Query psy17038
Match_columns 399
No_of_seqs 341 out of 1284
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:12:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h08_A RNH (ribonuclease H); R 99.3 1.9E-12 6.4E-17 112.9 6.6 66 4-73 63-145 (146)
2 3qio_A GAG-POL polyprotein; RN 99.3 1.2E-12 4E-17 115.4 4.8 70 3-72 65-147 (150)
3 2qkb_A Ribonuclease H1, HS-RNA 99.3 4.4E-12 1.5E-16 111.7 6.1 66 4-73 71-152 (154)
4 1jl1_A Ribonuclease HI; RNAse 99.2 5.1E-12 1.7E-16 111.6 6.0 66 4-73 63-144 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.2 7.3E-12 2.5E-16 111.0 6.3 65 4-72 65-145 (158)
6 3p1g_A Xenotropic murine leuke 99.2 1.2E-11 4.2E-16 110.7 4.6 71 3-73 80-157 (165)
7 1ril_A Ribonuclease H; hydrola 99.2 1.8E-11 6.1E-16 109.5 5.1 66 4-73 67-149 (166)
8 2lsn_A Reverse transcriptase; 99.1 3.2E-11 1.1E-15 108.0 5.6 67 3-72 75-163 (165)
9 2kq2_A Ribonuclease H-related 99.0 6.8E-11 2.3E-15 103.6 0.1 67 5-73 71-138 (147)
10 1mu2_A HIV-2 RT; HIV-2 reverse 98.9 1E-09 3.6E-14 115.2 7.3 65 3-70 489-555 (555)
11 2zd1_A Reverse transcriptase/r 98.9 1.6E-09 5.4E-14 113.9 5.9 64 3-69 492-557 (557)
12 3u3g_D Ribonuclease H, RNAse H 98.6 3.3E-08 1.1E-12 84.1 6.3 62 4-72 70-137 (140)
13 3hst_B Protein RV2228C/MT2287; 98.6 1.1E-07 3.7E-12 81.3 7.3 66 4-73 67-134 (141)
14 2ehg_A Ribonuclease HI; RNAse 98.5 1.7E-07 5.7E-12 81.4 6.9 62 4-73 69-135 (149)
15 1zbf_A Ribonuclease H-related 92.7 0.018 6.1E-07 49.8 -0.4 58 5-63 72-138 (142)
16 4htu_A Ribonuclease H, RNAse H 56.2 7.5 0.00026 32.9 3.1 20 4-23 65-84 (134)
No 1
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.31 E-value=1.9e-12 Score=112.89 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=52.7
Q ss_pred ccEEEEcCcHHHHHHHhc-cC----------------CCChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHH
Q psy17038 4 MLQNSSKDSLSALQSIQN-EF----------------SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~-~~----------------~~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~A 66 (399)
..|.|+|||++++++|.. |. ...++.+.|.++++. ..|.|.|||||+|++|||.||+||
T Consensus 63 ~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~----~~v~~~~V~gH~g~~~N~~AD~LA 138 (146)
T 3h08_A 63 ARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL----HRVTFHKVKGHSDNPYNSRADELA 138 (146)
T ss_dssp CEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH----SEEEEEECCC-CCSHHHHHHHHHH
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh----CceEEEEcCCcCCcHhHHHHHHHH
Confidence 579999999999999988 31 113456666666654 469999999999999999999999
Q ss_pred HHHhhcC
Q psy17038 67 KEALSSN 73 (399)
Q Consensus 67 k~a~~~~ 73 (399)
++|+...
T Consensus 139 ~~a~~~~ 145 (146)
T 3h08_A 139 RLAIKEN 145 (146)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9998753
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.30 E-value=1.2e-12 Score=115.44 Aligned_cols=70 Identities=27% Similarity=0.418 Sum_probs=50.6
Q ss_pred cccEEEEcCcHHHHHHHhccC-----------CCChHH--HHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHH
Q psy17038 3 TMLQNSSKDSLSALQSIQNEF-----------SSNPIA--QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~-----------~~~~~~--~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a 69 (399)
+..|.|+|||++++++|..|. ...++. ..++++++...+...|.|.|||||+|++|||.||+||++|
T Consensus 65 ~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 144 (150)
T 3qio_A 65 GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144 (150)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence 467999999999999998862 111111 1233333322223789999999999999999999999999
Q ss_pred hhc
Q psy17038 70 LSS 72 (399)
Q Consensus 70 ~~~ 72 (399)
+..
