+ + G +KPL
Sbjct: 367 QYRRIRKSIYRSARHDRRVWAENVADCAQRAANSGNLREMYKATRILTGKRALKKKPL-- 424
Query: 300 IEDKNGNKISNKEERLERWREHFQHVF-------NQQTTVNLEGIEIDPITDNLPNDERP 352
+DK G I+ E +L+RWREHF+ +F T NL + +D D P P
Sbjct: 425 -KDKRGELIATSEGQLQRWREHFEEIFQVSNSPITPTTAANLPAVSLD--IDESP----P 477
Query: 353 TENEIM--LETLIFPKSP 368
TE E++ +++L K+P
Sbjct: 478 TEEEVVKAIQSLKNGKAP 495
>gi|358334806|dbj|GAA53243.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 211
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 244 YQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN- 298
Y AR+ +R++ R+ RE WW K E ++ ++ LY+ ++S GP + ++
Sbjct: 83 YDGARKSLKRQLVKSLRKDRELWWKSKAREREKAFATGNSRALYQPIRS-TGPRKATVSE 141
Query: 299 IIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDERPTENEIM 358
I +K+G+ I +++ RLERW EHF+ F+ + +EI N +RP+E EI
Sbjct: 142 TISEKDGSLIHSQKRRLERWAEHFEEQFSWPPAT--QPVEIMHTGQWNVNLDRPSEEEIK 199
Query: 359 L 359
+
Sbjct: 200 I 200
>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 765
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +AL++I N S Q ++NIL K + S L WVP H GI GNE +D+LA
Sbjct: 532 DSRTALRAIANS-SKQVGGQIVQNILHTTKELRSIGVDLCLQWVPGHSGIKGNEMADQLA 590
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK-LRQI 112
K++++ N P ++ + ++ W EW + A LR+I
Sbjct: 591 KQSINPNPTRGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLRKI 637
>gi|427783069|gb|JAA56986.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNILV----KNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + P Q E+R +L K H+ F W+PSH G++GNE +D
Sbjct: 256 DSKAALQSLLSALRHGPYEQLVFEVRYLLHTSIEKGHHV---KFQWLPSHCGVIGNEHAD 312
Query: 64 RLAKEALSSNSPSVNTIPINYFK-----RFLKSKI-LSTWNT 99
A+ AL + ++ TIP++ R + KI STWNT
Sbjct: 313 NAARSALQGD--TLETIPLSRTDAARQLRVVAQKITFSTWNT 352
>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1671
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +AL++I N S Q ++NIL K + S L WVP H GI GNE +D+LA
Sbjct: 1438 DSRAALRAIANS-SKQVGGQIVQNILHTTKQLKSIGVDLCLQWVPGHSGIKGNEMADQLA 1496
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK-LRQI 112
K++++ N P ++ + ++ W EW + A LR+I
Sbjct: 1497 KQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLRKI 1543
>gi|358376822|dbj|GAA93326.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 815
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ I+N + S I Q I + + K + L WVP H G GNE +DRLAK
Sbjct: 588 DSMSALQVIKNSWNKSGQCIIQAIHHSAGELKARGIPLRLQWVPGHCGDPGNEAADRLAK 647
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+A+ + ++ K +++ KI W EW
Sbjct: 648 DAVGIDKKHPFKHLLSREKGYIRRKIYQEWEQEW 681
>gi|443734398|gb|ELU18400.1| hypothetical protein CAPTEDRAFT_213104 [Capitella teleta]
Length = 330
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLS L+++QN SS I+ + V + + F W+PSH GI GNE +D LAK +L
Sbjct: 216 DSLSVLEAMQNTSSSTVISDIQVALNVAANSNVDVSFLWIPSHCGIQGNEAADALAKASL 275
Query: 71 SSNS 74
SS S
Sbjct: 276 SSQS 279
>gi|443727119|gb|ELU14007.1| hypothetical protein CAPTEDRAFT_217934 [Capitella teleta]
Length = 664
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
+ DSLS+LQ+I N +P +I + +K + L W PSHVG++GNE +D LAK
Sbjct: 280 ATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIDLVMAWCPSHVGVMGNERADLLAK 339
Query: 68 EALS 71
EALS
Sbjct: 340 EALS 343
>gi|254587308|emb|CAX83711.1| endonuclease-reverse transcriptase [Schistosoma japonicum]
Length = 918
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
E ++ + K R +R RE+WW K E+++ A +T LYR ++ + I +
Sbjct: 285 ERKQIKSKLSRSLRNDREQWWATKAKEMEKAAALGNTRQLYRLIRETGIKKSRISETISE 344
Query: 303 KNGNKISNKEERLERWREHFQHVFN 327
K+ I ++ RLERW EHF+ F+
Sbjct: 345 KDDTVICSQPRRLERWAEHFKEQFS 369
>gi|358255782|dbj|GAA57431.1| hypothetical protein CLF_112710 [Clonorchis sinensis]
Length = 116
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 253 REVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNK 311
+ +RR RE WW K+ E+++ ++ LY+ ++S GP + ++ + +K+G+ I ++
Sbjct: 27 KSLRRYRELWWKSKVREMEKAFATGNSRALYQLVRS-TGPRKATVSETVSEKDGSLIHSQ 85
Query: 312 EERLERWREHFQHVFN 327
+ RLERW EHF+ F+
Sbjct: 86 KRRLERWAEHFEEQFS 101
>gi|357630243|gb|EHJ78503.1| endonuclease-reverse transcriptase [Danaus plexippus]
Length = 830
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 220 VQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDT 279
+Q + T EA + L + +Y+ R+ R R R W + Q AN +
Sbjct: 204 LQILATIDEAVREDLRV------QYRRIRKSIYRSARHDRRVWAENVADCAQRAANSGNL 257
Query: 280 YNLYRGMKSAVGP---IRKPLNIIEDKNGNKISNKEERLERWREHFQHVF-------NQQ 329
+Y+ + G +KPL +DK G I+ E +L+RWREHF+ +F
Sbjct: 258 REMYKATRILTGKRALKKKPL---KDKRGELIATSEGQLQRWREHFEEIFQVSNSPITPT 314
Query: 330 TTVNLEGIEIDPITDNLPNDERPTENEIM--LETLIFPKSP 368
T NL + +D D P PTE E++ +++L K+P
Sbjct: 315 TAANLPAVSLD--IDESP----PTEEEVVKAIQSLKNGKAP 349
>gi|358254365|dbj|GAA54754.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 201
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 260 EEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLERW 318
E WW + E++E + L++ ++ A GP + P++ I+D+NG ISNKEERLE+W
Sbjct: 120 EVWWTQNAKEMEEAQKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGVNISNKEERLEQW 178
Query: 319 REHFQHVFNQQTTVNL 334
E+ + + +Q + L
Sbjct: 179 AEYLEQQYFEQNQLAL 194
>gi|443691275|gb|ELT93184.1| hypothetical protein CAPTEDRAFT_223991 [Capitella teleta]
Length = 391
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNL 104
F W PS+VGI+G+E +DRL K+AL V +P+++ FK + S + S W +EW +
Sbjct: 277 FLWCPSYVGILGDEVADRLTKQALVM---PVTDLPLSHSDFKYPICSIVKSFWQSEWDDE 333
Query: 105 ADNKLRQIK 113
+NKL ++
Sbjct: 334 TENKLHSVQ 342
>gi|353244976|emb|CCA76093.1| hypothetical protein PIIN_10093 [Piriformospora indica DSM 11827]
Length = 1335
Score = 52.0 bits (123), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 11 DSLSALQSI--QNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
D+ SA++SI FSS +Q R+ L N S+ WVP H GI GNE +D
Sbjct: 1107 DNSSAVRSIPIARPFSSQDASQRFIEAARSFLEGNPRA-SIMIQWVPGHTGIPGNERADE 1165
Query: 65 LAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRP 118
+AK A S P+ T NY R ++K+ W +W + D + R ++ P
Sbjct: 1166 IAKAACSLAPPNPRTTLSNYL-RTARNKLSEDWTNQWTS-TDRRSRYAIADRLP 1217
>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
[Acyrthosiphon pisum]
Length = 164
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+ + + W P H GI GNE++D A +A SS ++P +N K+ +K + W +W
Sbjct: 3 MDICYMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQW 62
Query: 102 VNLADNKLRQIKEEKRPW-NPSLHESRESNSARL 134
+N KL QIK + W NP L+ E+ RL
Sbjct: 63 IN-QHTKLNQIKNNIQTWKNPGLNRKEETILNRL 95
>gi|358376848|dbj|GAA93341.1| transposon I factor, partial [Aspergillus kawachii IFO 4308]
Length = 595
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVK-----NKHILSLHFTWVPSHVGIVGNEESDRL 65
DS+SAL +IQ N Q+I +++ H +++ WVP H I+GN+ +DRL
Sbjct: 363 DSMSALLAIQK--PGNKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRL 420
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
AKEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 421 AKEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 468
>gi|358376861|dbj|GAA93349.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 362
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVK-----NKHILSLHFTWVPSHVGIVGNEESDRL 65
DS+SAL +IQ N Q+I +++ H +++ WVP H I+GN+ +DRL
Sbjct: 130 DSMSALLAIQKP--GNKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRL 187
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
AKEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 188 AKEAAIPGRTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 235
>gi|358338657|dbj|GAA57158.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 181
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + VR RE WW +K E+++ N + L+ ++S GP RKPL I D+NG
Sbjct: 109 RRQVKLSVRANREAWWTRKAEEMEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNG 166
Query: 306 NKISNKEERLERW 318
+ I NK ERL RW
Sbjct: 167 SLICNKAERLPRW 179
>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I N + S I Q I + K + L WVP H G GNE +DRLAK
Sbjct: 1359 DSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAK 1418
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
EA+ ++ K +++ +I W EW
Sbjct: 1419 EAVGLEKKHPFRHLLSREKGYIRDRISKEWEQEW 1452
>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I N + S I Q I + K + L WVP H G GNE +DRLAK
Sbjct: 1359 DSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAK 1418
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
EA+ ++ K +++ +I W EW
Sbjct: 1419 EAVGLEKKHPFRHLLSREKGYIRDRISKEWEQEW 1452
>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1301
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I N + S I Q I + K + L WVP H G GNE +DRLAK
Sbjct: 1053 DSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAK 1112
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
EA+ ++ K +++ +I W EW
Sbjct: 1113 EAVGLEKKHPFRHLLSREKGYIRDRISKEWEQEW 1146
>gi|358332746|dbj|GAA36586.2| SKI family transcriptional corepressor 2 [Clonorchis sinensis]
Length = 785
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLE 316
RE WWN+K E +E N + + L+ + SA RK L I+ ++NG+ ISN+ ERL+
Sbjct: 513 REAWWNRKAQEFEEVQNAGNVHKLFHLILSAGH--RKLLLREILRNRNGSLISNRPERLD 570
Query: 317 RWREHFQHVF 326
RW F+ F
Sbjct: 571 RWARCFEKQF 580
>gi|317031412|ref|XP_003188771.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1653
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 1419 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 1477
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 1478 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 1524
>gi|317031342|ref|XP_003188764.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1016
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 782 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 840
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 841 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 887
>gi|358255168|dbj|GAA56886.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 541
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLER 317
R WW +K E++E ++ L++ ++ GP + P++ I+D+NG ISN EERL+R
Sbjct: 95 RGVWWTQKAKEVEENQKAHNARRLFKLIR-VTGPRKPPVSESIKDRNGVNISNGEERLDR 153
Query: 318 WREHF 322
W E+F
Sbjct: 154 WPEYF 158
>gi|317031356|ref|XP_001393251.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1677
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 1456 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 1514
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 1515 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 1561
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1035
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 11 DSLSALQSIQN-EFSSNPIAQEIRNILVK----NKHILSLHFTWVPSHVGIVGNEESDRL 65
DSLS +++++ + NP+ + ++L +H++ WVP H I GN +D+L
Sbjct: 858 DSLSVVKALKTLKKHKNPVLASLYSLLCTVYALKQHVV---VCWVPGHREIQGNVLADQL 914
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHE 125
A A + + + IP K LK K+ + W + W NKL IK + W P
Sbjct: 915 AASAHENAAHTFLAIPALDLKPLLKRKLRAYWQSIWDTQTQNKLHAIKPQLGEWPP---- 970
Query: 126 SRESNSARLPQVSLAELKV 144
++ +R +++L L+
Sbjct: 971 ---ASKSRRTEITLTRLRT 986
>gi|443699889|gb|ELT99143.1| hypothetical protein CAPTEDRAFT_215477 [Capitella teleta]
Length = 347
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEI--RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DSLS+LQ++ N ++P +I + ++ N+ L W PSHVG+VGN +D LAK+
Sbjct: 196 DSLSSLQALGNFNITHPYVFKILEKYTILYNRG-FDLVMLWCPSHVGVVGNARADLLAKK 254
Query: 69 ALSSNSPSVNTIPINYFK 86
ALS + +V IP + FK
Sbjct: 255 ALSFTACNVR-IPASDFK 271
>gi|134077756|emb|CAK45797.1| unnamed protein product [Aspergillus niger]
Length = 1536
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 1302 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 1360
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 1361 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 1407
>gi|134077781|emb|CAK45821.1| unnamed protein product [Aspergillus niger]
Length = 1644
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 1410 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 1468
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 1469 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 1515
>gi|443691945|gb|ELT93673.1| hypothetical protein CAPTEDRAFT_224783 [Capitella teleta]
Length = 354
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEES 62
N SLS+L ++ N ++P I N++ K K ++ F W PSH+GI+GNE +
Sbjct: 28 NICSYSLSSLTALSNCDITHPYLLSILSKQNNLVRKGKLVV---FVWCPSHLGILGNEVA 84
Query: 63 DRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTW 97
DRLAK+AL + +P +K ++S + S W
Sbjct: 85 DRLAKQALVMPVTKL-PLPQTDYKSPIRSYVKSLW 118
>gi|358376045|dbj|GAA92616.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 861
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 629 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLA 687
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 688 KEAAIPGKTHPFSPLLSRERAYIRHGILTQWEKEWKESRDGGHLRKI 734
>gi|134077855|emb|CAK40096.1| unnamed protein product [Aspergillus niger]
Length = 1244
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLA 66
DS SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLA
Sbjct: 1010 DSTSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLA 1068
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLAD-NKLRQI 112
KEA + ++ + +++ IL+ W EW D LR+I
Sbjct: 1069 KEAAIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKI 1115
>gi|294566523|gb|ADF18552.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 977
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 244 YQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDK 303
Y++ ++E+ + + ++++ K L++ K+D++N ++ +K VG RK +N + D
Sbjct: 379 YKQIDVTIRKEIAKAKNDYYSNKCAHLEDLLRKHDSFNAHKHIKEMVGHRRKSMNTLTDA 438
Query: 304 NGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDERPTENEIMLETLI 363
GN I + + + W ++ +F + I PITD +E L+
Sbjct: 439 GGNLILDTDGKKRVWCDYVAEMFADSSR------NISPITDRTGPAMLRSEVLRALKAAK 492
Query: 364 FPKSPIKMNFPFLVLCLLAEEH 385
K P N P +L LL E+
Sbjct: 493 TGKLPGPDNIPIEILKLLEEDQ 514
>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1045
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 11 DSLSALQSIQNE----FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS SALQ++ N + + +A + + + S+ F W+PSHVGI GNEE+D LA
Sbjct: 838 DSKSALQTLANPRRAGLTGSLLAAKYQALAASGA---SVSFHWLPSHVGIAGNEEADTLA 894
Query: 67 KEALSSNSPSVNTIPI-NYFKRFLKSKILST 96
K A +P + +Y + LK +L+
Sbjct: 895 KAAHQPGTPYTRAVAARDYTQARLKRLLLTV 925
>gi|294566525|gb|ADF18553.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 989
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 239 ARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN 298
++K Y + + QR RR R+E N E++ A+K T +L+ +K G +
Sbjct: 402 SQKERYNQLHAEIQRSTRRDRDEHINNMCEEIEGHADKVQTKDLFLKVKQLTGVFKPKKW 461
Query: 299 IIEDKNGNKISNKEERLERWREHFQHVFNQQ 329
IIED GN ++ E LERWR + ++ +
Sbjct: 462 IIEDSRGNTLTEMEHVLERWRNYCYDLYRDE 492
>gi|67625701|tpe|CAJ00236.1| TPA: endonuclease-reverse transcriptase [Schistosoma mansoni]
Length = 992
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
EY EA ++ +R +R + ++ ++ A + + LY K G R+P +++
Sbjct: 379 EYTEANKQVKRSIRTDKRKYVEDLAMTAEKAAREGNMRQLYDTTKKLAGNYRQPERPVKN 438
Query: 303 KNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDERP 352
K G I++ EE+ RW EHF+ + N+ +N IE P +LP D P
Sbjct: 439 KEGKVITDIEEQRNRWVEHFKELLNRPAPLNPPNIEAAPT--DLPIDIGP 486
>gi|427798837|gb|JAA64870.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1174
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q + I + H+ L F W+PSH GI+GNE +DR A
Sbjct: 998 DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAA 1057
Query: 67 KEALSSNS----PSVNTIPINYFKRFLKSKILSTWN 98
+ A + N+ P T + + + S WN
Sbjct: 1058 RSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 427
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHIL-----SLHFTWVPSHVGIVGNEESDRL 65
DS SA+Q+I+N N Q + + ++ + L LH W+P H +GN+ +DRL
Sbjct: 182 DSKSAIQAIKN--PRNTSGQRVIEAINQSAYELDSRGIPLHLQWIPGHCDNLGNDAADRL 239
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
AK A+ P++ K ++ +IL W EW
Sbjct: 240 AKAAVGPTKTHPFCRPVSREKAAIQRQILKEWEDEW 275
>gi|427798201|gb|JAA64552.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1128
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q + I + H+ L F W+PSH GI+GNE +DR A
Sbjct: 998 DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAA 1057
Query: 67 KEALSSNS----PSVNTIPINYFKRFLKSKILSTWN 98
+ A + N+ P T + + + S WN
Sbjct: 1058 RSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|358376676|dbj|GAA93209.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 378
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVK-NKHILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ I+N + S I Q I + + L WVP H G GNE +DRLAK
Sbjct: 130 DSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLQLQWVPGHCGNPGNEAADRLAK 189
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+ ++ KR+++ I W+ EW
Sbjct: 190 ATVGVKKRHPFRHLLSREKRYIRKNISDEWHQEW 223
>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]
Length = 233
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
W PSH+G+VGNE +D LAKEALS + V IP F S W W +NK
Sbjct: 85 WCPSHIGVVGNERADLLAKEALSFTACDVR-IPAFDFNSVAYSFYRDKWQALWSLEQNNK 143
Query: 109 LRQIK 113
L ++
Sbjct: 144 LHSVQ 148
>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
Length = 2000
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 11 DSLSALQSIQNEFSSNP---IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +A+Q+I+N S+ + + I+ + + + F W+P+HVG+ GNEE+DR+AK
Sbjct: 1652 DNQAAIQAIRNPKHSSGQYILLEAIQALDMLRNFGWEVQFRWIPAHVGVPGNEEADRMAK 1711
Query: 68 EALSSNSPSVN------TIPINYFKRFLKSKILST----WNTEWVN 103
EA + P +N T P+ KS I W T W N
Sbjct: 1712 EATGVD-PGINIERLPETDPLRILTATTKSTIRQRMKHEWETSWEN 1756
>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 1 MATMLQNSSKDSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIV 57
+AT+L S +SALQ+IQ S I I + K H +++ W+P H
Sbjct: 1001 LATILSGS----MSALQAIQTPGNKSGQRIIHAILEAAINTKTHGVTIRLQWIPGHCAAP 1056
Query: 58 GNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
GN+ +DRLAKEA ++ K F++ I W EW
Sbjct: 1057 GNDSADRLAKEAAIPGKTHPFCPLLSREKAFVRKNIYVQWEKEW 1100
>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1618
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVK-NKHILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ I+N + S I Q I + + L WVP H G GNE +DRLAK
Sbjct: 1370 DSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAK 1429
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW-VNLADNKLRQIKEEKRPWNPS--LH 124
+ ++ KR+++ I W+ EW + LR+I + P N + L+
Sbjct: 1430 ATVGGEKRHPFRHLLSREKRYIRRNISDEWHQEWRASRNGGHLRRI-DRALPANRTRRLY 1488
Query: 125 ESRESNSARLPQVSLAELKVIQETLGDLERQGDLDLDLCDSWRNLAESQEANDDGDLSSH 184
S N A L L +L+ L +Q R L + ++ +
Sbjct: 1489 GSLPRNRAYL----LTQLRTGHSWLATHGKQ-----------RGLRDDEKCECGATETVV 1533
Query: 185 HVTLDLANRIVQSYTGIQADLKYGVSGILSEIMDLV 220
HV +D +G++ L+ + G + I D++
Sbjct: 1534 HVLIDCPR-----LSGLRQALRRKIGGAFNNISDML 1564
>gi|358340437|dbj|GAA48328.1| hypothetical protein CLF_101473, partial [Clonorchis sinensis]
Length = 103
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 247 ARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIE 301
AR+ +R++ R+ RE WW K E+++ ++ LY+ ++S GP + ++ I
Sbjct: 16 ARKSLKRQIVKSLRKDRELWWKSKAREMEKAFATGNSRALYQLIRS-TGPRKATVSETIS 74
Query: 302 DKNGNKISNKEERLERWREHFQHVFN 327
+K+G+ I +++ RLERW EHF+ F+
Sbjct: 75 EKDGSLIHSQKRRLERWAEHFEEQFS 100
>gi|343428557|emb|CBQ72087.1| related to Reverse transcriptase [Sporisorium reilianum SRZ2]
Length = 2266
Score = 49.7 bits (117), Expect = 0.003, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKN-KHIL------SLHFTWVPSHVGIVGNEESD 63
DS S+LQ + +S + A + R +++ H L S+HF WVP HVG+ GNE +D
Sbjct: 2018 DSASSLQRLNCPWSQDRRAGQRRCAIIRTIVHTLLRLGCPSVHFVWVPGHVGVAGNELAD 2077
Query: 64 RLAKE-ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
RLA+ A N + T + + ++ + T W L ++ N +
Sbjct: 2078 RLARRGAALQNQATDATANLGPVRARIREASQALRQTRWNKEPSRHLHEVSPNVGKSNAA 2137
Query: 123 LHESR 127
++E R
Sbjct: 2138 IYEVR 2142
>gi|358336248|dbj|GAA54800.1| hypothetical protein CLF_105465 [Clonorchis sinensis]
Length = 521
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + VR RE W +K E++E + L++ ++ A GP + P++ I+ +NG
Sbjct: 181 RRQVKVSVRADREVKWTQKAKEMEEAQKASSALILFQLIR-ATGPRKPPVSETIKHQNGT 239
Query: 307 KISNKEERLERWREHFQH 324
I NKEE+L+RW E+F+
Sbjct: 240 TIWNKEEQLDRWAEYFEQ 257
>gi|443706301|gb|ELU02423.1| hypothetical protein CAPTEDRAFT_206267 [Capitella teleta]
Length = 357
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI--RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ +SLS+LQ++ N +P +I + L+ K I L +W PSHVG++GNE +D LA
Sbjct: 280 ATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGI-DLVISWCPSHVGVMGNERADLLA 338
Query: 67 KEALS 71
KEALS
Sbjct: 339 KEALS 343
>gi|358255307|dbj|GAA57019.1| transcriptional regulator ATRX [Clonorchis sinensis]
Length = 2392
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 247 ARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKN 304
R++ + V+ R+ WW +K E++E + L++ + GP RKPL ++ +N
Sbjct: 23 TRRQVKMSVQADRDVWWIQKAKEMEEARKVGNARRLFQ-LVHGTGP-RKPLVGETMKGRN 80
Query: 305 GNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDP 341
G SNKEERL++W E+F+ QQ + G ++P
Sbjct: 81 GVNTSNKEERLDQWAEYFE----QQLSWRPSGTHLEP 113
>gi|358253291|dbj|GAA52761.1| histone H3 [Clonorchis sinensis]
Length = 867
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 238 VARKREYQEARQKCQREV----RRIREEWWNKKINELQE-FANKNDTYNLYRGMKSAVGP 292
+A EY+ AR+ +R++ R+ RE WW K E+++ FA +N + LY+ ++S GP
Sbjct: 8 IAAGNEYEGARKSLKRQIVKNLRKERELWWTSKAREMKKAFATRN-SRALYQLIRS-TGP 65
Query: 293 IRKPLNIIEDKNGNKISNKEERLERWREHFQHVFN 327
+ ++ I +++ RLERW EHF+ +F
Sbjct: 66 RKTTVS------ETIIQSQKRRLERWAEHFEELFG 94
>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
Length = 1288
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 27/216 (12%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVK-NKHILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ I+N + S I Q I + + L WVP H G GNE +DRLAK
Sbjct: 1040 DSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAK 1099
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW-VNLADNKLRQIKEEKRPWNPS--LH 124
+ ++ KR+++ I W+ EW + LR+I + P N + L+
Sbjct: 1100 ATVGGEKRHPFRHLLSREKRYIRRNISDEWHQEWRASRNGGHLRRI-DRALPANRTRRLY 1158
Query: 125 ESRESNSARLPQVSLAELKVIQETLGDLERQGDLDLDLCDSWRNLAESQEANDDGDLSSH 184
S N A L L +L+ L +Q R L + ++ +
Sbjct: 1159 GSLPRNRAYL----LTQLRTGHSWLATHGKQ-----------RGLRDDEKCECGATETVV 1203
Query: 185 HVTLDLANRIVQSYTGIQADLKYGVSGILSEIMDLV 220
HV +D +G++ L+ + G + I D++
Sbjct: 1204 HVLIDCPR-----LSGLRQALRRKIGGAFNNISDML 1234
>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 1139
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHIL-----SLHFTWVPSHVGIVGNEESDRL 65
DS SALQ+I+N SN Q + + ++ + L SL W+P H GN+ +D L
Sbjct: 894 DSKSALQAIRN--PSNKSGQRVIQAINQSAYELDSRGISLRLQWIPGHCDDPGNDAADHL 951
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW-VNLADNKLRQIKEEKRPWNPSLH 124
AK A+ + P++ K ++ +IL W EW + LR+I PS+H
Sbjct: 952 AKTAVGLDKTHPFCRPVSREKAAIRKQILKEWEDEWKASRKGAHLRRIDSTL----PSIH 1007
Query: 125 ESR 127
R
Sbjct: 1008 TRR 1010
>gi|443686560|gb|ELT89792.1| hypothetical protein CAPTEDRAFT_191632 [Capitella teleta]
Length = 257
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI--RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ +SLS+LQ++ N +P +I + L+ K I L +W PSHVG++GNE +D LA
Sbjct: 180 ATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGI-DLVISWCPSHVGVMGNERADLLA 238
Query: 67 KEALS 71
KEALS
Sbjct: 239 KEALS 243
>gi|357610240|gb|EHJ66888.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 476
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DS +A+ +IQN +++P+ +I + + S+ F WV +HVGIVGNE +D AK A
Sbjct: 259 DSSAAILAIQNRSNTHPLVAKIHSTVHHTS--GSIEFAWVKAHVGIVGNEAADTAAKRAA 316
Query: 71 S-SNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+P PI + K + +S S W + +
Sbjct: 317 KLHKAPDYTQFPITFIKHYTRSLHASVWQSRY 348
>gi|260832360|ref|XP_002611125.1| hypothetical protein BRAFLDRAFT_88477 [Branchiostoma floridae]
gi|229296496|gb|EEN67135.1| hypothetical protein BRAFLDRAFT_88477 [Branchiostoma floridae]
Length = 332
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 238 VARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL 297
A+K Y + + Q ++R +++ W + K +E+Q+FA++N+T Y +K+ GP R
Sbjct: 108 AAKKAVYNAIKNRLQAKLREMQDSWLSGKADEIQKFADQNNTKCFYDALKAIYGPPRSGT 167
Query: 298 NIIEDKNGNK-ISNKEERLER 317
+ + +G +++K++ L R
Sbjct: 168 SPLLAADGATLLTDKDKILAR 188
>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1193
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I N S I Q +R + K + L WVP H G GNE +DRLAK
Sbjct: 961 DSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPLRLQWVPGHCGDPGNEAADRLAK 1020
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
EA+ + ++ K F+ ++I W W
Sbjct: 1021 EAVGLDKEHPFQHLLSREKGFIHNRIQEEWERGW 1054
>gi|358340397|dbj|GAA48298.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 79
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R + Q V+ RE WW +K E++E + L++ M A GP + P++ I+D+ G
Sbjct: 7 RSQVQVSVQADREVWWTQKAKEMEEAQKSGNARRLFQ-MIGATGPRKPPVSETIKDRIGL 65
Query: 307 KISNKEERLERWRE 320
I NKEERL+RW E
Sbjct: 66 TIWNKEERLDRWAE 79
>gi|443723447|gb|ELU11866.1| hypothetical protein CAPTEDRAFT_187673 [Capitella teleta]
Length = 225
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 11 DSLSALQSIQNEFSSNP----IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
D+LSA+ +I +P + I++I + K ++ F W P HVGI GNE +D LA
Sbjct: 139 DALSAIMAIHGMDVRHPYVLKVLYAIKSIYQQEKIVV---FMWCPPHVGIPGNEMADTLA 195
Query: 67 KEALSSN 73
KEALSS
Sbjct: 196 KEALSST 202
>gi|358341551|dbj|GAA49196.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 170
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 243 EYQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN 298
EY AR+ +R++ R+ RE W K E+++ ++ LY+ ++S GP + ++
Sbjct: 82 EYDGARKSLKRQIVKSLRKDREFWRKSKAREMEKAFATGNSRALYQLIRS-TGPRKATVS 140
Query: 299 -IIEDKNGNKISNKEERLERWREHFQHVFN 327
I +K+G+ I +++ RLERW EHF+ F+
Sbjct: 141 ETISEKHGSLIHSRKRRLERWAEHFEEHFS 170
>gi|427779363|gb|JAA55133.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 417
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNILV----KNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + P Q E+R++L K H+ F W+PSH G++GNE +D
Sbjct: 256 DSKAALQSLLSALRHGPYEQLVFEVRHLLHTSIEKGHHV---KFQWLPSHCGVIGNEHAD 312
Query: 64 RLAKEALSSNSPSVNTIPIN 83
A+ AL + + TIP++
Sbjct: 313 SAARSALQGD--RLETIPLS 330
>gi|427783055|gb|JAA56979.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 485
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNILV----KNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + P Q EIR +L K H+ F W+PSH G++GNE +D
Sbjct: 256 DSKAALQSMLSALRRGPYEQLVFEIRGLLHASHEKGHHVT---FQWLPSHCGVIGNEHAD 312
Query: 64 RLAKEALSSNSPSVNTIPIN 83
A+ AL + +TIP++
Sbjct: 313 NAARAALEDTTQE-DTIPLS 331
>gi|358376084|dbj|GAA92654.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 231
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 13 LSALQSIQNEFSSNPIAQEIRNILVKNK----HILSLHFTWVPSHVGIVGNEESDRLAKE 68
+SAL +IQ S + Q I IL K H +++ WVP H I+GN+ +DRLAKE
Sbjct: 1 MSALLAIQKPGSKSG-QQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKE 59
Query: 69 ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADN-KLRQI 112
A + ++ + +++ IL+ W EW D+ LR+I
Sbjct: 60 AAIFGKTHPFSPLLSRERAYIRQGILTQWEQEWKESRDSGHLRKI 104
>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus]
Length = 1133
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 11 DSLSALQSI-QNEFSSN---PIAQEIRNILVKNKHI-LSLHFTWVPSHVGIVGNEESDRL 65
DS S LQ+I +N F S P +I++IL + + + + W+PSH GI GNE D
Sbjct: 927 DSKSCLQAIARNPFISKHNYPYILKIKDILFRCQSSNIQVRLAWIPSHSGIHGNETVDYY 986
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEK-----RPWN 120
AK+A ++ + N K + S+W W+ + +K + + + RPW
Sbjct: 987 AKDATNTGCMDHFGVYPNDLIPIAKQRFFSSWTQYWLKTSRSKGKYYADVQSLIPFRPWF 1046
Query: 121 P---SLHESRESNSARL------PQVSLAELKVIQETLGD 151
+LH+ S RL V LA+L++ +L +
Sbjct: 1047 CNFKNLHKRVSSIICRLRLGHACTPVHLAKLRIKDSSLCE 1086
>gi|298204351|gb|ADI61824.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 1061
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 94/211 (44%), Gaps = 17/211 (8%)
Query: 135 PQVSLAELKVIQETLGDLERQGDLDLDLCDSWRNLAESQEANDD-GDLSSHHVTLDLANR 193
P LA L + E L D E + + L ++ E+ + + D G LSSH +D A+
Sbjct: 268 PMKKLASLDI--EKLRDPEVRKNYAEALSKKLLSVNETGDVDADWGTLSSH--IMDTASI 323
Query: 194 IVQSYTGIQADLKYGVSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQEARQKCQR 253
+ + D G G+L +D +D++ + + A E ++
Sbjct: 324 ALGRKSRRNEDWFDGNDGVLRAALDKHRDLLRQHRRRKGSVAAVKASDLELRKLS----- 378
Query: 254 EVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGP---IRKPLNIIEDKNGNKISN 310
R+I+++WW K N +Q + N Y + +G + PL ++ ++ +++
Sbjct: 379 --RQIKDKWWQDKTNHMQWLTDTNQLGEFYSEARKLMGTSNHAKVPLRSLDSRH--LLTS 434
Query: 311 KEERLERWREHFQHVFNQQTTVNLEGIEIDP 341
KE+ L+RW EHF + N + +L+ I + P
Sbjct: 435 KEDVLKRWAEHFHALLNVDRSADLQSIALMP 465
>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
Length = 1219
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLSA+ SIQN +++ IR+++ + H + W+P H GI GNE +D+ AK A
Sbjct: 1011 DSLSAVDSIQNTNNNSFYPSRIRSLITQ--HAPKIKIMWIPGHSGIKGNELADQAAKSAS 1068
Query: 71 SSN---SPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
S +P++NT I K+ LK+ + + +N + PW S++ +
Sbjct: 1069 SMPLILTPNINTTDI---KKHLKADLATKQKEHIINCS------------PWYQSINTNT 1113
Query: 128 ESNSARLPQ-----VSLAELKVIQETLG 150
L Q L ++K+I+ LG
Sbjct: 1114 SHPCDYLKQSHPNWTRLDQIKIIRLRLG 1141
>gi|242822065|ref|XP_002487807.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712728|gb|EED12153.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 128
Score = 48.5 bits (114), Expect = 0.006, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
M + + K ++ + Q + F + A +R L K S+ WVP H I NE
Sbjct: 3 MLAVAMSDFKHTIRSSQEVFEFFRTLAAAWPLRERLPHTKS-GSIQIRWVPGHAEIPKNE 61
Query: 61 ESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWN 120
+D AKE +S SPS + KR+ K++ LST T W ++A + ++ P
Sbjct: 62 AADLAAKEGAASISPSPHKSSYASLKRYAKTQSLSTAQTRWQSVAPQTYQDLEITTSPKC 121
Query: 121 P 121
P
Sbjct: 122 P 122
>gi|358376063|dbj|GAA92634.1| hypothetical protein AKAW_10748 [Aspergillus kawachii IFO 4308]
Length = 399
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+ L WVP H G GNE +DRLAKEA+ + ++ K F+++ I S W EW
Sbjct: 186 IPLRLQWVPGHCGNPGNETADRLAKEAVGAEKKHPFQHLLSREKAFIRNTIKSEWEQEW 244
>gi|427778015|gb|JAA54459.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI--LVKNKHILSLH--FTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q + I L+ H H F W+PSH G++GNE +D A
Sbjct: 254 DSKAALQSVLSALRRGPYEQLVFEIRYLIHTSHEKGHHVTFQWLPSHCGVIGNEHADNAA 313
Query: 67 KEALSSNSPSVNTIPIN 83
+ AL +TIP++
Sbjct: 314 RAALEGTQE--DTIPLS 328
>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 334
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 1 MATMLQNSSKDSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIV 57
