Query psy17038
Match_columns 399
No_of_seqs 341 out of 1284
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:12:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.2 2.1E-11 4.6E-16 109.9 6.4 66 4-73 62-143 (161)
2 PF00075 RNase_H: RNase H; In 99.2 3.8E-11 8.3E-16 103.0 6.5 65 4-71 58-132 (132)
3 PRK00203 rnhA ribonuclease H; 99.2 4E-11 8.6E-16 106.7 6.0 66 4-73 62-143 (150)
4 PRK08719 ribonuclease H; Revie 99.1 7.1E-11 1.5E-15 105.1 6.1 62 6-71 69-146 (147)
5 COG0328 RnhA Ribonuclease HI [ 99.1 1.8E-10 3.9E-15 102.7 5.9 68 3-73 63-146 (154)
6 cd06222 RnaseH RNase H (RNase 98.7 6.4E-08 1.4E-12 79.9 7.4 68 3-70 61-130 (130)
7 KOG3752|consensus 98.1 3.3E-06 7.2E-11 84.4 6.2 69 3-72 276-365 (371)
8 PRK13907 rnhA ribonuclease H; 97.7 7.6E-05 1.6E-09 64.2 6.4 62 4-72 62-127 (128)
9 PF13456 RVT_3: Reverse transc 97.4 0.00044 9.6E-09 54.4 6.6 61 4-71 22-86 (87)
10 PRK07708 hypothetical protein; 97.0 0.0017 3.6E-08 61.7 6.6 63 5-73 142-209 (219)
11 PRK07238 bifunctional RNase H/ 96.7 0.0037 8E-08 63.5 6.9 63 4-73 66-133 (372)
12 PF13966 zf-RVT: zinc-binding 90.1 0.19 4.1E-06 40.3 1.9 31 152-192 51-81 (86)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.20 E-value=2.1e-11 Score=109.93 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=50.7
Q ss_pred ccEEEEcCcHHHHHHHhc---------cC--CCC-----hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHH
Q psy17038 4 MLQNSSKDSLSALQSIQN---------EF--SSN-----PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~---------~~--~~~-----~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak 67 (399)
..|.|+|||++|+++|.. |. +.+ ++++.|.+++.. ..|+|.|||||+|++|||.||+||+
T Consensus 62 ~~v~I~TDS~yvi~~i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~----~~v~~~wVkgHsg~~gNe~aD~LA~ 137 (161)
T PRK06548 62 RPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN----RNIRMSWVNAHTGHPLNEAADSLAR 137 (161)
T ss_pred ceEEEEeChHHHHHHHHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc----CceEEEEEecCCCCHHHHHHHHHHH
Confidence 469999999999999994 22 112 333344444332 5799999999999999999999999
Q ss_pred HHhhcC
Q psy17038 68 EALSSN 73 (399)
Q Consensus 68 ~a~~~~ 73 (399)
+|+...
T Consensus 138 ~aa~~~ 143 (161)
T PRK06548 138 QAANNF 143 (161)
T ss_pred HHHHHh
Confidence 998665
No 2
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.18 E-value=3.8e-11 Score=103.01 Aligned_cols=65 Identities=38% Similarity=0.657 Sum_probs=51.8
Q ss_pred ccEEEEcCcHHHHHHHhc-----cC---CCC-hHHHHHHHHHHhcCCCccEEEEEeccCCCC-CCChhhhHHHHHHhh
Q psy17038 4 MLQNSSKDSLSALQSIQN-----EF---SSN-PIAQEIRNILVKNKHILSLHFTWVPSHVGI-VGNEESDRLAKEALS 71 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~-----~~---~~~-~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi-~gNe~AD~~Ak~a~~ 71 (399)
..|+|+|||++++.+|.. .+ ... ++...|.+++.. . ..|.|.|||||+|+ .||+.||+|||.|+.
