Query psy1704
Match_columns 90
No_of_seqs 142 out of 1497
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:15:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01266 DAO: FAD dependent ox 99.0 6.4E-10 1.4E-14 77.2 6.4 48 29-78 1-48 (358)
2 TIGR01373 soxB sarcosine oxida 99.0 1.1E-09 2.4E-14 78.8 7.8 59 21-80 24-83 (407)
3 TIGR03364 HpnW_proposed FAD de 98.9 2.4E-09 5.1E-14 75.9 6.3 49 28-78 1-49 (365)
4 PRK12409 D-amino acid dehydrog 98.9 4.2E-09 9.1E-14 75.8 6.2 49 28-78 2-51 (410)
5 TIGR03329 Phn_aa_oxid putative 98.9 3.7E-09 8.1E-14 77.7 5.9 52 26-77 23-74 (460)
6 PRK11728 hydroxyglutarate oxid 98.9 5.4E-09 1.2E-13 75.2 6.3 51 28-78 3-54 (393)
7 PRK11101 glpA sn-glycerol-3-ph 98.9 7.2E-09 1.6E-13 77.9 6.5 51 27-79 6-56 (546)
8 COG0665 DadA Glycine/D-amino a 98.8 6.5E-09 1.4E-13 73.7 5.8 50 26-77 3-52 (387)
9 PRK01747 mnmC bifunctional tRN 98.8 1.3E-08 2.8E-13 77.9 7.3 50 28-79 261-311 (662)
10 PRK13369 glycerol-3-phosphate 98.8 5.9E-09 1.3E-13 77.5 5.2 51 25-77 4-54 (502)
11 COG1635 THI4 Ribulose 1,5-bisp 98.8 9.1E-10 2E-14 75.1 0.6 48 27-76 30-77 (262)
12 PRK00711 D-amino acid dehydrog 98.8 8.9E-09 1.9E-13 74.0 5.1 49 29-79 2-51 (416)
13 PRK12266 glpD glycerol-3-phosp 98.8 1.7E-08 3.7E-13 75.3 6.2 50 26-77 5-54 (508)
14 PRK11259 solA N-methyltryptoph 98.7 3.2E-08 6.8E-13 70.2 6.6 49 27-77 3-53 (376)
15 COG0644 FixC Dehydrogenases (f 98.7 2.7E-08 5.9E-13 71.9 5.9 49 26-77 2-50 (396)
16 PF13450 NAD_binding_8: NAD(P) 98.7 2.2E-08 4.8E-13 56.3 4.3 32 32-65 1-32 (68)
17 PLN02661 Putative thiazole syn 98.7 1.8E-08 3.9E-13 72.6 4.4 64 7-71 72-135 (357)
18 TIGR01377 soxA_mon sarcosine o 98.7 5.9E-08 1.3E-12 68.9 6.7 48 28-77 1-50 (380)
19 PRK10157 putative oxidoreducta 98.7 5.5E-08 1.2E-12 71.1 6.4 37 27-65 5-41 (428)
20 PF01946 Thi4: Thi4 family; PD 98.7 2.2E-08 4.8E-13 68.1 3.9 42 26-69 16-57 (230)
21 PRK10015 oxidoreductase; Provi 98.7 6.9E-08 1.5E-12 70.7 6.6 38 27-66 5-42 (429)
22 PRK07804 L-aspartate oxidase; 98.7 3.7E-08 8.1E-13 74.0 5.3 51 25-77 14-64 (541)
23 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 5.5E-08 1.2E-12 70.1 5.9 35 27-63 2-36 (390)
24 TIGR00292 thiazole biosynthesi 98.7 7.2E-08 1.6E-12 66.6 6.1 42 26-69 20-61 (254)
25 PF01494 FAD_binding_3: FAD bi 98.7 7.5E-08 1.6E-12 66.7 6.2 36 28-65 2-37 (356)
26 COG0579 Predicted dehydrogenas 98.7 8.1E-08 1.7E-12 70.8 6.5 54 26-79 2-56 (429)
27 COG1233 Phytoene dehydrogenase 98.6 4.8E-08 1E-12 72.6 5.3 38 27-66 3-40 (487)
28 PRK09126 hypothetical protein; 98.6 7E-08 1.5E-12 68.9 5.9 36 27-64 3-38 (392)
29 PRK07364 2-octaprenyl-6-methox 98.6 9E-08 1.9E-12 68.8 6.5 37 26-64 17-53 (415)
30 TIGR01813 flavo_cyto_c flavocy 98.6 7.3E-08 1.6E-12 70.2 5.9 47 29-77 1-48 (439)
31 PRK08243 4-hydroxybenzoate 3-m 98.6 7.9E-08 1.7E-12 69.1 6.0 35 27-63 2-36 (392)
32 PRK08641 sdhA succinate dehydr 98.6 5.4E-08 1.2E-12 73.9 5.1 49 27-77 3-51 (589)
33 PLN02464 glycerol-3-phosphate 98.6 6.5E-08 1.4E-12 74.0 5.5 50 26-77 70-119 (627)
34 PRK08274 tricarballylate dehyd 98.6 1.1E-07 2.3E-12 69.9 6.5 47 26-74 3-51 (466)
35 PRK04176 ribulose-1,5-biphosph 98.6 1E-07 2.2E-12 65.8 5.9 39 26-66 24-62 (257)
36 PF00890 FAD_binding_2: FAD bi 98.6 6.2E-08 1.3E-12 69.9 5.0 47 29-77 1-47 (417)
37 PRK07121 hypothetical protein; 98.6 1.2E-07 2.5E-12 70.4 6.4 49 26-76 19-67 (492)
38 PRK06481 fumarate reductase fl 98.6 1.6E-07 3.4E-12 70.1 7.1 46 26-73 60-105 (506)
39 PRK07494 2-octaprenyl-6-methox 98.6 9.4E-08 2E-12 68.3 5.7 37 25-63 5-41 (388)
40 PRK08773 2-octaprenyl-3-methyl 98.6 8.8E-08 1.9E-12 68.7 5.5 38 25-64 4-41 (392)
41 PRK08163 salicylate hydroxylas 98.6 9.6E-08 2.1E-12 68.3 5.5 37 26-64 3-39 (396)
42 TIGR02032 GG-red-SF geranylger 98.6 1E-07 2.2E-12 65.0 5.3 35 28-64 1-35 (295)
43 PRK07208 hypothetical protein; 98.6 1.1E-07 2.4E-12 69.8 5.8 39 26-66 3-41 (479)
44 PLN00093 geranylgeranyl diphos 98.6 1.6E-07 3.4E-12 69.4 6.4 39 22-62 34-72 (450)
45 TIGR00551 nadB L-aspartate oxi 98.6 8E-08 1.7E-12 71.3 4.9 48 27-77 2-49 (488)
46 PRK07045 putative monooxygenas 98.6 1E-07 2.3E-12 68.2 5.3 37 26-64 4-40 (388)