+AT+L DS+SALQ+IQ S I I + +K H +++ W+P H
Sbjct: 86 LATIL----SDSMSALQAIQTPGNKSGQRIIHAILQAAINSKTHGVTIRLQWIPGHCAAP 141
Query: 58 GNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTW 97
GN+ +DRLAKEA ++ K F++ I W
Sbjct: 142 GNDSADRLAKEAAIPGKTHPFCPLLSREKAFVRKNIYDQW 181
>gi|427791585|gb|JAA61244.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1099
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 11 DSLSALQSIQNEFSSNPIA-QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
D SA+Q + +N Q + ++ K ++ F W+PSHVG+ GNE +D LA EA
Sbjct: 897 DCKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEA 956
Query: 70 LSSN----SPSVNTIPINYFKRFLKSKILSTWNT 99
LS +P+ +P K+ ++S S WN+
Sbjct: 957 LSRQPTIRAPTNQQLP----KQTIQSHFRSLWNS 986
>gi|357607528|gb|EHJ65566.1| endonuclease-reverse transcriptase [Danaus plexippus]
Length = 814
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 220 VQDVVTSSEAGEDGLELPVARKRE--YQEARQKCQREVRRIREEWWNKKINELQEFANKN 277
+Q + T EA + L+L R R+ Y+ AR RR+R E + Q AN
Sbjct: 184 LQILATIDEAVREDLKLQYRRIRKCIYRSARHD-----RRVRAE---NVADCAQRAANSG 235
Query: 278 DTYNLYRGMKSAVGP---IRKPLNIIEDKNGNKISNKEERLERWREHFQHVF-------N 327
+ +Y+ + G +KPL +DK G I E +L RWREHF +F
Sbjct: 236 NLREMYKATRILTGKRALKKKPL---KDKRGELIVTSEGQLHRWREHFVEIFQVPNSPIT 292
Query: 328 QQTTVNLEGIEIDPITDNLPNDE 350
T NL+ + D I ++LP +E
Sbjct: 293 PTTAANLQAVSHD-IDESLPTEE 314
>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1154
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I N S I Q +R + K + L WVP H +GNE +DRLAK
Sbjct: 922 DSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPLRLQWVPGHYSDLGNEAADRLAK 981
Query: 68 EALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
EA+ + ++ K F++++I W W
Sbjct: 982 EAVGLDKEHPFQHLLSREKGFIRNRIQEEWERGW 1015
>gi|358254968|dbj|GAA56659.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 178
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 110 RRQVKASVQADREVWWTQKAKEMEEAHKSGNARKLFQLIR-ATGPRKPPVSETIKDRNGV 168
Query: 307 KISNKEERLE 316
ISNKEERL+
Sbjct: 169 TISNKEERLD 178
>gi|427780027|gb|JAA55465.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 859
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 11 DSLSALQSIQNEFSSNPIA-QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
D SA+Q + +N Q + ++ K ++ F W+PSHVG+ GNE +D LA EA
Sbjct: 654 DCKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEA 713
Query: 70 LSSN----SPSVNTIPINYFKRFLKSKILSTWNT 99
LS +P+ +P K+ ++S S WN+
Sbjct: 714 LSRQPTIRAPTNQQLP----KQTIQSHFRSLWNS 743
>gi|242826474|ref|XP_002488649.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712467|gb|EED11893.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1747
Score = 47.8 bits (112), Expect = 0.011, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q + F + A +R L K S+ WVP H I GNE +D AK+ +
Sbjct: 1532 STGSSQGVFESFRTLAAAWPLRERLPHTKS-GSVRIRWVPGHAKIPGNEAADLAAKKGAA 1590
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S SP + KR K++ LS + W +A + ++ P P
Sbjct: 1591 STSPPPHNFSYASLKRHAKAQYLSAAQSHWQKVAPQTYQDLEITTSPKRP 1640
>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1031
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 11 DSLSALQSIQNE----FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +ALQ++ N + + +A + R + S+ F W+PSHVGI GNEE+D LA
Sbjct: 973 DSRAALQTLANHRRAGLTGSLLASKFRALTASGA---SVSFHWLPSHVGIAGNEEADTLA 1029
Query: 67 K 67
K
Sbjct: 1030 K 1030
>gi|358336249|dbj|GAA54801.1| E3 ubiquitin-protein ligase KCMF1, partial [Clonorchis sinensis]
Length = 972
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R + + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 581 RHQVKASVKADREVWWTQKAKEMEEDQKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGV 639
Query: 307 KISNKEERL 315
ISNKEER+
Sbjct: 640 TISNKEERV 648
>gi|298204357|gb|ADI61827.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 937
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 223 VVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNL 282
+V EDGL A K EY+ + QR RR R+ + + +++Q + + + ++
Sbjct: 396 IVKRKARKEDGLTTD-ADKHEYRLLHHEVQRLCRRDRDAYISAVCDDIQRDSERMHSKDM 454
Query: 283 YRGMKSAVGPIRKPLNIIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLE 335
+R +K + IED GN I N++ L+RWR + + +++++ ++E
Sbjct: 455 FRRVKLLAKEYKLKTWTIEDDRGNLIINRQAALDRWRRYSEQLYSEKGCNDIE 507
>gi|358336376|dbj|GAA54902.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 79
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 260 EEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLER 317
E WW +K E++E +T L++ ++ A G RKP I+D+NG ISNKEERL+R
Sbjct: 19 EVWWTQKAKEMEEAQKAGNTRRLFQLIR-ATGT-RKPFVSENIKDRNGVTISNKEERLDR 76
Query: 318 WRE 320
W E
Sbjct: 77 WAE 79
>gi|432868793|ref|XP_004071636.1| PREDICTED: uncharacterized protein LOC101155354 [Oryzias latipes]
Length = 1091
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 236 LPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRK 295
L K++Y+EA + +R VR R + + E + + + LYR + G
Sbjct: 713 LQTKYKQQYREANKTVKRMVRADRRAYIEELAEEAERATTRGEQGQLYRISRQVCGKHHS 772
Query: 296 PLNI-IEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEI-DPITDNLPNDERPT 353
+++ I+DK G ++ + E+ RW EHFQ V N+ EG +I + TD N + PT
Sbjct: 773 TVSLPIKDKQGKLLTTEAEQDTRWAEHFQEVLNRDPPT--EGADIPEGKTDLDINTDPPT 830
Query: 354 ENEI--MLETLIFPKSPIKMN 372
+ EI ++++L K+P K +
Sbjct: 831 KEEIVSVIKSLKSNKAPDKTD 851
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 236 LPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRK 295
L K++Y+EA + +R VR R + + E + + + LYR + G
Sbjct: 349 LQTKYKQQYREANKTVKRMVRADRRAYIEELAEEAERATTRGEQGQLYRISRQVCGKHHS 408
Query: 296 PLNI-IEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEI-DPITDNLPNDERPT 353
+++ I+DK G ++ + E+ RW EHFQ V N+ EG +I + TD N + PT
Sbjct: 409 TVSLPIKDKQGKLLTTEAEQDTRWAEHFQEVLNRDPPT--EGADIPEGKTDLDINTDPPT 466
Query: 354 ENEI--MLETLIFPKSP 368
+ EI ++++L K+P
Sbjct: 467 KEEIVSVIKSLKSNKAP 483
>gi|386642404|emb|CCD41787.1| pol protein, partial [Simian immunodeficiency virus]
Length = 651
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 20 QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
Q EFS +PI EI N L+ + +++ +WVP+H GI GNEE D+L + +
Sbjct: 408 QPEFSDSPIVTEIINQLIGKE---AVYLSWVPAHKGIGGNEEVDKLVSQGI 455
>gi|255940952|ref|XP_002561245.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585868|emb|CAP93597.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1513
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVK-----NKHILSLHFTWVPSHVGIVGNEESDRL 65
DS SALQ+IQN N Q I + +++ + L W+P H GN+ +DRL
Sbjct: 1281 DSKSALQAIQN--VKNKSGQRIVHAILQAATEVQGENIKLRLQWMPGHCENRGNDTADRL 1338
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
AKEA ++ F++SKI + W EW
Sbjct: 1339 AKEAAQPGKTHPFRPLLSRENAFVRSKIYAQWGQEW 1374
>gi|358334693|dbj|GAA53158.1| hypothetical protein CLF_109648 [Clonorchis sinensis]
Length = 357
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKE 312
+R RE WW +K E+++ N L+ + P RKPL I D+NG I K
Sbjct: 197 IRADREAWWTRKAQEMKDARNAGKVQELFH-LTCLTVP-RKPLVSERIRDQNGPLIRGKA 254
Query: 313 ERLERWREHFQ 323
ERL+RW +F+
Sbjct: 255 ERLDRWARYFE 265
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS--------LHFTWVPSHVGIVGNEES 62
D+ +A+Q+++N P + ILV+ +L + F W+P+HVG+ GNEE+
Sbjct: 1681 DNQAAVQAVRN-----PKHSSGQYILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEA 1735
Query: 63 DRLAKEA----LSSNSPSVNTIP--INYFKRFLKSKILSTWNTEW 101
DRLAK A L++ P + I + K ++ + W T W
Sbjct: 1736 DRLAKRAADPTLNTEQPEPDLIRTLLASTKSTIRQAMKGEWETSW 1780
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 19/105 (18%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS--------LHFTWVPSHVGIVGNEES 62
D+ +A+Q+++N +S+ + ILV+ +L + F W+P+HVG+ GNEE+
Sbjct: 1521 DNQAAVQAVRNPKNSSG-----QYILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEA 1575
Query: 63 DRLAKE----ALSSNSPSVNTIP--INYFKRFLKSKILSTWNTEW 101
DRLAK AL++ P + I + K ++ + W T W
Sbjct: 1576 DRLAKRAADPALNTEQPEPDLIRTLLATTKSTIRQAMKGEWETSW 1620
>gi|5597017|gb|AAC24982.2| reverse transcriptase [synthetic construct]
Length = 1016
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 242 REYQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL 297
RE+ R+ + E+ R+ RE WW+++ NE++ A + L++ +++
Sbjct: 379 REFDHKRRLLRNEIGQSLRKDREAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVS 438
Query: 298 NIIEDKNGNKISNKEERLERWREHFQHVFN----QQTTVNLEGIEIDPITDNLPNDERPT 353
I + +G I+N RL RW E F+ FN T+ +L P+T + PN+
Sbjct: 439 ETIYEDDGMPITNISRRLGRWAEFFEGQFNWPAAPATSTSLSCPPW-PVTTDPPNE---A 494
Query: 354 ENEIMLETLIFPKSPIKMNFP 374
E L+ L KSP + P
Sbjct: 495 EVRKELQLLKRYKSPGPDDLP 515
>gi|358376686|dbj|GAA93218.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 640
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYF----KRFLKSKILSTWN 98
+ L WVP H G GNE +DRLAKE + + N P + K F+++KI W
Sbjct: 427 IPLRLQWVPGHCGDPGNETADRLAKETVGAE----NKHPFQHLLSREKAFIRNKIKKEWE 482
Query: 99 TEW 101
EW
Sbjct: 483 QEW 485
>gi|358255719|dbj|GAA57388.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 104
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKE 312
VR E W +K+ E++E N + L+ ++S GP RKPL I +NG+ IS KE
Sbjct: 33 VRADHEARWTRKVEEMKEAKNDGNVRRLFHLIRS-TGP-RKPLVSETIRGQNGSLISRKE 90
Query: 313 ERLERWREHFQHVFN 327
RL+RW +HF+ F+
Sbjct: 91 -RLDRWAQHFEQQFS 104
>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
Length = 809
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 11 DSLSALQSIQNEFSSNPIAQEI----RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
D+ S L I + S +P+A +I + I +N+ I W+ +H+G+ GNE +D LA
Sbjct: 589 DARSTLDVIASGESLHPLAFKITKNLKTITERNQEI---RLFWIKAHIGLEGNERADVLA 645
Query: 67 KEALSS--NSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
KEA S P + P+++ KR ++ + W+ +
Sbjct: 646 KEAALSLKCKPHYDRCPVSFAKRTIRQGSVDEWDLRYTT 684
>gi|380473899|emb|CCF46062.1| reverse transcriptase, partial [Colletotrichum higginsianum]
Length = 198
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
W P H GI GNEE+D LAKEA S + + KR ++ L + W ++ +
Sbjct: 24 WCPGHTGIAGNEEADALAKEACRQIPESQPQPTLAHLKRESRAADLQAFARRWPSICPRQ 83
Query: 109 LRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
+ P P L RLP+ L L + GD
Sbjct: 84 YADLGISPHPKPPEL---------RLPRHLLGRLYAARSHHGDF 118
>gi|350644137|emb|CCD61084.1| acyl-CoA:glycerol-3-phosphate acyltransferase [Schistosoma mansoni]
Length = 1209
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Query: 242 REYQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL 297
RE+ R+ + E+ R+ RE WW+++ NE++ A + L++ +++
Sbjct: 698 REFDHKRRLLRNEIGQSLRKDREAWWSERANEMEAAAASGNCRKLFQLIRATGSKKSGVS 757
Query: 298 NIIEDKNGNKISNKEERLERWREHFQHVFN----QQTTVNLEGIEIDPITDNLPND 349
I + +G I+N RL RW E F+ FN T+ +L P+T + PN+
Sbjct: 758 ETIYEDDGMPITNISRRLGRWAEFFEGQFNWPAAPATSTSLSCPPW-PVTTDPPNE 812
>gi|358338293|dbj|GAA56625.1| translation initiation factor 5 [Clonorchis sinensis]
Length = 397
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 267 INELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLERWREHFQHV 325
+ E Q+ N + L R A GP R P++ ++ +NG ISNKEE L+RW E +
Sbjct: 1 MEEAQKAGNARRLFQLIR----ATGPRRPPVSKTMKHQNGKIISNKEECLDRWAE----L 52
Query: 326 FNQQTTVNLEGIEIDPITDNLP---NDERPTENEI 357
F QQ G ++P D P N E PT +E+
Sbjct: 53 FEQQLPWPPAGTYVEPTGDVEPWTVNVEPPTASEV 87
>gi|443690773|gb|ELT92824.1| hypothetical protein CAPTEDRAFT_204342 [Capitella teleta]
Length = 294
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKR 87
I Q+ + ++K I+ F W PSHVGI NE LAK+AL N + IP FK
Sbjct: 179 IFQKCTCLAGRDKRII---FIWCPSHVGIPENET---LAKQALGMNILNC-PIPHTAFKP 231
Query: 88 FLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKV 144
+S + + +EW N+L I+ + W P E R ++ +A L++
Sbjct: 232 IARSFVKTQRQSEWDQETGNELHDIQPDIGSWPPCQREKRRE------EIVIARLRI 282
>gi|358333608|dbj|GAA52101.1| sorting nexin-1 [Clonorchis sinensis]
Length = 628
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + L++ ++ A GP + P++ I+D+NG
Sbjct: 342 RRQVKASVKADREVWWTQKAKEMEEAHKSGNARRLFQLIR-ATGPRKPPVSETIKDRNGV 400
Query: 307 KISNK-EERLERWREHFQHVFN 327
+SNK +R+E+ +E F ++ N
Sbjct: 401 TVSNKTTKRVEQEQERFNNISN 422
>gi|358339952|dbj|GAA47914.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 234
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R++ + V+ RE WW +K E++E + +++ ++ A GP + P+ I+D+NG
Sbjct: 145 RRQVKASVKADREVWWTQKAREMEEAQKSGNARRVFQLIR-ATGPRKTPVRETIKDRNGV 203
Query: 307 KISNKEER 314
ISNKEER
Sbjct: 204 TISNKEER 211
>gi|358334382|dbj|GAA52829.1| polyprotein, partial [Clonorchis sinensis]
Length = 278
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 260 EEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLER 317
E WW +K E++E + L++ + A GP + P++ I D+NG ISN+EERL+R
Sbjct: 12 EVWWTQKAKEMEEAQKAANARRLFQ-LICATGPRKPPVSETIIDRNGTTISNREERLDR 69
>gi|386642406|emb|CCD41788.1| pol protein, partial [Simian immunodeficiency virus]
Length = 658
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 20 QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
Q EFS +PI EI N L+ + +++ +WVP+H GI GNEE D+L +
Sbjct: 419 QPEFSDSPIVTEIINQLIGKE---AVYLSWVPAHKGIGGNEEVDKLVSRGI 466
>gi|242825272|ref|XP_002488406.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712224|gb|EED11650.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1732
Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 35/78 (44%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S PS KR K++ LS T W
Sbjct: 1561 SVQIRWVPGHTKIPENEAADSAAKEGAASTPPSPYKSSYASLKRHAKTQSLSAAQTRWQT 1620
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P +P
Sbjct: 1621 IAPQTYQDLEITTSPKHP 1638
>gi|358337308|dbj|GAA55687.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 199
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNG 305
R++ + R +E W ++ E+ + N + L+ ++S GP RKPL II D++G
Sbjct: 120 RRQVKLSTRADQEAWRTRQAEEMGDAKNAGNVRKLFHLIRS-TGP-RKPLVSEIIRDQSG 177
Query: 306 NKISNKEERLERWREHFQHVFN 327
+ I +K +RL+RW ++F+ F+
Sbjct: 178 SLICSKAKRLDRWAQYFEQQFS 199
>gi|350645817|emb|CCD59579.1| hypothetical protein Smp_191250 [Schistosoma mansoni]
Length = 677
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 242 REYQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL 297
RE+ R+ + E+ R+ RE WW+++ NE++ A + L++ ++ A G + +
Sbjct: 39 REFDHKRRLLRSEIGQSLRKDRETWWSERANEMEAAAASGNCRKLFQLIR-ATGIKKSGV 97
Query: 298 N-IIEDKNGNKISNKEERLERWREHFQHVFN----QQTTVNLEGIEIDPITDNLPNDERP 352
+ I + +G I+N RL RW E F+ FN T+ +L P+T + PN+
Sbjct: 98 SETIYEDDGMPITNISRRLGRWAEFFEGQFNWPAAPATSTSLS-CPPWPVTTDPPNE--- 153
Query: 353 TENEIMLETLIFPKSPIKMNFPFLVLC----LLAEEHGKMNNRV 392
E L+ L KSP + P +L LAEE + +V
Sbjct: 154 AEVRKELQLLKRYKSPGPDDLPPALLKDGGDFLAEELTALFAKV 197
>gi|380490755|emb|CCF35795.1| reverse transcriptase [Colletotrichum higginsianum]
Length = 906
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
++ W P H GI GNEE+D LAKEA S + + KR ++ L + W ++
Sbjct: 728 VYIWWCPGHTGIAGNEEADALAKEACRQIPESQPQPTLAHLKRESRAADLQAFARRWPSI 787
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
+ + P P L RLP+ L L + GD
Sbjct: 788 CPRQYADLGISPHPKPPEL---------RLPRHLLGRLYAARSHHGDF 826
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 14/135 (10%)
Query: 32 IRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKS 91
+ + +H++ WVP H I GN +D LA ++ + IP K LK
Sbjct: 1050 VCTVYTAKQHVV---VCWVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKR 1106
Query: 92 KILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKV--IQETL 149
K+ + W + W NKL IK + W P + +R +V+L L+ T
Sbjct: 1107 KLRAYWQSTWDQQTHNKLHVIKPQLGHWPP-------ISKSRYTEVTLTRLRTGHTHSTH 1159
Query: 150 GDLERQGDLDLDLCD 164
L G D CD
Sbjct: 1160 AYLLSGG--DAPFCD 1172
>gi|358332502|dbj|GAA51144.1| large subunit ribosomal protein L24e [Clonorchis sinensis]
Length = 570
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLE 316
RE WW +K E+ E A K + + A GP RKP I+D+ G I NKEERL+
Sbjct: 195 REVWWTEKAKEM-EGAQKAGSARRSLQLTHATGP-RKPSVSEAIKDRKGVTILNKEERLD 252
Query: 317 RWREHFQH 324
RW +F+
Sbjct: 253 RWAGYFEQ 260
>gi|254587306|emb|CAX83710.1| endonuclease-reverse transcriptase [Schistosoma japonicum]
Length = 1007
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
EY +A + ++ +R + ++ ++ A + LY K G K + +
Sbjct: 392 EYTQANKPVKKSIRADKRKYIEGLATTAEKAAREGSMKQLYDTTKKLAGKYSKSERPVRN 451
Query: 303 KNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDER-PTENEIMLET 361
K G I+ +E+ +RW EHF+ + N+ N IE +P +LP D + PT EI + T
Sbjct: 452 KEGKPITEIQEQRDRWAEHFEELLNRPAPPNPPDIEAEPT--DLPIDVKPPTMEEIKITT 509
>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 362
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
Query: 2 ATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEE 61
A +L +S L L+ +N N +A +I +N+ + W+P HV + GNE
Sbjct: 234 AVLLTDSQPVCL-FLKKSRNSRMRNSVANDILEKAKRNRTTIQ----WIPGHVQVDGNET 288
Query: 62 SDRLAKEALSSNSPSVNTI----PINYFKRFLKSKILSTWNTEWVNLADNKLRQI----K 113
+D LA++ALS+ N I I+YF+ SKI ++W ++V L+Q+
Sbjct: 289 ADGLARQALSAEFVMENDIFVHDAISYFEERQASKI-NSWYQDYVRQKGKTLKQLIESDS 347
Query: 114 EEKRPW 119
EE+ P+
Sbjct: 348 EEEDPY 353
>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 20/103 (19%)
Query: 11 DSLSALQSIQNEFSSN-----PIAQ---EIRNILVKNKHILSLHFTWVPSHVGIVGNEES 62
DS +A+Q+I + IA+ E+RN V+ +S+H W+P+H GI GNE +
Sbjct: 19 DSQAAIQAIDGTQKTGQQILGSIAEKWDELRNQGVQ----VSIH--WIPTHQGIEGNERA 72
Query: 63 DRLAKEALSSNSPSVNTI----PINYFKRFLKSKILSTWNTEW 101
DR AKEA + + I P++ KR LK+ W EW
Sbjct: 73 DRAAKEA--TGWRLIRNIGLQQPLSALKRDLKTLAYKQWEQEW 113
>gi|299745166|ref|XP_001831512.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
gi|298406463|gb|EAU90359.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
Length = 289
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEA--LSSNSPSVNTIPINYFKRFLKSKILST--WNTE 100
+H TW PSH GI GNE DRLAK+A L+ N+P I I+ ++K+ + W E
Sbjct: 64 IHLTWCPSHHGIPGNERVDRLAKQATNLAHNAP----ITISRTNAIRRAKLAAQKEWTQE 119
Query: 101 W 101
W
Sbjct: 120 W 120
>gi|67903322|ref|XP_681917.1| hypothetical protein AN8648.2 [Aspergillus nidulans FGSC A4]
gi|40741492|gb|EAA60682.1| hypothetical protein AN8648.2 [Aspergillus nidulans FGSC A4]
gi|259483134|tpe|CBF78260.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1581
Score = 45.8 bits (107), Expect = 0.040, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP + P Y +R K + + T + N
Sbjct: 1394 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPA-YLRREAKQWLRTETYTAYANK 1452
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR S +LP+ L L + GD
Sbjct: 1453 APETYKALN-----IRPHTKESR-SREHKLPRWVLGRLVAARTGHGDF 1494
>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
Length = 1234
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLSA+ SI+N +++ IR+++ + + W+P H GI+GNE +D+ AK L
Sbjct: 1009 DSLSAIDSIKNPNNNSFYPNRIRSLITQLAP--KIKIMWIPGHSGIIGNELADQAAK--L 1064
Query: 71 SSNSPSVNTIPINY--FKRFLKSKI 93
+SN P + T IN KR LK+++
Sbjct: 1065 ASNMPLIVTPNINNTDIKRHLKAEL 1089
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADN 107
WVP H I GN +D LA ++ + IP K LK K+ + W + W N
Sbjct: 1063 CWVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKRKLRAYWQSTWDQQTHN 1122
Query: 108 KLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKV--IQETLGDLERQGDLDLDLCD 164
KL IK + W P + +R +V+L L+ T L G D CD
Sbjct: 1123 KLHVIKPQLGHWPP-------ISKSRYTEVTLTRLRTGHTHSTHAYLLSGG--DAPFCD 1172
>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1758
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVK-NKHILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + N L + F W+P+H GI GNE +D+LAK
Sbjct: 1511 DNQAALKALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPAHQGIEGNELADKLAK 1570
Query: 68 EA 69
EA
Sbjct: 1571 EA 1572
>gi|427783061|gb|JAA56982.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNIL-VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q EIR+++ ++ + F W+PSH G++GNE +D A
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAA 294
Query: 67 KEALSSNSPSVNTIPIN 83
+ AL + V IP++
Sbjct: 295 RSALQGDKEEV--IPLS 309
>gi|358253185|dbj|GAA52406.1| protein kinase [Clonorchis sinensis]
Length = 585
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 289 AVGPIRKPLN-IIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLP 347
A GP + P++ I+ +NG ISNK E L+RW E+F+ QQ + G ++P D P
Sbjct: 258 ATGPRKPPVSETIKGRNGTTISNKGEHLDRWAEYFE----QQLSWPPAGTYLEPTGDVEP 313
Query: 348 ---NDERPTENEI 357
N E PT +E+
Sbjct: 314 WTVNMEPPTASEV 326
>gi|358338212|dbj|GAA36029.2| protein spinster homolog 1, partial [Clonorchis sinensis]
Length = 620
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNK 307
R++ + VR RE WW +K E+++ + + L+R ++S P +I D+NG+
Sbjct: 551 RRQVKLSVRADREAWWTRKAKEMRDAKSAGNVCKLFRLIRSTGRPKLLVNELIRDQNGSV 610
Query: 308 ISNKEERLER 317
I +K RL+R
Sbjct: 611 ICSKVGRLDR 620
>gi|242825218|ref|XP_002488395.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712213|gb|EED11639.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 669
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A +R L K S+ WVP HV I NE +D AKE +S P+
Sbjct: 460 QEIFESFHTLAAAWPLRKRLPHTKSG-SIQIRWVPGHVKIPENEAADLAAKEGAASIPPA 518
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
+ KR+ K++ LS ++W +A + ++ P P
Sbjct: 519 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRP 563
>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 696
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNIL------VKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS SALQ+I+N N Q I + + V+ K I +L W+P H GN+ +DR
Sbjct: 464 DSKSALQAIENP--GNKSGQRIIHAILQAAAEVQAKGI-ALRLQWIPGHCDDPGNDAADR 520
Query: 65 LAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
LAK+A S + + ++ KI + W EW
Sbjct: 521 LAKDAASPGKTHPFRPLLTRKRALIRDKIRAQWEREW 557
>gi|358376556|dbj|GAA93101.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 922
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHI----LSLHFTWVPSHVGIVGNEESDRLA 66
DS+SALQ+I+N S+ + IR IL + + + WVP H GN+E+DRLA
Sbjct: 707 DSMSALQAIRNP-SNRSGQRTIRAILQAASEMKARGIPIRLQWVPGHCNDPGNDEADRLA 765
Query: 67 KEALS 71
KEA+
Sbjct: 766 KEAVG 770
>gi|242826378|ref|XP_002488629.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712447|gb|EED11873.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1744
Score = 45.4 bits (106), Expect = 0.050, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 1530 STGSSQEIFESFRTLAAAWPLRKRLPHTKS-GSIQIRWVPGHAKIPENEAADLAAKEGAA 1588
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S P + KR+ K++ LS ++W +A + ++ P P
Sbjct: 1589 SIPPDPHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRP 1638
>gi|427783937|gb|JAA57420.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 11 DSLSALQSIQNEFSSNP-------IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + P A+ + ++ K HI F W+PSH GI+GNE +D
Sbjct: 235 DSKTALQSLLSTLRRGPHEQLVFETAEMLHHLTEKGHHIT---FQWLPSHCGIIGNERAD 291
Query: 64 RLAKEA 69
+ A+ A
Sbjct: 292 QAARSA 297
>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS-----LHFTWVPSHVGIVGNEESDRL 65
DS+S LQ++ N + N + Q I + ++ L L WVP H G +GNE +DRL
Sbjct: 194 DSMSVLQALSN--ARNKLGQRIIQAVQQSVQELQTQGIPLRLQWVPGHCGDLGNEAADRL 251
Query: 66 AKEAL 70
AKEA+
Sbjct: 252 AKEAM 256
>gi|383860150|ref|XP_003705554.1| PREDICTED: leucine-rich repeat-containing protein 15-like
[Megachile rotundata]
Length = 635
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHIL-SLHFTWVPSHVGIVGNEESDRLAKEA 69
DS SA+ +IQ ++S+ + QE + ++ S+ W+ SH+ I GN+++DR AKEA
Sbjct: 105 DSTSAISAIQKLWTSDFVIQECQEAYTRSSQKNNSITIMWILSHIDITGNDKADRAAKEA 164
Query: 70 LSSNSP 75
+S +P
Sbjct: 165 ANSTTP 170
>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
Length = 1312
Score = 45.1 bits (105), Expect = 0.067, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DS +A+Q++QN S I +I I+ + + W+P+H+G+ GNE +D A+E
Sbjct: 1077 DSEAAIQAVQNPRRPSGQYILDQIYYIVRRYNMQGRVQIRWIPAHIGVPGNEAADEAARE 1136
Query: 69 ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
++ KR ++ +I W EW
Sbjct: 1137 GTQKAGEAICLAAAA--KRQIRRRIKDRWTREW 1167
>gi|391865317|gb|EIT74602.1| reverse transcriptase [Aspergillus oryzae 3.042]
Length = 428
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DS +A+Q++QN S I +I I+ + + W+P+H+G+ GNE +D A+E
Sbjct: 203 DSQAAIQAVQNPRRPSGQYILDQIYYIIRRYNMQNRVQIRWIPAHIGVPGNEAADEAARE 262
Query: 69 ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
++ KR ++ I W EW
Sbjct: 263 GTQRTGEAICLAAA--VKRQIRRSIKDRWIREW 293
>gi|358253489|dbj|GAA53232.1| hypothetical protein CLF_109830 [Clonorchis sinensis]
Length = 83
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 255 VRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEE 313
+R +E WW + +++ N + L+ ++S+ GP + P++ II D+NG+ I + E
Sbjct: 11 IRADQEAWWTRMAENMEDAKNAGNVRTLFHVIRSS-GPRKPPVSEIISDQNGSLICSSAE 69
Query: 314 RLERWREHFQHVFN 327
L+ W + F+ F+
Sbjct: 70 ALDGWAQCFEQQFS 83
>gi|242806002|ref|XP_002484651.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715276|gb|EED14698.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 475
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 261 STGSSQEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAA 319
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S P+ + KR+ K++ LS ++W +A + ++ P P
Sbjct: 320 SIPPAPHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRP 369
>gi|342869519|gb|EGU73183.1| hypothetical protein FOXB_16307 [Fusarium oxysporum Fo5176]
Length = 609
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 11 DSLSALQSIQNEFS--SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
D+L+A +Q S S I E + ++ + ++ WVP H I GNE++D+LAK
Sbjct: 463 DNLAAATCLQGTPSDSSQHIFLEFQALVTSHG---AVQVRWVPGHTDIPGNEQADKLAKA 519
Query: 69 ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRE 128
A S P + Y +R + K T+ W A + +++ + P
Sbjct: 520 ASSLPEPEGARSTLAYLRRIARQKPKDTFKAWWSASAPEQYKRLNLKATIGCPP------ 573
Query: 129 SNSARLPQVSLAELKVIQETLGDL 152
LP+V+L L + GD
Sbjct: 574 --ELSLPRVALHHLLAARSLHGDF 595
>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
Length = 486
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQNEFSSNP--IAQEIRNILVKNKHI-LSLHFTWVPSHVGIVGNEESDRLAK 67
D+ + LQ+++N S + I + I L K + L++HF W+P+H G+ GNE++DR AK
Sbjct: 249 DNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNEQADRRAK 308
Query: 68 EA 69
EA
Sbjct: 309 EA 310
>gi|402243584|gb|AFQ41105.1| pol protein, partial [Simian immunodeficiency virus]
Length = 297
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRL 65
S+ +L L S ++ S +P+ QEI N+L++ + I + WVP+H GI GNEE D+L
Sbjct: 53 SQYALGILSSCPDQ-SESPLVQEIINLLIQKEKI---YLNWVPAHKGIGGNEEVDKL 105
>gi|242825154|ref|XP_002488382.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712200|gb|EED11626.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 664
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
+L S+ S A +S + + P+ + + + S+ WVP H I NE +D
Sbjct: 446 LLSPSTGSSQEAFESFRTLAAGWPLRERL-----PHTKSGSVQIRWVPGHTKIPENEAAD 500
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
AKE +S PS KR K++ LS T W +A + ++ P P
Sbjct: 501 SAAKEGAASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKRPG 559
>gi|358254587|dbj|GAA55885.1| hypothetical protein CLF_109265, partial [Clonorchis sinensis]
Length = 243
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLER 317
R WW +K+ ++++ N N+ R S+ GP + P++ D+NG+ I +KEE +R
Sbjct: 7 RYVWWARKVEQMKDTKNPG---NICRLSHSSTGPRKPPVSETTRDQNGSLIPSKEEGFDR 63
Query: 318 WREHFQHVFNQQTTVNLE 335
W ++F+ Q T L+
Sbjct: 64 WAQYFE-ATTQSVTCYLK 80
>gi|427793319|gb|JAA62111.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 333
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNIL-VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q EIR+++ ++ + F W+PSH G++GNE +D A
Sbjct: 112 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAA 171
Query: 67 KEAL 70
+ AL
Sbjct: 172 RSAL 175
>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
Length = 701
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
+ L WVP H G GNE +DRLAKEA+ + ++ K F++++I W W
Sbjct: 242 IPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSREKGFIRNRIQEEWERGW 300
>gi|242814720|ref|XP_002486425.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714764|gb|EED14187.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 285
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A +R L K S+ WVP H I NE +D AKE +S P+
Sbjct: 76 QEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAASIPPA 134
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
+ KR+ K++ LS ++W +A + ++ P P
Sbjct: 135 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRP 179
>gi|427791847|gb|JAA61375.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 928
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIR-NILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
DS SAL+ + E + P+A+ + ++ ++ + W+PSHVGI GNE +D LAK A
Sbjct: 766 DSRSALRQLAKEDRAPPLAERVAWSLHSLREYGCDVALQWIPSHVGIAGNEAADDLAKAA 825
>gi|242827316|ref|XP_002488808.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712064|gb|EED11492.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 290
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 143 STGSSQEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLTAKEGAA 201
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S P+ KR K++ LS ++W +A + ++ P P
Sbjct: 202 STPPAPQKSSYASLKRHAKTQSLSAAQSQWQKVAPQSYQDLEITTSPKRP 251
>gi|358333056|dbj|GAA51648.1| RNA polymerase II-associated factor 1 homolog [Clonorchis sinensis]
Length = 850
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 243 EYQEARQKCQREV----RRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKP-L 297
EY R+ +R++ R+ +E W K E+++ ++ LY+ ++S GP + +
Sbjct: 13 EYDGPRKSLKRQMVKSLRKGQELWCASKAREMEKAFATGNSGTLYQLIRS-TGPRKAAVI 71
Query: 298 NIIEDKNGNKISNKEERLERWREHFQHVFN-QQTTVNLEGIEIDP--ITDNLPNDE 350
I +K G+ I++++ RLERW EHF F+ T +E + D + NLP +E
Sbjct: 72 ETISEKGGSLINSQKRRLERWAEHFNCPFSCSPATQAVEILHTDEWNVDPNLPPEE 127
>gi|67524677|ref|XP_660400.1| hypothetical protein AN2796.2 [Aspergillus nidulans FGSC A4]
gi|40744048|gb|EAA63230.1| hypothetical protein AN2796.2 [Aspergillus nidulans FGSC A4]
gi|259486281|tpe|CBF83995.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 686
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 32 IRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKS 91
+R L + H L W+P H GI GNE +D+LAK S SP++ P Y +R K
Sbjct: 486 LRAALGQPCHRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPNIPPSP-AYLRREAKQ 544
Query: 92 KILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGD 151
+ + T + + A + + P ESR + +LP+ L L + GD
Sbjct: 545 WLRTEAYTAYASKAPQAYKTLDI-----RPHTKESR-TREHKLPRWVLGRLVAARTGHGD 598
Query: 152 L 152
Sbjct: 599 F 599
>gi|358340315|dbj|GAA48236.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 80
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLE 316
RE WW + E++E + L++ ++ A GP RKP I D+NG I KEERL+
Sbjct: 17 REVWWIQNAKEMEEAQKAGNARRLFQLIR-ATGP-RKPSVSETINDRNGVTILIKEERLD 74
Query: 317 RWREHF 322
RW E+F
Sbjct: 75 RWAEYF 80
>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1463
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPI--NYFK 86
L + F W P HV I GNE +D+LA+EAL SPS +P NY K
Sbjct: 1262 LGISFVWCPGHVNIPGNEMADQLAREAL--ESPSAPPLPTKGNYLK 1305
>gi|242825380|ref|XP_002488428.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712246|gb|EED11672.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 897