T Consensus 58 ~~v~I~tDS~~v~~~l~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~--~~v~~~~V~~H~~~~~~N~~aD~lAk~a~~ 132 (132)
T PF00075_consen 58 RKVTIYTDSQYVLNALNKWLHGNGWKKTSNGRPIKNEIWELLSR-G--IKVRFRWVPGHSGVPQGNERADRLAKEAAQ 132 (132)
T ss_dssp SEEEEEES-HHHHHHHHTHHHHTTSBSCTSSSBHTHHHHHHHHH-S--SEEEEEESSSSSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHhccccccccccccccchhheeecccc-c--eEEeeeeccCcCCCchhHHHHHHHHHHhcC
Confidence 578999999999998887 22 112 466677777744 2 78999999999999 699999999999973
No 3
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.16 E-value=4e-11 Score=106.74 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=51.2
Q ss_pred ccEEEEcCcHHHHHHHhccC---------C--CC-----hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHH
Q psy17038 4 MLQNSSKDSLSALQSIQNEF---------S--SN-----PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~---------~--~~-----~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak 67 (399)
..|.|+|||++++++|..|. . .+ ++++.|.+++.. ..|.|.|||||+|++||+.||+||+
T Consensus 62 ~~v~I~tDS~yvi~~i~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~----~~v~~~wV~~H~~~~~N~~AD~lA~ 137 (150)
T PRK00203 62 CEVTLYTDSQYVRQGITEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKR----HQIKWHWVKGHAGHPENERCDELAR 137 (150)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHHcCCcccCCCccccHHHHHHHHHHhcc----CceEEEEecCCCCCHHHHHHHHHHH
Confidence 46899999999999998631 1 11 233444444322 6899999999999999999999999
Q ss_pred HHhhcC
Q psy17038 68 EALSSN 73 (399)
Q Consensus 68 ~a~~~~ 73 (399)
+|+...
T Consensus 138 ~a~~~~ 143 (150)
T PRK00203 138 AGAEEA 143 (150)
T ss_pred HHHHHh
Confidence 998876
No 4
>PRK08719 ribonuclease H; Reviewed
Probab=99.13 E-value=7.1e-11 Score=105.09 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=46.5
Q ss_pred EEEEcCcHHHHHHHh--------ccC-CC--C-----hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHH
Q psy17038 6 QNSSKDSLSALQSIQ--------NEF-SS--N-----PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69 (399)
Q Consensus 6 i~I~tDs~sal~al~--------~~~-~~--~-----~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a 69 (399)
..|+|||++|+++|. +.+ .+ . ++.+.|..+.+ ...|+|.|||||+|++|||.||+||++|
T Consensus 69 ~~i~tDS~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~----~~~i~~~~VkgH~g~~~Ne~aD~lA~~a 144 (147)
T PRK08719 69 DVIYSDSDYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA----RKYVEVEKVTAHSGIEGNEAADMLAQAA 144 (147)
T ss_pred CEEEechHHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC----CCcEEEEEecCCCCChhHHHHHHHHHHH
Confidence 579999999999994 333 11 1 22333333333 2679999999999999999999999999
Q ss_pred hh
Q psy17038 70 LS 71 (399)
Q Consensus 70 ~~ 71 (399)
+.
T Consensus 145 ~~ 146 (147)
T PRK08719 145 AE 146 (147)
T ss_pred hh
Confidence 75
No 5
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.8e-10 Score=102.73 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=53.1
Q ss_pred cccEEEEcCcHHHHHHHhccC----CCC------------hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHH
Q psy17038 3 TMLQNSSKDSLSALQSIQNEF----SSN------------PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~----~~~------------~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~A 66 (399)
.+.|.|+|||++++++|..|. ... ++++.+.++.... ..|.+.|||||+|.++||+||+||
T Consensus 63 ~~~v~l~tDS~yv~~~i~~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~---~~v~~~WVkgH~g~~~NeraD~LA 139 (154)
T COG0328 63 ACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRH---ELVFWEWVKGHAGHPENERADQLA 139 (154)
T ss_pred CceEEEEecHHHHHHHHHHHHhhccccCccccccCccccHHHHHHHHHHHhhC---CeEEEEEeeCCCCChHHHHHHHHH
Confidence 467999999999999999552 111 2344444454443 389999999999999999999999
Q ss_pred HHHhhcC
Q psy17038 67 KEALSSN 73 (399)
Q Consensus 67 k~a~~~~ 73 (399)
+.|+...