47 PRK05257 malate:quinone oxidor 98.6 1.1E-07 2.4E-12 71.0 5.5 38 26-63 4-41 (494)
48 TIGR01320 mal_quin_oxido malat 98.6 1E-07 2.3E-12 70.9 5.2 50 28-77 1-53 (483)
49 PLN02172 flavin-containing mon 98.6 1.7E-07 3.7E-12 69.5 6.1 36 26-63 9-44 (461)
50 PRK07803 sdhA succinate dehydr 98.6 1.7E-07 3.6E-12 71.7 6.1 49 26-76 7-55 (626)
51 PRK11883 protoporphyrinogen ox 98.6 1.3E-07 2.7E-12 68.5 5.2 35 29-65 2-38 (451)
52 PRK07236 hypothetical protein; 98.6 1.7E-07 3.6E-12 67.2 5.8 36 26-63 5-40 (386)
53 PRK07608 ubiquinone biosynthes 98.5 1.5E-07 3.2E-12 67.1 5.3 36 27-64 5-40 (388)
54 PTZ00139 Succinate dehydrogena 98.5 1.8E-07 4E-12 71.4 6.1 50 26-77 28-77 (617)
55 TIGR01988 Ubi-OHases Ubiquinon 98.5 1.2E-07 2.6E-12 67.1 4.8 34 29-64 1-34 (385)
56 PRK07233 hypothetical protein; 98.5 1.5E-07 3.2E-12 67.6 5.3 36 29-66 1-36 (434)
57 PRK08013 oxidoreductase; Provi 98.5 1.5E-07 3.2E-12 67.9 5.2 35 27-63 3-37 (400)
58 PRK06185 hypothetical protein; 98.5 1.6E-07 3.4E-12 67.5 5.3 36 25-62 4-39 (407)
59 PLN02576 protoporphyrinogen ox 98.5 2.4E-07 5.3E-12 68.3 6.4 39 25-65 10-49 (496)
60 PRK07057 sdhA succinate dehydr 98.5 1.9E-07 4.2E-12 70.9 6.0 50 25-76 10-59 (591)
61 PRK09077 L-aspartate oxidase; 98.5 1.5E-07 3.2E-12 70.7 5.3 49 26-77 7-55 (536)
62 PRK07395 L-aspartate oxidase; 98.5 1.2E-07 2.7E-12 71.5 4.8 49 25-76 7-55 (553)
63 PRK06452 sdhA succinate dehydr 98.5 1.6E-07 3.5E-12 71.0 5.4 49 26-76 4-52 (566)
64 PRK06184 hypothetical protein; 98.5 2.1E-07 4.5E-12 69.1 5.8 36 27-64 3-38 (502)
65 PRK08244 hypothetical protein; 98.5 2E-07 4.3E-12 69.0 5.7 36 27-64 2-37 (493)
66 PRK08849 2-octaprenyl-3-methyl 98.5 1.8E-07 3.8E-12 67.1 5.3 33 28-62 4-36 (384)
67 PRK06069 sdhA succinate dehydr 98.5 1.9E-07 4.1E-12 70.6 5.5 48 26-75 4-54 (577)
68 PRK05714 2-octaprenyl-3-methyl 98.5 1.5E-07 3.3E-12 67.7 4.8 34 27-62 2-35 (405)
69 PRK06847 hypothetical protein; 98.5 2.3E-07 5E-12 65.9 5.6 35 27-63 4-38 (375)
70 PRK06126 hypothetical protein; 98.5 3.3E-07 7.2E-12 68.5 6.6 36 26-63 6-41 (545)
71 PRK09231 fumarate reductase fl 98.5 1.2E-07 2.7E-12 71.9 4.3 51 27-77 4-54 (582)
72 PLN02268 probable polyamine ox 98.5 1.9E-07 4.2E-12 67.8 5.2 37 28-66 1-37 (435)
73 TIGR02733 desat_CrtD C-3',4' d 98.5 2.2E-07 4.8E-12 68.6 5.5 37 28-66 2-38 (492)
74 COG0654 UbiH 2-polyprenyl-6-me 98.5 2.6E-07 5.6E-12 66.6 5.7 33 27-61 2-34 (387)
75 PLN02815 L-aspartate oxidase 98.5 1.3E-07 2.9E-12 72.0 4.4 49 26-77 28-76 (594)
76 PRK06753 hypothetical protein; 98.5 2E-07 4.3E-12 66.2 5.0 34 29-64 2-35 (373)
77 TIGR02023 BchP-ChlP geranylger 98.5 2.6E-07 5.7E-12 66.4 5.6 32 28-61 1-32 (388)
78 TIGR01176 fum_red_Fp fumarate 98.5 1.4E-07 3E-12 71.6 4.3 51 27-77 3-53 (580)
79 PRK12834 putative FAD-binding 98.5 3E-07 6.4E-12 69.2 6.0 46 26-73 3-50 (549)
80 PRK06370 mercuric reductase; V 98.5 3.1E-07 6.6E-12 67.5 5.9 36 26-63 4-39 (463)
81 PRK08071 L-aspartate oxidase; 98.5 1.7E-07 3.7E-12 70.0 4.6 48 27-77 3-50 (510)
82 KOG1399|consensus 98.5 3.8E-07 8.2E-12 67.6 6.4 44 26-78 5-48 (448)
83 PRK08020 ubiF 2-octaprenyl-3-m 98.5 2.1E-07 4.6E-12 66.5 4.9 35 26-62 4-38 (391)
84 PRK07333 2-octaprenyl-6-methox 98.5 3E-07 6.5E-12 65.8 5.7 36 28-63 2-37 (403)
85 TIGR01984 UbiH 2-polyprenyl-6- 98.5 2E-07 4.4E-12 66.3 4.7 34 29-64 1-35 (382)
86 PRK13339 malate:quinone oxidor 98.5 3.3E-07 7.1E-12 68.7 5.9 45 26-70 5-50 (497)
87 TIGR00562 proto_IX_ox protopor 98.5 2.5E-07 5.5E-12 67.4 5.2 38 28-65 3-42 (462)
88 KOG0029|consensus 98.5 3E-07 6.4E-12 69.0 5.6 38 25-64 13-50 (501)
89 PRK05732 2-octaprenyl-6-methox 98.5 2.2E-07 4.8E-12 66.2 4.7 34 26-61 2-38 (395)
90 PRK07190 hypothetical protein; 98.5 3.2E-07 7E-12 68.3 5.7 37 26-64 4-40 (487)
91 PF03486 HI0933_like: HI0933-l 98.5 2.3E-07 4.9E-12 68.0 4.8 35 28-64 1-35 (409)
92 TIGR02730 carot_isom carotene 98.5 2.8E-07 6.1E-12 68.3 5.3 37 28-66 1-37 (493)
93 COG2081 Predicted flavoprotein 98.5 2.1E-07 4.6E-12 67.8 4.5 39 26-66 2-40 (408)
94 PRK08850 2-octaprenyl-6-methox 98.5 2.7E-07 5.8E-12 66.6 5.0 33 27-61 4-36 (405)
95 PRK05249 soluble pyridine nucl 98.5 3.8E-07 8.2E-12 66.8 5.8 37 26-64 4-40 (461)