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
+L S+ S A +S + + P+ + + + S+ WVP H I NE +D
Sbjct: 679 LLSPSTGSSQEAFESFRTLAAGWPLRERL-----PHTKSGSVQIRWVPGHTKIPENEAAD 733
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
AKE +S PS KR K++ LS T W +A + ++ P P
Sbjct: 734 SAAKEGAASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKRP 791
>gi|242827382|ref|XP_002488822.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712078|gb|EED11506.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 405
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 239 STGSSQEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAA 297
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
S P + KR+ K++ LS ++W +A + ++ P P
Sbjct: 298 SIPPDPHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRPG 348
>gi|242763273|ref|XP_002340543.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218723739|gb|EED23156.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 241
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
+L S+ S A +S + + P+ + + + S+ WVP H I NE +D
Sbjct: 23 LLSPSTGSSQEAFESFRTLAAGWPLRERLPHTKSG-----SVQIRWVPGHTKIPENEAAD 77
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
AKE +S PS KR K++ LS T W +A + ++ P P
Sbjct: 78 SAAKEGAASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKRP 135
>gi|407915534|gb|EKG09113.1| hypothetical protein MPH_13896 [Macrophomina phaseolina MS6]
Length = 288
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEAL----------SSNSPSVNTIPINYFKRFLKSK 92
+S+ F WVPSH G+ GNEE+D+LAK A P V + K+ +
Sbjct: 81 VSIKFHWVPSHRGVPGNEEADKLAKAAAQERRTLEAERCMTGPHVQPSLVAALKQAINQA 140
Query: 93 ILSTWNTEW 101
++ W W
Sbjct: 141 VMDEWKQLW 149
>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
Length = 804
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQNEFSSNP--IAQEIRNILVKNKHI-LSLHFTWVPSHVGIVGNEESDRLAK 67
D+ + LQ+++N S + I + I L K + L++HF W+P+H G+ GNE++DR AK
Sbjct: 249 DNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNEQADRRAK 308
Query: 68 EA 69
EA
Sbjct: 309 EA 310
>gi|242825949|ref|XP_002488544.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712362|gb|EED11788.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 453
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 239 STGSSQEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAA 297
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
S P + KR+ K++ LS ++W +A + ++ P P
Sbjct: 298 SIPPDPHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRPG 348
>gi|326480183|gb|EGE04193.1| hypothetical protein TEQG_03224 [Trichophyton equinum CBS 127.97]
Length = 210
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALS 71
+ F W+P+HVG+ GNEE+D+LAKEA S
Sbjct: 22 VQFRWIPAHVGVPGNEEADQLAKEAAS 48
>gi|242787321|ref|XP_002480983.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218721130|gb|EED20549.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 944
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A +R L K S+ WVP H I NE +D AKE +S P+
Sbjct: 735 QEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAASIPPA 793
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
+ KR+ K++ LS ++W +A + ++ P P
Sbjct: 794 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRPG 839
>gi|242815170|ref|XP_002486517.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714856|gb|EED14279.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 245
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q I F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 134 STGSSQEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPRHAKIPENEAADLAAKEGAA 192
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S P+ + KR K++ LS ++W +A + ++ P P
Sbjct: 193 STPPAPHKSSYASLKRHAKTQSLSAAQSQWQRVAPQSYQDLEITTSPKRP 242
>gi|427791527|gb|JAA61215.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1298
Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDRL 65
SK +L L S S + EIR +L + H + F W+PSH GI GN+ +D
Sbjct: 1029 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGH--DVVFQWLPSHCGISGNDLADEA 1086
Query: 66 AKEALSSNSPSVNTIPIN------YFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKR 117
A+EA S+ +IP++ Y + ++ L W T D +L + R
Sbjct: 1087 AREA--HGETSLVSIPLSRIDAARYLSKLAQNMTLQMWRTS--QFTDQRLYSLDPSLR 1140
>gi|241567430|ref|XP_002402293.1| conserved hypothetical protein [Ixodes scapularis]
gi|215501983|gb|EEC11477.1| conserved hypothetical protein [Ixodes scapularis]
Length = 345
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAKEA 69
DS +AL+ + + P+A+ + ++ ++ + + F WVPSH GI GNEE+D+LA
Sbjct: 133 DSRTALRHLLRTDDAPPLARSVVSLTLRLRDRGWEIAFQWVPSHCGIPGNEEADKLA--G 190
Query: 70 LSSNSPSVNTIPINYFKRFLKSKIL 94
L ++P P + RF +++L
Sbjct: 191 LVHDNPD---FPASTASRFNDARLL 212
>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
Length = 246
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)
Query: 31 EIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY-FKRFL 89
++R+ V+N L + WVPSHVGI+GNE +D LA EA + SV+ +P + +
Sbjct: 85 KLRSAYVQN---LDVVIVWVPSHVGILGNETADLLAGEA-ARQEESVDYLPPHTDLYSLV 140
Query: 90 KSKILSTWNTEWVNLADNKLRQIKE-------EKRPWNPSLHESR 127
K K S + E LA +++R + ++PW L SR
Sbjct: 141 KEKYFS--DIEKYLLAQSEIRGAQYFSLYPPFARKPWFAGLDLSR 183
>gi|119195267|ref|XP_001248237.1| hypothetical protein CIMG_02008 [Coccidioides immitis RS]
Length = 474
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 26 NPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
N A E+ +L+ + +SLH WVP+H GI GNE +DRLAKEA
Sbjct: 244 NVYAAELARVLMGLEIAISLH--WVPAHQGIKGNELADRLAKEA 285
>gi|242826577|ref|XP_002488670.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712488|gb|EED11914.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 655
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+AT L + S S Q I F + A +R L K S+ WVP H I NE
Sbjct: 433 VATRLLSPSTGSS---QEIFESFRTLTAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENE 488
Query: 61 ESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIK---EEKR 117
+D AKE +S P+ + KR K++ LS ++W +A + ++ KR
Sbjct: 489 AADLAAKEGAASTPPAFHKSSYASLKRHAKTQSLSAAQSQWQKVAPQSYQDLEITTSSKR 548
Query: 118 P 118
P
Sbjct: 549 P 549
>gi|242825693|ref|XP_002488491.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712309|gb|EED11735.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 360
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
+L S+ S A +S + + P+ + + + S+ WVP H I NE +D
Sbjct: 39 LLSPSTGSSQEAFESFRTLAAGWPLRERLPHTKSG-----SVQIRWVPGHTKIPENEAAD 93
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
AKE +S PS KR K++ LS T W +A + ++ P P
Sbjct: 94 SAAKEGAASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKRP 151
>gi|67516173|ref|XP_657972.1| hypothetical protein AN0368.2 [Aspergillus nidulans FGSC A4]
gi|40746618|gb|EAA65774.1| hypothetical protein AN0368.2 [Aspergillus nidulans FGSC A4]
Length = 1411
Score = 43.9 bits (102), Expect = 0.14, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP + P Y ++ K + + T + N
Sbjct: 1224 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPA-YLRQEAKQWLRTETYTAYANK 1282
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR S +LP+ L L + GD
Sbjct: 1283 APETYKALN-----IRPHTKESR-SREHKLPRWVLGRLVAARTGHGDF 1324
>gi|119197373|ref|XP_001249288.1| hypothetical protein CIMG_10450 [Coccidioides immitis RS]
Length = 207
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 11 DSLSALQSIQNEFSSNPIA--QEIRNIL--VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +A+Q + N+ ++ + Q IR +KN+ I +LH WVP+HV I GNEE D
Sbjct: 118 DSQAAIQRLINQDLNSGLYYLQSIRKTAKSIKNQQI-NLHLHWVPAHVNIHGNEEPDLAV 176
Query: 67 KEALSSNS-PSVNTIPINYFKRFLKSKIL 94
K+A N S I + Y KR +K + +
Sbjct: 177 KKATELNQVCSERYISLTYIKRQIKEQAM 205
>gi|427783065|gb|JAA56984.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 456
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 DSLSALQSIQNEFSSNPIAQ---EIRNIL-VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS +ALQS+ + P Q EIR+++ ++ F W+PSH G++GNE +D A
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQATFQWLPSHCGVIGNEHADNAA 294
Query: 67 KEAL 70
+ AL
Sbjct: 295 RSAL 298
>gi|242794525|ref|XP_002482393.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718981|gb|EED18401.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 523
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFLKSKILSTWNTEW--VNLA 105
WVP H G+VGNE++D+ AK A S +P + + Y KR + T +EW +N
Sbjct: 304 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVKRACM-EARRTAVSEWARINAV 362
Query: 106 DNKLRQIKEEKRP--WN 120
+ R + K P WN
Sbjct: 363 QGRHRDGRVYKMPRGWN 379
>gi|242805424|ref|XP_002484526.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715151|gb|EED14573.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 806
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+AT L + S S Q + F + A +R L K S+ WVP H I NE
Sbjct: 584 VATRLLSPSTGSS---QEVFESFRTLAAAWPLRERLPHTKSG-SIQIRWVPGHTKIPKNE 639
Query: 61 ESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWN 120
+D AKE S PS KR+ K++ LS T W +A + ++ P
Sbjct: 640 AADLAAKEGAVSIPPSPYKSSYASLKRYAKTQSLSAAQTRWQTVAPQTYQDLEITTSPKR 699
Query: 121 P 121
P
Sbjct: 700 P 700
>gi|9828660|gb|AAB47724.2| Pol protein [Simian immunodeficiency virus]
Length = 1014
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ ++ S +P+ +EI L+K + I + +WVP+H GI GNE+ D+L +
Sbjct: 665 SQYALGVLQGTPDQ-SESPLVEEIIQKLIKREQI---YLSWVPAHKGIGGNEQVDKLVSQ 720
Query: 69 AL 70
+
Sbjct: 721 GI 722
>gi|360044468|emb|CCD82016.1| putative atp-binding cassette transporter [Schistosoma mansoni]
Length = 2071
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNK 307
R + + +R RE WW ++ NEL+ A + L++ +++ I + +G
Sbjct: 579 RNEIGQSLRTDREAWWLERANELEAAAASGNCRKLFQLIRATGSKKSGVSETIYEDDGMP 638
Query: 308 ISNKEERLERWREHFQHVFN 327
I+N RL RW E F+ FN
Sbjct: 639 ITNISRRLGRWAEFFEGQFN 658
>gi|331222567|ref|XP_003323957.1| hypothetical protein PGTG_05859 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 23 FSSNPIAQEIRNILVKNKHI------LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
SS+P++Q L + + W PSH GI+ NE++D LAKEA N P
Sbjct: 121 LSSDPLSQSPGQHLYTDNFFRMKLLGCPVKLYWCPSHEGIIANEKADTLAKEAAGENPPV 180
Query: 77 VN--TIPINYFKRFLK--------SKILSTWNTE 100
N + PI K K +K W+TE
Sbjct: 181 TNNSSSPITVAKSLAKLRQHTRSQAKPSEVWSTE 214
>gi|342867606|gb|EGU72508.1| hypothetical protein FOXB_16983 [Fusarium oxysporum Fo5176]
Length = 1080
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
++H WVP H + GNE++D+LAK A S P + Y +R + K + W
Sbjct: 903 AIHVRWVPEHSDVPGNEQADKLAKAASSLPEPEGARPTLAYLRRIARQKPKEAFEAWWST 962
Query: 104 LADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL----ERQGDLD 159
A +++ + +P LP+ +L L + GD ER +D
Sbjct: 963 SAPEHYKRLNLKATTGSPP--------ELSLPRAALHHLLAARSLHGDFAAYHERFDHVD 1014
Query: 160 LDL-CDSWRNLA 170
L C R A
Sbjct: 1015 ARLVCSCGRRKA 1026
>gi|298204355|gb|ADI61826.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 988
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 241 KREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVG----PIRKP 296
+REY R ++ RR + ++ + + A + D LY K + P +KP
Sbjct: 378 RREYSSMRLVIRKLARRDQRNAIDELADRAKLAAKRQDMKELYDVTKRIINKKHHPRKKP 437
Query: 297 LNIIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPNDERPTENE 356
L +D +G + EE+L RW EHF + ++ + +GI + + ++P PT NE
Sbjct: 438 L---KDCSGQLLCTTEEQLVRWTEHFTKLLSKCQSQPTDGISVPDLPLDIPIAP-PTFNE 493
Query: 357 IM 358
I+
Sbjct: 494 IV 495
>gi|256086020|ref|XP_002579205.1| ATP-binding cassette transporter [Schistosoma mansoni]
Length = 2009
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNK 307
R + + +R RE WW ++ NEL+ A + L++ +++ I + +G
Sbjct: 505 RNEIGQSLRTDREAWWLERANELEAAAASGNCRKLFQLIRATGSKKSGVSETIYEDDGMP 564
Query: 308 ISNKEERLERWREHFQHVFN 327
I+N RL RW E F+ FN
Sbjct: 565 ITNISRRLGRWAEFFEGQFN 584
>gi|242784380|ref|XP_002480375.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218720522|gb|EED19941.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 728
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A +R L K S+ WVP H I NE +D AKE +S P
Sbjct: 519 QEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAASIPPD 577
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
+ KR+ K++ LS ++W +A + ++ P P
Sbjct: 578 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRPG 623
>gi|312376130|gb|EFR23313.1| hypothetical protein AND_13122 [Anopheles darlingi]
Length = 361
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 26 NPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSV---NTIPI 82
N +A EI ++ + W+P HV + GN +D LA+ ALS N I I
Sbjct: 257 NAVADEI----LRMARTFQVTIQWIPGHVEVSGNRIADELARTALSEGGADAVLNNDIFI 312
Query: 83 NYFKRFL---KSKILSTWNTEWVNLADNKLRQIKEEKRP 118
+ R+ +S +++ W E+V L L+Q+ P
Sbjct: 313 HDAIRYFEERRSALINKWYQEYVRLKGKSLQQLMAGSCP 351
>gi|255068805|emb|CBA11992.1| endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene]
Length = 990
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
EY A++ +R V R R E + ++L+ + Y L R I K L + D
Sbjct: 399 EYTVAKRASKRAVARARSESLSPLYDKLETVEGQKLIYKLARSRDKVTQDIAKCL-CVRD 457
Query: 303 KNGNKISNKEERLERWREHFQHVFNQQTTVNL 334
G + N + ERWR +FQ + N Q +L
Sbjct: 458 SQGTLLCNHDSVKERWRSYFQELLNTQHPCSL 489
>gi|242826635|ref|XP_002488682.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712500|gb|EED11926.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S P+ + KR+ K++ LS ++W
Sbjct: 75 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 134
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P P
Sbjct: 135 VAPQSYQDLEITTSPKRP 152
>gi|242824235|ref|XP_002488218.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218713139|gb|EED12564.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 267
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S PS KR+ K++ LS ++W
Sbjct: 122 SIQIRWVPGHTIIPENEAADLAAKEGAASIPPSSYKSSYASLKRYAKTQSLSAAQSQWEK 181
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P P
Sbjct: 182 VAPQSYQDLEITTSPKRP 199
>gi|342867718|gb|EGU72536.1| hypothetical protein FOXB_16956 [Fusarium oxysporum Fo5176]
Length = 310
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
WVP H I GNE++D+LAK A S P + Y +R + K + W A +
Sbjct: 138 WVPGHSDIPGNEQADKLAKAASSLPEPEGAQPTLAYLRRIARQKPKEAFEAWWSTSAPEQ 197
Query: 109 LRQI 112
R++
Sbjct: 198 YRRL 201
>gi|342318905|gb|EGU10861.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]
Length = 2277
Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 42 ILSLHFTWVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFLKSKILSTWNTE 100
+ ++H +W+P HVG+VGNE +D AKEA+ + S + LKS+++ + E
Sbjct: 2012 VSTIHLSWLPGHVGVVGNEVADLAAKEAVRAMESAERERERRKERRTHLKSRLV--FVPE 2069
Query: 101 WVNLADNKLRQIKEEKRPWNPSLHESRESN----SARLPQVSLAELKVIQETLGDLERQG 156
L+D ++E W R ++ S+RL Q+S +T L+
Sbjct: 2070 MAELSDES----EDEGSEWEEGKRGGRSASHLAKSSRLTQLS-------DDTSPGLDSDA 2118
Query: 157 DLDLDLCDSWRNLAESQEANDDGDLSSHHV------TLDLANRIVQSYTGI 201
L L + W ++ A D + V LA+R Y G+
Sbjct: 2119 QLPLSISALWTTHKKATRARWDDEWRRSSVGRQLFAVTQLASRSASYYDGL 2169
>gi|242825554|ref|XP_002488465.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712283|gb|EED11709.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 327
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
WVP H I GNE +D AKE P+ + FKR KS+ S T W + A
Sbjct: 149 WVPGHANIPGNEAADCAAKEGAGKTVPTSHPWSYTAFKRHTKSQAASRAQTYWQSAAPQA 208
Query: 109 LRQIK 113
+ ++
Sbjct: 209 YQDLE 213
>gi|242789181|ref|XP_002481309.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717897|gb|EED17317.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 12 SLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
S + Q + F + A +R L K S+ WVP H I NE +D AKE +
Sbjct: 107 STGSSQEVFESFRTLAAAWPLRERLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAA 165
Query: 72 SNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
S P+ KR K++ LS ++W +A + ++ P P
Sbjct: 166 STPPAPQKSSYASLKRHAKTQSLSAAQSQWQKVAPQSYQDLEITTSPKRP 215
>gi|154270463|ref|XP_001536086.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409890|gb|EDN05278.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 378
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 9 SKDSLSALQSIQNEFSSNP---IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRL 65
K +L AL S+ SS+ + + I ++ N L + F W+P+H GI GNE +D+L
Sbjct: 93 GKVALGALLSLGTPLSSSGQSILLRIIDSLERANSQGLDVEFYWIPAHHGIEGNELADKL 152
Query: 66 AKEA 69
AKEA
Sbjct: 153 AKEA 156
>gi|242825810|ref|XP_002488515.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712333|gb|EED11759.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 488
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHIL-----SLHFTWVPSHVGIVGNEESDRL 65
DS SA+Q+I+N N Q + + ++ + L L W+P H GN+ +D L
Sbjct: 243 DSKSAIQAIKNP--RNTSGQRVIEAINQSAYELDSRGIPLRLQWIPGHCDDPGNDAADCL 300
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
AK A+ P++ K ++ +IL W EW
Sbjct: 301 AKAAVGPTKIHPFCRPVSREKAAIRRQILKEWEDEW 336
>gi|67527094|ref|XP_661584.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|40740261|gb|EAA59451.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|259481439|tpe|CBF74958.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 342
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GN+ +D+LAK S SP++ P Y +R K ++ + T + +
Sbjct: 155 LQVCWIPGHSGIAGNKLADKLAKLGSSIYSPNIPPSP-AYLQRETKQQLRTETYTAYASK 213
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR + +LP+ L L + GD
Sbjct: 214 APQAYKTLDIR-----PHTKESR-TREHKLPRWVLGRLVAARTGHGDF 255
>gi|67525771|ref|XP_660947.1| hypothetical protein AN3343.2 [Aspergillus nidulans FGSC A4]
gi|40744131|gb|EAA63311.1| hypothetical protein AN3343.2 [Aspergillus nidulans FGSC A4]
gi|259485679|tpe|CBF82905.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 960
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP + P Y +R K + + T + N
Sbjct: 773 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSP-AYLRREAKQWLRTETYTAYANK 831
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR S +LP+ L L GD
Sbjct: 832 APETYKALNI-----RPHTKESR-SREHKLPRWVLGRLVAACTGHGDF 873
>gi|242786282|ref|XP_002480775.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720922|gb|EED20341.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 882
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFL---KSKILSTWNTEWVNL 104
WVP H G+VGNE++D+ AK A S +P + + Y KR + +S W +N
Sbjct: 663 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVKRACMEARRAAVSEWAR--INA 720
Query: 105 ADNKLRQIKEEKRP--WN 120
+ R + K P WN
Sbjct: 721 VQGRHRDGRVYKMPRGWN 738
>gi|358339846|dbj|GAA47832.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 266
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 243 EYQEARQKCQREVRRI----REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN 298
+Y AR+ +R + R RE WW K E+++ ++ L R + +
Sbjct: 85 DYDGARRSLKRRIIRSLKDDREHWWISKAQEMEQAFAAGNSRTLIRSTGQKKAGVSEA-- 142
Query: 299 IIEDKNGNKISNKEERLERWREHFQHVFN 327
I +K+G I + + RLERW E F+ FN
Sbjct: 143 -ICEKDGKAIRSLKRRLERWAERFKEQFN 170
>gi|242821186|ref|XP_002487629.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712550|gb|EED11975.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 664
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
+L S+ S +S + ++ P+ + + +I S+ WVP H I NE +D
Sbjct: 446 LLSPSTGSSQEIFESFRTLAAAWPLRKRLPHIKSG-----SIQIRWVPGHAKIPENEAAD 500
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
AKE +S P+ + KR+ K++ LS ++W +A + ++ P P
Sbjct: 501 LAAKEGAASIPPAPHKSLYASLKRYAKTQSLSAAQSQWQKVAPQSYQDLEITTSPKRP 558
>gi|443700141|gb|ELT99252.1| hypothetical protein CAPTEDRAFT_193728 [Capitella teleta]
Length = 337
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNS 74
F W+PSH GI GNE +D LAK +LSS S
Sbjct: 46 FLWIPSHCGIQGNEAADALAKASLSSQS 73
>gi|67524407|ref|XP_660265.1| hypothetical protein AN2661.2 [Aspergillus nidulans FGSC A4]
gi|40743879|gb|EAA63063.1| hypothetical protein AN2661.2 [Aspergillus nidulans FGSC A4]
gi|259486429|tpe|CBF84258.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1538
Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP++ P Y +R K + + T + +
Sbjct: 1351 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPNIPPSPA-YLRREAKQWLRTEAYTAYASK 1409
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR + +LP+ L L + GD
Sbjct: 1410 APQAYKTLD-----IRPHTKESR-TREHKLPRWVLGRLVAARTGHGDF 1451
>gi|154277654|ref|XP_001539665.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413250|gb|EDN08633.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1489
Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK+A+SS +
Sbjct: 1293 WAPGHMGIEGNEEADRLAKQAVSSTA 1318
>gi|242804449|ref|XP_002484377.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218717722|gb|EED17143.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 833
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+AT L + S S Q + F + A +R L K S+ WVP H I NE
Sbjct: 611 VATRLLSPSTGSS---QEVFESFRTLAAAWPLRERLPHTKSG-SIQIRWVPGHAKIPENE 666
Query: 61 ESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWN 120
+D AKE +S P+ KR K++ LS ++W +A + ++ P
Sbjct: 667 AADLAAKEGAASTPPAPQKSSYASLKRHAKTQSLSAAQSQWQKVAPQSYQDLEITTSPKR 726
Query: 121 P 121
P
Sbjct: 727 P 727
>gi|154270402|ref|XP_001536056.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409983|gb|EDN05371.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1585
Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
+L W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1355 NLGLKWAPGHMGIEGNEEADRLAKRAVSSTA 1385
>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
Length = 466
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNIL--VKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
DS+SALQ+I N S I Q ++ +K + I L W+P H GNE ++RLA
Sbjct: 210 DSMSALQAISNTRNKSGQRIIQAVQQAAQELKARGI-PLCLQWMPGHCDNPGNEAANRLA 268
Query: 67 KEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
KEA+S + ++ K F++++I W W
Sbjct: 269 KEAVSLDKEHPFQHLLSREKGFIRNRIQEDWEQGW 303
>gi|242824730|ref|XP_002488316.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218713237|gb|EED12662.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 590
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+AT L + S S Q I F + A +R L K S+ WVP H I NE
Sbjct: 368 VATRLLSPSTGSS---QEIFESFRTLAAAWPLRKRLPHTKGG-SIQIRWVPGHAKIPENE 423
Query: 61 ESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWN 120
+D AKE +S P+ + KR+ K++ LS ++W +A + ++ P
Sbjct: 424 AADLAAKEEAASIPPAPHKSSYASLKRYSKTQSLSAAQSQWQKVAPQSYQDLEITTSPKR 483
Query: 121 P 121
P
Sbjct: 484 P 484
>gi|242821777|ref|XP_002487749.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712670|gb|EED12095.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 192
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I N+ +D AKE +S P+ + KR+ K++ LS ++W
Sbjct: 112 SIQIRWVPGHAKIPENKAADLAAKEGAASIPPAPHKSSYALLKRYAKTQSLSAAQSQWEK 171
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P P
Sbjct: 172 VAPQSYQDLEITTSPKRP 189
>gi|353245589|emb|CCA76508.1| hypothetical protein PIIN_10501 [Piriformospora indica DSM 11827]
Length = 348
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNIL------VKNKHILSLHFTWVPSHVGIVGNE 60
N S D+ +A+QSI N + NIL + + L + FTWVP H GI GNE
Sbjct: 107 NISLDNQAAIQSI-TRARPNAGQHVVENILSEIEDELSDYRRLRMEFTWVPGHEGIQGNE 165
Query: 61 ESDRLAKEALSSNS 74
+D AK+A++ +
Sbjct: 166 AADEEAKKAITEGA 179
>gi|427781947|gb|JAA56425.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDRL 65
SK +L L S S + EIR +L + H + F W+PSH GI GN+ +D
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGH--DVVFQWLPSHCGISGNDLADEA 288
Query: 66 AKEALSSNSPSVNTIPIN------YFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKR 117
A+EA S+ +IP++ Y + ++ L W T D +L + R
Sbjct: 289 AREA--HGETSLVSIPLSRIDAARYLSKLAQNMTLQMWRTS--QFTDQRLYSLDPSLR 342
>gi|154270408|ref|XP_001536059.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409986|gb|EDN05374.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1597
Score = 42.7 bits (99), Expect = 0.31, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
+L W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1455 NLGLKWAPGHMGIEGNEEADRLAKRAVSSTA 1485
>gi|390366285|ref|XP_003731007.1| PREDICTED: uncharacterized protein LOC100888188 [Strongylocentrotus
purpuratus]
Length = 509
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 27/131 (20%)
Query: 247 ARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGN 306
AR +R RR ++W +Q A+ +T G
Sbjct: 361 ARMDAKRVARRCANDYWLSLCQSIQLAADNGNT------------------------QGE 396
Query: 307 KISNKEERLERWREHFQHVFNQQTTVN---LEGIEIDPITDNLPNDERPTENEIMLETLI 363
I++KE ++ERW EH+Q +++++ VN +E IE P+ ++L ++ E + + +L
Sbjct: 397 VITDKELQMERWIEHYQELYSREIEVNEATIESIESLPVMEDLDSEPSIEELKKAVNSLS 456
Query: 364 FPKSPIKMNFP 374
K+P K P
Sbjct: 457 SGKAPGKDGVP 467
>gi|154283217|ref|XP_001542404.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410584|gb|EDN05972.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 375
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK+A+SS +
Sbjct: 186 WAPGHMGIEGNEEADRLAKQAVSSTA 211
>gi|154270335|ref|XP_001536023.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410037|gb|EDN05425.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 914
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSP---SVNTIPINYFKRFLKSKILSTWNTEWVNLA 105
W P H+GI GNEE+DRLAK A+SS + + PI R + ++ +W + A
Sbjct: 725 WAPGHMGIEGNEEADRLAKRAVSSTAAPAYGLEATPIVSGVRTVAKQLSQEARRKWWSGA 784
Query: 106 DNKL 109
KL
Sbjct: 785 CGKL 788
>gi|427798873|gb|JAA64888.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1158
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLS ++ S+ I + +R L+ H+ +L WVP H GIV NE +D LAK +L
Sbjct: 990 DSLSLCSALITPTESH-ILRLLR--LLVPHHLRNLRLIWVPGHRGIVLNEVADTLAKASL 1046
Query: 71 SSNSPSVNTIPINYF---KRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+ P + +P+ F RF ++ LS +++D + Q PW SR
Sbjct: 1047 A--GPVLALLPVTAFVAAARF-RTYALSVLTPSLASISDFQHLQF-----PW------SR 1092
Query: 128 ESNSARLPQVSLAELKV 144
+ R +V + L+
Sbjct: 1093 KWCGTRATEVVMTRLRC 1109
>gi|427781821|gb|JAA56362.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1134
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
DSLS ++ S+ I + +R L+ H+ +L WVP H GIV NE +D LAK +L
Sbjct: 910 DSLSLCSALITPTESH-ILRLLR--LLVPHHLRNLRLIWVPGHRGIVLNEVADTLAKASL 966
Query: 71 SSNSPSVNTIPINYF---KRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESR 127
+ P + +P+ F RF ++ LS +++D + Q PW SR
Sbjct: 967 A--GPVLALLPVTAFVAAARF-RTYALSVLTPSLASISDFQHLQF-----PW------SR 1012
Query: 128 ESNSARLPQVSLAELKV 144
+ R +V + L+
Sbjct: 1013 KWCGTRATEVVMTRLRC 1029
>gi|242825709|ref|XP_002488494.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
10500]
gi|218712312|gb|EED11738.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
10500]
Length = 230
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE ++S SP +TI +R K++ + T W N
Sbjct: 114 SIQVRWVPGHAKIPENETADLAAKEGVASTSPPPHTISYASLERNAKAQSFAAAQTLWQN 173
Query: 104 L 104
+
Sbjct: 174 V 174
>gi|427780533|gb|JAA55718.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 380
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDRL 65
SK +L L S S + EIR +L + H + F W+PSH GI GN+ +D
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGH--DVVFQWLPSHCGISGNDLADEA 288
Query: 66 AKEALSSNSPSVNTIPIN------YFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKR 117
A+EA S+ +IP++ Y + ++ L W T D +L + R
Sbjct: 289 AREA--HGETSLVSIPLSRIDAARYLSKLAQNMTLQMWRTS--QFTDQRLYSLDPSLR 342
>gi|242825540|ref|XP_002488462.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712280|gb|EED11706.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 892
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A +R L K S+ WVP H I NE +D KE +S P+
Sbjct: 683 QEIFESFRTLAAAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLATKEGAASIPPA 741
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPS 122
+ KR+ K++ LS ++W +A + + ++ P P
Sbjct: 742 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPHSYQDLEITTSPKRPG 787
>gi|154274438|ref|XP_001538070.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414510|gb|EDN09872.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 398
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
L W P H+GI GNEE+DRLAK A+SS +
Sbjct: 205 LGLKWAPGHMGIGGNEEADRLAKRAVSSTA 234
>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
Length = 1186
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 13/84 (15%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS---------SNSPSVN 78
IAQ+++ + K LS+ W+P+HVGI GNE +D+ AKEA P
Sbjct: 1079 IAQQVQELQNKG---LSVTVRWIPAHVGIEGNEAADQAAKEATGWREDGRRQQPAEPPPQ 1135
Query: 79 TIPI-NYFKRFLKSKILSTWNTEW 101
P+ +R+ K++ W + W
Sbjct: 1136 LYPLRTTLRRWCKTQAERQWISAW 1159
>gi|259489393|tpe|CBF89628.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 1054
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP + P Y ++ K + + T + N
Sbjct: 867 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSP-AYLRQEAKQWLRTETYTAYANK 925
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR S +LP+ L L + GD
Sbjct: 926 APETYKALNI-----RPHTKESR-SREHKLPRWVLGRLVAARTGHGDF 967
>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1838
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D+LAK
Sbjct: 1593 DNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAK 1652
Query: 68 EA 69
EA
Sbjct: 1653 EA 1654
>gi|427783063|gb|JAA56983.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHIL--------SLHFTWVPSHVGIVGNEES 62
DS +ALQS+ + P Q + I H++ + F W+PSH G++GNE +
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEI----GHLIHTSSEKGHQVTFQWLPSHCGVIGNEHA 290
Query: 63 DRLAKEALSSNSPSVNTIPIN 83
D A+ AL + V IP++
Sbjct: 291 DNAARSALQGDKEEV--IPLS 309
>gi|427779393|gb|JAA55148.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 424
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDRL 65
SK +L L S S + EIR +L + H + F W+PSH GI GN+ +D
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGH--DVVFQWLPSHCGISGNDLADEA 288
Query: 66 AKEALSSNSPSVNTIPIN------YFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKR 117
A+EA S+ +IP++ Y + ++ L W T D +L + R
Sbjct: 289 AREA--HGETSLVSIPLSRIDAARYLSKLAQNMTLQMWRTS--QFTDQRLYSLDPSLR 342
>gi|357621762|gb|EHJ73487.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 261
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALS-SNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
S+ F WV +HVGIVGNE +D K A +P I + K +S S W + +
Sbjct: 112 SIEFAWVKAHVGIVGNEAADTAVKRAAKLHKAPDYTQFLITFIKHSTRSLHTSVWQSRY 170
>gi|353227190|emb|CCA77710.1| hypothetical protein PIIN_10861, partial [Piriformospora indica DSM
11827]
Length = 530
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP 81
TWVP H GI GNE +D+ AK+A++ S + T+P
Sbjct: 411 LTWVPGHEGIEGNEAADKEAKKAITDGSSTAATLP 445
>gi|242810776|ref|XP_002485651.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218716276|gb|EED15698.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S P + KR+ K++ LS ++W
Sbjct: 409 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 468
Query: 104 LADNKLRQIKEEKRPWNPS 122
+A + ++ P P
Sbjct: 469 VAPQSYQDLEITTSPKRPG 487