T Consensus 145 ~~~ 147 (150)
T 3qio_A 145 IRK 147 (150)
T ss_dssp TSC
T ss_pred HHH
Confidence 865
No 3
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.26 E-value=4.4e-12 Score=111.69 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=52.6
Q ss_pred ccEEEEcCcHHHHHHHhccC---------C-------CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHH
Q psy17038 4 MLQNSSKDSLSALQSIQNEF---------S-------SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~---------~-------~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak 67 (399)
..|.|+|||++++++|..|. . ..++++.|.+++.. ..|.|.|||||+|++|||.||+||+
T Consensus 71 ~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~----~~v~~~~V~~H~g~~~N~~AD~LA~ 146 (154)
T 2qkb_A 71 NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG----MDIQWMHVPGHSGFIGNEEADRLAR 146 (154)
T ss_dssp CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTT----CEEEEEECCTTSSCHHHHHHHHHHH
T ss_pred ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcC----CceEEEEccCCCCCHhHHHHHHHHH
Confidence 57999999999999998741 1 12345555555442 5799999999999999999999999
Q ss_pred HHhhcC
Q psy17038 68 EALSSN 73 (399)
Q Consensus 68 ~a~~~~ 73 (399)
+|+..+
T Consensus 147 ~a~~~~ 152 (154)
T 2qkb_A 147 EGAKQS 152 (154)
T ss_dssp HHHTCC
T ss_pred HHHHhc
Confidence 998764
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.25 E-value=5.1e-12 Score=111.60 Aligned_cols=66 Identities=26% Similarity=0.272 Sum_probs=52.2
Q ss_pred ccEEEEcCcHHHHHHHhccC---------C-------CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHH
Q psy17038 4 MLQNSSKDSLSALQSIQNEF---------S-------SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~---------~-------~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak 67 (399)
..|.|+|||++++++|..|. . ..++.+.|.++++ ...|.|.|||||+|++||+.||+||+
T Consensus 63 ~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~----~~~v~~~wV~gH~g~~~Ne~AD~LA~ 138 (155)
T 1jl1_A 63 AEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG----QHQIKWEWVKGHAGHPENERADELAR 138 (155)
T ss_dssp CEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT----TCEEEEEECCSSTTCHHHHHHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc----cCceEEEEcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999731 1 1234444444433 26899999999999999999999999
Q ss_pred HHhhcC
Q psy17038 68 EALSSN 73 (399)
Q Consensus 68 ~a~~~~ 73 (399)
.|+..+
T Consensus 139 ~a~~~~ 144 (155)
T 1jl1_A 139 AAAMNP 144 (155)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 999876
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.23 E-value=7.3e-12 Score=111.01 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=52.5
Q ss_pred ccEEEEcCcHHHHHHHhcc--------C-C-------CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHH
Q psy17038 4 MLQNSSKDSLSALQSIQNE--------F-S-------SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAK 67 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~--------~-~-------~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak 67 (399)
..|.|+|||++++++|..| + . ..++.+.|.++++. ..|.|.|||||+|++||+.||+||+
T Consensus 65 ~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~----~~v~~~wV~gH~g~~~Ne~AD~LAk 140 (158)
T 2e4l_A 65 CKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL----HQIDWRWVKGHAGHAENERCDQLAR 140 (158)
T ss_dssp CEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT----SEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc----CcEEEEEccCCCCchhHHHHHHHHH
Confidence 5799999999999999882 1 1 11444555555542 5899999999999999999999999
Q ss_pred HHhhc
Q psy17038 68 EALSS 72 (399)
Q Consensus 68 ~a~~~ 72 (399)
.|+..