96 PRK06475 salicylate hydroxylas 98.5 3.9E-07 8.6E-12 65.7 5.8 34 28-63 3-36 (400)
97 PRK12779 putative bifunctional 98.5 3E-07 6.4E-12 73.2 5.6 35 26-62 305-339 (944)
98 PRK12842 putative succinate de 98.5 4.5E-07 9.7E-12 68.6 6.3 48 26-75 8-55 (574)
99 PRK06834 hypothetical protein; 98.5 4.7E-07 1E-11 67.4 6.2 37 26-64 2-38 (488)
100 TIGR01812 sdhA_frdA_Gneg succi 98.5 3.6E-07 7.7E-12 68.8 5.6 44 29-74 1-44 (566)
101 PRK12837 3-ketosteroid-delta-1 98.5 4.6E-07 9.9E-12 67.7 6.0 49 26-77 6-56 (513)
102 KOG3923|consensus 98.4 2.9E-07 6.4E-12 65.2 4.6 55 27-81 3-62 (342)
103 PRK05945 sdhA succinate dehydr 98.4 4E-07 8.6E-12 68.9 5.6 50 27-76 3-53 (575)
104 PRK09078 sdhA succinate dehydr 98.4 3.6E-07 7.8E-12 69.5 5.3 50 26-77 11-60 (598)
105 PRK06263 sdhA succinate dehydr 98.4 3E-07 6.5E-12 69.1 4.8 48 26-76 6-54 (543)
106 COG1232 HemY Protoporphyrinoge 98.4 4E-07 8.6E-12 67.4 5.4 35 29-63 2-36 (444)
107 PRK07843 3-ketosteroid-delta-1 98.4 6.4E-07 1.4E-11 67.6 6.6 50 26-77 6-56 (557)
108 PLN00128 Succinate dehydrogena 98.4 3.4E-07 7.4E-12 70.2 5.1 50 26-77 49-98 (635)
109 TIGR02734 crtI_fam phytoene de 98.4 3.2E-07 6.9E-12 67.9 4.6 35 30-66 1-35 (502)
110 PTZ00383 malate:quinone oxidor 98.4 5.7E-07 1.2E-11 67.3 5.8 37 26-62 44-80 (497)
111 PRK12835 3-ketosteroid-delta-1 98.4 4.8E-07 1E-11 68.7 5.5 48 25-74 9-56 (584)
112 PRK08626 fumarate reductase fl 98.4 2.8E-07 6.1E-12 70.9 4.1 49 26-76 4-52 (657)
113 PRK08010 pyridine nucleotide-d 98.4 5.2E-07 1.1E-11 65.9 5.3 34 27-62 3-36 (441)
114 PRK08205 sdhA succinate dehydr 98.4 4.7E-07 1E-11 68.6 5.2 48 26-76 4-51 (583)
115 PRK05868 hypothetical protein; 98.4 5.8E-07 1.3E-11 64.5 5.4 35 28-64 2-36 (372)
116 PRK08958 sdhA succinate dehydr 98.4 3.6E-07 7.8E-12 69.4 4.5 48 27-76 7-54 (588)
117 PRK06617 2-octaprenyl-6-methox 98.4 9.1E-07 2E-11 63.3 6.2 33 28-62 2-34 (374)
118 PRK07588 hypothetical protein; 98.4 5.4E-07 1.2E-11 64.6 5.0 33 29-63 2-34 (391)
119 PRK07538 hypothetical protein; 98.4 5.5E-07 1.2E-11 65.2 5.1 33 29-63 2-34 (413)
120 PRK08401 L-aspartate oxidase; 98.4 4.2E-07 9.1E-12 67.2 4.3 46 28-76 2-47 (466)
121 PRK11445 putative oxidoreducta 98.4 7.6E-07 1.6E-11 63.4 5.4 33 28-63 2-34 (351)
122 PRK07818 dihydrolipoamide dehy 98.4 9.2E-07 2E-11 65.1 6.0 34 27-62 4-37 (466)
123 PRK12839 hypothetical protein; 98.4 1.3E-06 2.8E-11 66.3 6.8 51 25-77 6-57 (572)
124 PRK06116 glutathione reductase 98.4 7.4E-07 1.6E-11 65.3 5.3 33 27-61 4-36 (450)
125 PRK08294 phenol 2-monooxygenas 98.4 1.2E-06 2.7E-11 67.1 6.7 37 25-63 30-67 (634)
126 PF13738 Pyr_redox_3: Pyridine 98.4 7.2E-07 1.6E-11 58.2 4.7 34 31-66 1-35 (203)
127 COG3380 Predicted NAD/FAD-depe 98.4 6.9E-07 1.5E-11 62.8 4.8 32 29-62 3-34 (331)
128 KOG2614|consensus 98.4 8.7E-07 1.9E-11 64.9 5.4 38 28-67 3-40 (420)
129 TIGR02731 phytoene_desat phyto 98.4 8.6E-07 1.9E-11 64.8 5.4 36 29-66 1-36 (453)
130 PF00743 FMO-like: Flavin-bind 98.4 8.2E-07 1.8E-11 67.0 5.4 41 28-77 2-42 (531)
131 PF12831 FAD_oxidored: FAD dep 98.4 8E-07 1.7E-11 65.1 5.1 36 29-66 1-36 (428)
132 COG0578 GlpA Glycerol-3-phosph 98.3 1E-06 2.2E-11 66.4 5.7 50 26-77 11-60 (532)
133 PRK08132 FAD-dependent oxidore 98.3 1E-06 2.2E-11 66.1 5.7 36 26-63 22-57 (547)
134 COG2072 TrkA Predicted flavopr 98.3 1.2E-06 2.5E-11 64.8 5.9 40 25-66 6-46 (443)
135 PLN02852 ferredoxin-NADP+ redu 98.3 1.3E-06 2.8E-11 65.5 6.1 39 26-64 25-63 (491)
136 PRK06175 L-aspartate oxidase; 98.3 5.9E-07 1.3E-11 65.9 4.1 48 26-76 3-50 (433)
137 TIGR01421 gluta_reduc_1 glutat 98.3 1.1E-06 2.4E-11 64.7 5.6 34 27-62 2-35 (450)
138 PRK12844 3-ketosteroid-delta-1 98.3 1.2E-06 2.6E-11 66.2 5.9 48 26-75 5-52 (557)
139 PLN02568 polyamine oxidase 98.3 1.2E-06 2.5E-11 66.2 5.8 38 26-65 4-46 (539)
140 TIGR01790 carotene-cycl lycope 98.3 9.9E-07 2.2E-11 63.0 5.1 33 29-63 1-33 (388)
141 PF05834 Lycopene_cycl: Lycope 98.3 1E-06 2.3E-11 63.4 5.2 36 29-64 1-36 (374)
142 PRK06183 mhpA 3-(3-hydroxyphen 98.3 1.2E-06 2.7E-11 65.5 5.7 37 26-64 9-45 (538)
143 TIGR02028 ChlP geranylgeranyl 98.3 9.7E-07 2.1E-11 64.0 5.0 34 28-63 1-34 (398)