>gi|154285828|ref|XP_001543709.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407350|gb|EDN02891.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 288
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 32 IRNILVKNKHILSLH----FTWVPSHVGIVGNEESDRLAKEALSSNS 74
+R I + + SL W P H+GI GNEE+DRLAK A+SS +
Sbjct: 71 LRAIALPPPCLCSLQHNVGLKWAPGHMGIEGNEEADRLAKRAVSSTA 117
>gi|154269689|ref|XP_001535782.1| hypothetical protein HCAG_09292 [Ajellomyces capsulatus NAm1]
gi|150410077|gb|EDN05465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 241 LKWAPGHMGIEGNEEADRLAKRAVSSTA 268
>gi|67524507|ref|XP_660315.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|40743929|gb|EAA63113.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|259486378|tpe|CBF84167.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 666
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GNE +D+LAK S SP++ P Y +R K + + T + +
Sbjct: 479 LQVRWIPGHSGIAGNELADKLAKLGSSIYSPNIPPSP-AYLRREAKQWLRTEAYTAYASK 537
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
A + + P ESR + +LP+ L L + GD
Sbjct: 538 APQAYKTLDIR-----PHTKESR-TREHKLPRWVLGRLVAARTGHGDF 579
>gi|358376670|dbj|GAA93204.1| hypothetical protein AKAW_11316 [Aspergillus kawachii IFO 4308]
Length = 452
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 11 DSLSALQSIQNEF--SSNPIAQEIRNILVKN-KHILSLHFTWVPSHVGIVGNEESDRLAK 67
DS+SALQ+I++ S I + I + +N + + WVP H GN+E+DRLAK
Sbjct: 92 DSMSALQAIRSPSNRSGRRIIRAILQVASRNDARGIPVRLQWVPRHCNDPGNDEADRLAK 151
Query: 68 EALS 71
EA++
Sbjct: 152 EAVA 155
>gi|407915219|gb|EKG08944.1| hypothetical protein MPH_14104, partial [Macrophomina phaseolina
MS6]
Length = 341
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTE 100
WVP HV + GNEE+DRLAK+A + P+ I ++ LK + + W ++
Sbjct: 229 WVPGHVNVHGNEEADRLAKQA-TLIPPTTEDTSIAFYGMQLKEVLYNEWKSQ 279
>gi|154277650|ref|XP_001539663.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413248|gb|EDN08631.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1411
Score = 42.0 bits (97), Expect = 0.48, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1222 WAPGHMGIEGNEEADRLAKRAVSSTA 1247
>gi|154271392|ref|XP_001536549.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409219|gb|EDN04669.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1276
Score = 42.0 bits (97), Expect = 0.48, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1051 WAPGHMGIEGNEEADRLAKRAVSSTA 1076
>gi|358334468|dbj|GAA52925.1| hypothetical protein CLF_109127 [Clonorchis sinensis]
Length = 477
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 169 LAESQEANDDGDLSSHHVTLDLANRIVQSYTGIQA-------DLKYGV--SGILSE-IMD 218
LAE Q +D G SS+ + A+ V +Y G A + G +G L I D
Sbjct: 326 LAEKQALHDSGCSSSNEFSGGTAD--VNAYWGEIATSLHNAGNFACGTAPTGALKHWISD 383
Query: 219 LVQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKND 278
++ S GLE + R+ R + + V+ RE WW +K E++E
Sbjct: 384 RTVALLKSRRNIPAGLEHNLMRR----IIRLQVKVSVQADREVWWTQKAKEMEEAQKAGS 439
Query: 279 TYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLE 316
L++ ++ A GP RK L I++D+NG IS KEER +
Sbjct: 440 AGRLFQLIR-ATGP-RKILVSGIVKDRNGVNISVKEERFD 477
>gi|386642408|emb|CCD41789.1| pol protein, partial [Simian immunodeficiency virus]
Length = 657
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 20 QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
Q EFS + + EI N LV + +++ +WVP+H GI GNEE D+L +
Sbjct: 429 QPEFSDSQLVTEIINQLVGKE---AVYLSWVPAHKGIGGNEEVDKLVSRGI 476
>gi|154273753|ref|XP_001537728.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415336|gb|EDN10689.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 292
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 3 TMLQNSSKDSLSALQSIQNEF--SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
T+ S D+ S + I+ SSN +L +H + L W P H+GI GNE
Sbjct: 31 TLRSGSGIDNTSVIWGIRGSAAASSNWAYNSCHELL--RQHNVGL--KWAPGHMGIEGNE 86
Query: 61 ESDRLAKEALSSNS 74
E+DRLAK A+SS +
Sbjct: 87 EADRLAKRAVSSTA 100
>gi|154277178|ref|XP_001539430.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413015|gb|EDN08398.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 699
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 510 WAPGHMGIEGNEEADRLAKRAVSSTA 535
>gi|37496577|emb|CAD83157.1| polymerase [Simian immunodeficiency virus Qu]
Length = 631
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 22 EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
E S +P+ ++I +L+ + S++ TWVP+H GI GNEE D+L +
Sbjct: 412 EVSDHPLVEDIIQLLLGKE---SVYLTWVPAHKGIGGNEEVDKLVSSGI 457
>gi|154276844|ref|XP_001539267.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414340|gb|EDN09705.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 919
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 730 WAPGHMGIEGNEEADRLAKRAVSSTA 755
>gi|154287920|ref|XP_001544755.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408396|gb|EDN03937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 787
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 598 WAPGHMGIEGNEEADRLAKRAVSSTA 623
>gi|407920660|gb|EKG13846.1| hypothetical protein MPH_08978 [Macrophomina phaseolina MS6]
Length = 606
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 32 IRNILVK----NKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
+R+I+ K + + + F WVPSH G+ GNEE+DRLAK A
Sbjct: 387 LRSIIAKLIGLQQQGVLIEFHWVPSHQGVPGNEEADRLAKAA 428
>gi|242805992|ref|XP_002484649.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715274|gb|EED14696.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 435
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
WVP H I GNE +D AKE P+ + FKR KS+ S T W
Sbjct: 257 WVPGHANIPGNEAADCAAKEGAGKTVPTSHPWSYAAFKRHTKSQAASRAQTYW 309
>gi|154287968|ref|XP_001544779.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408420|gb|EDN03961.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 787
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 598 WAPGHMGIEGNEEADRLAKRAVSSTA 623
>gi|242770758|ref|XP_002342044.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218725240|gb|EED24657.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 208
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE S SPS KR+ K++ LS T W
Sbjct: 143 SIQIRWVPGHTKIPENEAADLAAKEKAVSISPSPYKSSYASLKRYTKTQSLSAAQTRWQT 202
Query: 104 LA 105
+A
Sbjct: 203 IA 204
>gi|83775366|dbj|BAE65488.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1187
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DS +A+Q+IQN S I +I I+ + + W+P+H+G+ GNE +D A+E
Sbjct: 957 DSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAADEAARE 1016
Query: 69 AL-------SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEK 116
+ + + +R +K + + W TE +L ++ +K
Sbjct: 1017 GATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGPTTYRLVEVPNKK 1071
>gi|321462343|gb|EFX73367.1| hypothetical protein DAPPUDRAFT_253251 [Daphnia pulex]
Length = 159
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 7 NSSKDSLSALQSIQNE-FSSNPIAQEIRNILVKNKHILS----LHFTWVPSHVGIVGNEE 61
N DSL+++ +I N+ S+ + ++IR + ++LS +F W+PSHV I GNE
Sbjct: 82 NIFSDSLASVMAIHNQRVDSHHLIKDIRQTV---SNLLSSGTRTNFIWIPSHVTIPGNER 138
Query: 62 SDRLAKEALSSN-SPSVN 78
+D LA + LS SPS +
Sbjct: 139 ADELATQCLSDPVSPSFD 156
>gi|154276786|ref|XP_001539238.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414311|gb|EDN09676.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 935
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 746 WAPGHMGIEGNEEADRLAKRAVSSTA 771
>gi|154282135|ref|XP_001541880.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412059|gb|EDN07447.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 844
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 655 WAPGHMGIEGNEEADRLAKRAVSSTA 680
>gi|154281239|ref|XP_001541432.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411611|gb|EDN06999.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1183
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 994 WAPGHMGIEGNEEADRLAKRAVSSTA 1019
>gi|154277140|ref|XP_001539411.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412996|gb|EDN08379.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1128
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 939 WAPGHMGIEGNEEADRLAKRAVSSTA 964
>gi|154273424|ref|XP_001537564.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150416076|gb|EDN11420.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1153
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 964 WAPGHMGIEGNEEADRLAKRAVSSTA 989
>gi|154279334|ref|XP_001540480.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412423|gb|EDN07810.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 666
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 477 WAPGHMGIEGNEEADRLAKRAVSSTA 502
>gi|154275176|ref|XP_001538439.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414879|gb|EDN10241.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 244 WAPGHMGIEGNEEADRLAKRAVSSTA 269
>gi|154275794|ref|XP_001538742.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413815|gb|EDN09180.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1621
Score = 42.0 bits (97), Expect = 0.53, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1432 WAPGHMGIEGNEEADRLAKRAVSSTA 1457
>gi|154272902|ref|XP_001537303.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415815|gb|EDN11159.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 970
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 781 WAPGHMGIEGNEEADRLAKRAVSSTA 806
>gi|154287174|ref|XP_001544382.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408023|gb|EDN03564.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 244 WAPGHMGIEGNEEADRLAKRAVSSTA 269
>gi|154271959|ref|XP_001536832.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408819|gb|EDN04275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1338
Score = 42.0 bits (97), Expect = 0.53, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1149 WAPGHMGIEGNEEADRLAKRAVSSTA 1174
>gi|154274369|ref|XP_001538036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415644|gb|EDN10997.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1174
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 985 WAPGHMGIEGNEEADRLAKRAVSSTA 1010
>gi|154270264|ref|XP_001535988.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410059|gb|EDN05447.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 254
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 68 WAPGHMGIEGNEEADRLAKRAVSSTA 93
>gi|154287184|ref|XP_001544387.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408028|gb|EDN03569.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 281
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 46 WAPGHMGIEGNEEADRLAKRAVSSTA 71
>gi|317157858|ref|XP_001826621.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1012
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DS +A+Q+IQN S I +I I+ + + W+P+H+G+ GNE +D A+E
Sbjct: 782 DSQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAADEAARE 841
Query: 69 AL-------SSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEK 116
+ + + +R +K + + W TE +L ++ +K
Sbjct: 842 GATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGPTTYRLVEVPNKK 896
>gi|242807803|ref|XP_002485032.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715657|gb|EED15079.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 550
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFL---KSKILSTWNTEWVNL 104
WVP H G+VGNE++D+ AK A S +P + + Y +R + +S W +N
Sbjct: 301 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVRRACTEARRAAVSEWAR--INA 358
Query: 105 ADNKLRQIKEEKRP--WN 120
+ R + K P WN
Sbjct: 359 VQGRHRDGRVYKMPRGWN 376
>gi|154273178|ref|XP_001537441.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415953|gb|EDN11297.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 529
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 340 WAPGHMGIEGNEEADRLAKRAVSSTA 365
>gi|154281205|ref|XP_001541415.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411594|gb|EDN06982.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 624
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 428 WAPGHMGIEGNEEADRLAKRAVSSTA 453
>gi|154287834|ref|XP_001544712.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408353|gb|EDN03894.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1110
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 921 WAPGHMGIEGNEEADRLAKRAVSSTA 946
>gi|357617567|gb|EHJ70865.1| endonuclease-reverse transcriptase [Danaus plexippus]
Length = 571
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 294 RKPLNIIEDKNGNKISNKEERLERWREHFQHVF-------NQQTTVNLEGIEIDPITDNL 346
+KPL +DK G I+ E +L+RWREHF+ +F T NL + +D D
Sbjct: 16 KKPL---KDKRGELIATSEGQLQRWREHFEEIFQVSNSPITPTTAANLPAVSLD--IDES 70
Query: 347 PNDERPTENEIM 358
P PTE E++
Sbjct: 71 P----PTEEEVV 78
>gi|154281309|ref|XP_001541467.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150411646|gb|EDN07034.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 42.0 bits (97), Expect = 0.55, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1494 WAPGHMGIEGNEEADRLAKRAVSSTA 1519
>gi|154285824|ref|XP_001543707.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407348|gb|EDN02889.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 226
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 37 WAPGHMGIEGNEEADRLAKRAVSSTA 62
>gi|154282145|ref|XP_001541885.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412064|gb|EDN07452.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1278
Score = 42.0 bits (97), Expect = 0.55, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1081 WAPGHMGIEGNEEADRLAKRAVSSTA 1106
>gi|154272780|ref|XP_001537242.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415754|gb|EDN11098.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 306
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 117 WAPGHMGIEGNEEADRLAKRAVSSTA 142
>gi|154271472|ref|XP_001536589.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409259|gb|EDN04709.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1184
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 995 WAPGHMGIEGNEEADRLAKRAVSSTA 1020
>gi|154277392|ref|XP_001539537.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413122|gb|EDN08505.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 375
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 186 WAPGHMGIEGNEEADRLAKRAVSSTA 211
>gi|154269949|ref|XP_001535860.1| hypothetical protein HCAG_09207 [Ajellomyces capsulatus NAm1]
gi|150414478|gb|EDN09841.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 406
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 217 WAPGHMGIEGNEEADRLAKRAVSSTA 242
>gi|154270331|ref|XP_001536021.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410035|gb|EDN05423.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 590
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 510 WAPGHMGIEGNEEADRLAKRAVSSTA 535
>gi|154272642|ref|XP_001537173.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415685|gb|EDN11029.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 360
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 171 WAPGHMGIEGNEEADRLAKRAVSSTA 196
>gi|154280733|ref|XP_001541179.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411358|gb|EDN06746.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 650
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 461 WAPGHMGIEGNEEADRLAKRAVSSTA 486
>gi|154271390|ref|XP_001536548.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409218|gb|EDN04668.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 543
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 354 WAPGHMGIEGNEEADRLAKRAVSSTA 379
>gi|154283763|ref|XP_001542677.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410857|gb|EDN06245.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 709
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 513 WAPGHMGIEGNEEADRLAKRAVSSTA 538
>gi|386642402|emb|CCD41786.1| pol protein, partial [Simian immunodeficiency virus]
Length = 518
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 20 QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
Q EFS + + EI N L+ + +++ +WVP+H GI GNEE D+L +
Sbjct: 435 QPEFSDSKLVTEIINQLIGKE---AVYLSWVPAHKGIGGNEEVDKLVSRGI 482
>gi|242826269|ref|XP_002488606.1| endonuclease/reverse transcriptase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712424|gb|EED11850.1| endonuclease/reverse transcriptase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 780
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + A R L K S+ WVP H I NE +D AKE +S P+
Sbjct: 606 QEIFESFRTLAAAWPFRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLAAKEGAASIPPA 664
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLA 105
+ KR+ K++ LS ++W +A
Sbjct: 665 PHKSSYASLKRYAKTQSLSAAQSQWEKVA 693
>gi|154287246|ref|XP_001544418.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408059|gb|EDN03600.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 362
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 173 WAPGHMGIEGNEEADRLAKRAVSSTA 198
>gi|154284596|ref|XP_001543093.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150406734|gb|EDN02275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 808
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 616 WAPGHMGIEGNEEADRLAKRAVSSTA 641
>gi|154282433|ref|XP_001542012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410192|gb|EDN05580.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1357
Score = 42.0 bits (97), Expect = 0.59, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 1168 WAPGHMGIEGNEEADRLAKRAVSSTA 1193
>gi|400595699|gb|EJP63491.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 560
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 39 NKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP-INYFKRFLKSKILSTW 97
+ H + W P H GI GNE +D+LAKE S+ P + +P ++Y +R ++S + +
Sbjct: 373 DAHPGMIRVRWCPGHTGIEGNELADQLAKE--SAKMPVGDNLPTVSYCRRHMRSLLAIAF 430
Query: 98 NTEWVNLADNKLR--QIKEE 115
W + R Q+K E
Sbjct: 431 QRWWDKIDRETYRGLQLKAE 450
>gi|87083822|gb|ABD19484.1| pol protein [Simian immunodeficiency virus]
Length = 1006
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S + Q I N++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGILQAQPDQSDSELVNQIIENLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|154269728|ref|XP_001535793.1| hypothetical protein HCAG_09281 [Ajellomyces capsulatus NAm1]
gi|150410047|gb|EDN05435.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 360
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSP---SVNTIPINYFKRFLKSKILSTWNTEWVNLA 105
W P H+GI GNEE+DRLAK A+SS + + PI R + ++ +W + A
Sbjct: 168 WAPGHMGIEGNEEADRLAKRAVSSTAAPAYGLEATPIVSGVRTVAKQLSQEARRKWWSGA 227
Query: 106 DNKLRQIKEEKRPWN---PSL-HESRESNSARLPQVSLAELKVIQETLGDL 152
KL + R W+ P++ ++ + +P+ +L ++ + GD
Sbjct: 228 CGKL---SDWYRGWSFSRPTVEYQVKAPPELTMPRHALHRWLALRSSHGDF 275
>gi|154283279|ref|XP_001542435.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410615|gb|EDN06003.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 351
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 155 WAPGHMGIEGNEEADRLAKRAVSSTA 180
>gi|154273212|ref|XP_001537458.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415970|gb|EDN11314.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 265
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 76 WAPGHMGIEGNEEADRLAKRAVSSTA 101
>gi|358338066|dbj|GAA56396.1| hypothetical protein CLF_110807 [Clonorchis sinensis]
Length = 160
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 270 LQEFANKNDTYNLYRGMKSAVGPIRKPL--NIIEDKNGNKISNKEERLERWREHFQHVFN 327
+++ N + L+ ++S GP RKPL I D+NG+ I NK ERL+RW ++F+ F+
Sbjct: 1 MEDAKNAGNVRRLFHLIRS-TGP-RKPLVSETIRDQNGSLICNKAERLDRWAQYFEQQFS 58
>gi|358254118|dbj|GAA54148.1| ubiquitin thioesterase protein OTUB1 [Clonorchis sinensis]
Length = 529
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 262 WWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLERWRE 320
WW +K E++E + +++ ++ P + P++ I+D+NG ISN+ ERL+R E
Sbjct: 2 WWTQKAREMEEAKKAGNARRVFQLIRE-TSPRKPPVSETIKDRNGVTISNEGERLDRRAE 60
Query: 321 HFQHVFNQQTTVNLEGIEIDP 341
+F+ QQ + G ++P
Sbjct: 61 YFE----QQLSWPPAGAHLEP 77
>gi|407915263|gb|EKG08960.1| hypothetical protein MPH_14085 [Macrophomina phaseolina MS6]
Length = 454
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
D+ S +Q I ++ +Q R + + + + W P H+GI GNEE+D+LAK A+
Sbjct: 241 DNTSVIQGIDGHTPASSQSQFTRLKSTRQELPIPVETRWCPGHMGITGNEEADQLAKAAI 300
Query: 71 S 71
Sbjct: 301 G 301
>gi|322711772|gb|EFZ03345.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1090
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
W+P H I GNE++D LAK S +P + + +R + + ++ W A +
Sbjct: 681 WIPGHTNIAGNEQADALAKAGCSRPAPPDALPTLVHLRRVARKQPREAFDAWWTTAAPER 740
Query: 109 LRQIK 113
+ +K
Sbjct: 741 YKPLK 745
>gi|331216904|ref|XP_003321131.1| hypothetical protein PGTG_02173 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 672
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 NILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
NIL+ + H S+ W P+HVGI NE+ D+LAKEA N+
Sbjct: 508 NILITDFH-FSISLLWCPAHVGIPENEKVDQLAKEATEGNT 547
>gi|331249470|ref|XP_003337352.1| hypothetical protein PGTG_19051 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 890
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 34 NILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
NIL+ + H S+ W P+HVGI NE+ D+LAKEA N+
Sbjct: 726 NILITDFH-FSISLLWCPAHVGIPENEKVDQLAKEATEGNT 765
>gi|29367081|gb|AAO22475.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L L + ++ S NPI +EI +++ + I + +WVP+H GI GNE+ D+L +
Sbjct: 667 SQYALGILSAAPDQ-SDNPIVREIIELMIGKEEI---YLSWVPAHKGIGGNEQIDKLVSK 722
Query: 69 AL 70
+
Sbjct: 723 GI 724
>gi|427782051|gb|JAA56477.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 43/188 (22%)
Query: 25 SNPIAQEIRNILVKNKH------ILSLH-----------FTWVPSHVGIVGNEESDRLAK 67
S P Q +R++L + H I+ LH F W+P H GI GN +D A+
Sbjct: 231 SKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAAR 290
Query: 68 EALSSNSPSVNTIPI--------NYFKRFLKSKILSTWNTEWVNLADNKLRQIKE--EKR 117
+ + T+PI + + +S L+ WNT ++ +L QI E R
Sbjct: 291 TSHEQET----TVPIPLSRTDAASQLRHLARSLCLAEWNTP--SIRHTRLHQINPTLELR 344
Query: 118 PWNPSLHESRESNSARLPQVSLAELKVIQETLG-----DLERQG---DLDLDLCDSWRNL 169
P LH S RL + +A K +G E G D+D LC R
Sbjct: 345 P-PAGLHRREASLLCRL-WLGVAFTKAYTTLIGVTDSAVCEACGTEEDIDHLLCRCPRFA 402
Query: 170 AESQEAND 177
+E + +D
Sbjct: 403 SERRTLSD 410
>gi|242763335|ref|XP_002340555.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218723751|gb|EED23168.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 189
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 17 QSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
Q I F + +A +R L K S+ WVP H I NE +D KE + P+
Sbjct: 43 QEIFEFFCTLAVAWPLRKRLPHTKSG-SIQIRWVPGHAKIPENEAADLATKEGATLIPPA 101
Query: 77 VNTIPINYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNP 121
+ KR+ K++ LS ++W +A + ++ P P
Sbjct: 102 PHKSSYASLKRYAKTQSLSAAQSQWEKVAPQSYQDLEITTSPKRP 146
>gi|427798823|gb|JAA64863.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 97
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADN 107
WV H I GN +D+LA A + + + IP+ K FLK K W + W N
Sbjct: 8 CWVLGHHKIQGNVLADQLAASAHENTADTSIPIPVLDLKPFLKRKPRDYWQSSWERHTQN 67
Query: 108 KLRQIKEEKR--PWNPSLHESRE 128
KL IK ++ +PS+ RE
Sbjct: 68 KLNVIKPHRQQISLHPSMFIGRE 90
>gi|358333912|dbj|GAA52368.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 430
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 271 QEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNKISNKEERLERWREHFQ 323
Q+ N + L R P+ + I+D+NG ISNKEERL+RW E+F+
Sbjct: 5 QKAGNARRLFQLIRATGIGKPPVSE---TIKDRNGVTISNKEERLDRWAEYFE 54
>gi|427792791|gb|JAA61847.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 650
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 11 DSLSALQSIQNEF----SSNPIAQEIRNILV---KNKHILSLHFTWVPSHVGIVGNEESD 63
DS ALQ I N + +P+ EI +L ++ H ++L W+PSH GI GNE++D
Sbjct: 424 DSKPALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQ--WIPSHCGIAGNEQAD 481
Query: 64 RLAKEA 69
AK A
Sbjct: 482 AEAKMA 487
>gi|427782325|gb|JAA56614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1173
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 11 DSLSALQSIQNEF----SSNPIAQEIRNILV---KNKHILSLHFTWVPSHVGIVGNEESD 63
DS ALQ I N + +P+ EI +L ++ H ++L W+PSH GI GNE++D
Sbjct: 947 DSKPALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQ--WIPSHCGIAGNEQAD 1004
Query: 64 RLAKEA 69
AK A
Sbjct: 1005 AEAKMA 1010
>gi|158534847|gb|ABW72065.1| TE1b [Blumeria graminis f. sp. hordei]
Length = 894
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSP----SVNTIPINYFKRFLKSK---ILSTWNTEW 101
W+P+H GI GNEE+DR A+ S N P ++ + Y +R + K +L W E
Sbjct: 706 WIPAHSGIEGNEEADRAARFRASGNLPIKESQPGSVTLAYVRRLMNQKRQALLDDWWEES 765
Query: 102 VNLADNKLRQIKEEKRPWNPSLHES--RESNSAR 133
KL + ++P +L RE SAR
Sbjct: 766 CPPRYRKLCLLMRRRKPREQTLSRRLLRELISAR 799
>gi|154269790|ref|XP_001535810.1| hypothetical protein HCAG_09260 [Ajellomyces capsulatus NAm1]
gi|150409831|gb|EDN05270.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 279
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A+SS +
Sbjct: 93 WAPGHMGIEGNEEADRLAKRAVSSTA 118
>gi|358339655|dbj|GAA47674.1| hypothetical protein CLF_100662 [Clonorchis sinensis]
Length = 1110
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLER 317
RE WW +K E++E + L + + A GP + P++ I+D ISNKEERL+R
Sbjct: 248 REVWWTQKAKEMEEAQKAGNARRLSQ-LIHATGPRKPPVSEAIKDGKEVTISNKEERLDR 306
Query: 318 W 318
+
Sbjct: 307 F 307
>gi|87137496|gb|ABD27963.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S + Q I N++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 53 SQYALGILQAQPDQSDSELVNQIIENLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 108
Query: 69 AL 70
+
Sbjct: 109 GI 110
>gi|727181|gb|AAA64258.1| pol [Simian immunodeficiency virus]
Length = 1049
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQ--SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS A+ + Q S +P+ ++I ++VK + +++ WVP+H GI GNEE D+
Sbjct: 681 NIVTDSQYAMGILTAQPTQSDSPLVEQIIALMVKKR---AIYLQWVPAHKGIGGNEEIDK 737
Query: 65 LAKEAL 70
L + +
Sbjct: 738 LVSQGI 743
>gi|154271895|ref|XP_001536800.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408787|gb|EDN04243.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 433
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSN 73
W P H+GI GNEE+DRLAK A+SS
Sbjct: 244 WAPGHMGIEGNEEADRLAKRAVSST 268
>gi|242801861|ref|XP_002483856.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717201|gb|EED16622.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 242
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AK+ +S S + KR+ K++ L+ T W +
Sbjct: 71 SIQIRWVPGHAKIPENEAADLAAKQGAASTSSPPHKSSYASLKRYAKARALTAAQTLWQS 130
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + + P +P
Sbjct: 131 VAPQTYQDLGITTSPKHP 148
>gi|358340095|dbj|GAA48060.1| trimeric intracellular cation channel type B-A [Clonorchis
sinensis]
Length = 362
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 15/101 (14%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
+ + + V+ RE WW +K E++E + + GP P++ I+ +NG
Sbjct: 268 KHQMKMSVQADREVWWTRKAKEMEEARRSLE-------LIPESGPWIPPVSETIKHRNGM 320
Query: 307 KISNKEERLERWREHFQHVFNQ-------QTTVNLEGIEID 340
I +KEERLE W E+F+ + +TTV++E +++
Sbjct: 321 TILSKEERLEPWAEYFEQQLSWPPASTHLETTVDVEPWKVN 361
>gi|242803300|ref|XP_002484146.1| hypothetical protein TSTA_019730 [Talaromyces stipitatus ATCC
10500]
gi|218717491|gb|EED16912.1| hypothetical protein TSTA_019730 [Talaromyces stipitatus ATCC
10500]
Length = 614
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 15 ALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
+ Q I F + A +R L K S+ WVP H I NE +D AKE +S
Sbjct: 195 SFQEIFKSFRTLAAAWPLRKRLPHTKS-GSIQIRWVPGHAKIPENEVADLAAKEGAASTP 253
Query: 75 PSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKL 109
P+ + KR K++ LS ++W A+ +
Sbjct: 254 PAPHKSSYASLKRHAKTQSLSAAQSQWQKKAEESV 288
>gi|27311168|ref|NP_758887.1| pol protein [Simian immunodeficiency virus SIV-mnd 2]
gi|26557008|gb|AAM08706.2|AF367411_2 pol protein [Simian immunodeficiency virus SIV-mnd 2]
Length = 1010
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S NPI +EI +++ H +++ WVP+H GI GNE+ D+L +
Sbjct: 680 SDNPIVREIIELMI---HKEAVYLAWVPAHKGIGGNEQVDKLVSRGV 723
>gi|242811449|ref|XP_002485751.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714090|gb|EED13513.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE S PS+ KR+ K++ LS T W
Sbjct: 138 SIQIRWVPGHTKIPENEAADLTAKEGAISIPPSLYKSSYASLKRYAKTQSLSAAQTRWQT 197
Query: 104 LA 105
+A
Sbjct: 198 VA 199
>gi|15055097|gb|AAK82844.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQ--SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL S + S NPI +EI N ++ + +++ WVP+H GI GNE+ D+
Sbjct: 662 NIVTDSQYALGILSATPDRSDNPIVREIINQMIAKE---AVYLAWVPAHKGIGGNEQIDK 718
Query: 65 LAKEAL 70
L + +
Sbjct: 719 LVSKGI 724
>gi|242789382|ref|XP_002481348.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717936|gb|EED17356.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 258
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I N+ +D AKE S PS KR+ K++ LS T W
Sbjct: 138 SIQIRWVPGHTKISENKVADLAAKEGAISIPPSPYKSSYASLKRYAKTQSLSAAQTRWQT 197
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P P
Sbjct: 198 IAPQTYQDLEITTSPKRP 215
>gi|328834120|gb|AEB52565.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+D+L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 658 SQDALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQIDKLVSS 713
Query: 69 AL 70
+
Sbjct: 714 GI 715
>gi|37728012|gb|AAR02377.1| pol protein [Simian immunodeficiency virus]
Length = 1017
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 22 EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
E S +PI + I L+K + +WVP+H GI GNEE DRL + +
Sbjct: 673 EISESPIVEAIIQELLKKDQVF---LSWVPAHKGIGGNEEVDRLVGQGI 718
>gi|154274337|ref|XP_001538020.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415628|gb|EDN10981.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1128
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+DRLAK A SS +
Sbjct: 939 WAPGHMGIEGNEEADRLAKRAASSTA 964
>gi|29243009|emb|CAD70671.1| Pol protein [Simian immunodeficiency virus - mon]
Length = 936
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 22 EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
E S +PI ++I L+ K + + +WVP+H GI GNEE D+L + +
Sbjct: 592 EVSESPIVEKIIQQLLGKKQV---YLSWVPAHKGIGGNEEVDKLVSQGI 637
>gi|3776305|gb|AAC64711.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+
Sbjct: 494 NIVTDSQYALGIISSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDK 550
Query: 65 LA 66
L
Sbjct: 551 LV 552
>gi|341571891|gb|AEK79579.1| pol protein [Simian immunodeficiency virus]
Length = 297
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 7 NSSKDSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS A+ +Q + S +P+ Q+I +LVK + ++ WVP+H G+ GN+E D+