T Consensus 141 ~a~~~ 145 (158)
T 2e4l_A 141 AAAEA 145 (158)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 99987
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.17 E-value=1.2e-11 Score=110.68 Aligned_cols=71 Identities=24% Similarity=0.170 Sum_probs=52.9
Q ss_pred cccEEEEcCcHHHHHHHhccCCCChH--HHHHHHHHHhcCCCccEEEEEeccCCC-----CCCChhhhHHHHHHhhcC
Q psy17038 3 TMLQNSSKDSLSALQSIQNEFSSNPI--AQEIRNILVKNKHILSLHFTWVPSHVG-----IVGNEESDRLAKEALSSN 73 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~~~~~~--~~~i~~l~~~~~~~~~V~~~WvpgH~g-----i~gNe~AD~~Ak~a~~~~ 73 (399)
...|.|||||++++++|-.....+++ ...|++++........|.|.|||||+| ++|||.||+||++|+..+
T Consensus 80 ~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 80 GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 35799999999999999211112222 122555554433347999999999999 999999999999999876
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.16 E-value=1.8e-11 Score=109.45 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=53.1
Q ss_pred ccEEEEcCcHHHHHHHhc----------cCC-------CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHH
Q psy17038 4 MLQNSSKDSLSALQSIQN----------EFS-------SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~----------~~~-------~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~A 66 (399)
..|.|+|||++++++|.. |.. ..++.+.|.+++.. ..|.|.|||||+|++||+.||+||
T Consensus 67 ~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~----~~v~~~wV~gH~g~~~Ne~AD~LA 142 (166)
T 1ril_A 67 CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP----HRVRFHFVKGHTGHPENERVDREA 142 (166)
T ss_dssp CEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT----SEEECCCCCGGGSCTHHHHHHHHH
T ss_pred CeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc----CeEEEEEeeCCCCchhHHHHHHHH
Confidence 479999999999999998 221 12345555555442 589999999999999999999999
Q ss_pred HHHhhcC
Q psy17038 67 KEALSSN 73 (399)
Q Consensus 67 k~a~~~~ 73 (399)
++|+...
T Consensus 143 k~a~~~~ 149 (166)
T 1ril_A 143 RRQAQSQ 149 (166)
T ss_dssp HHHHTSS
T ss_pred HHHHHHh
Confidence 9999876
No 8
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.14 E-value=3.2e-11 Score=107.97 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=51.0
Q ss_pred cccEEEEcCcHHHHHHHhccC-----------C-----CChHHHHHHHHHHhcCCCccEEEEEeccCCCC------CCCh
Q psy17038 3 TMLQNSSKDSLSALQSIQNEF-----------S-----SNPIAQEIRNILVKNKHILSLHFTWVPSHVGI------VGNE 60 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~-----------~-----~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi------~gNe 60 (399)
+..|.|+|||+|++++|..|. . ..++.+.+.+++... ..|.|.|||||+|+ +|||
T Consensus 75 ~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~---~~v~~~~VkgH~g~~~~~~~~gNe 151 (165)
T 2lsn_A 75 PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMK---PDITIQHEKGHQPTNTSIHTEGNA 151 (165)
T ss_dssp SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHC---TTCEEEECCSSSCSSSCHHHHHHH
T ss_pred CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCC---CCEEEEEEeCCCCccCCCCChHHH
Confidence 346999999999999997642 1 124455555555443 68999999999995 5799
Q ss_pred hhhHHHHHHhhc
Q psy17038 61 ESDRLAKEALSS 72 (399)
Q Consensus 61 ~AD~~Ak~a~~~ 72 (399)
+||+||++|+..
T Consensus 152 ~AD~LA~~gA~~ 163 (165)
T 2lsn_A 152 LADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999999999853
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.96 E-value=6.8e-11 Score=103.58 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=51.6
Q ss_pred cEEEEcCcHHHHHHHhccC-CCChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhcC
Q psy17038 5 LQNSSKDSLSALQSIQNEF-SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSN 73 (399)
Q Consensus 5 ~i~I~tDs~sal~al~~~~-~~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~~ 73 (399)
.|.|+|||+.+..-+.+.+ .+......+.++++... ..|.|.|||||+|++|||.||+||++|+...
T Consensus 71 ~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~--~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 71 KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYR--GIYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGS--TTCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhc--CCeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 6899999998877666544 22333344455555443 3899999999999999999999999999876
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.92 E-value=1e-09 Score=115.24 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=54.4
Q ss_pred cccEEEEcCcHHHHHHHhccC--CCChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHh
Q psy17038 3 TMLQNSSKDSLSALQSIQNEF--SSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~--~~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~ 70 (399)
...|.|+|||++|+++|..|. ..+++.+.+.+++... ..|.|.|||||+|++|||.||+||++|+
T Consensus 489 ~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~~---~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 489 GPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIKK---EAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHHC---SEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred CCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhccC---CcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 357999999999999999876 4457777666555443 6899999999999999999999999874
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.85 E-value=1.6e-09 Score=113.89 Aligned_cols=64 Identities=33% Similarity=0.481 Sum_probs=50.8
Q ss_pred cccEEEEcCcHHHHHHHhccCC--CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHH
Q psy17038 3 TMLQNSSKDSLSALQSIQNEFS--SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69 (399)
Q Consensus 3 ~~~i~I~tDs~sal~al~~~~~--~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a 69 (399)
...|.|+|||++|+++|..|.. .+++.+.+.+.+... ..|.|.|||||+|++|||.||+||++|
T Consensus 492 ~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~---~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 492 GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKK---EKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHC---SEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcC---CCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 3579999999999999999863 356776665444443 589999999999999999999999976
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.64 E-value=3.3e-08 Score=84.11 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=48.1
Q ss_pred ccEEEEcCcHHHHHHHhccCC-CC-hH---HHHHHHH-HHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhc
Q psy17038 4 MLQNSSKDSLSALQSIQNEFS-SN-PI---AQEIRNI-LVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSS 72 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~~-~~-~~---~~~i~~l-~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~ 72 (399)
..|.|+|||+++++.|..++. .+ .+ .+.|.++ +... ..|.|.|||+ ++|+.||+||+.|+..