144 PRK12416 protoporphyrinogen ox 98.3 1E-06 2.2E-11 64.6 5.1 38 28-65 2-43 (463)
145 PRK12845 3-ketosteroid-delta-1 98.3 2.1E-06 4.6E-11 65.1 6.7 51 24-77 13-64 (564)
146 TIGR01292 TRX_reduct thioredox 98.3 1.2E-06 2.5E-11 60.0 4.9 33 28-62 1-33 (300)
147 PRK07251 pyridine nucleotide-d 98.3 1.1E-06 2.4E-11 64.1 5.0 34 27-62 3-36 (438)
148 PRK07573 sdhA succinate dehydr 98.3 1E-06 2.2E-11 67.7 4.8 47 26-74 34-81 (640)
149 PRK05976 dihydrolipoamide dehy 98.3 1.6E-06 3.5E-11 63.9 5.8 35 26-62 3-37 (472)
150 PF07992 Pyr_redox_2: Pyridine 98.3 1.5E-06 3.2E-11 56.5 4.9 32 29-62 1-32 (201)
151 TIGR03219 salicylate_mono sali 98.3 1.5E-06 3.3E-11 62.8 5.4 33 29-63 2-35 (414)
152 TIGR01424 gluta_reduc_2 glutat 98.3 1.4E-06 3E-11 63.9 5.3 33 27-61 2-34 (446)
153 PRK06115 dihydrolipoamide dehy 98.3 1.5E-06 3.4E-11 64.1 5.5 33 27-61 3-35 (466)
154 PRK07512 L-aspartate oxidase; 98.3 8E-07 1.7E-11 66.5 4.0 48 25-76 7-55 (513)
155 COG1053 SdhA Succinate dehydro 98.3 2E-06 4.4E-11 65.3 6.1 50 26-77 5-54 (562)
156 COG3349 Uncharacterized conser 98.3 1.3E-06 2.9E-11 65.2 5.0 36 28-65 1-36 (485)
157 COG0029 NadB Aspartate oxidase 98.3 8.9E-07 1.9E-11 66.1 4.0 56 29-87 9-64 (518)
158 TIGR03315 Se_ygfK putative sel 98.3 1.5E-06 3.2E-11 69.7 5.4 36 26-63 536-571 (1012)
159 PRK12831 putative oxidoreducta 98.3 2.2E-06 4.7E-11 63.5 6.0 36 25-62 138-173 (464)
160 TIGR03143 AhpF_homolog putativ 98.3 1.8E-06 3.9E-11 65.2 5.7 34 27-62 4-37 (555)
161 PLN02463 lycopene beta cyclase 98.3 1.7E-06 3.8E-11 64.0 5.5 35 26-62 27-61 (447)
162 PRK06467 dihydrolipoamide dehy 98.3 2.1E-06 4.6E-11 63.5 5.9 34 27-62 4-37 (471)
163 PLN02985 squalene monooxygenas 98.3 1.7E-06 3.7E-11 64.9 5.3 35 26-62 42-76 (514)
164 PRK06292 dihydrolipoamide dehy 98.3 2E-06 4.4E-11 63.0 5.5 33 27-61 3-35 (460)
165 TIGR01350 lipoamide_DH dihydro 98.3 2E-06 4.4E-11 63.0 5.4 32 28-61 2-33 (461)
166 PRK14694 putative mercuric red 98.3 2.6E-06 5.7E-11 62.8 6.0 35 26-62 5-39 (468)
167 PRK06996 hypothetical protein; 98.3 2.8E-06 6.1E-11 61.3 6.0 37 25-63 9-49 (398)
168 PLN02927 antheraxanthin epoxid 98.3 1.7E-06 3.6E-11 66.9 5.1 35 26-62 80-114 (668)
169 PTZ00367 squalene epoxidase; P 98.2 1.2E-06 2.6E-11 66.5 4.2 35 26-62 32-66 (567)
170 KOG2820|consensus 98.2 2.2E-06 4.9E-11 61.7 5.2 53 25-79 5-59 (399)
171 PRK06416 dihydrolipoamide dehy 98.2 2.4E-06 5.1E-11 62.7 5.5 34 27-62 4-37 (462)
172 PTZ00306 NADH-dependent fumara 98.2 2.3E-06 5E-11 69.4 5.8 49 26-76 408-457 (1167)
173 PRK12843 putative FAD-binding 98.2 4.2E-06 9.1E-11 63.5 6.9 49 25-75 14-62 (578)
174 TIGR01989 COQ6 Ubiquinone bios 98.2 1.8E-06 3.9E-11 63.1 4.7 35 28-62 1-37 (437)
175 TIGR02053 MerA mercuric reduct 98.2 2.1E-06 4.6E-11 63.1 5.1 33 28-62 1-33 (463)
176 PRK12769 putative oxidoreducta 98.2 3.2E-06 7E-11 64.8 6.2 36 26-63 326-361 (654)
177 PRK06134 putative FAD-binding 98.2 3.7E-06 7.9E-11 63.8 6.4 47 26-74 11-57 (581)
178 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.7E-06 5.8E-11 61.9 5.4 35 28-64 2-36 (377)
179 PRK12775 putative trifunctiona 98.2 2.6E-06 5.7E-11 68.3 5.8 36 26-63 429-464 (1006)
180 PRK06854 adenylylsulfate reduc 98.2 1.7E-06 3.8E-11 66.0 4.5 37 27-65 11-49 (608)
181 PRK05335 tRNA (uracil-5-)-meth 98.2 2.8E-06 6E-11 62.9 5.2 34 28-63 3-36 (436)
182 TIGR02061 aprA adenosine phosp 98.2 2.8E-06 6.1E-11 65.1 5.4 42 29-73 1-46 (614)
183 PRK12778 putative bifunctional 98.2 4.2E-06 9.1E-11 65.1 6.3 35 26-62 430-464 (752)
184 KOG2852|consensus 98.2 6.8E-07 1.5E-11 63.4 1.8 49 27-77 10-64 (380)
185 TIGR01316 gltA glutamate synth 98.2 4.3E-06 9.3E-11 61.6 6.1 36 26-63 132-167 (449)
186 TIGR02732 zeta_caro_desat caro 98.2 3.2E-06 6.9E-11 62.7 5.2 35 29-65 1-35 (474)
187 PTZ00188 adrenodoxin reductase 98.2 7.3E-06 1.6E-10 61.6 6.7 39 26-65 38-76 (506)
188 PTZ00058 glutathione reductase 98.2 6.8E-06 1.5E-10 62.4 6.6 35 26-62 47-81 (561)
189 PRK09853 putative selenate red 98.2 4E-06 8.7E-11 67.3 5.6 36 26-63 538-573 (1019)
190 PLN02328 lysine-specific histo 98.1 7.1E-06 1.5E-10 64.6 6.7 38 26-65 237-274 (808)