Sbjct: 48 NIVTDSQYAMGVLQGHPDQSDSPLVQQIIELLVKKE---GVYLAWVPAHKGVGGNQEVDK 104
Query: 65 L 65
L
Sbjct: 105 L 105
>gi|242825355|ref|XP_002488423.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712241|gb|EED11667.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1181
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKR 87
WVP H G+VGNE++D+ AK A S +P + + Y +R
Sbjct: 979 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVRR 1018
>gi|353241646|emb|CCA73447.1| hypothetical protein PIIN_07401 [Piriformospora indica DSM 11827]
Length = 1244
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWV 102
L + FTWVP H G+ GNE +D AK+A++ + ++ P + ++ L S LS E
Sbjct: 1044 LRIEFTWVPGHEGVQGNEAADEEAKKAITEGASGLSEHP-KWLRKPLPSN-LSAAKQECK 1101
Query: 103 NLADNKLRQI 112
LA + R++
Sbjct: 1102 RLAKEEAREL 1111
>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1776
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D LAK
Sbjct: 1528 DNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAK 1587
Query: 68 EA 69
EA
Sbjct: 1588 EA 1589
>gi|425780653|gb|EKV18659.1| hypothetical protein PDIG_09730 [Penicillium digitatum PHI26]
Length = 501
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 24/124 (19%)
Query: 11 DSLSALQSIQN------EFSSNPIAQEIRNILVKNK-----HILSLHFTWVPSHVGIVGN 59
DS +A+Q++QN ++ I +R I +N+ I+++ W+P+HVG+ GN
Sbjct: 233 DSQAAIQAVQNPKRPSGQYILTRIYDHLRAIRSRNQVQQEPTIVTIR--WIPAHVGVSGN 290
Query: 60 EESDRLAKEA----------LSSNSPSVNTIPI-NYFKRFLKSKILSTWNTEWVNLADNK 108
E +D AK A S P TI + KR ++ ++ W E + +
Sbjct: 291 EYADTEAKGAALLGAGIGTTTGSGDPGRPTIRLAAAAKRAVRQRVRERWERETTSAPTKR 350
Query: 109 LRQI 112
L Q+
Sbjct: 351 LVQV 354
>gi|242806255|ref|XP_002484707.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715332|gb|EED14754.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 178
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE S PS KR+ K++ LS T W
Sbjct: 113 SIQIRWVPRHTKIPKNEAADLAAKEGAVSIPPSPYKSSYALLKRYAKTQSLSATQTRWQT 172
Query: 104 LA 105
+A
Sbjct: 173 VA 174
>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D LAK
Sbjct: 1503 DNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLAK 1562
Query: 68 EA 69
EA
Sbjct: 1563 EA 1564
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+
Sbjct: 1080 NIVTDSQYALGVISSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDK 1136
Query: 65 LA 66
L
Sbjct: 1137 LV 1138
>gi|395455290|gb|AFN61990.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|451170523|gb|AGF32924.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|322782100|gb|EFZ10335.1| hypothetical protein SINV_09428 [Solenopsis invicta]
Length = 225
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEA 69
L + W+P+HVGI GNE++D AKEA
Sbjct: 4 LKVTLVWIPAHVGIAGNEKADETAKEA 30
>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D LAK
Sbjct: 1517 DNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAK 1576
Query: 68 EA 69
EA
Sbjct: 1577 EA 1578
>gi|427784671|gb|JAA57787.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 434
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 10/79 (12%)
Query: 11 DSLSALQSIQNEFSSNP---IAQEI---RNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS ALQ I + P +AQE+ ++ +K+ H + + W+P H G+ GNE++D
Sbjct: 211 DSKPALQIIYSALRRGPYYLLAQEVAESHDVALKSGHRIG--YQWIPGHCGLHGNEQADA 268
Query: 65 LAKEALSSNSPSVNTIPIN 83
AK ++ ++ ++ TIP +
Sbjct: 269 EAK--MAHDNAAILTIPFS 285
>gi|992561|gb|AAA99879.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1027
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+
Sbjct: 663 NIVTDSQYALGVISSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDK 719
Query: 65 LA 66
L
Sbjct: 720 LV 721
>gi|242821171|ref|XP_002487626.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712547|gb|EED11972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 372
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D KE +S P+ + KR+ K++ LS ++W
Sbjct: 189 SIQIRWVPGHAKIPENEAADLTTKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 248
Query: 104 LADNKLRQIKEEKRPWNP 121
+A + ++ P P
Sbjct: 249 VAPQSYQDLEITTSPKRP 266
>gi|284192169|gb|ADB82804.1| pol protein [Simian immunodeficiency virus]
Length = 749
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L L + ++ S NPI +EI ++++ + ++ WVP+H GI GNE D+L +
Sbjct: 508 SQYALGILSACPDQ-SDNPIVREIIELMIQKE---GVYLAWVPAHKGIGGNEHIDKLVSK 563
Query: 69 AL 70
+
Sbjct: 564 GI 565
>gi|327458297|gb|AEA76588.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|327458295|gb|AEA76587.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|242801970|ref|XP_002483880.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218717225|gb|EED16646.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 326
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S PS KR K++ LS T W
Sbjct: 261 SVQIRWVPGHTKIPENEVADSAAKEGAASTLPSPCKSLYASLKRHAKTQSLSAAQTRWQT 320
Query: 104 LA 105
+A
Sbjct: 321 IA 322
>gi|242825408|ref|XP_002488434.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712252|gb|EED11678.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 906
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKR 87
WVP H G+VGNE++D+ AK A S +P + + Y +R
Sbjct: 687 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVRR 726
>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D LAK
Sbjct: 1517 DNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLAK 1576
Query: 68 EA 69
EA
Sbjct: 1577 EA 1578
>gi|427780715|gb|JAA55809.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI-LVKNKHILSLH---FTWVPSHVGIVGNEESD--- 63
DS +ALQ I + F P Q + +I ++ ++ + H + W+P H GI GN+ +D
Sbjct: 256 DSKAALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHCGIYGNDRADEAA 315
Query: 64 RLAKEALSSNS-PSVNTIPINYFKRFLKSKILSTWN-TEWVN 103
R A +AL + P T + + L+ W+ TE+ N
Sbjct: 316 RSAHDALHCAAIPLSRTDAATRLRSLARELTLAQWHSTEFTN 357
>gi|256011278|gb|ACU55495.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306478125|gb|ADM89437.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 510
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D LAK
Sbjct: 262 DNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAK 321
Query: 68 EA 69
EA
Sbjct: 322 EA 323
>gi|37221479|gb|AAQ89868.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAKPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221483|gb|AAQ89870.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAKPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|407925622|gb|EKG18611.1| hypothetical protein MPH_04146, partial [Macrophomina phaseolina
MS6]
Length = 303
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
WVP HV + GNEE+D LAK+A ++ P + + Y+ +K ++ W W
Sbjct: 10 WVPGHVNVHGNEEADLLAKKA-ATLPPDTDRPSLVYYGMQVKGRLYDEWENRW 61
>gi|383859911|ref|XP_003705435.1| PREDICTED: armadillo repeat-containing protein 4-like [Megachile
rotundata]
Length = 999
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 1 MATMLQNSSKDSLSALQSI------QNEFSSNPIAQEIRNILVKNKHILS----LHFTWV 50
MA L N +K+S S L+++ Q FS + +EI+ L + + S + F W+
Sbjct: 772 MAVNLANKAKNSFSVLEALDGRVFCQRSFS---LLKEIKEELNAFETLASPGRRIAFVWI 828
Query: 51 PSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
PS+ GI+ NE +D AK A + + +P F LK + + W+ A +K
Sbjct: 829 PSYRGILNNERADAAAKLASNISGEFNFKVPYTDFSPILKDIMWKNSISRWLGEAASK 886
>gi|306478103|gb|ADM89426.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|242797738|ref|XP_002483023.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716368|gb|EED15789.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 384
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEW 101
S+ WVP H I GNE +D+ AKE ++ +PS +++P +Y KR KS T W
Sbjct: 203 SIRIRWVPGHADIPGNEAADQAAKEG-ANKTPS-SSLPWSYAALKRHTKSHDFLKAQTHW 260
Query: 102 VNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
+ A + ++ P R +LP L + + GD
Sbjct: 261 QSAAPQAYQDLEITTFP--------RRPEELKLPHPLLGRILAARSKHGDF 303
>gi|427779633|gb|JAA55268.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 534
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI-LVKNKHILSLH---FTWVPSHVGIVGNEESD--- 63
DS +ALQ I + F P Q + +I ++ ++ + H + W+P H GI GN+ +D
Sbjct: 309 DSKAALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHCGIYGNDRADEAA 368
Query: 64 RLAKEALSSNS-PSVNTIPINYFKRFLKSKILSTWN-TEWVN 103
R A +AL + P T + + L+ W+ TE+ N
Sbjct: 369 RSAHDALHCAAIPLSRTDAATRLRSLARELTLAQWHSTEFTN 410
>gi|427782519|gb|JAA56711.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI------LVKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS +ALQS+ + Q + I L++ H ++ F W+PSH GI+GNE +D+
Sbjct: 235 DSKAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQIT--FQWLPSHCGIIGNERADQ 292
Query: 65 LAKEALSSNS 74
A+ A + +S
Sbjct: 293 AARSAHTESS 302
>gi|407915598|gb|EKG09164.1| hypothetical protein MPH_13848 [Macrophomina phaseolina MS6]
Length = 275
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
D+ S +Q I ++ +Q R + + + + W P H+GI GNEE+D+LAK A+
Sbjct: 62 DNTSVIQGIDGHTPASSQSQFTRLKSTRQELRIPVETRWCPGHMGITGNEEADQLAKAAI 121
>gi|289187341|gb|ADC92249.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+
Sbjct: 646 NIVTDSQYALGIISSQPTQSDSPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDK 702
Query: 65 LA 66
L
Sbjct: 703 LV 704
>gi|49574294|gb|AAT66818.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|49574260|gb|AAT66801.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|353247791|emb|CCA77176.1| hypothetical protein PIIN_11158 [Piriformospora indica DSM 11827]
Length = 321
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP 81
TWVP H GI GN+ +D AK+A++ S + T+P
Sbjct: 121 LTWVPGHEGIKGNKAADEEAKKAITDGSSTAATLP 155
>gi|49574296|gb|AAT66819.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|376406742|gb|AFB38857.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+D+L +Q+ + S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 653 SQDALGIIQAQPDRSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|353245275|emb|CCA76308.1| hypothetical protein PIIN_10303 [Piriformospora indica DSM 11827]
Length = 199
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 4 MLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS------LHFTWVPSHVGIV 57
++ + + SLS +++ E ++ QE R + + LS + W+P H
Sbjct: 3 LIHSKACASLSCFNTVRREITALRTEQERRELAESSDDALSDTVTSRMELMWLPGHEAAE 62
Query: 58 GNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILS 95
GNE +D+ AK+A++ + S + +P + + L + +L+
Sbjct: 63 GNEAADKEAKKAITEGTSSRDDLP-GWLRHSLPANLLA 99
>gi|342882456|gb|EGU83132.1| hypothetical protein FOXB_06354 [Fusarium oxysporum Fo5176]
Length = 428
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
WVP H I G E++D+LAK A S P + Y +R + K + + W A +
Sbjct: 5 WVPGHTNIPGKEQADKLAKAASSLPEPEGARPTLAYLRRVARQKPKEGFESWWATTAPEQ 64
Query: 109 LRQI 112
+++
Sbjct: 65 YKRL 68
>gi|427783467|gb|JAA57185.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 628
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWV 102
LSLH W+PSHVGI GNEE+D AK A S++P N + ++ + R ++L T + + +
Sbjct: 454 LSLH--WLPSHVGIAGNEEADAAAKAAHHSDTPVTNAVALSDYSRQRLRQLLPTAHPD-M 510
Query: 103 NLADNK 108
+A K
Sbjct: 511 RMASGK 516
>gi|49574262|gb|AAT66802.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306478249|gb|ADM89499.1| pol protein [Human immunodeficiency virus 1]
Length = 710
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 361 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 416
Query: 69 AL 70
+
Sbjct: 417 GV 418
>gi|427798839|gb|JAA64871.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1220
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNI------LVKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS +ALQS+ + Q + I L++ H ++ F W+PSH GI+GNE +D+
Sbjct: 998 DSKAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQIT--FQWLPSHCGIIGNERADQ 1055
Query: 65 LAKEALSSNS 74
A+ A + +S
Sbjct: 1056 AARSAHTESS 1065
>gi|49574292|gb|AAT66817.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|427781951|gb|JAA56427.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 11 DSLSALQSIQNEF---SSNPIAQEIRNI---LVKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS +ALQS+ + S + EIR + +++ H ++ F W+PSH GI GN+++D
Sbjct: 230 DSKAALQSLPSALRHGSHEQLVAEIRQVHHDIIEKGH--TVIFQWMPSHCGIQGNDQADA 287
Query: 65 LAKEALSSNSPSVNTIPIN 83
A+ A N S IP++
Sbjct: 288 AARSA--HNGVSSVAIPLS 304
>gi|29367071|gb|AAO22466.1| pol protein [Simian immunodeficiency virus]
Length = 1012
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQN--EFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS A+ I + E S NPI +I ++ + +++ WVP+H GI GNEE D+
Sbjct: 663 NIVTDSQYAMGIISSSPEISDNPIVNQIIEQMISKE---AVYLNWVPAHKGIGGNEEEDK 719
Query: 65 LAKEAL 70
L +
Sbjct: 720 LVSRGI 725
>gi|37221378|gb|AAQ89818.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGIGGNEQVDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|242825397|ref|XP_002488432.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712250|gb|EED11676.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 733
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPI--NYFKRFLKSKILSTW----NTEW 101
WVP H G+VGNE++D+ AK A S +P + + + L++ L+ W +W
Sbjct: 591 WVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLADGRVYKMLEAGTLTQWREKPQKDW 650
Query: 102 VNLADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQET 148
+ R +++ P + ES E+ P+ + L+ + E
Sbjct: 651 LVGRRALYRALEKAGVPLPTAAEESPEARLFAEPRATQGLLQFVAEA 697
>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 331
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D+LA
Sbjct: 83 DNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAM 142
Query: 68 EA 69
EA
Sbjct: 143 EA 144
>gi|255984308|gb|ACU46226.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLXWVPAHKGIGGNEQVDKLVSX 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|37221380|gb|AAQ89819.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGIGGNEQVDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|417926074|ref|ZP_12569485.1| ribonuclease HI [Finegoldia magna SY403409CC001050417]
gi|341590295|gb|EGS33539.1| ribonuclease HI [Finegoldia magna SY403409CC001050417]
Length = 494
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKR 87
I+QE + ++++ F V +H GIV NE++D LAK+AL S YF
Sbjct: 176 ISQEYSKFFDEKSKLINIEFEHVKAHSGIVYNEKADELAKKALLSQGYKTYNDGSIYFIG 235
Query: 88 FLKSKILSTWNTEWVNLADNKLRQIKEE 115
F K +W+N+ ++ +I EE
Sbjct: 236 FQKQ--------DWLNMVESLNNEINEE 255
>gi|407915369|gb|EKG09000.1| hypothetical protein MPH_14030 [Macrophomina phaseolina MS6]
Length = 606
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAK------EALSSNSP-SVNTIPINYFKRFLKSKILS 95
+S+ F W+P+H G+ GNEE+DRLAK AL + + T + K+ + ++
Sbjct: 402 VSVDFHWIPAHQGVPGNEEADRLAKVVAREGRALEHRTQLNTRTSLVAALKQAINQAVMD 461
Query: 96 TWNTEW 101
W W
Sbjct: 462 EWKQTW 467
>gi|125661206|gb|ABN49551.1| pol protein, partial [Human immunodeficiency virus 1]
gi|125661216|gb|ABN49560.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1009
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ +E S + Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 660 SQYALGIIQAQPDESESELVNQIIEQLIKKDK----VYLTWVPAHKGIGGNEQVDKLVST 715
Query: 69 AL 70
+
Sbjct: 716 GI 717
>gi|37221382|gb|AAQ89820.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGIGGNEQVDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|306477523|gb|ADM89136.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ N+ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPNQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|339507370|gb|AEJ81097.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S + Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAIPDKSESELVNQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|358334054|dbj|GAA52490.1| dUTP pyrophosphatase [Clonorchis sinensis]
Length = 269
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 247 ARQKCQREVRRI--REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNI-IEDK 303
AR+ +R+V+ RE WW +K +++E + L+R + A+GP P+ I+D+
Sbjct: 189 ARRTIRRQVKVCADREAWWTRKAEKMEEAQKARNARKLFR-LIYAIGPQEPPVKENIKDQ 247
Query: 304 NGNKISNKEERLERWREHFQHVF 326
NG I + E R+ E+F+ F
Sbjct: 248 NGTTILS-ENRIHHQAEYFEKQF 269
>gi|427779469|gb|JAA55186.1| Putative tick transposon [Rhipicephalus pulchellus]
gi|427782053|gb|JAA56478.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 34/137 (24%)
Query: 25 SNPIAQEIRNILVKNKH------ILSLH-----------FTWVPSHVGIVGNEESDRLAK 67
S P Q +R++L + H I+ LH F W+P H GI GN +D A+
Sbjct: 231 SKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAAR 290
Query: 68 EALSSNSPSVNTIPI--------NYFKRFLKSKILSTWNTEWVNLADNKLRQIKE--EKR 117
+ + T+PI + + +S L+ WNT ++ +L QI E R
Sbjct: 291 TSHEQET----TVPIPLSRTDAASQLRHLARSLCLAEWNTP--SIRHTRLHQINPTLELR 344
Query: 118 PWNPSLHESRESNSARL 134
P LH S RL
Sbjct: 345 P-PAGLHRREASLLCRL 360
>gi|226348730|gb|ACO50684.1| pol protein [Human immunodeficiency virus 1]
Length = 725
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 LQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
L S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+
Sbjct: 428 LVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDK 483
Query: 65 LAKEAL 70
L +
Sbjct: 484 LVSAGI 489
>gi|302594740|gb|ADL59558.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 73 SDSPIVQQIIEELTKKEKV---YLTWVPAHKGIGGNEKIDKLV 112
>gi|306478177|gb|ADM89463.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q I ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQGIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|345494381|ref|XP_001599309.2| PREDICTED: hypothetical protein LOC100114206 [Nasonia vitripennis]
Length = 465
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 243 EYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIED 302
EY R++ R + E+ I ++ + +N+ +YRG+ + R +++D
Sbjct: 201 EYSNVRKQAGAINRNKKREYQKNLIRRIETNSKENNPREMYRGINAIRKCFRSRAQLMKD 260
Query: 303 KNGNKISNKEERLERWREHFQHVFN 327
+NG+ + N E L W+ +F + N
Sbjct: 261 ENGDLVRNDNELLSLWKNYFDKLLN 285
>gi|256252557|dbj|BAH97668.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L +
Sbjct: 658 SAQPTQSDSPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLVSQ 705
>gi|13095069|gb|AAK12125.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K +H WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VHLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|256252547|dbj|BAH97659.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L +
Sbjct: 658 SAQPTQSDSPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLVSQ 705
>gi|170778879|gb|ACB36839.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q++ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAVPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|13095071|gb|AAK12126.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K +H WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VHLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|444920566|ref|ZP_21240407.1| Hypothetical protein F387_01154 [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508385|gb|ELV08556.1| Hypothetical protein F387_01154 [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 227
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 36 LVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72
L K K IL + F WV H GI NE++D+LA +A+ S
Sbjct: 191 LAKYKEILDIEFVWVKGHAGIEYNEKADQLAYQAMLS 227
>gi|306477493|gb|ADM89121.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|312382181|gb|EFR27725.1| hypothetical protein AND_05226 [Anopheles darlingi]
Length = 962
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 242 REYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIE 301
R Y E +++ +R ++ W++ E ++ A D LY ++ G I+
Sbjct: 371 RRYTELKEQVDLAFQRDKQMWFDALAAEGEKAATDGDMKQLYEIIRRLKGDELDSNKPIQ 430
Query: 302 DKNGNKISNKEERLERWREHFQHVF-----NQQTT--VNLEGIEIDPITDNLPNDERPTE 354
K+G ++N ++LERW E+F + NQ T L +++ I++ N E PT
Sbjct: 431 SKHGQLLTNSSDQLERWFEYFGQLLTPPTDNQSETQRQQLSPLQVTRISE--VNSEEPTL 488
Query: 355 NEI 357
E+
Sbjct: 489 QEL 491
>gi|306477489|gb|ADM89119.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477485|gb|ADM89117.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRGESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477491|gb|ADM89120.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|37935891|gb|AAO47138.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+
Sbjct: 645 NIVTDSQYALGIISSQPTQSESPIVQQIIEELTKKEKV---YLTWVPAHKGIGGNEKIDK 701
Query: 65 LA 66
L
Sbjct: 702 LV 703
>gi|42592274|emb|CAF28998.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 565
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 480 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 535
Query: 69 ALS 71
+S
Sbjct: 536 GIS 538
>gi|306478257|gb|ADM89503.1| pol protein [Human immunodeficiency virus 1]
Length = 639
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 290 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 345
Query: 69 AL 70
+
Sbjct: 346 GI 347
>gi|306477487|gb|ADM89118.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477483|gb|ADM89116.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477479|gb|ADM89114.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TW+P+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDRSESEIVSQIIEQLIKKEK----VYLTWIPAHKGIGGNEQVDRLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|402534213|dbj|BAM37414.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I N++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVXQIIENLIKKDK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|331243639|ref|XP_003334462.1| hypothetical protein PGTG_15891 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 207
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTI 80
I +EI L + L + F W P H ++GNE +D LAKEAL+ + +
Sbjct: 119 IFKEIDKTLSELPCGLKMSFVWCPGHRDVLGNELADELAKEALTDKPTGIGAL 171
>gi|291522516|emb|CBK80809.1| Predicted double-stranded RNA/RNA-DNA hybrid binding protein
[Coprococcus catus GD/7]
Length = 352
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKN--KHILSLHFTWVPSHVGIVGNEESDRLAKE 68
D L + E+ N + + + ++K+ KH +++ F V +H GI GNEE+D+LAK+
Sbjct: 147 DYLGIEKWATGEWERNKVGTKYYHEIMKDAMKH-MTIVFKKVKAHTGIDGNEEADKLAKQ 205
Query: 69 ALSSNSPSVNTIPI 82
A+ S+S PI
Sbjct: 206 AVLSDSSDSEERPI 219
>gi|259122692|gb|ACV92656.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++VK+K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVNQIIEKLVVKDK----VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|358341808|dbj|GAA49395.1| hypothetical protein CLF_103004 [Clonorchis sinensis]
Length = 521
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 293 IRKPL--NIIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDP 341
I +PL I D+ G ISNKEERL+RW E+F+ QQ + G ++P
Sbjct: 77 IEEPLVSETIRDRKGVTISNKEERLDRWAEYFE----QQLSWTPAGTHLEP 123
>gi|60102723|gb|AAX14029.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADN 107
+WVP H GI GNE +DRLAK+ + + + P Y +R K ++ + + A
Sbjct: 962 SWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSP-AYLRREAKQQLHTATQAAYTRSAPQ 1020
Query: 108 KLRQIKEEKRPWNPSLHESRESNSARLPQVSLAELKVIQETLGDL 152
+ + RP +S + +LP+ L L + GD
Sbjct: 1021 AYQDLG--IRPHT----KSSRAQEHKLPRWVLGRLIAARTGHGDF 1059
>gi|284192167|gb|ADB82803.1| pol protein [Simian immunodeficiency virus]
Length = 743
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S NPI +EI +++ + ++ WVP+H GI GNE+ D+L + +
Sbjct: 524 SDNPIVREIIELMIGKE---GVYLGWVPAHKGIGGNEQVDKLVSQGI 567
>gi|242810717|ref|XP_002485639.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716264|gb|EED15686.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 163
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S P+ KR+ K++ LS ++W
Sbjct: 101 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPYKSSYASLKRYAKTQSLSAAQSQWQK 160
Query: 104 LA 105
+A
Sbjct: 161 VA 162
>gi|259122702|gb|ACV92665.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++VK+K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVNQIIEKLVVKDK----VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|67541861|ref|XP_664698.1| hypothetical protein AN7094.2 [Aspergillus nidulans FGSC A4]
gi|40742109|gb|EAA61299.1| hypothetical protein AN7094.2 [Aspergillus nidulans FGSC A4]
gi|259483586|tpe|CBF79097.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 334
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNL 104
L W+P H GI GN+ +D+LAK S SP + P Y ++ K + + T + N
Sbjct: 147 LQVCWIPGHSGIAGNKLADKLAKLGSSIYSPDIPPSP-AYLQQEAKQWLCTETYTAYANK 205
Query: 105 ADNKLRQI-----------KEEKRPW 119
A + + +E K PW
Sbjct: 206 APETYKALNIRPHTKESRSREHKLPW 231
>gi|388891220|gb|AFK80514.1| pol protein, partial [Simian immunodeficiency virus]
Length = 998
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ + LQ + ++ S +PI +EI + ++ KN +++ WVP+H GI GNEE D+L
Sbjct: 649 SQYVMGVLQGMPDQ-SDSPIVEEIIQKLMQKN----AVYLAWVPAHKGIGGNEEVDKLV 702
>gi|238734074|gb|ACR55322.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I +++K K ++ WVP+H GI GNE+ D+L
Sbjct: 661 SQYALGIIQAQPDKSESELVSQIIEQLIIKEK----VYLAWVPAHKGIGGNEQVDKLVSS 716
Query: 69 AL 70
+
Sbjct: 717 GI 718
>gi|427779423|gb|JAA55163.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 435
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 18/101 (17%)
Query: 11 DSLSALQSIQNEFSSN-------PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + I +E ++ K I F W+PSH GI+GNE ++
Sbjct: 235 DSKAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQIT---FQWLPSHCGIIGNERAN 291
Query: 64 RLAKEALSSNSPSVNTIPINYFKRFLKSKIL------STWN 98
+ A+ A + +S ++ IP++ K ++L S WN
Sbjct: 292 QAARSAHTESSQTL--IPLSRTDAAWKIRVLARQCTVSQWN 330
>gi|353246588|emb|CCA76851.1| hypothetical protein PIIN_10836 [Piriformospora indica DSM 11827]
Length = 431
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP 81
TWVP H GI GN+ +D AK+A++ S + T+P
Sbjct: 231 LTWVPGHEGIEGNKAADEEAKKAITDGSSTAATLP 265
>gi|255983922|gb|ACU46033.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
E +
Sbjct: 652 SEGI 655
>gi|37935888|gb|AAP42147.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 5 LQNSSK------DSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGI 56
LQ+S K DS AL I Q S +PI Q+I + K + + + TWVP+H GI
Sbjct: 637 LQDSKKEVNIVTDSQYALGIISSQPTQSDSPIVQQIIEEMTKKERV---YLTWVPAHKGI 693
Query: 57 VGNEESDRLA 66
GNE+ D+L
Sbjct: 694 GGNEKIDKLV 703
>gi|83584381|gb|ABC24966.1| reverse transcriptase [Monascus pilosus]
Length = 1183
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKI 93
+WVP H GI GNE +DRLAK+ + + + P Y +R K ++
Sbjct: 998 SWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSP-AYLRREAKQQL 1042
>gi|407915859|gb|EKG09366.1| Reverse transcriptase, partial [Macrophomina phaseolina MS6]
Length = 1113
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEA 69
S+ F W+P+H G+ GNEE+D+LAK A
Sbjct: 1058 SVGFHWIPAHQGVPGNEEADKLAKAA 1083
>gi|2232039|gb|AAB82087.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 507 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 552
>gi|83584378|gb|ABC24964.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKI 93
+WVP H GI GNE +DRLAK+ + + + P Y +R K ++
Sbjct: 996 SWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSP-AYLRREAKQQL 1040
>gi|289186936|gb|ADC92048.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|3776301|gb|AAC64709.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 507 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 552
>gi|306478175|gb|ADM89462.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q I + S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQGIPDRSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|49574274|gb|AAT66808.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----IYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|4539034|emb|CAB39916.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 1084 SQYALGIIQAQPDKSESDLVNQIIEQLIQKDK----VYLTWVPAHKGIGGNEQVDKLVSS 1139
Query: 69 AL 70
+
Sbjct: 1140 GI 1141
>gi|49574288|gb|AAT66815.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLMKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|49574286|gb|AAT66814.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLMKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|83584384|gb|ABC24968.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKI 93
+WVP H GI GNE +DRLAK+ + + + P Y +R K ++
Sbjct: 996 SWVPGHTGIAGNELADRLAKQGAAMDGSHIPPSP-AYLRREAKQQL 1040
>gi|242811493|ref|XP_002485760.1| hypothetical protein TSTA_097780 [Talaromyces stipitatus ATCC
10500]
gi|218714099|gb|EED13522.1| hypothetical protein TSTA_097780 [Talaromyces stipitatus ATCC
10500]
Length = 174
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+ WVP H I NE +D AKE +S P+ + KR K++ LS ++W
Sbjct: 109 SIQIRWVPGHAKIPENEAADLAAKEGAASTPPAPHKSLYASLKRHAKTQSLSAAQSQWEK 168
Query: 104 LA 105
+A
Sbjct: 169 VA 170
>gi|288187838|gb|ADC42406.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q++ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQALPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|49574290|gb|AAT66816.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQVIERLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|229661922|gb|ACQ84376.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I +++K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEIVSQIIEQLIIKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GV 711
>gi|242787335|ref|XP_002480986.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218721133|gb|EED20552.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 747
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
S+ WVP H I NE +D AKE +S P+ KR K++ LS ++W
Sbjct: 674 SIQIRWVPGHAKIPENEAADLAAKEGAASTPPAPQKSSYASLKRHAKTQSLSAAQSQW 731
>gi|339507653|gb|AEJ81238.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|37677775|gb|AAQ97453.1| Pol protein [Human immunodeficiency virus 1]
gi|37681532|gb|AAQ97642.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q++ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQALPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|321461849|gb|EFX72877.1| hypothetical protein DAPPUDRAFT_325814 [Daphnia pulex]
Length = 308
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 NEFSSNPIAQEIRNILVKNKHILS-LHFTWVPSHVGIVGNEESDRLA 66
N S N IR I+ K + TW+PSH GI GNE +DRLA
Sbjct: 216 NSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGNERADRLA 262
>gi|3776303|gb|AAC64710.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 507 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 552
>gi|358335451|dbj|GAA53970.1| hypothetical protein CLF_111774 [Clonorchis sinensis]
Length = 538
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 208 GVSGILSEIMDLVQDVVTSSEAGEDGLELPVARKREYQEARQKCQREVRRIREEWWNKKI 267
SG+L E QD + G E + R+ + + Q E E WW +
Sbjct: 306 SFSGVLIEGTPDYQDFTEIARNIPAGPEHYLTRRNIRRHVKVSVQAEC----EVWWTQIA 361
Query: 268 NELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNKISNKEERLERWREHFQHVFN 327
++E L R + P+ + I+D+ G +SNKEE ++RW E+F+
Sbjct: 362 KGMEE-------AQLIRATRPPKPPVSE---TIKDRKGVTVSNKEEHIDRWAEYFE---- 407
Query: 328 QQTTVNLEGIEIDP 341
Q+ + G ++P
Sbjct: 408 QKLAWSTAGTHLEP 421