T Consensus 70 ~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~---~~v~~~~V~~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 70 MEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERV---PNLVFVHIPR----EKNARADELVNEAIDK 137 (140)
T ss_dssp CEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHC---TTCEEEECCG----GGGHHHHHHHHHHHHH
T ss_pred ceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCC---CcEEEEEcCc----hhhHHHHHHHHHHHHh
Confidence 389999999999999998662 22 33 3445555 5443 5899999994 8999999999999864
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.1e-07 Score=81.31 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=48.0
Q ss_pred ccEEEEcCcHHHHHHHhccC-CCCh-HHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhcC
Q psy17038 4 MLQNSSKDSLSALQSIQNEF-SSNP-IAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSN 73 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~-~~~~-~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~~ 73 (399)
..|.|+|||+++++.|...+ ..+. +...+.++.........|.|.|||+ ++|+.||+||+.|+...
T Consensus 67 ~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 67 TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 57999999999999998854 3333 3333333322222226899999996 79999999999998764
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.50 E-value=1.7e-07 Score=81.41 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=49.2
Q ss_pred ccEEEEcCcHHHHHHHhccCC-CC----hHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhhHHHHHHhhcC
Q psy17038 4 MLQNSSKDSLSALQSIQNEFS-SN----PIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEALSSN 73 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~~-~~----~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD~~Ak~a~~~~ 73 (399)
..|.|+|||+++++.|..++. .+ .+.+.|.++++.. .|.|.|||+| +|+.||+||+.|+...
T Consensus 69 ~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~----~v~~~~V~~~----~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 69 SSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL----NATLIWVPRE----ENKEADRLSRVAYELV 135 (149)
T ss_dssp CSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH----TCEEEECCGG----GCHHHHHHHHHHHHHH
T ss_pred CEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC----CEEEEEcCCc----ccHHHHHHHHHHHHhh
Confidence 568999999999999999752 22 3444555565543 5999999994 9999999999998765
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=92.73 E-value=0.018 Score=49.76 Aligned_cols=58 Identities=9% Similarity=0.006 Sum_probs=41.4
Q ss_pred cEEEEcCcHHHHHHHhccCC---------CChHHHHHHHHHHhcCCCccEEEEEeccCCCCCCChhhh
Q psy17038 5 LQNSSKDSLSALQSIQNEFS---------SNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESD 63 (399)
Q Consensus 5 ~i~I~tDs~sal~al~~~~~---------~~~~~~~i~~l~~~~~~~~~V~~~WvpgH~gi~gNe~AD 63 (399)
.|.|+|||+++++.+.+.+. ..++.+.+.++..-.. .+.++...|..|++..||..||
T Consensus 72 ~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~-~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 72 RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN-THTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH-HCCCCCCEEECCHHHHCSCTTC
T ss_pred eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh-hCCCceeEEEeccCccCcCccc
Confidence 68999999999999988651 1245555544422111 1567788888899999999998
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=56.16 E-value=7.5 Score=32.91 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=16.9
Q ss_pred ccEEEEcCcHHHHHHHhccC
Q psy17038 4 MLQNSSKDSLSALQSIQNEF 23 (399)
Q Consensus 4 ~~i~I~tDs~sal~al~~~~ 23 (399)
..+.|+|||++|++-|.++.
T Consensus 65 ~~v~i~tDSqyVi~wi~~~~ 84 (134)
T 4htu_A 65 SRKPIYSNSQTAIKWVKDKK 84 (134)
T ss_dssp CCCCEEESCHHHHHHHHHTC
T ss_pred CCEEEEcchHHHHHHHHcCC
Confidence 35899999999999998753
Done!