191 PLN02697 lycopene epsilon cycl 98.1 7.1E-06 1.5E-10 62.0 6.4 33 27-61 108-140 (529)
192 TIGR00275 flavoprotein, HI0933 98.1 3.1E-06 6.8E-11 61.5 4.4 34 31-66 1-34 (400)
193 PRK10262 thioredoxin reductase 98.1 5.9E-06 1.3E-10 58.0 5.6 34 26-61 5-38 (321)
194 COG0492 TrxB Thioredoxin reduc 98.1 5.5E-06 1.2E-10 58.7 5.3 34 27-62 3-37 (305)
195 PRK12810 gltD glutamate syntha 98.1 6.9E-06 1.5E-10 60.8 6.1 36 26-63 142-177 (471)
196 PLN02612 phytoene desaturase 98.1 7.9E-06 1.7E-10 62.0 6.4 37 26-64 92-128 (567)
197 PRK13977 myosin-cross-reactive 98.1 9.3E-06 2E-10 61.9 6.7 42 26-67 21-64 (576)
198 PLN02676 polyamine oxidase 98.1 7.5E-06 1.6E-10 61.1 5.9 39 26-66 25-64 (487)
199 PRK13748 putative mercuric red 98.1 6E-06 1.3E-10 61.9 5.4 34 26-61 97-130 (561)
200 PRK06327 dihydrolipoamide dehy 98.1 7.4E-06 1.6E-10 60.6 5.8 32 27-60 4-35 (475)
201 PRK12814 putative NADPH-depend 98.1 9.4E-06 2E-10 62.5 6.5 36 26-63 192-227 (652)
202 TIGR01789 lycopene_cycl lycope 98.1 5E-06 1.1E-10 60.0 4.5 34 29-62 1-34 (370)
203 KOG2665|consensus 98.1 5.2E-06 1.1E-10 59.8 4.5 53 25-77 46-104 (453)
204 TIGR01811 sdhA_Bsu succinate d 98.1 3.9E-06 8.5E-11 64.1 4.0 43 30-74 1-44 (603)
205 PRK08275 putative oxidoreducta 98.1 6.6E-06 1.4E-10 62.1 5.2 38 26-63 8-45 (554)
206 PTZ00363 rab-GDP dissociation 98.1 8E-06 1.7E-10 60.5 5.4 39 26-66 3-41 (443)
207 PF00732 GMC_oxred_N: GMC oxid 98.1 5E-06 1.1E-10 57.4 4.1 34 28-63 1-35 (296)
208 PRK11749 dihydropyrimidine deh 98.1 1E-05 2.2E-10 59.6 5.9 36 26-63 139-174 (457)
209 PRK06567 putative bifunctional 98.1 7E-06 1.5E-10 65.7 5.3 35 25-61 381-415 (1028)
210 KOG1276|consensus 98.1 7.5E-06 1.6E-10 60.5 5.1 38 26-63 10-47 (491)
211 TIGR01372 soxA sarcosine oxida 98.1 7.4E-06 1.6E-10 65.6 5.4 36 27-64 163-198 (985)
212 PRK06912 acoL dihydrolipoamide 98.1 9.6E-06 2.1E-10 59.7 5.6 33 29-63 2-34 (458)
213 PRK12770 putative glutamate sy 98.0 1.4E-05 3E-10 56.9 6.1 37 26-64 17-53 (352)
214 PLN02507 glutathione reductase 98.0 1.2E-05 2.6E-10 60.1 6.0 33 26-60 24-56 (499)
215 KOG2960|consensus 98.0 2.1E-07 4.6E-12 63.8 -3.1 50 28-77 77-126 (328)
216 COG1231 Monoamine oxidase [Ami 98.0 9.8E-06 2.1E-10 60.0 5.3 41 25-67 5-45 (450)
217 PRK05192 tRNA uridine 5-carbox 98.0 8.5E-06 1.9E-10 62.5 5.0 34 26-61 3-36 (618)
218 PRK12809 putative oxidoreducta 98.0 1.7E-05 3.7E-10 60.9 6.6 36 26-63 309-344 (639)
219 PF00070 Pyr_redox: Pyridine n 98.0 1.6E-05 3.4E-10 45.4 5.0 34 29-64 1-34 (80)
220 PRK05329 anaerobic glycerol-3- 98.0 1.1E-05 2.3E-10 59.5 5.2 34 27-62 2-35 (422)
221 TIGR01318 gltD_gamma_fam gluta 98.0 1.9E-05 4.1E-10 58.6 6.5 36 26-63 140-175 (467)
222 KOG2415|consensus 98.0 1.1E-05 2.3E-10 60.1 5.1 51 26-77 75-129 (621)
223 PRK08255 salicylyl-CoA 5-hydro 98.0 1E-05 2.2E-10 63.2 5.3 35 29-63 2-36 (765)
224 PRK09564 coenzyme A disulfide 98.0 1.2E-05 2.6E-10 58.6 5.3 35 29-63 2-36 (444)
225 PLN02487 zeta-carotene desatur 98.0 1.4E-05 3E-10 60.9 5.4 36 28-65 76-111 (569)
226 PRK12771 putative glutamate sy 98.0 2.1E-05 4.6E-10 59.4 6.3 36 26-63 136-171 (564)
227 PRK14727 putative mercuric red 98.0 2E-05 4.2E-10 58.5 5.9 35 26-62 15-49 (479)
228 PRK15317 alkyl hydroperoxide r 98.0 1.4E-05 3E-10 59.8 5.1 34 26-61 210-243 (517)
229 TIGR03140 AhpF alkyl hydropero 98.0 1.3E-05 2.9E-10 59.9 5.0 34 26-61 211-244 (515)
230 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 1.3E-05 2.8E-10 59.4 4.8 33 29-63 2-34 (433)
231 PTZ00052 thioredoxin reductase 98.0 1.5E-05 3.1E-10 59.6 4.9 33 27-61 5-37 (499)
232 KOG0685|consensus 97.9 2.3E-05 5E-10 58.5 5.7 35 26-61 20-54 (498)
233 PLN02529 lysine-specific histo 97.9 2.4E-05 5.1E-10 61.2 5.8 37 26-64 159-195 (738)
234 PRK13800 putative oxidoreducta 97.9 2.2E-05 4.7E-10 62.4 5.6 36 26-63 12-47 (897)
235 PRK13512 coenzyme A disulfide 97.9 2E-05 4.4E-10 57.7 5.1 35 29-63 3-37 (438)
236 PRK02106 choline dehydrogenase 97.9 2.1E-05 4.5E-10 59.4 5.1 36 26-62 4-39 (560)
237 COG1148 HdrA Heterodisulfide r 97.9 1.3E-05 2.8E-10 60.3 3.5 37 26-64 123-159 (622)
238 PF04820 Trp_halogenase: Trypt 97.9 2.3E-05 5E-10 58.0 4.9 36 29-64 1-37 (454)