>gi|37221450|gb|AAQ89854.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|339507320|gb|AEJ81072.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 593 SDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGV 652
>gi|321461852|gb|EFX72880.1| hypothetical protein DAPPUDRAFT_325810 [Daphnia pulex]
Length = 268
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 NEFSSNPIAQEIRNILVKNKHILS-LHFTWVPSHVGIVGNEESDRLA 66
N S N IR I+ K + TW+PSH GI GNE +DRLA
Sbjct: 173 NSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGNERTDRLA 219
>gi|168208527|gb|ACA21828.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I +++K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESDLVNQIIEQLIMKDK----VYLSWVPAHKGIGGNEQVDKLVSS 707
Query: 69 AL 70
+
Sbjct: 708 GI 709
>gi|339507455|gb|AEJ81139.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|306477769|gb|ADM89259.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|49574402|gb|AAT66869.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I +L K K ++ WVP+H GI GNE+ D+L +
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEELLKKEK----VYLAWVPAHKGIGGNEQVDKLVRT 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|312601913|gb|ADQ92513.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|37935841|gb|AAO47094.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 658 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEQIDKLV 703
>gi|319444194|gb|ADV58205.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|312601915|gb|ADQ92514.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1428
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 1079 SQYALGIIQAQPDKSESDLVNQIIEQLIQKNK----VYLSWVPAHKGIGGNEQVDKLVSN 1134
Query: 69 AL 70
+
Sbjct: 1135 GI 1136
>gi|113171671|gb|ABI30941.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|358334914|dbj|GAA53338.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 266
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 248 RQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGN 306
R + + VR RE WW +K E++E + L++ ++ A P + P++ +I+++N
Sbjct: 98 RHQLKVSVRADREVWWTQKAKEMKEAQKAGNARGLFQLIR-ASSPRKPPVSKLIKNRNAL 156
Query: 307 KISNKEERLERWRE 320
I NK ER++RW E
Sbjct: 157 IILNK-ERIDRWAE 169
>gi|254691745|gb|ACT79336.1| pol protein [Simian immunodeficiency virus]
Length = 293
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 6/58 (10%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEI-RNILVKNKHILSLHFTWVPSHVGIVGNEESDRL 65
S+ ++ LQ + ++ S +P+ +EI + ++ KN +++ WVP+H GI GNEE D+L
Sbjct: 52 SQYAMGVLQGMPDQ-SDSPLVEEIIQKLMQKN----AVYLAWVPAHKGIGGNEEVDKL 104
>gi|392586678|gb|EIW76014.1| hypothetical protein CONPUDRAFT_158790 [Coniophora puteana
RWD-64-598 SS2]
Length = 198
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 12/158 (7%)
Query: 1 MATMLQNSSK--DSLSALQSIQNEFSSNPIAQE-IRNILVKNKHILSLHFTWVPSHVGIV 57
+A L+N+ K D+ A+ I F+ N A + IR + N H ++L W P H G
Sbjct: 4 IACALENTIKIADTDEAINHIY-VFTDNIAAGDAIRFLESNNTHRITLE--WTPGHKGTR 60
Query: 58 GNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW---VNLADNKLRQIKE 114
GNE +D LAKE + P +T K L+ W W +N D++
Sbjct: 61 GNERADELAKEG-TELDPETDTPTFAAMHCIAKENTLNAWKGIWHAKLNREDSRFHAANR 119
Query: 115 EKRPWNPSLH--ESRESNSARLPQVSLAELKVIQETLG 150
P H E+ ++ Q + + ET+G
Sbjct: 120 FLPALKPRHHFIENDRKIYGQMLQARMGYCFAVPETVG 157
>gi|300431883|gb|ADK12785.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|192335060|gb|ACF04047.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAKPDKSESELVSQIIEELIKKEK----IYLTWVPAHKGIGGNEQVDKLVSA 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|319444174|gb|ADV58187.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|255984342|gb|ACU46243.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|113171663|gb|ABI30934.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|452005484|gb|EMD97940.1| hypothetical protein COCHEDRAFT_1209701 [Cochliobolus
heterostrophus C5]
Length = 231
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
WVP H G++GNE +D LAKEA + PS + + + ++I EW++
Sbjct: 44 WVPGHQGVIGNERADALAKEATKLD-PSSSRTSLA----VIGTRIKQLGEREWLSY---- 94
Query: 109 LRQIKEEKRPWNPSLHESR----------ESNSARLPQVSLAELKVIQETLGD-LERQGD 157
L Q + + NP+ + +R ++R + +LK+ L D L ++G
Sbjct: 95 LGQYRRKAITLNPTTYAARYKWKTRKQIATPPTSREASSAFYQLKLGHCYLRDFLFKRGK 154
Query: 158 LDLDLC 163
+D +C
Sbjct: 155 VDSKVC 160
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1121
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 11 DSLSALQSIQN-EFSSNPIAQEIRNILV-KNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
DSLS ++++ + + NP+ ++ L ++ + WVP H GI GNE +D A
Sbjct: 1020 DSLSVVRALHTGKPNKNPVLCDVEKQLTNAYRNTSEITVCWVPGHAGIDGNERADACAAV 1079
Query: 69 ALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNKL 109
A ++ VN++P K + + W EW +NKL
Sbjct: 1080 AAQKSNLDVNSVPYQDLKALVHRNLRERWQKEWDLETNNKL 1120
>gi|321456607|gb|EFX67710.1| hypothetical protein DAPPUDRAFT_261174 [Daphnia pulex]
Length = 268
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 21 NEFSSNPIAQEIRNILVKNKHILS-LHFTWVPSHVGIVGNEESDRLA 66
N S N IR I+ K + TW+PSH GI GNE +DRLA
Sbjct: 173 NSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGNERTDRLA 219
>gi|49574301|gb|AAT66821.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|49574268|gb|AAT66805.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256011016|gb|ACU55364.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 655 SDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 710
Query: 67 KEAL 70
+
Sbjct: 711 SAGI 714
>gi|49574284|gb|AAT66813.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|392872151|gb|AFM85345.1| polymerase polyprotein, partial [Simian immunodeficiency virus]
Length = 297
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S +P+ Q+I ++++ ++ WVP+H GI GNEE D+L + +
Sbjct: 67 SESPLVQQIIELMIQKS---GVYLGWVPAHKGIGGNEEVDKLVSQGI 110
>gi|328710861|ref|XP_003244383.1| PREDICTED: hypothetical protein LOC100570071 [Acyrthosiphon pisum]
Length = 90
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINY--FKRFLKSKILSTWNTEWVNLAD 106
W+P H I GNE +D+ AK+A +N+P + + Y KR + + + W +WV
Sbjct: 2 WIPGHCNIEGNELADKAAKQAHLANNPLTSPV-FTYQDVKRIIAIEAQNQWENKWVAQTT 60
Query: 107 NKLR 110
N R
Sbjct: 61 NYTR 64
>gi|4205019|gb|AAD10896.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 561 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 616
Query: 67 KEAL 70
+
Sbjct: 617 SAGI 620
>gi|3163931|emb|CAA06947.1| pol polyprotein precursor [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|49574270|gb|AAT66806.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|10436122|gb|AAG16802.1| pol protein [Human immunodeficiency virus 1]
gi|10436132|gb|AAG16811.1| pol protein [Human immunodeficiency virus 1]
gi|300431893|gb|ADK12794.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|319444184|gb|ADV58196.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|256011354|gb|ACU55533.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 LQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
J S+ +L +Q+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+
Sbjct: 650 JVTDSQYALGIIQAQPDKSESELVSQIIEQLIXKER----VYLTWVPAHKGIGGNEQVDK 705
Query: 65 LAKEAL 70
L +
Sbjct: 706 LVSTGI 711
>gi|300431903|gb|ADK12803.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|300431863|gb|ADK12767.1| pol protein [Human immunodeficiency virus 1]
gi|300431873|gb|ADK12776.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|222428479|gb|ACM50113.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|49574303|gb|AAT66822.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|304347449|gb|ADM25287.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|256011614|gb|ACU55663.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIQKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|49574299|gb|AAT66820.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|353243286|emb|CCA74846.1| hypothetical protein PIIN_08815 [Piriformospora indica DSM 11827]
Length = 171
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 3 TMLQNSSKDSLS-----ALQSIQNEFSSNPIAQEIRNIL------VKNKHILSLHFTWVP 51
TM N +K ++S A+QSI + N + NIL + + L + FTWVP
Sbjct: 55 TMQGNCTKVNISLNNQVAIQSIAHA-RPNTGQHVMENILSEIEDELSDHRRLQIEFTWVP 113
Query: 52 SHVGIVGNEESDRLAKEAL--SSNSPS 76
H GI GN+ +D+ AK+A+ S++ PS
Sbjct: 114 GHKGIQGNKVADKEAKKAITESASRPS 140
>gi|339507168|gb|AEJ80996.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 593 SDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1139
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 11 DSLSALQSIQN--EFSSNPIAQEIRNILVKNK-HILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL+++QN S I + I + L + + L + F W+P+H GI GNE +D+LA
Sbjct: 891 DNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAM 950
Query: 68 EA 69
EA
Sbjct: 951 EA 952
>gi|328834376|gb|AEB52792.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 707
Query: 69 AL 70
+
Sbjct: 708 GI 709
>gi|312602014|gb|ADQ92562.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256011438|gb|ACU55575.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|255984028|gb|ACU46086.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SNGI 655
>gi|49574266|gb|AAT66804.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|298204343|gb|ADI61820.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 1013
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 250 KCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLNIIEDKNGNKIS 309
+ Q RR R ++ EL+ ANK++T NL++ +KS + IE+ G ++
Sbjct: 405 RIQEACRRDRNQYLQNLCIELEIHANKHETRNLHQKIKSLTKTLSSKTWAIENSQGETVT 464
Query: 310 NKEERLERWREHFQHVF 326
+ E+ E W+++ Q +F
Sbjct: 465 DLEDISETWKQYCQSLF 481
>gi|255984512|gb|ACU46328.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
Length = 602
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNS-----PSVNTIPI 82
IA++++ + K + + W+P+HVGI GNE +D AKEA + P P
Sbjct: 393 IARQVQRLQDKGRPVT---VRWIPAHVGIPGNEAADIAAKEATGWRADGRRQPPAEAPPK 449
Query: 83 NY-----FKRFLKSKILSTWNTEW 101
+ +R+ K++ TW W
Sbjct: 450 LFPLKSTLRRWCKTQAERTWADSW 473
>gi|256011210|gb|ACU55461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVTQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|255984084|gb|ACU46114.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SXGI 655
>gi|256011154|gb|ACU55433.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|37221481|gb|AAQ89869.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D L
Sbjct: 596 TDSQYALGILQAKPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDXLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|325634806|gb|ADZ32759.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEELIRKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325634790|gb|ADZ32745.1| pol protein [Human immunodeficiency virus 1]
gi|325634822|gb|ADZ32773.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEELIRKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|255984186|gb|ACU46165.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|325634798|gb|ADZ32752.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEELIRKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|295314174|gb|ADF97424.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 658 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 713
Query: 69 AL 70
+
Sbjct: 714 GI 715
>gi|289469844|gb|ADC96577.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GV 556
>gi|255983968|gb|ACU46056.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SXGI 655
>gi|288188476|gb|ADC42712.1| pol protein [Human immunodeficiency virus 1]
Length = 664
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIRKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
K +
Sbjct: 652 KAGI 655
>gi|257152889|emb|CAT00588.1| gag/pol precursor [HIV-1 M_02CD.LBTB032]
Length = 1431
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K + +H TWVP+H GI GNE+ D+L
Sbjct: 1082 SQYALGIIQAQPDKSESELVNQIIEQLIKKER----VHLTWVPAHKGIGGNEQVDKLVSS 1137
Query: 69 AL 70
+
Sbjct: 1138 GI 1139
>gi|226348696|gb|ACO50667.1| pol protein [Human immunodeficiency virus 1]
Length = 751
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 432 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 487
Query: 69 AL 70
+
Sbjct: 488 GI 489
>gi|13095307|gb|AAK12219.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 501 SQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 556
Query: 69 AL 70
+
Sbjct: 557 GI 558
>gi|425783431|gb|EKV21281.1| hypothetical protein PDIP_08070 [Penicillium digitatum Pd1]
Length = 268
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 11 DSLSALQSIQN-EFSSNPIAQE--IRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67
D+ +AL++IQN + S + E +R + +K + + W+P+H GI GNE D LAK
Sbjct: 143 DNQAALKAIQNPKMPSGQVYLEGSLRLLDWCSKSKIQVELRWIPAHEGIPGNEHVDMLAK 202
Query: 68 EAL----SSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
A +SN + +T +++K + + W W
Sbjct: 203 SAATTTDTSNYHNRSTRLAAAASKWIKHESMIAWEKSW 240
>gi|49574272|gb|AAT66807.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSP 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|1086126|pir||S46347 pol polyprotein - simian immunodeficiency virus SIVagm (isolate
SAB-1)
gi|466231|gb|AAA21505.1| pol protein [Simian immunodeficiency virus - agm.sab-1]
Length = 1039
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNEF--SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS A+ I E S N I Q+I L+K + +++ WVP+H G+ GNEE D+
Sbjct: 681 NIITDSQYAMGIIAGEPTESDNNIVQQIIEELIKKE---AVYIAWVPAHKGVGGNEEIDK 737
Query: 65 LAKEAL 70
L + +
Sbjct: 738 LVSQGI 743
>gi|325634814|gb|ADZ32766.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEELIRKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256011580|gb|ACU55646.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S + Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVNQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|18073402|emb|CAC87993.1| POL protein [Human immunodeficiency virus 1]
Length = 1004
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQIDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|391379672|gb|AFM44305.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S + Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVNQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|157273983|gb|ABV28257.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L E
Sbjct: 656 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEKVDKLVSE 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|38491658|gb|AAR22051.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDKSESESVSQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|407916627|gb|EKG09972.1| hypothetical protein MPH_12934 [Macrophomina phaseolina MS6]
Length = 209
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 13 LSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
+S +Q I ++ +Q R + + + + W P H+GI GNEE+D+LAK A+
Sbjct: 1 MSVIQGIDGHTPASSQSQFTRLKSTRQELRIPVVTRWCPGHMGITGNEEADQLAKAAIG 59
>gi|321466291|gb|EFX77287.1| hypothetical protein DAPPUDRAFT_247862 [Daphnia pulex]
Length = 211
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 11 DSLSALQSI-QNEFSSNPIAQEIRNILVKNKHILSLH-FTWVPSHVGIVGNEESDRLAKE 68
DS +A+++I N + N R ++ K +L W+PSH GI GNE +DRLA
Sbjct: 29 DSSTAIKTIASNTHTDNDTVATTRELIASLKSSGTLTTLAWIPSHTGIEGNETADRLASN 88
Query: 69 ALSSNSPSVNTIPIN 83
++ S + TI ++
Sbjct: 89 ECANPSGNQATIQLS 103
>gi|37935851|gb|AAO47103.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 660 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 705
>gi|37935861|gb|AAO47112.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 658 SSQPTQSDSPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|289187254|gb|ADC92206.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37935911|gb|AAO47155.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 658 SSQPTQSESPIVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|37221458|gb|AAQ89858.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|358338534|dbj|GAA56941.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 134
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 259 REEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLE 316
RE WW ++ E++E + ++ ++ GP + P++ I+D+NG ISN EERL+
Sbjct: 77 REVWWTQRAKEMEESQKAGNIQRFFQLIR-VTGPRKPPVSETIKDRNGVNISNIEERLD 134
>gi|222428459|gb|ACM50097.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 665 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 720
Query: 69 AL 70
+
Sbjct: 721 GI 722
>gi|451995536|gb|EMD88004.1| hypothetical protein COCHEDRAFT_1111840, partial [Cochliobolus
heterostrophus C5]
Length = 240
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVNLADNK 108
WVP H G++GNE +D LAKEA + S T + ++I EW++
Sbjct: 105 WVPGHQGVIGNERADALAKEATKLDPSSSRT-----SLAVIGTRIKQLGEREWLSY---- 155
Query: 109 LRQIKEEKRPWNPSLHESRES 129
L Q + NP+ + +R +
Sbjct: 156 LGQYGRKAITLNPTTYAARAT 176
>gi|154277070|ref|XP_001539380.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414453|gb|EDN09818.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 321
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSV 77
W P H+ I GNEE+DRLAK+A+SS + V
Sbjct: 193 WAPEHMKIEGNEEADRLAKQAVSSTAAPV 221
>gi|325635728|gb|ADZ33547.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ N+ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPNKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|452005481|gb|EMD97937.1| hypothetical protein COCHEDRAFT_1209697 [Cochliobolus
heterostrophus C5]
Length = 138
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSPSVNT 79
WVP H G++GNE +D LAKEA+ + S T
Sbjct: 62 WVPGHQGVIGNERADALAKEAIKLDPSSSRT 92
>gi|387119182|gb|AFJ52171.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1011
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ++ S + I +I LVK + I + +WVP+H GI GNE+ D+
Sbjct: 657 NIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEKI---YLSWVPAHKGIGGNEQIDK 713
Query: 65 LAKEAL 70
L +
Sbjct: 714 LVSAGI 719
>gi|376407907|gb|AFB39903.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1005
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K +H WVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VHLAWVPAHKGIGGNEKVDKLVST 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|37221456|gb|AAQ89857.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221454|gb|AAQ89856.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|393226542|gb|EJD34284.1| hypothetical protein AURDEDRAFT_37261, partial [Auricularia
delicata TFB-10046 SS5]
Length = 72
Score = 39.3 bits (90), Expect = 3.2, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 20/22 (90%)
Query: 48 TWVPSHVGIVGNEESDRLAKEA 69
+WVPSH+GI GNE +D+LAK+A
Sbjct: 50 SWVPSHIGIRGNERADQLAKQA 71
>gi|156144946|gb|ABU53017.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ++ S + I +I LVK + I + +WVP+H GI GNE+ D+
Sbjct: 657 NIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEKI---YLSWVPAHKGIGGNEQIDK 713
Query: 65 LAKEAL 70
L +
Sbjct: 714 LVSAGI 719
>gi|49574280|gb|AAT66811.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESQLVSQIIEQLIKKEK----VYLTWVPTHKGIGGNEQVDKLV 552
>gi|391379712|gb|AFM44341.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I +++K K ++ WVP+H GI GNE D+L
Sbjct: 653 SQYALGILQAQPDKSESELVSQIIEQLILKEK----VYLAWVPAHKGIGGNERVDKLVSA 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|353244253|emb|CCA75678.1| hypothetical protein PIIN_09668 [Piriformospora indica DSM 11827]
Length = 626
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 47 FTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP 81
TWVP H GI GN+ +D AK+A++ S + T+P
Sbjct: 577 LTWVPGHEGIEGNKAADEEAKKAITDGSSTAATLP 611
>gi|339507194|gb|AEJ81009.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQATPDKSESELVNQIIEQLIQKEK----VYLTWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|339507597|gb|AEJ81210.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|18073412|emb|CAC88002.1| POL protein [Human immunodeficiency virus 1]
Length = 1018
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I +++K K ++ +WVP+H GI GNE+ D+L
Sbjct: 669 SQYALGIIQAQPDKSESELVSQIIEQLIMKEK----VYLSWVPAHKGIGGNEQVDKLVSS 724
Query: 69 AL 70
+
Sbjct: 725 GV 726
>gi|302594720|gb|ADL59548.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S + Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 59 SQYALGIIQAIPDKSESEIVNQIIEQLINKEK----VYLSWVPAHKGIGGNEQVDKLVSS 114
Query: 69 AL 70
+
Sbjct: 115 GI 116
>gi|110815944|sp|Q79666.3|POL_HV1MV RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1446
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRL 65
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 1095 SSQPTQSDSPIVQQIIEELTKKERV---YLTWVPAHKGIGGNEKIDKL 1139
>gi|13095104|gb|AAK12137.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 499 SQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQADKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|395758866|gb|AFN70523.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|321457344|gb|EFX68432.1| hypothetical protein DAPPUDRAFT_114543 [Daphnia pulex]
Length = 154
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNSP 75
W+PSHVGI GNE++D LA SSN P
Sbjct: 18 WIPSHVGIDGNEKADILAATESSSNEP 44
>gi|313884834|ref|ZP_07818586.1| ribonuclease HI [Eremococcus coleocola ACS-139-V-Col8]
gi|312619525|gb|EFR30962.1| ribonuclease HI [Eremococcus coleocola ACS-139-V-Col8]
Length = 224
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71
+ PI+Q N L + + ++LHF V SH G+ NE DRLAK++L
Sbjct: 176 AKKPISQLYVNFLQERQGRINLHFCHVDSHTGVEYNEVVDRLAKKSLG 223
>gi|376407117|gb|AFB39194.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDRSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|306477593|gb|ADM89171.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|295883834|gb|ADG57067.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVNQIIEQLIAKEK----VYLTWVPAHKGIGGNEQVDKLVSA 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|322712945|gb|EFZ04518.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 721
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSK 92
S+H W+P H I GNE++D LAK + P + Y +R K +
Sbjct: 671 SIHVRWIPGHTDIPGNEQADSLAKAGCALPEPPDAKPTLAYIRRVAKKQ 719
>gi|307176190|gb|EFN65847.1| hypothetical protein EAG_02388 [Camponotus floridanus]
Length = 220
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWV 102
+ ++ W+PSH G +GNE +D LAK+ S + +P K N EW
Sbjct: 73 IKIYLIWIPSHKGFIGNEIADILAKQGASERADDSIHVPFQDLTSVFK-------NEEWN 125
Query: 103 NLADNKLRQIK 113
+ D L Q +
Sbjct: 126 DTQDRILTQAR 136
>gi|37221464|gb|AAQ89861.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+ +
Sbjct: 652 RAGI 655
>gi|441434040|gb|AGC31698.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|312602021|gb|ADQ92565.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+L
Sbjct: 598 SQYALGILQAQPDKSESELVSQIIEELIKKER----VYLTWVPAHKGIGGNEQVDKLVST 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|443720727|gb|ELU10363.1| hypothetical protein CAPTEDRAFT_200773, partial [Capitella teleta]
Length = 109
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 244 YQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIR-KPLNIIED 302
Y E ++ +R +EEW NK+ +EL+ + D ++ +K G R +P I+
Sbjct: 4 YAELDEEIKRMCNTAKEEWLNKECDELERL-HLIDAKRMHEKVKDLSGKKRSQPAECIQS 62
Query: 303 KNGNKISNKEERLERWREHFQHVFNQQ 329
K N I K++ ERW E+ Q ++N +
Sbjct: 63 KEENIIIEKDKIRERWTEYIQELYNSE 89
>gi|441442740|gb|AGC32288.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442743|gb|AGC32290.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 987
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|441434072|gb|AGC31719.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507379|gb|AEJ81101.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q++ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQALPDKSESELVSQIIEQLINKEK----VYLAWVPAHKGIGGNEQVDKLVSS 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|312601783|gb|ADQ92451.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 598 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|441434051|gb|AGC31705.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|358022907|gb|AEU03928.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHIL----SLHFTWVPSHVGIVGNEESDRLAKEAL 70
I+ F ++P EIR L+K L ++ +WVP+H GI GNE+ D+L +
Sbjct: 659 CIRESFRAHPDRSEIRVSLIKITEKLIEKDKVYLSWVPAHKGIGGNEQVDKLVSNGI 715
>gi|326370842|gb|ADZ56598.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|441442755|gb|AGC32298.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 987
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306477817|gb|ADM89283.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 499 SQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQADKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|156033315|ref|XP_001585494.1| hypothetical protein SS1G_13733 [Sclerotinia sclerotiorum 1980]
gi|154699136|gb|EDN98874.1| hypothetical protein SS1G_13733 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 177
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE-A 69
DS S + ++ + + P +Q + K L++ W P H+ I GNEE+DRLA A
Sbjct: 4 DSTSVIWGMRGD--APPTSQWAFHKCHKAIRQLNIRVKWSPGHMEIEGNEEADRLANAGA 61
Query: 70 LSSNSPSVNTIP-INYFKRFLKSKILSTWNTEWVNLADNKLRQIKEEKRPWNPSLHESRE 128
+ + + +P I+ + + K L W + + + + W+P+ + ++E
Sbjct: 62 VGPMDQAADKLPTISGVRTIFRKKCLRAETDWWKEV----IASLSSSYKKWSPN-YNTKE 116
Query: 129 SNSARLPQVSLAELKVIQETLGD 151
LP+ L L ++ GD
Sbjct: 117 PKELALPRGVLHRLLAMKTGHGD 139
>gi|441442737|gb|AGC32286.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442746|gb|AGC32292.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442749|gb|AGC32294.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442752|gb|AGC32296.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442758|gb|AGC32300.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442761|gb|AGC32302.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442764|gb|AGC32304.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442767|gb|AGC32306.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 987
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|441434048|gb|AGC31703.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434057|gb|AGC31709.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434063|gb|AGC31713.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434066|gb|AGC31715.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434069|gb|AGC31717.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434075|gb|AGC31721.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434078|gb|AGC31723.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434081|gb|AGC31725.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434084|gb|AGC31727.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441434087|gb|AGC31729.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|441434045|gb|AGC31701.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|83584387|gb|ABC24970.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKI 93
+WVP H GI GNE +DRLAK+ + + P Y +R K ++
Sbjct: 996 SWVPGHTGIAGNELADRLAKQGAAMEGSHIPPSP-AYLRREAKQQL 1040
>gi|333101907|gb|AEF14099.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGILQAQPDKSESELVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQIDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|395455486|gb|AFN62163.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ ++ +Q+ ++ S ++Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYAIGIIQAQPDKSESALVSQIIEKLIQKNK----VYLSWVPAHKGIGGNEQVDKLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|441434054|gb|AGC31707.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|363583946|gb|AEW27509.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ +E S + Q I ++ K K ++ +WVP+H GI GNE+ D+L +
Sbjct: 656 SQYALGIIQAQPDESESELVNQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSQ 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|256011432|gb|ACU55572.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+A + S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE
Sbjct: 646 LAVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNE 701
Query: 61 ESDRLAKEAL 70
+ D+L +
Sbjct: 702 QVDKLVSTGI 711
>gi|49574282|gb|AAT66812.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESQLVSQIIERLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
>gi|469241|gb|AAA44860.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1033
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 682 SSQPTQSDSPIVQQIIEELTKKERV---YLTWVPAHKGIGGNEKIDKLV 727
>gi|358256515|dbj|GAA49448.1| ATP-binding cassette transporter [Clonorchis sinensis]
Length = 319
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 265 KKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNGNKISNKEERLE 316
K++ E Q+ N + L R A GP + P++ I+D+NG ISNKEERL+
Sbjct: 271 KEMEETQKAGNARRLFQLIR----ATGPRKPPVSETIKDRNGTTISNKEERLD 319
>gi|441434060|gb|AGC31711.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 985
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|322702767|gb|EFY94393.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 553
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEWVN 103
S+H W+P H I GNE++D LAK + P + Y R K + + W
Sbjct: 435 SIHVRWIPGHTDIPGNEQADSLAKAGCALPEPPDAKPTLAYTLRTAKKQSKEAFQAWWQE 494
Query: 104 LADNKLRQIK 113
K +++K
Sbjct: 495 HMPEKYKELK 504
>gi|306477447|gb|ADM89098.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKGK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|229661960|gb|ACQ84410.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSDSELVSQIIEQLINKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|117940230|gb|ABK58245.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L +
Sbjct: 660 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSQ 715
Query: 69 AL 70
+
Sbjct: 716 GI 717
>gi|158931144|sp|P05895.2|POL_SIVVT RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1467
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S +P+ ++I ++++ + I + WVP+H GI GNEE D+L + +
Sbjct: 1129 SDSPLVEQIIALMIQKQQI---YLQWVPAHKGIGGNEEIDKLVSKGI 1172
>gi|60102699|gb|AAX14028.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 48 TWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIPINYFKRFLKSKI 93
+WVP H GI GNE +DRLAK+ + + P Y +R K ++
Sbjct: 962 SWVPGHTGIAGNELADRLAKQGAAMEGSHIPPSP-AYLRREAKQQL 1006
>gi|294952671|ref|XP_002787406.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902378|gb|EER19202.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 664
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
DS SAL SI+ + S+ + +EIR ++ K + FTWV +H G + NE D LAK A
Sbjct: 449 DSKSALMSIRGDRSTT-LLEEIRGLIRKTGAM----FTWVKAHNGALYNEWVDALAKSA 502
>gi|113706907|gb|ABI36566.1| pol protein [Human immunodeficiency virus 1]
Length = 768
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|326370832|gb|ADZ56589.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +QS ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQSQPDKSESEIVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507389|gb|AEJ81106.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 593 SDSQYAIGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SSGI 652
