RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17038
         (399 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 11  DSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEAL 70
           DS   +  + ++ +    ++ +  I+ +     +++  WVP+H GI GN+E D L  + +
Sbjct: 68  DSQYVMGIVASQPT-ESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 46  HFTWVPSHVGIVGNEESDRLAKEALSSNSPS 76
            F +V  H G   NE  DR A+    S + +
Sbjct: 117 RFHFVKGHTGHPENERVDREARRQAQSQAKT 147


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 30  QEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLAKEA 69
            ++   L        + + WV  H G   NE +D LA+ A
Sbjct: 99  VDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAA 138


>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
           antarctica), form b [TaxId: 34362]}
          Length = 317

 Score = 32.4 bits (73), Expect = 0.089
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 7   NSSKDSLSALQSIQNEFSSNPIAQEIRNILVKNKHILSLHFTWVPSHVGIVGNEESDRLA 66
            S+ D +   Q   +   S+ +    +N+  +          +V  H G + ++ S  + 
Sbjct: 183 YSATDEIVQPQVSNSPLDSSYLFN-GKNVQAQA----VCGPLFVIDHAGSLTSQFSYVVG 237

Query: 67  KEALSSNSPSVNTIPINY 84
           + AL S +    +     
Sbjct: 238 RSALRSTTGQARSADYGI 255


>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 1
           [TaxId: 11676]}
          Length = 110

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 11  DSLSALQSIQNEF--SSNPIAQEIRNILVKNKHILSLHFTWVPSH 53
           DS  AL  IQ +   S + +  +I   L+K + +   +  WVP+H
Sbjct: 69  DSQYALGIIQAQPDQSESELVNQIIEQLIKKEKV---YLAWVPAH 110


>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB
           {Streptomyces coelicolor [TaxId: 1902]}
          Length = 133

 Score = 25.7 bits (56), Expect = 6.6
 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 164 DSWRNLAES--QEANDDGDLSSHHVTLDLANRIVQSYTGIQA 203
             WR +A S   +A    D+        +A+ +V S  G + 
Sbjct: 46  TEWREIATSRLLDAVRQSDVHQDIDVDSVAHTLVCSVVGTRV 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,445,145
Number of extensions: 67132
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 11
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)