239 PRK09754 phenylpropionate diox 97.9 3.3E-05 7.3E-10 55.8 5.6 36 27-62 3-38 (396)
240 COG2907 Predicted NAD/FAD-bind 97.9 1.9E-05 4.2E-10 57.4 4.1 36 27-65 8-43 (447)
241 KOG2853|consensus 97.9 1.9E-05 4.1E-10 57.5 4.1 60 25-84 84-146 (509)
242 PLN02546 glutathione reductase 97.9 3.3E-05 7.2E-10 58.7 5.6 32 27-60 79-110 (558)
243 TIGR01317 GOGAT_sm_gam glutama 97.9 4.2E-05 9.2E-10 57.0 5.9 36 26-63 142-177 (485)
244 PTZ00318 NADH dehydrogenase-li 97.8 3.6E-05 7.7E-10 56.3 5.3 38 24-63 7-44 (424)
245 KOG1800|consensus 97.8 3.2E-05 6.9E-10 56.7 4.9 37 28-64 21-57 (468)
246 COG3075 GlpB Anaerobic glycero 97.8 3.4E-05 7.4E-10 55.8 4.9 35 26-62 1-35 (421)
247 PLN03000 amine oxidase 97.8 4.3E-05 9.3E-10 60.7 5.7 38 26-65 183-220 (881)
248 PRK04965 NADH:flavorubredoxin 97.8 4.3E-05 9.3E-10 54.8 5.3 35 28-62 3-37 (377)
249 PRK09897 hypothetical protein; 97.8 4.4E-05 9.6E-10 57.8 5.5 36 28-63 2-37 (534)
250 PRK07845 flavoprotein disulfid 97.8 5.5E-05 1.2E-09 55.9 5.8 33 28-62 2-34 (466)
251 TIGR01423 trypano_reduc trypan 97.8 4.6E-05 9.9E-10 56.9 5.3 33 27-61 3-36 (486)
252 COG1249 Lpd Pyruvate/2-oxoglut 97.8 4.6E-05 1E-09 56.7 5.2 35 26-62 3-37 (454)
253 TIGR01438 TGR thioredoxin and 97.8 7.5E-05 1.6E-09 55.7 6.2 33 27-61 2-34 (484)
254 COG0493 GltD NADPH-dependent g 97.8 6.9E-05 1.5E-09 55.8 5.8 35 26-62 122-156 (457)
255 TIGR02462 pyranose_ox pyranose 97.8 5.7E-05 1.2E-09 57.4 5.4 36 28-65 1-36 (544)
256 PTZ00153 lipoamide dehydrogena 97.8 5.1E-05 1.1E-09 58.7 5.2 33 27-61 116-148 (659)
257 COG0562 Glf UDP-galactopyranos 97.8 6.2E-05 1.4E-09 54.1 5.2 34 28-63 2-35 (374)
258 PRK13984 putative oxidoreducta 97.7 8.5E-05 1.8E-09 56.5 6.0 36 26-63 282-317 (604)
259 KOG1298|consensus 97.7 5.4E-05 1.2E-09 55.8 4.4 34 26-61 44-77 (509)
260 PF01134 GIDA: Glucose inhibit 97.7 5.9E-05 1.3E-09 55.3 4.5 29 29-59 1-29 (392)
261 TIGR01810 betA choline dehydro 97.6 6.7E-05 1.5E-09 56.3 3.9 32 29-62 1-33 (532)
262 COG2303 BetA Choline dehydroge 97.6 8.3E-05 1.8E-09 56.3 4.4 36 25-62 5-40 (542)
263 COG3573 Predicted oxidoreducta 97.6 0.00014 3E-09 53.2 5.0 49 27-77 5-56 (552)
264 KOG4716|consensus 97.6 0.00016 3.5E-09 52.8 5.0 51 25-77 17-68 (503)
265 TIGR03378 glycerol3P_GlpB glyc 97.6 7.1E-05 1.5E-09 55.3 3.3 33 28-62 1-33 (419)
266 PLN02976 amine oxidase 97.6 0.00016 3.4E-09 60.3 5.5 37 27-65 693-729 (1713)
267 PRK07846 mycothione reductase; 97.5 0.00023 4.9E-09 52.6 5.4 32 28-63 2-33 (451)
268 PF13454 NAD_binding_9: FAD-NA 97.5 0.00021 4.6E-09 45.7 4.6 32 31-62 1-35 (156)
269 TIGR02485 CobZ_N-term precorri 97.5 0.00013 2.8E-09 53.3 3.9 30 32-63 1-30 (432)
270 PF06039 Mqo: Malate:quinone o 97.5 0.00029 6.3E-09 52.7 5.6 51 27-77 3-56 (488)
271 TIGR03169 Nterm_to_SelD pyridi 97.5 0.0002 4.3E-09 50.9 4.4 35 29-63 1-36 (364)
272 COG1252 Ndh NADH dehydrogenase 97.4 0.00037 7.9E-09 51.4 5.0 37 27-63 3-39 (405)
273 KOG0399|consensus 97.4 0.00035 7.6E-09 57.3 5.3 45 24-77 1782-1826(2142)
274 KOG0042|consensus 97.4 8.5E-05 1.9E-09 56.6 1.5 45 26-72 66-110 (680)
275 TIGR00136 gidA glucose-inhibit 97.3 0.00035 7.7E-09 53.8 4.7 32 28-61 1-32 (617)
276 TIGR03452 mycothione_red mycot 97.3 0.00052 1.1E-08 50.7 5.1 32 27-62 2-33 (452)
277 PLN02785 Protein HOTHEAD 97.3 0.00051 1.1E-08 52.6 5.0 34 27-63 55-88 (587)
278 COG0446 HcaD Uncharacterized N 97.1 0.00097 2.1E-08 47.2 4.8 37 27-65 136-172 (415)
279 PRK14989 nitrite reductase sub 97.1 0.0013 2.9E-08 52.3 5.6 37 28-64 4-42 (847)
280 KOG1238|consensus 97.1 0.00077 1.7E-08 51.9 4.0 39 25-64 55-93 (623)
281 KOG1335|consensus 96.9 0.0013 2.8E-08 48.7 4.0 39 26-66 38-76 (506)
282 PF02558 ApbA: Ketopantoate re 96.9 0.002 4.4E-08 40.4 4.5 31 30-62 1-31 (151)
283 COG4529 Uncharacterized protei 96.9 0.0022 4.9E-08 48.0 5.2 36 28-63 2-38 (474)
284 COG0445 GidA Flavin-dependent 96.9 0.0018 3.9E-08 49.5 4.6 34 27-62 4-37 (621)
285 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0025 5.3E-08 40.8 4.3 31 29-61 1-31 (157)
286 TIGR02374 nitri_red_nirB nitri 96.8 0.0019 4.2E-08 50.9 4.5 35 30-64 1-36 (785)
287 KOG2844|consensus 96.8 0.0038 8.1E-08 48.9 5.9 50 26-77 38-88 (856)