>gi|117940221|gb|ABK58237.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L +
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSQ 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|55275127|gb|AAV49352.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLINKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|77416890|sp|P05959.3|POL_HV1RH RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 1087 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVST 1142
Query: 69 AL 70
+
Sbjct: 1143 GI 1144
>gi|49574278|gb|AAT66810.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE D+L
Sbjct: 499 SQYALGIIQAQPDKSESQLVSQIIEQLIKKEK----VYLTWVPAHKGIGGNERVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|114842156|dbj|BAF32564.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1062
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S +P+ ++I ++++ + I + WVP+H GI GNEE D+L + +
Sbjct: 724 SDSPLVEQIIALMIQKQQI---YLQWVPAHKGIGGNEEIDKLVSKGI 767
>gi|22596575|gb|AAN03329.1|AF457090_2 pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLITKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|328569|gb|AAA45053.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVST 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|376405844|gb|AFB38051.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K +H WVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESGLVNQIIEQLIKKEK----VHLAWVPAHKGIGGNEQVDKLVSA 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|328701619|ref|XP_001944874.2| PREDICTED: hypothetical protein LOC100166471 [Acyrthosiphon pisum]
Length = 672
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSS-NSPSVNTIPINYFKRFLKSKILSTWNTE---WVNL 104
W+P+H I GNE++D AKEA ++ N P ++ ++ FK ++ ++S+ W
Sbjct: 2 WIPAHKNIPGNEKADVAAKEAATNINIPKID---LSSFKDTSRNALISSKKIHQRLWDQE 58
Query: 105 ADNKLRQIKEEKRPWNPSLHESRESNSARLPQVSLAEL-KVIQETLGDLERQGDLD 159
+NKL QIK P NP + S++ R SL +L + QET D LD
Sbjct: 59 LNNKLYQIKPFLSP-NP----NPPSSTRRQQITSLGKLIPMQQETFSDQFMSASLD 109
>gi|255984696|gb|ACU46420.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|158935175|emb|CAM90426.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ++ S + I +I LVK + I + +WVP+H GI GNE+ D+
Sbjct: 48 NIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEKI---YLSWVPAHKGIGGNEQIDK 104
Query: 65 LAKEAL 70
L +
Sbjct: 105 LVSAGI 110
>gi|55275137|gb|AAV49361.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLINKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|49574305|gb|AAT66823.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI G+E+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGDEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|112497882|gb|ABI20285.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----IYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|427784665|gb|JAA57784.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 11 DSLSALQSIQNEFSSN---PIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDR 64
DS SALQ++Q + EIR+ ++N H ++ F W+PSH GI GN+ +D
Sbjct: 230 DSRSALQTLQFALRHGLHEQLVYEIRHDYHQALENGHDVT--FQWLPSHCGIAGNDRADE 287
Query: 65 LAKEA----LSSNSPSVNTIPINYFKRFLKSKILSTWNTE 100
A+ A L P T + + L WNT+
Sbjct: 288 AARSAHEKDLQVPIPLSRTDAARQLQSLARRLTLLQWNTQ 327
>gi|380484386|emb|CCF40032.1| zinc knuckle [Colletotrichum higginsianum]
Length = 445
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 32 IRNILVKNKHI----LSLHFTWVPSHVGIVGNEESDRLAKEA 69
++ I VK + + L WVP+H GI GNE++D+ AKEA
Sbjct: 229 LQTIAVKTQKLQEQGLKTEIRWVPAHTGIQGNEDADKAAKEA 270
>gi|339507437|gb|AEJ81130.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|325637600|gb|ADZ35134.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ N+ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAHPNKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQIDKLVSA 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|288187846|gb|ADC42410.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|218347062|emb|CAQ60125.1| Pol protein [Simian immunodeficiency virus - olc]
Length = 994
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DSL A+ + + E S P+ QE+ L K + I + WVP+H G+ GN+E D+
Sbjct: 648 NIVTDSLYAMGIVLEKPEVSEEPLIQELIKELEKKERI---YIGWVPAHKGLGGNQEVDQ 704
Query: 65 LAKEALSS 72
L + + +
Sbjct: 705 LVSKGIRT 712
>gi|112497902|gb|ABI20303.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----IYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|367465315|gb|AEX15450.1| pol protein [Human immunodeficiency virus 1]
Length = 392
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 43 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 98
Query: 69 AL 70
+
Sbjct: 99 GI 100
>gi|289187333|gb|ADC92245.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVXQIIEQLIKKEK----VYLTWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37677875|gb|AAQ97543.1| Pol protein [Human immunodeficiency virus 1]
gi|37677885|gb|AAQ97552.1| Gag protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 651 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNEKVDKLVSA 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|256011524|gb|ACU55618.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----IYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|427781953|gb|JAA56428.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 11 DSLSALQSIQNEF---SSNPIAQEIR----NILVKNKHILSLHFTWVPSHVGIVGNEESD 63
DS +ALQS+ + S + EIR +I+ K ++ F W+PSH GI GN+++D
Sbjct: 230 DSKAALQSLPSALRHGSHEQLVAEIRQVHHDIIEKGHQVI---FQWMPSHCGIQGNDQAD 286
Query: 64 RLAKEA 69
A+ A
Sbjct: 287 AAARSA 292
>gi|187371935|gb|ACD02831.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 654 SQYALGILQAQPDKSESEIVNQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDRLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|117643952|gb|ABK51645.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 ATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEE 61
A + S+ +L +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+
Sbjct: 647 AVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIQKDK----IYLSWVPAHKGIGGNEQ 702
Query: 62 SDRLAKEAL 70
D+L +
Sbjct: 703 VDKLVSNGI 711
>gi|18699255|gb|AAL78496.1|AF414006_8 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQADKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|427798325|gb|JAA64614.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 339
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNIL---VKNKHILSLHFTWVPSHVGIVGNEESDRL 65
SK +L L S S + EIR +L + H + F W+PSH I GN+ +D
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGH--DVVFQWLPSHCCISGNDLADEA 288
Query: 66 AKEALSSNSPSVNTIPIN------YFKRFLKSKILSTWNTEWVNLADNKLRQI 112
A+EA S+ +IP++ Y + ++ L W T D +L +
Sbjct: 289 AREA--QGETSLVSIPLSRIDAARYLSKLAQNMTLQMWRTS--QFTDQRLYSL 337
>gi|27356950|gb|AAN34508.1| pol protein [Simian immunodeficiency virus]
Length = 656
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DSL A+ + + E S P+ QE+ L K + I + WVP+H G+ GN+E D+
Sbjct: 399 NIVTDSLYAMGIVLEKPEVSEEPLIQELIKELEKKERI---YIGWVPAHKGLGGNQEVDQ 455
Query: 65 LAKEALSS 72
L + + +
Sbjct: 456 LVSKGIRT 463
>gi|313661109|dbj|BAJ41134.1| Pol protein [Human immunodeficiency virus 1]
gi|313661119|dbj|BAJ41143.1| Pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GV 711
>gi|289469888|gb|ADC96599.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYSLGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|288187694|gb|ADC42338.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q + ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIVEQLIKKEK----VYLTWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|256252577|dbj|BAH97686.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L + S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 650 SQYTLGIISS-QPTQSESPIVQQIIEELTKKEKV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|429249594|gb|AFZ77841.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQADKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|407915532|gb|EKG09112.1| hypothetical protein MPH_13900 [Macrophomina phaseolina MS6]
Length = 432
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 11 DSLSALQSIQNEFSSNPIAQ--EIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
D+ S +Q I ++ Q +++++L K + I S+ W P H+ I GNEE+D LAK
Sbjct: 205 DNTSVIQGIDGSTPTSSQMQFEKLKSLLTKLRPI-SVETRWTPGHMKITGNEEADLLAKA 263
Query: 69 ALSSNSPSVNTIPINYFKR 87
A + + + + +R
Sbjct: 264 ATKAPNAEQGRATVAWMRR 282
>gi|339507555|gb|AEJ81189.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+ +
Sbjct: 649 SKGI 652
>gi|306477789|gb|ADM89269.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477787|gb|ADM89268.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289187298|gb|ADC92228.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQXDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|255984176|gb|ACU46160.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----IYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SSGI 655
>gi|112497892|gb|ABI20294.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----IYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|37221394|gb|AAQ89826.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SXGI 655
>gi|451170548|gb|AGF32946.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDRLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GV 711
>gi|378812675|gb|AFC60598.1| pol protein, partial [Human immunodeficiency virus]
Length = 1003
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVNQIIEKLIEKNK----VYLSWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|37935871|gb|AAO47121.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L + S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 650 SQYTLGIISS-QPTQSESPIVQQIIEELTKKEKV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|306478245|gb|ADM89497.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 360 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 415
Query: 69 AL 70
+
Sbjct: 416 GI 417
>gi|306477793|gb|ADM89271.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477785|gb|ADM89267.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477681|gb|ADM89215.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477679|gb|ADM89214.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477475|gb|ADM89112.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289187325|gb|ADC92241.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRL 65
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQIDKL 650
>gi|256011244|gb|ACU55478.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 662 SQYALGIIQAQPDKSESELVNQIIEQLIKKDK----VYLTWVPAHKGIGGNEQVDKLVSN 717
Query: 69 AL 70
+
Sbjct: 718 GI 719
>gi|256252567|dbj|BAH97677.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L + S Q S +PI Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 650 SQYTLGIISS-QPTQSESPIVQQIIEELTKKEKV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|37221396|gb|AAQ89827.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SSGI 655
>gi|306477779|gb|ADM89264.1| pol protein [Human immunodeficiency virus 1]
gi|306477781|gb|ADM89265.1| pol protein [Human immunodeficiency virus 1]
gi|306477783|gb|ADM89266.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477699|gb|ADM89224.1| pol protein [Human immunodeficiency virus 1]
Length = 827
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 478 SQCALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 533
Query: 69 AL 70
+
Sbjct: 534 GI 535
>gi|306477791|gb|ADM89270.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477677|gb|ADM89213.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|288899134|gb|ADC67099.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESELVSQIIEQLIAKEK----VYLAWVPAHKGIGGNEQVDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|77416887|sp|P18802.3|POL_HV1ND RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 1083 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 1138
Query: 69 AL 70
+
Sbjct: 1139 GI 1140
>gi|344311621|gb|AEN04333.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ Q + S + I +I L+K + + + TWVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGILQA-QPDRSESEIVXQIIEELIKKERV---YLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477693|gb|ADM89221.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477689|gb|ADM89219.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477761|gb|ADM89255.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477759|gb|ADM89254.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477753|gb|ADM89251.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477683|gb|ADM89216.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|37221398|gb|AAQ89828.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221348|gb|AAQ89803.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221344|gb|AAQ89801.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|18699214|gb|AAL78464.1|AF413997_1 pol protein [Human immunodeficiency virus 1]
Length = 583
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 240 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQADKLVSA 295
Query: 69 AL 70
+
Sbjct: 296 GI 297
>gi|339507409|gb|AEJ81116.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|306477695|gb|ADM89222.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|189310224|emb|CAP72504.1| Pol protein [SIV-wrc Pbt-05GM-X02]
Length = 1012
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72
S +P+ QEI ++L + I + TWVP+H GI GN E D L + S
Sbjct: 681 SESPLMQEIIDLLKGKEEI---YITWVPAHKGIGGNTEIDALVSAGIRS 726
>gi|37221446|gb|AAQ89852.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|1171166|gb|AAA86247.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SDSQYAIGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLV 707
Query: 67 KEAL 70
+
Sbjct: 708 SAGI 711
>gi|74273452|gb|ABA01435.1| pol protein [Human immunodeficiency virus 1]
gi|74273461|gb|ABA01443.1| pol protein [Human immunodeficiency virus 1]
gi|74273471|gb|ABA01452.1| pol protein [Human immunodeficiency virus 1]
gi|74273481|gb|ABA01461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306478227|gb|ADM89488.1| pol protein [Human immunodeficiency virus 1]
Length = 800
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 451 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 506
Query: 69 AL 70
+
Sbjct: 507 GI 508
>gi|306477747|gb|ADM89248.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477697|gb|ADM89223.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477691|gb|ADM89220.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|255984240|gb|ACU46192.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ DRL
Sbjct: 99 SQYALGIIQAQPDKSESEJVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDRLVST 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|255984016|gb|ACU46080.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----IYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SXGI 655
>gi|37221444|gb|AAQ89851.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|49574407|gb|AAT66871.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 499 SQYALGIIQAQPDKSESEVVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVRT 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|339507292|gb|AEJ81058.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE++D+L
Sbjct: 595 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQADKLVSX 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|306477745|gb|ADM89247.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477515|gb|ADM89132.1| pol protein [Human immunodeficiency virus 1]
gi|306477757|gb|ADM89253.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|37221346|gb|AAQ89802.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221448|gb|AAQ89853.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|37221358|gb|AAQ89808.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ B+ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPBKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|31980417|dbj|BAC77738.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507262|gb|AEJ81043.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|306477685|gb|ADM89217.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 499 SQYALGVIQAQPDKSESELVNQIIEQLIKKEK----IYLSWVPAHKGIGGNEQVDRLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|301508600|gb|ADK78262.1| pol protein [Simian immunodeficiency virus]
Length = 1023
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
S +P+ Q+I L+ + + + +WVP+H GI GNEE D+L + +
Sbjct: 687 SDSPLVQQIIEQLIGKEEV---YLSWVPAHKGIGGNEEVDKLVSKGI 730
>gi|295314188|gb|ADF97436.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +QS ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQSQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|37221364|gb|AAQ89811.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|339507509|gb|AEJ81166.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|306477751|gb|ADM89250.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477749|gb|ADM89249.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477743|gb|ADM89246.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|306477741|gb|ADM89245.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ ++ +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 497 SDSQYAIGIIQAQPDKSESEIVSQIIEELIKKEK----VYLTWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|37221442|gb|AAQ89850.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|37221350|gb|AAQ89804.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|37221360|gb|AAQ89809.1| pol protein [Human immunodeficiency virus 1]
gi|37221362|gb|AAQ89810.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|60651937|gb|AAX33021.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHTGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306477857|gb|ADM89303.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
L
Sbjct: 553 SAGL 556
>gi|256252260|dbj|BAH97515.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESDLVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|256011352|gb|ACU55532.1| pol protein [Human immunodeficiency virus 1]
Length = 979
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 630 SQYALGIIQAQPDKSESELVSQXIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSX 685
Query: 69 AL 70
+
Sbjct: 686 GI 687
>gi|218304263|emb|CAN87025.1| pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 23 FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72
S +P+ QEI +L + I + WVP+H GI GN E DRL + S
Sbjct: 689 MSESPLVQEIIELLKGKEEI---YIDWVPAHKGIGGNTEIDRLVSAGIRS 735
>gi|157005054|gb|ABV00757.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|37221352|gb|AAQ89805.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|37221452|gb|AAQ89855.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|328158|gb|AAA44869.1| pol polyprotein (NH2-terminus uncertain), partial [Human
immunodeficiency virus 1]
Length = 1002
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|45360200|gb|AAS59232.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAKPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+ +
Sbjct: 652 RAGV 655
>gi|339507601|gb|AEJ81212.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGILQAQPDKSESEIVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|328834348|gb|AEB52767.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325634619|gb|ADZ32596.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 707
Query: 69 AL 70
+
Sbjct: 708 GV 709
>gi|306478281|gb|ADM89515.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289187296|gb|ADC92227.1| pol protein [Human immunodeficiency virus 1]
Length = 558
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQXDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|260533734|gb|ACX45133.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESELVSQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|256011234|gb|ACU55473.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|15055077|gb|AAK82834.1| pol protein [Simian immunodeficiency virus]
Length = 279
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 26 NPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
NPI +EI N ++ + +++ WVP+H GI GNE+ D+L + +
Sbjct: 2 NPIIREIINQMIAKE---AVYLAWVPAHKGIGGNEQIDKLVSKGI 43
>gi|325634589|gb|ADZ32570.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 707
Query: 69 AL 70
+
Sbjct: 708 GV 709
>gi|306478111|gb|ADM89430.1| pol protein [Human immunodeficiency virus 1]
gi|306478133|gb|ADM89441.1| pol protein [Human immunodeficiency virus 1]
gi|306478189|gb|ADM89469.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256011404|gb|ACU55558.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEZLIXKEK----VYLSWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256252270|dbj|BAH97524.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESDLVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|57869553|gb|AAW57605.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|31980407|dbj|BAC77729.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|389748180|gb|EIM89358.1| hypothetical protein STEHIDRAFT_43359, partial [Stereum hirsutum
FP-91666 SS1]
Length = 95
Score = 38.9 bits (89), Expect = 5.0, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 45 LHFTWVPSHVGIVGNEESDRLAKEA---LSS---NSPSVNTIPINY----FKRFLKSKIL 94
L WV H G+VGNE +D AK A LSS + P++ P+ Y + SKI
Sbjct: 3 LELRWVAGHEGVVGNELADGGAKSAARGLSSALADLPAILRYPLPYNCSALVQSFTSKIT 62
Query: 95 STWNTEW 101
++W +EW
Sbjct: 63 NSWASEW 69
>gi|325634605|gb|ADZ32584.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 707
Query: 69 AL 70
+
Sbjct: 708 GV 709
>gi|306478123|gb|ADM89436.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306478095|gb|ADM89422.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477851|gb|ADM89300.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+A + S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE
Sbjct: 491 LAVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNE 546
Query: 61 ESDRLAKEAL 70
+ D+L +
Sbjct: 547 KVDKLVSAGI 556
>gi|306477775|gb|ADM89262.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|154273475|ref|XP_001537589.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415197|gb|EDN10550.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 307
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 49 WVPSHVGIVGNEESDRLAKEALSSNS 74
W P H+GI GNEE+D LAK A+SS +
Sbjct: 111 WAPGHMGIEGNEEADPLAKRAVSSTA 136
>gi|5668912|gb|AAD46066.1|AF076474_2 pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVNQIIEKLIQKNK----VYLSWVPAHKGIGGNEKVDKLVSA 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|407740442|gb|AFU33048.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407740481|gb|AFU33082.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407740489|gb|AFU33089.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|407740434|gb|AFU33041.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|328707186|ref|XP_001948714.2| PREDICTED: hypothetical protein LOC100160388 [Acyrthosiphon pisum]
Length = 362
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 29 AQEIRN---ILVKNKHILSL---HFTWVPSHVGIVGNEESDRLAK 67
E++N ++ NK I S+ +T+VP H GI+GNEE+D+LA+
Sbjct: 313 GAEVKNKEMFMILNKRIQSMDSVSWTYVPGHKGIIGNEEADKLAR 357
>gi|325634612|gb|ADZ32590.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 707
Query: 69 AL 70
+
Sbjct: 708 GV 709
>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1393
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS-----LHFTWVPSHVGIVGNEESDRL 65
DS+SALQ+I+N N Q I + ++ L L W+P H GN+ +D+L
Sbjct: 1156 DSMSALQAIRN--PGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKL 1213
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
A+ A+ + ++ + ++ +IL W EW
Sbjct: 1214 ARMAVGLDKMHPFPRLVSQERASIRKQILKEWEHEW 1249
>gi|306477853|gb|ADM89301.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 1 MATMLQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNE 60
+A + S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE
Sbjct: 491 LAVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNE 546
Query: 61 ESDRLAKEAL 70
+ D+L +
Sbjct: 547 KVDKLVSAGI 556
>gi|255984452|gb|ACU46298.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAXPDKSESEJVSQIIEQLIKKEK----IYLAWVPAHKGIGGNEQVDKLVSA 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|37221264|gb|AAQ89763.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 STGI 655
>gi|7144656|gb|AAF37324.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|7144658|gb|AAF37325.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 489 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHTGIGGNEQVDKLVSA 544
Query: 69 AL 70
+
Sbjct: 545 GI 546
>gi|329381|gb|AAA45366.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|407740450|gb|AFU33055.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|357611795|gb|EHJ67653.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 387
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAK-EALSSNSPSVNTIPINYFK---RFLKSK 92
S+ F WV +HVGIVGNE ++ AK EA + PI + K R L+S+
Sbjct: 207 SIEFAWVKAHVGIVGNEAANTAAKREAKLHKASDYTQFPITFIKHSTRVLQSR 259
>gi|353241387|emb|CCA73205.1| hypothetical protein PIIN_07159 [Piriformospora indica DSM 11827]
Length = 224
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 37 VKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP 81
VK ++ TW P H GI GNE D AK+A++ S + +P
Sbjct: 14 VKLSNVYKASLTWTPGHEGIKGNETEDEEAKKAITDGSSTAEILP 58
>gi|306478157|gb|ADM89453.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477773|gb|ADM89261.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256010895|gb|ACU55304.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 657 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|13095242|gb|AAK12197.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYSTWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|77416893|sp|P12499.3|POL_HV1Z2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 1087 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 1142
Query: 69 AL 70
+
Sbjct: 1143 GI 1144
>gi|407740474|gb|AFU33076.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|407740458|gb|AFU33062.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|306478255|gb|ADM89502.1| pol protein [Human immunodeficiency virus 1]
Length = 809
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 460 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 515
Query: 69 AL 70
+
Sbjct: 516 GI 517
>gi|306478011|gb|ADM89380.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289186952|gb|ADC92056.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEALS 71
++
Sbjct: 652 SAGIT 656
>gi|189201878|ref|XP_001937275.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187984374|gb|EDU49862.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 161
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTI 80
S+H W P H + GNE++D LAKEA + P+ +TI
Sbjct: 20 SIHLQWAPGHNDVKGNEKADTLAKEA-AKERPTTSTI 55
>gi|49574343|gb|AAT66841.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K +H WVP+H GI GN + D+L
Sbjct: 499 SQYALGIIQAQPDQSESGVVSQIIEQLIKKEK----VHLAWVPAHKGIGGNTQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|407740497|gb|AFU33096.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|407740466|gb|AFU33069.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|391379474|gb|AFM44128.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1005
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDQSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVST 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|391379436|gb|AFM44094.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 816
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 467 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 522
Query: 69 AL 70
+
Sbjct: 523 GI 524
>gi|325636902|gb|ADZ34546.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I+ ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIKELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|289469792|gb|ADC96551.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|27356948|gb|AAN34507.1| pol protein [Simian immunodeficiency virus]
Length = 657
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 23 FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72
S +P+ QEI +L + I + WVP+H GI GN E DRL + S
Sbjct: 418 MSESPLVQEIIELLKGKEEI---YIDWVPAHKGIGGNTEIDRLVSAGIRS 464
>gi|7144660|gb|AAF37326.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 489 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHTGIGGNEQVDKLVSA 544
Query: 69 AL 70
+
Sbjct: 545 GI 546
>gi|339507280|gb|AEJ81052.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDKSESEIVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|328726334|ref|XP_003248854.1| PREDICTED: hypothetical protein LOC100570279 [Acyrthosiphon pisum]
Length = 401
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 29 AQEIRN---ILVKNKHILSL---HFTWVPSHVGIVGNEESDRLAK 67
E++N ++ NK I S+ +T+VP H GI+GNEE+D+LA+
Sbjct: 352 GAEVKNKEMFMILNKRIQSMDSVSWTYVPGHKGIIGNEEADKLAR 396
>gi|306477777|gb|ADM89263.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|301503587|gb|ADK75306.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 655 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|301503572|gb|ADK75293.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 655 SQYSLGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|255984098|gb|ACU46121.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPDKSESEIVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|158967438|gb|ABW86778.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K+K ++ +WVP+H GI GNE+ D+L +
Sbjct: 654 SQYALGIIQAQPDKSESELVNQIIEKLIXKDK----VYLSWVPAHKGIGGNEQVDKLVSK 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1292
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 11 DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILS-----LHFTWVPSHVGIVGNEESDRL 65
DS+SALQ+I+N N Q I + ++ L L W+P H GN+ +D+L
Sbjct: 1055 DSMSALQAIRN--PGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKL 1112
Query: 66 AKEALSSNSPSVNTIPINYFKRFLKSKILSTWNTEW 101
A+ A+ + ++ + ++ +IL W EW
Sbjct: 1113 ARMAVGLDKMHPFPRLVSQERASIRKQILKEWEHEW 1148
>gi|306478159|gb|ADM89454.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306478009|gb|ADM89379.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256010791|gb|ACU55252.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 661 SQYALGIIQAQPDKSESELVSQIIEQLIQKEK----VYLAWVPAHKGIGGNEQVDKLVSQ 716
Query: 69 AL 70
+
Sbjct: 717 GI 718
>gi|238633516|gb|ACR51535.1| pol protein [Human immunodeficiency virus 1]
Length = 984
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 5 LQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
L S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+