T Consensus 140 ~~~~~~~ 146 (154)
T COG0328 140 REAARAA 146 (154)
T ss_pred HHHHHhh
Confidence 9998765
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=98.67 E-value=6.4e-08 Score=79.93 Aligned_cols=68 Identities=31% Similarity=0.427 Sum_probs=50.0
Q ss_pred cccEEEEcCcHHHHHHHhccCC--CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHh
Q psy17038 3 TMLQNSSKDSLSALQSIQNEFS--SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~~--~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~ 70 (399)
...+.|++||++++..+.++.. .......++.+.....+...+.|.|||+|+|+.+|+.||.+|+.|.
T Consensus 61 ~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 61 GKKVNIYTDSQYVINALTGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred CceEEEEECHHHHHHHhhccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 3568999999999999998752 1222222333322222237899999999999999999999999873
No 7
>KOG3752|consensus
Probab=98.15 E-value=3.3e-06 Score=84.41 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=50.8
Q ss_pred cccEEEEcCcHHHHHHHhccCC-----------CCh----------HHHHHHHHHHhcCCCccEEEEEeccCCCCCCChh
Q psy17038 3 TMLQNSSKDSLSALQSIQNEFS-----------SNP----------IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEE 61 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~~-----------~~~----------~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~ 61 (399)
+.+++|.|||.+++++|+.|-. .++ .+..+-++.+.. ....|++.|||||.||.||++
T Consensus 276 ~~kv~I~TDS~~~i~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~-~~~~vq~~~V~Gh~gi~gne~ 354 (371)
T KOG3752|consen 276 INKVVIRTDSEYFINSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEI-SNKKVQQEYVGGHSGILGNEM 354 (371)
T ss_pred CCcEEEEechHHHHHHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhh-ccCceEEEEecCcCCcchHHH
Confidence 4589999999999999997741 112 112233333331 127999999999999999999
Q ss_pred hhHHHHHHhhc
Q psy17038 62 SDRLAKEALSS 72 (399)
Q Consensus 62 AD~~Ak~a~~~ 72 (399)
||.+|++++..
T Consensus 355 Ad~lARkgs~~ 365 (371)
T KOG3752|consen 355 ADALARKGSTL 365 (371)
T ss_pred HHHHHhhhhhh
Confidence 99999998543
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=97.72 E-value=7.6e-05 Score=64.20 Aligned_cols=62 Identities=23% Similarity=0.403 Sum_probs=46.7
Q ss_pred ccEEEEcCcHHHHHHHhccCCCC----hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhc
Q psy17038 4 MLQNSSKDSLSALQSIQNEFSSN----PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~~~~----~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~ 72 (399)
..|.|+|||+++++.+.+.+... .+.+.+..++... ..+.|.|||.+ .|+.||.+|+.|...