288 PF02737 3HCDH_N: 3-hydroxyacy 96.8 0.0028 6E-08 41.6 4.5 31 29-61 1-31 (180)
289 PF03721 UDPG_MGDP_dh_N: UDP-g 96.7 0.0018 3.9E-08 42.8 3.3 31 29-61 2-32 (185)
290 PRK09754 phenylpropionate diox 96.7 0.0033 7.3E-08 45.5 5.0 35 27-63 144-178 (396)
291 PRK01438 murD UDP-N-acetylmura 96.7 0.0034 7.3E-08 46.5 5.0 33 27-61 16-48 (480)
292 KOG4254|consensus 96.7 0.0025 5.4E-08 47.9 4.2 37 25-63 12-48 (561)
293 PRK02705 murD UDP-N-acetylmura 96.7 0.0031 6.8E-08 46.3 4.6 34 29-64 2-35 (459)
294 PRK05976 dihydrolipoamide dehy 96.6 0.004 8.7E-08 46.1 4.9 34 27-62 180-213 (472)
295 PRK06249 2-dehydropantoate 2-r 96.6 0.0053 1.1E-07 43.3 5.3 33 28-62 6-38 (313)
296 PRK07251 pyridine nucleotide-d 96.6 0.0046 1E-07 45.3 5.1 34 27-62 157-190 (438)
297 KOG2404|consensus 96.6 0.0038 8.2E-08 45.5 4.3 39 29-69 11-49 (477)
298 TIGR01470 cysG_Nterm siroheme 96.5 0.0075 1.6E-07 40.5 5.2 36 26-63 8-43 (205)
299 PRK06719 precorrin-2 dehydroge 96.5 0.0075 1.6E-07 38.9 5.0 34 26-61 12-45 (157)
300 COG1249 Lpd Pyruvate/2-oxoglut 96.5 0.0065 1.4E-07 45.4 5.1 35 27-63 173-207 (454)
301 TIGR01350 lipoamide_DH dihydro 96.5 0.0058 1.3E-07 44.9 4.8 34 27-62 170-203 (461)
302 PRK04965 NADH:flavorubredoxin 96.4 0.0065 1.4E-07 43.6 4.8 34 27-62 141-174 (377)
303 PRK05708 2-dehydropantoate 2-r 96.4 0.0072 1.6E-07 42.6 4.9 32 28-61 3-34 (305)
304 PF13738 Pyr_redox_3: Pyridine 96.4 0.0069 1.5E-07 39.3 4.5 35 26-62 166-200 (203)
305 PF01593 Amino_oxidase: Flavin 96.4 0.0047 1E-07 43.3 4.0 28 37-66 1-28 (450)
306 COG0569 TrkA K+ transport syst 96.4 0.0068 1.5E-07 41.2 4.6 32 29-62 2-33 (225)
307 PRK07530 3-hydroxybutyryl-CoA 96.4 0.0083 1.8E-07 41.8 5.1 32 28-61 5-36 (292)
308 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0069 1.5E-07 42.4 4.7 33 28-62 6-38 (286)
309 PRK06129 3-hydroxyacyl-CoA deh 96.4 0.007 1.5E-07 42.6 4.6 32 29-62 4-35 (308)
310 TIGR02053 MerA mercuric reduct 96.4 0.008 1.7E-07 44.3 5.0 33 28-62 167-199 (463)
311 PRK06467 dihydrolipoamide dehy 96.4 0.0078 1.7E-07 44.7 5.0 33 28-62 175-207 (471)
312 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0044 9.5E-08 45.2 3.4 33 28-62 4-36 (439)
313 PRK06416 dihydrolipoamide dehy 96.3 0.0084 1.8E-07 44.1 5.0 34 28-63 173-206 (462)
314 PRK07846 mycothione reductase; 96.3 0.0088 1.9E-07 44.2 5.1 34 27-62 166-199 (451)
315 PRK06912 acoL dihydrolipoamide 96.3 0.0091 2E-07 44.1 5.2 33 28-62 171-203 (458)
316 PRK06115 dihydrolipoamide dehy 96.3 0.0094 2E-07 44.2 5.2 34 27-62 174-207 (466)
317 PRK08229 2-dehydropantoate 2-r 96.3 0.0087 1.9E-07 42.3 4.8 32 28-61 3-34 (341)
318 KOG3855|consensus 96.3 0.011 2.3E-07 44.1 5.3 39 27-65 36-76 (481)
319 TIGR01421 gluta_reduc_1 glutat 96.3 0.01 2.2E-07 43.9 5.2 34 27-62 166-199 (450)
320 PRK06522 2-dehydropantoate 2-r 96.3 0.0089 1.9E-07 41.4 4.7 31 29-61 2-32 (304)
321 KOG2311|consensus 96.3 0.0075 1.6E-07 45.9 4.5 35 25-61 26-60 (679)
322 PRK06370 mercuric reductase; V 96.3 0.0099 2.1E-07 43.9 5.1 34 27-62 171-204 (463)
323 PRK06718 precorrin-2 dehydroge 96.3 0.012 2.5E-07 39.5 5.1 35 26-62 9-43 (202)
324 TIGR03385 CoA_CoA_reduc CoA-di 96.3 0.0093 2E-07 43.4 4.9 34 27-62 137-170 (427)
325 PRK05249 soluble pyridine nucl 96.3 0.0094 2E-07 43.8 4.9 34 27-62 175-208 (461)
326 PF13241 NAD_binding_7: Putati 96.3 0.0057 1.2E-07 36.6 3.2 34 26-61 6-39 (103)
327 PF06100 Strep_67kDa_ant: Stre 96.3 0.012 2.6E-07 44.5 5.4 40 28-67 3-44 (500)
328 PRK14106 murD UDP-N-acetylmura 96.2 0.012 2.6E-07 43.2 5.2 34 27-62 5-38 (450)
329 PRK06292 dihydrolipoamide dehy 96.2 0.011 2.4E-07 43.4 5.1 34 27-62 169-202 (460)
330 PRK12921 2-dehydropantoate 2-r 96.2 0.0098 2.1E-07 41.3 4.6 30 29-60 2-31 (305)
331 PRK13512 coenzyme A disulfide 96.2 0.0099 2.1E-07 43.7 4.8 33 28-62 149-181 (438)
332 PRK09260 3-hydroxybutyryl-CoA 96.2 0.011 2.4E-07 41.2 4.7 31 29-61 3-33 (288)
333 COG1004 Ugd Predicted UDP-gluc 96.2 0.0095 2.1E-07 44.0 4.4 31 29-61 2-32 (414)
334 PRK07818 dihydrolipoamide dehy 96.1 0.013 2.8E-07 43.3 5.1 34 27-62 172-205 (466)
335 PRK08293 3-hydroxybutyryl-CoA 96.1 0.012 2.6E-07 41.0 4.7 32 28-61 4-35 (287)