Sbjct: 649 LVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDK 704
Query: 65 LAKEAL 70
L +
Sbjct: 705 LVSSGI 710
>gi|74315733|gb|ABA02460.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 651 SQYALGIIQAQPDRSESELVNQIIEQLIKKDK----IYLTWVPAHKGIGGNEQVDKLVSN 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|339507643|gb|AEJ81233.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K+K ++ TWVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAQPDKSESELVNQIIEQLINKDK----VYLTWVPAHKGIGGNEQVDKLVSX 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|339507441|gb|AEJ81132.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|289469868|gb|ADC96589.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESDLVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|55275187|gb|AAV49406.1| pol protein [Human immunodeficiency virus 1]
gi|55275237|gb|AAV49451.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAHPDKSESELVSQIIEQLIKKEK----VYLAWVPAHTGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|344311623|gb|AEN04334.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ Q + S + I +I L+K + + + TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGILQA-QPDRSESEIVNQIIEELIKKERV---YLTWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|358334332|dbj|GAA52780.1| ATP-binding cassette transporter, partial [Clonorchis sinensis]
Length = 259
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 247 ARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIRKPLN-IIEDKNG 305
AR K QR + E ++I Q+ N + L R GP ++ I+D+NG
Sbjct: 77 ARLKSQRNIPAGSEHNPARRIIRRQKARNARRSLQLIR----TTGPGNPSVSETIKDRNG 132
Query: 306 NKISNKEERLERWREHFQHVFNQ---QTTVNLEGIEIDPITDNLPNDERPTENEI 357
I NKEERL+RW E+F+ + T + L+G +++ T N+ E PT +E+
Sbjct: 133 MAILNKEERLDRWAEYFEQQLSWPPVATRLELKG-DVELWTVNV---EPPTASEV 183
>gi|339507623|gb|AEJ81223.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEKVDKLV 648
Query: 67 KEAL 70
+ +
Sbjct: 649 SDGI 652
>gi|339507391|gb|AEJ81107.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|306478007|gb|ADM89378.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256011194|gb|ACU55453.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDKSESELVSQIIEKLIQKER----VYLTWVPAHKGIGGNEQVDKLVSS 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|255984102|gb|ACU46123.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|212674703|gb|ACJ37120.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQS + S+ + Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGILQSQPDRSESDLVNQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|333102127|gb|AEF14297.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GNE D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEHIDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|395455439|gb|AFN62122.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q++ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQALPDKSESELVNQIIEQLIQKEK----VYLSWVPAHKGIGGNEQVDKLVST 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|339507214|gb|AEJ81019.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 593 SDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQXDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|328834424|gb|AEB52835.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAHPDRSESEMVNQIIEKLIEKNK----VYLSWVPAHKGIGGNEQVDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|306478343|gb|ADM89546.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q + S + + EI L+K + + + TWVP+H GI GNE+ D+
Sbjct: 494 NIVTDSQYALGXIHAQPDKSESELVSEIIEQLIKKEKV---YLTWVPAHKGIGGNEQVDK 550
Query: 65 LAKEAL 70
L +
Sbjct: 551 LVSXGI 556
>gi|306416464|gb|ADM87079.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256011008|gb|ACU55360.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S I+Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESEIISQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|56131601|gb|AAV80381.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S +AQ I ++ K + ++ +WVP+H GI GNE+ D+L
Sbjct: 650 SQYALGIIQAQPDKSESELVAQIIEQLIKKER----VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 69 AL 70
+
Sbjct: 706 GI 707
>gi|37935970|gb|AAO47208.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q S +PI Q+I L K + + + WVP+H GI GNE+ D+
Sbjct: 645 NIVTDSQFALGIISSQPTQSDSPIVQQIIEELTKKEQV---YLAWVPAHKGIGGNEKIDK 701
Query: 65 LA 66
L
Sbjct: 702 LV 703
>gi|255984946|gb|ACU46545.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGXIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVST 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|256252240|dbj|BAH97497.1| Pol [Human immunodeficiency virus 1]
Length = 1008
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 659 SQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSK 714
Query: 69 AL 70
+
Sbjct: 715 GI 716
>gi|164415864|gb|AAU14931.2| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDQSESGLVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|159031771|dbj|BAF91857.1| polyprotein [Human immunodeficiency virus 1]
Length = 539
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 470 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLSWVPAHKGIGGNEQVDKLVSN 525
Query: 69 AL 70
+
Sbjct: 526 GI 527
>gi|358331901|dbj|GAA50660.1| hypothetical protein CLF_104875 [Clonorchis sinensis]
Length = 711
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 250 KCQ--REVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVGPIR-----KPL--NII 300
+CQ + V +E WW +K ++ + N + L+ P+R KP+ II
Sbjct: 615 RCQVKQSVHADQEGWWTRKAEKMGDNKNAGNVRKLF--------PVRSTGTLKPIVSEII 666
Query: 301 EDKNGNKISNKEERLERWREHF 322
D+NG+ IS+K +RL+R ++F
Sbjct: 667 SDQNGSLISSKAKRLDRCAQYF 688
>gi|306478155|gb|ADM89452.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL I Q + S + + EI L+K + I + TWVP+H GI GNE+ D+
Sbjct: 494 NIVTDSQYALGVIHAQPDKSESELVSEIIEQLIKKEKI---YLTWVPAHKGIGGNEQVDK 550
Query: 65 LAKEAL 70
L +
Sbjct: 551 LVSNGI 556
>gi|159031787|dbj|BAF91865.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 468 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLSWVPAHKGIGGNEQVDKLVSN 523
Query: 69 AL 70
+
Sbjct: 524 GI 525
>gi|114801485|gb|ABI80059.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K + ++ WVP+H GI GNE+ D+LA
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKER----VYLAWVPAHKGIGGNEQVDKLASS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|13095061|gb|AAK12123.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDQSESELVSQVIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|385765470|gb|AFI79266.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSA 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|288187634|gb|ADC42309.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +QS ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQSQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQIDKLVSA 653
Query: 69 AL 70
+
Sbjct: 654 GI 655
>gi|256252250|dbj|BAH97506.1| Pol [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 653 SQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSK 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|25166781|gb|AAN73574.1|AF484493_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ K+K ++ +WVP+H GI GNE+ DRL
Sbjct: 1084 SQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNEQVDRLVSS 1139
Query: 69 AL 70
+
Sbjct: 1140 GI 1141
>gi|333102057|gb|AEF14234.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ SL +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYSLGIIQTQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|338224553|gb|AEI88160.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ K K ++ +WVP+H GI GNE+ DRL
Sbjct: 654 SQYALGIIQAQPDRSESEAVNQIIEELIKKEK----VYLSWVPAHKGIGGNEQVDRLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306478265|gb|ADM89507.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|306477923|gb|ADM89336.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESETVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|302698281|ref|XP_003038819.1| RnaseH domain, transposon factor [Schizophyllum commune H4-8]
gi|300112516|gb|EFJ03917.1| RnaseH domain, transposon factor [Schizophyllum commune H4-8]
Length = 272
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 44 SLHFTWVPSHVGIVGNEESDRLAKEALSSNSPSVNTIP---INYFKRFLKSKILSTWNTE 100
+L+ WVP H + GN+E+D LAK A+ S T+P N +R K + W +E
Sbjct: 67 TLNIAWVPGHQDVRGNDEADELAKAAVELGS----TLPGSRANAIRR-AKGRAAREWKSE 121
Query: 101 W 101
W
Sbjct: 122 W 122
>gi|256011582|gb|ACU55647.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|226348538|gb|ACO50588.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +QS ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 430 TDSQYALGIIQSQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 485
Query: 67 KEAL 70
+
Sbjct: 486 STGI 489
>gi|25166801|gb|AAN73592.1|AF484495_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 1084 SQYALGIIQAQPDKSESGLVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 1139
Query: 69 AL 70
+
Sbjct: 1140 GI 1141
>gi|374349633|gb|AEZ35444.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 987
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ K K ++ +WVP+H GI GNE+ D+L E
Sbjct: 638 SQYALGIIQAQPDRSESEVVNQIIEELIKKEK----IYLSWVPAHKGIGGNEKVDKLVSE 693
Query: 69 AL 70
+
Sbjct: 694 GI 695
>gi|363584098|gb|AEW27635.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1005
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSA 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|339507671|gb|AEJ81247.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ + S + I +I L+K + I + WVP+H GI GNE+ D+
Sbjct: 590 NIVTDSQYALGIIQGQPDISESEIVNQIIEELIKKEKI---YLAWVPAHKGIGGNEQVDK 646
Query: 65 LAKEAL 70
L +
Sbjct: 647 LVSNGI 652
>gi|339507178|gb|AEJ81001.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|256011740|gb|ACU55726.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSS 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|429249638|gb|AFZ77863.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESEAVSQIIEELIKKEK----VYLSWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|255984514|gb|ACU46329.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIKKER----VYLTWVPAHKGIGGNEQVDKLVSX 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|55735986|gb|AAV59715.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|327458217|gb|AEA76548.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|117643962|gb|ABK51654.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESDLVNQIIEQLIKKDK----IYLSWVPAHKGIGGNEQVDKLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|289187280|gb|ADC92219.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHTGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|289187209|gb|ADC92184.1| pol protein [Human immunodeficiency virus 1]
Length = 655
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGILQAQPDKSESELVSQIIEQLIQKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|288187931|gb|ADC42452.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESDLVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SSGI 655
>gi|256011066|gb|ACU55389.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +QS ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQSQPDKSESELVNQIIEELIKKEK----VYLTWVPAHKGIGGNEKVDKLVSN 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507517|gb|AEJ81170.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDQSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SSGI 652
>gi|339507226|gb|AEJ81025.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAQPDKSESEIVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSN 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|256011196|gb|ACU55454.1| pol protein [Human immunodeficiency virus 1]
Length = 952
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 5 LQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
J S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+
Sbjct: 599 JVTDSQYALGXIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDK 654
Query: 65 LAKEAL 70
L +
Sbjct: 655 LVSAGI 660
>gi|256010913|gb|ACU55313.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+I ++ S ++Q I ++ K K ++ W P+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAIPDKSESELVSQIIEELIKKEK----VYLAWXPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256010799|gb|ACU55256.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|170778935|gb|ACB36867.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEIVSQIIEQLIQKDK----VYLAWVPAHKGIGGNEQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|429249600|gb|AFZ77844.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESEAVSQIIEELIKKEK----VYLSWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|306478351|gb|ADM89550.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESEIVSQIIEQLIQKEK----VYLAWVPAHXGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|288187813|gb|ADC42394.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGVIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SSGI 655
>gi|51980231|gb|AAU20784.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ N+ S + Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPNKSESELVNQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|11385951|gb|AAG35039.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S + Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLV 651
Query: 67 KEALS 71
+S
Sbjct: 652 SAGIS 656
>gi|293652732|gb|ADE61218.1| pol protein, partial [Simian immunodeficiency virus]
Length = 997
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSI--QNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS L I Q + S +P+ +I L+K + I + +WVP+H GI GNE+ D+
Sbjct: 646 NIVTDSQYVLGIINSQPDHSESPLVNDIIEQLMKKEKI---YLSWVPAHKGIGGNEQVDK 702
Query: 65 LAKEAL 70
L + +
Sbjct: 703 LVSQGI 708
>gi|451994160|gb|EMD86631.1| hypothetical protein COCHEDRAFT_1115199, partial [Cochliobolus
heterostrophus C5]
Length = 115
Score = 38.5 bits (88), Expect = 6.1, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 28 IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA----------LSSNSPSV 77
IAQ+I+ L ++H W+P+H+G+ GN+ D+ AKEA LS+N+P+
Sbjct: 29 IAQQIQQ-LQDRGQTATVH--WIPAHLGMPGNKAIDKAAKEATRCREDGRRSLSANAPAN 85
Query: 78 NTIPINYFKRFLKSKILSTWNTEW 101
+ + K + K++ W +W
Sbjct: 86 SYAIRSTVKSWCKTQAEREWIAKW 109
>gi|441442474|gb|AGC32116.1| pol protein, partial [Human immunodeficiency virus 1]
gi|441442499|gb|AGC32132.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 972
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQMIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|407227200|emb|CCA61244.1| Pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ + S + I +I L+K + + + TWVP+H GI GNE+ D+
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERV---YLTWVPAHKGIGGNEQVDK 704
Query: 65 LAKEAL 70
L +
Sbjct: 705 LVSSGI 710
>gi|256011688|gb|ACU55700.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 658 SQYALGIIQAQPDKSESEXVSQIIEQLIQKXK----VYLAWVPAHKGIGGNEQVDKLVSH 713
Query: 69 AL 70
+
Sbjct: 714 GI 715
>gi|255984140|gb|ACU46142.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESDLVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SXGI 655
>gi|444892702|gb|AGE13510.1| pol protein, partial [Human immunodeficiency virus]
Length = 1009
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +PI Q+I L K + + TWVP+H GI GNE+ D+L
Sbjct: 658 SSQPTQSESPIVQQIIEELTKKDKV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|441442508|gb|AGC32138.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 972
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQMIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|327458219|gb|AEA76549.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|256011658|gb|ACU55685.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSDSEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 707
Query: 69 AL 70
+
Sbjct: 708 GI 709
>gi|255984274|gb|ACU46209.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAXPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|441442511|gb|AGC32140.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 972
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQMIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|328834498|gb|AEB52901.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1009
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+L
Sbjct: 658 SDSQYALGIIQAQPDKSESELVSQIIEELIKKER----VYLTWVPAHKGIGGNEQVDKLV 713
Query: 67 KEAL 70
+
Sbjct: 714 STGI 717
>gi|327458343|gb|AEA76611.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|55275257|gb|AAV49469.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GN++ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNDQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|407732992|gb|AFU26802.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|391379878|gb|AFM44489.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 654 SQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSK 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325634558|gb|ADZ32543.1| pol protein [Human immunodeficiency virus 1]
gi|325634574|gb|ADZ32557.1| pol protein [Human immunodeficiency virus 1]
gi|325636025|gb|ADZ33804.1| pol protein [Human immunodeficiency virus 1]
gi|325636064|gb|ADZ33838.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|289187302|gb|ADC92230.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESEVVSQIIEELIKKEK----IYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|186940983|dbj|BAG31115.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1007
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I+ ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 658 SQYALGIIQAQPDKSESELVSQIIKQLINKEK----VYLAWVPAHKGIGGNEQVDKLVSA 713
Query: 69 AL 70
+
Sbjct: 714 GI 715
>gi|339507198|gb|AEJ81011.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGILQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEKVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SNGI 652
>gi|325636088|gb|ADZ33859.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325635940|gb|ADZ33730.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325634566|gb|ADZ32550.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256011676|gb|ACU55694.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 657 SQYALGIIQAQPDKSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 712
Query: 69 AL 70
+
Sbjct: 713 GI 714
>gi|256011126|gb|ACU55419.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 5 LQNSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
+ + S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+
Sbjct: 653 IXSDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDK 708
Query: 65 LAKEAL 70
L +
Sbjct: 709 LVSXGI 714
>gi|256010795|gb|ACU55254.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 662 SQYALGIIQAQPDKSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 717
Query: 69 AL 70
+
Sbjct: 718 GI 719
>gi|255984660|gb|ACU46402.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQXDKLVSA 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|341571665|gb|AEK79466.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L +
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSD 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507485|gb|AEJ81154.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L LQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGILQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEKVDKLVSA 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|281331916|emb|CAY83134.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1435
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ + Q I ++ K+K ++ +WVP+H GI GNE+ D+L
Sbjct: 1086 SQYALGIIQAQPDKSESDLVNQIIEQLIQKDK----VYLSWVPAHKGIGGNEQVDKLVSS 1141
Query: 69 AL 70
+
Sbjct: 1142 GI 1143
>gi|256010931|gb|ACU55322.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGIIQAQPDKSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|255984842|gb|ACU46493.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 99 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVST 154
Query: 69 AL 70
+
Sbjct: 155 GI 156
>gi|14041623|emb|CAC38389.1| pol [Human immunodeficiency virus 1]
Length = 1009
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 18 SIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S Q S +P+ Q+I L K + + + TWVP+H GI GNE+ D+L
Sbjct: 658 SSQPTQSESPLVQQIIEELTKKEQV---YLTWVPAHKGIGGNEKIDKLV 703
>gi|410585816|gb|AFV74189.1| pol protein, partial [Human immunodeficiency virus]
Length = 1006
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ + S + + +I L+K + + H +WVP+H GI GNE+ D+
Sbjct: 651 NIVTDSQYALGIIQAQPDRSESKVVNQIIEELIKKEKVY--HLSWVPAHKGIGGNEQVDK 708
Query: 65 LAKEAL 70
L +
Sbjct: 709 LVSSGI 714
>gi|407733026|gb|AFU26831.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|407732984|gb|AFU26795.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733031|gb|AFU26835.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733041|gb|AFU26843.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|306478185|gb|ADM89467.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|256011660|gb|ACU55686.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLSWVPAHKGIGGNEQVDKLVSN 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|222428569|gb|ACM50185.1| pol protein [Human immunodeficiency virus 1]
Length = 1017
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 668 SQYALGIIQAQPDQSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 723
Query: 69 AL 70
+
Sbjct: 724 GI 725
>gi|190411412|gb|ACE78477.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESDLVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|55275117|gb|AAV49343.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ TWVP+H GI GN++ D+L
Sbjct: 654 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNDQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|13569329|gb|AAK31063.1|AF286235_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1009
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 656 SQYALGIIQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSS 711
Query: 69 AL 70
+
Sbjct: 712 GI 713
>gi|390351605|ref|XP_003727690.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Strongylocentrotus purpuratus]
Length = 715
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 180 DLSSHHVTLD-LANRIVQSYTGIQADLKYGV-------SGILSEIMDLVQDVVTSSEAGE 231
D S H+ +D + +I Q++ D+ G+ + I E++DL ++ +A +
Sbjct: 31 DHSDTHLDIDSIWEKIKQAFNSTAKDV-LGMKKNRPQEAWISQEVLDLSEERSKIKQAKQ 89
Query: 232 DGLELPVARKREYQEARQKCQREVRRIREEWWNKKINELQEFANKNDTYNLYRGMKSAVG 291
+ L K Y ++ +R+ R ++ W + ++ + +Y +K
Sbjct: 90 NDPSL----KPRYNFLNREIKRKTRSCKDAWLQDLCSRVESAHQAAKSKEVYAAIKKITK 145
Query: 292 PIRKPLNIIEDKNGNKISNKEERLERWREHFQHVFNQQTTVNLEGIEIDPITDNLPN 348
K + ++ K G ++ E +RW+E+++ ++N+ N D + ++LPN
Sbjct: 146 SASKRMQSVKSKTGRTLTEISEVKKRWKENYEELYNEHNPKN------DTVANSLPN 196
>gi|327458263|gb|AEA76571.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDQSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|325636103|gb|ADZ33872.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|289469862|gb|ADC96586.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQVDKLVST 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289187339|gb|ADC92248.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQIIEQLIXKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|289187319|gb|ADC92238.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESDLVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQIDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SAGI 655
>gi|288899138|gb|ADC67101.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVST 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|255984010|gb|ACU46077.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K + ++ WVP+H GI GNE+ D+L
Sbjct: 598 SQYALGIIQAQPDKSESELVSQIIEQLIKKER----VYLAWVPAHKGIGGNEQVDKLVSA 653
Query: 69 ALS 71
+S
Sbjct: 654 GIS 656
>gi|37682958|gb|AAQ98522.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I +++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESEVVNQIIEDLITKEK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|71794624|emb|CAI28863.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S + Q I ++ KNK ++ +WVP+H GI GNE+ D+L
Sbjct: 1081 SQYALGIIQAQPDRSESELVNQIIEKLIEKNK----VYLSWVPAHKGIGGNEQVDKLVSN 1136
Query: 69 AL 70
+
Sbjct: 1137 GI 1138
>gi|407741491|gb|AFU33908.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 NSSKDSLSALQSIQNE--FSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDR 64
N DS AL IQ + S + I +I L+K K + + +WVP+H GI GNE+ D+
Sbjct: 648 NIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKKKV---YLSWVPAHKGIGGNEQVDK 704
Query: 65 LAKEAL 70
L +
Sbjct: 705 LVSSGI 710
>gi|391379585|gb|AFM44227.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S + Q I ++ K K ++ TWVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEIVNQIIEQLIKKEK----VYLTWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|325636080|gb|ADZ33852.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEQLISKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|331240525|ref|XP_003332913.1| hypothetical protein PGTG_14072 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 339
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 43 LSLHFTWVPSHVGIVGNEESDRLAKEALSSNS 74
L++ F W P H I+GNE +D LAK+AL S S
Sbjct: 173 LNVTFAWCPGHRDIMGNEMADTLAKDALESPS 204
>gi|407733036|gb|AFU26839.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|407733021|gb|AFU26827.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|407733016|gb|AFU26823.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|407733008|gb|AFU26816.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 651 SQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 69 AL 70
+
Sbjct: 707 GI 708
>gi|339507651|gb|AEJ81237.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L JQ+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIJQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSN 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|339507415|gb|AEJ81119.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 595 SQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQXDKLVSS 650
Query: 69 AL 70
+
Sbjct: 651 GI 652
>gi|339507216|gb|AEJ81020.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
+ S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 593 SDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 SAGI 652
>gi|306477901|gb|ADM89325.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K + ++ TWVP+H GI GNE+ D+L
Sbjct: 499 SQYALGIIQAQPDKSESELVSQIIEQLINKER----IYLTWVPAHKGIGGNEQVDKLVSA 554
Query: 69 AL 70
+
Sbjct: 555 GI 556
>gi|289469786|gb|ADC96548.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGVIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SAGI 556
>gi|289187382|gb|ADC92269.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 596 TDSQYALGIIQAQPDKSESKIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 651
Query: 67 KEAL 70
+
Sbjct: 652 SSGI 655
>gi|256011444|gb|ACU55578.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 660 SQYALGIIQAQPDKSESDLVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 715
Query: 69 AL 70
+
Sbjct: 716 GI 717
>gi|213495596|gb|ACJ49062.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESEVVSQIIEELIKKEK----IYLAWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|170778915|gb|ACB36857.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESEXVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 STGI 556
>gi|2570314|gb|AAC97575.1| gag-Pol fusion [Human immunodeficiency virus 1]
Length = 1437
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 1088 SQYALGIIQAQPDKSESEVVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSN 1143
Query: 69 AL 70
+
Sbjct: 1144 GI 1145
>gi|1772626|gb|AAC32294.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|339507314|gb|AEJ81069.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLV 648
Query: 67 KEAL 70
+
Sbjct: 649 STGI 652
>gi|325636212|gb|ADZ33964.1| pol protein [Human immunodeficiency virus 1]
gi|325636220|gb|ADZ33971.1| pol protein [Human immunodeficiency virus 1]
gi|325636236|gb|ADZ33985.1| pol protein [Human immunodeficiency virus 1]
gi|325636244|gb|ADZ33992.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ + S ++Q I ++ K+K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDRSESELVSQIIEQLIKKDK----VYLAWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|256011472|gb|ACU55592.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 654 SQYTLGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|190411392|gb|ACE78459.1| pol protein [Human immunodeficiency virus 1]
gi|190411402|gb|ACE78468.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S+ ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 654 SQYALGIIQAQPDKSESDLVSQIIEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSA 709
Query: 69 AL 70
+
Sbjct: 710 GI 711
>gi|5738567|emb|CAB53043.1| POL protein [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 655 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 710
Query: 69 AL 70
+
Sbjct: 711 GI 712
>gi|22532293|gb|AAM97886.1|AF492624_2 pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 652 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSH 707
Query: 69 AL 70
+
Sbjct: 708 GI 709
>gi|8886633|gb|AAF80532.1|AF179368_2 pol [Human immunodeficiency virus 1]
Length = 1002
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|327458289|gb|AEA76584.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S + Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDKSESEXVXQIIEXLIXKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 SSGI 556
>gi|38491734|gb|AAR22118.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 9 SKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKE 68
S+ +L +Q+ ++ S ++Q I ++ K K ++ +WVP+H GI GNE+ D+L
Sbjct: 653 SQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 69 AL 70
+
Sbjct: 709 GI 710
>gi|13891890|gb|AAG50324.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 7 NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
S+ +L +Q+ ++ S ++Q I ++ K K ++ WVP+H GI GNE+ D+L
Sbjct: 497 TDSQYALGIIQAQPDQSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLV 552
Query: 67 KEAL 70
+
Sbjct: 553 STGI 556
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,170,121,227
Number of Sequences: 23463169
Number of extensions: 258975176
Number of successful extensions: 638739
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 5361
Number of HSP's that attempted gapping in prelim test: 638051
Number of HSP's gapped (non-prelim): 5932
length of query: 399
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 254
effective length of database: 8,957,035,862
effective search space: 2275087108948
effective search space used: 2275087108948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 78 (34.7 bits)