T Consensus 62 ~~v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~~f---~~~~~~~v~r~----~N~~Ad~LA~~a~~~ 127 (128)
T PRK13907 62 NIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSF---DLFFIKWIPSS----QNKVADELARKAILQ 127 (128)
T ss_pred CEEEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHhcC---CceEEEEcCch----hchhHHHHHHHHHhc
Confidence 36899999999999998865322 3344455555443 57788999984 999999999999754
No 9
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=97.43 E-value=0.00044 Score=54.38 Aligned_cols=61 Identities=30% Similarity=0.341 Sum_probs=44.2
Q ss_pred ccEEEEcCcHHHHHHHhccC-CCC---hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhh
Q psy17038 4 MLQNSSKDSLSALQSIQNEF-SSN---PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALS 71 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~-~~~---~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~ 71 (399)
.+|.|.|||+.+++.|.+.. ... .+.+.|+.+++.. ..+.|.||| =++|..||.+||.|.+
T Consensus 22 ~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~i~----r~~N~~A~~LA~~a~~ 86 (87)
T PF13456_consen 22 RKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRF---WNVSVSHIP----REQNKVADALAKFALS 86 (87)
T ss_dssp SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCC---SCEEEEE------GGGSHHHHHHHHHHHH
T ss_pred CEEEEEecCccccccccccccccccccccchhhhhhhccc---cceEEEEEC----hHHhHHHHHHHHHHhh
Confidence 57999999999999998875 222 3444555665553 689999999 5689999999999864
No 10
>PRK07708 hypothetical protein; Validated
Probab=96.98 E-value=0.0017 Score=61.66 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=47.2
Q ss_pred cEEEEcCcHHHHHHHhccC-CCChH----HHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhcC
Q psy17038 5 LQNSSKDSLSALQSIQNEF-SSNPI----AQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSN 73 (399)
Q Consensus 5 ~i~I~tDs~sal~al~~~~-~~~~~----~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~~ 73 (399)
.|.|++||+.+++.+..-+ ..++. ...+.++++... ..+.|.|||- ..|+.||+||+.|++..
T Consensus 142 ~V~I~~DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~--l~~~~~~VpR----~~N~~AD~LAk~Al~~~ 209 (219)
T PRK07708 142 PVTFRGDSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLK--LTPVYEPISR----KQNKEADQLATQALEGT 209 (219)
T ss_pred eEEEEeccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCC--ceEEEEECCc----hhhhHHHHHHHHHHhcC
Confidence 3899999999999998865 33333 334555555543 5688899985 56999999999999865
No 11
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=96.69 E-value=0.0037 Score=63.53 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=47.6
Q ss_pred ccEEEEcCcHHHHHHHhccC-CCC-hHH---HHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhcC
Q psy17038 4 MLQNSSKDSLSALQSIQNEF-SSN-PIA---QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSN 73 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~-~~~-~~~---~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~~ 73 (399)
..|.|++||+.+++.+.+.+ ..+ ... ..++++++.. ..|.|.|||. .+|+.||.||+.|....
T Consensus 66 ~~v~i~~DS~lvi~~i~~~~~~~~~~l~~~~~~i~~l~~~f---~~~~i~~v~r----~~N~~AD~LA~~a~~~~ 133 (372)
T PRK07238 66 TEVEVRMDSKLVVEQMSGRWKVKHPDMKPLAAQARELASQF---GRVTYTWIPR----ARNAHADRLANEAMDAA 133 (372)
T ss_pred CeEEEEeCcHHHHHHhCCCCccCChHHHHHHHHHHHHHhcC---CceEEEECCc----hhhhHHHHHHHHHHHhh
Confidence 46899999999999998754 222 222 3344554443 5899999997 68999999999998665
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=90.10 E-value=0.19 Score=40.27 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.8
Q ss_pred ccccCCCCCCcccccccchhhccccCCCCCCcceeeecccc
Q psy17038 152 LERQGDLDLDLCDSWRNLAESQEANDDGDLSSHHVTLDLAN 192 (399)
Q Consensus 152 l~r~~~~~s~~C~cg~~~~ea~~~~~~~~eTv~H~L~~Cp~ 192 (399)
|.+.+...++.|..|. ...||+.|+|+.||.
T Consensus 51 l~~r~~~~~~~C~~C~----------~~~Et~~Hlf~~C~~ 81 (86)
T PF13966_consen 51 LQRRGIQVDPICPLCG----------NEEETIEHLFFHCPF 81 (86)
T ss_pred hhccCCccCCccccCC----------CccccccceeccCcC
Confidence 5555666678888552 127999999999996
Done!