336 TIGR03452 mycothione_red mycot 96.1 0.013 2.8E-07 43.4 5.0 34 27-62 169-202 (452)
337 KOG2755|consensus 96.1 0.0054 1.2E-07 43.4 2.9 33 29-61 1-33 (334)
338 PF01488 Shikimate_DH: Shikima 96.1 0.021 4.6E-07 35.7 5.2 34 26-61 11-45 (135)
339 PRK06327 dihydrolipoamide dehy 96.1 0.014 3E-07 43.4 4.9 34 27-62 183-216 (475)
340 PRK06035 3-hydroxyacyl-CoA deh 96.0 0.015 3.2E-07 40.6 4.7 33 28-62 4-36 (291)
341 TIGR02354 thiF_fam2 thiamine b 96.0 0.018 3.9E-07 38.5 4.8 34 26-61 20-54 (200)
342 PRK07066 3-hydroxybutyryl-CoA 96.0 0.014 3E-07 41.8 4.4 32 28-61 8-39 (321)
343 PRK06130 3-hydroxybutyryl-CoA 95.9 0.02 4.3E-07 40.2 5.1 32 28-61 5-36 (311)
344 PRK05808 3-hydroxybutyryl-CoA 95.9 0.017 3.6E-07 40.1 4.6 32 28-61 4-35 (282)
345 PLN02545 3-hydroxybutyryl-CoA 95.9 0.022 4.7E-07 39.8 5.1 33 28-62 5-37 (295)
346 PF00899 ThiF: ThiF family; I 95.9 0.017 3.6E-07 35.9 4.1 32 28-61 3-35 (135)
347 PRK09564 coenzyme A disulfide 95.9 0.02 4.4E-07 41.8 5.1 34 27-62 149-182 (444)
348 PRK06116 glutathione reductase 95.9 0.021 4.5E-07 42.0 5.1 34 27-62 167-200 (450)
349 PRK11064 wecC UDP-N-acetyl-D-m 95.8 0.018 3.9E-07 42.4 4.7 33 28-62 4-36 (415)
350 PRK13748 putative mercuric red 95.8 0.018 3.9E-07 43.4 4.8 33 27-61 270-302 (561)
351 TIGR01424 gluta_reduc_2 glutat 95.8 0.023 5E-07 41.8 5.1 35 27-63 166-200 (446)
352 PF01262 AlaDh_PNT_C: Alanine 95.8 0.025 5.4E-07 36.6 4.7 34 26-61 19-52 (168)
353 PLN02507 glutathione reductase 95.8 0.023 5E-07 42.7 5.1 34 27-62 203-236 (499)
354 cd05292 LDH_2 A subgroup of L- 95.7 0.022 4.8E-07 40.3 4.7 32 29-62 2-35 (308)
355 PRK07845 flavoprotein disulfid 95.7 0.03 6.4E-07 41.5 5.5 33 28-62 178-210 (466)
356 TIGR02374 nitri_red_nirB nitri 95.7 0.021 4.5E-07 45.2 4.8 34 28-63 141-174 (785)
357 PRK14694 putative mercuric red 95.7 0.023 4.9E-07 42.1 4.8 33 27-61 178-210 (468)
358 TIGR01763 MalateDH_bact malate 95.7 0.024 5.2E-07 40.2 4.7 32 28-61 2-34 (305)
359 TIGR03140 AhpF alkyl hydropero 95.7 0.02 4.4E-07 43.0 4.5 34 27-62 352-385 (515)
360 PRK08010 pyridine nucleotide-d 95.7 0.026 5.7E-07 41.3 5.0 33 28-62 159-191 (441)
361 PF13434 K_oxygenase: L-lysine 95.7 0.012 2.5E-07 42.4 3.0 34 28-62 3-36 (341)
362 PRK14620 NAD(P)H-dependent gly 95.6 0.024 5.2E-07 40.0 4.6 31 29-61 2-32 (326)
363 PRK14727 putative mercuric red 95.6 0.025 5.4E-07 42.1 4.8 32 28-61 189-220 (479)
364 PTZ00058 glutathione reductase 95.6 0.025 5.5E-07 43.3 4.9 34 27-62 237-270 (561)
365 PRK10262 thioredoxin reductase 95.6 0.028 6E-07 39.4 4.7 34 27-62 146-179 (321)
366 KOG3851|consensus 95.6 0.017 3.6E-07 42.2 3.5 36 26-61 38-73 (446)
367 KOG0404|consensus 95.6 0.039 8.4E-07 38.6 5.2 34 26-61 7-40 (322)
368 TIGR01316 gltA glutamate synth 95.6 0.025 5.3E-07 41.9 4.6 33 27-61 272-304 (449)
369 PTZ00052 thioredoxin reductase 95.5 0.027 5.9E-07 42.2 4.7 32 28-61 183-214 (499)
370 TIGR03143 AhpF_homolog putativ 95.5 0.028 6E-07 42.7 4.8 34 27-62 143-176 (555)
371 TIGR01438 TGR thioredoxin and 95.5 0.028 6E-07 42.1 4.7 32 28-61 181-212 (484)
372 PTZ00153 lipoamide dehydrogena 95.5 0.029 6.4E-07 43.7 4.9 33 28-62 313-345 (659)
373 TIGR00518 alaDH alanine dehydr 95.5 0.032 7E-07 40.6 4.9 34 26-61 166-199 (370)
374 TIGR01292 TRX_reduct thioredox 95.5 0.033 7.1E-07 38.0 4.7 34 27-62 141-174 (300)
375 PRK14618 NAD(P)H-dependent gly 95.5 0.039 8.3E-07 39.1 5.1 31 29-61 6-36 (328)
376 TIGR03026 NDP-sugDHase nucleot 95.4 0.024 5.1E-07 41.5 4.1 32 29-62 2-33 (411)
377 PRK12475 thiamine/molybdopteri 95.4 0.036 7.8E-07 39.9 4.9 35 26-62 23-58 (338)
378 cd01483 E1_enzyme_family Super 95.4 0.042 9E-07 34.3 4.7 31 29-61 1-32 (143)
379 PF00996 GDI: GDP dissociation 95.4 0.03 6.5E-07 41.8 4.6 37 25-63 2-38 (438)
380 PTZ00082 L-lactate dehydrogena 95.4 0.051 1.1E-06 38.9 5.5 33 28-62 7-40 (321)
381 PRK14989 nitrite reductase sub 95.4 0.03 6.5E-07 44.8 4.7 33 28-62 146-178 (847)
382 PRK00094 gpsA NAD(P)H-dependen 95.4 0.035 7.6E-07 38.8 4.6 31 29-61 3-33 (325)
383 PF02254 TrkA_N: TrkA-N domain 95.4 0.045 9.8E-07 32.7 4.5 31 30-62 1-31 (116)
384 PRK07688 thiamine/molybdopteri 95.3 0.04 8.7E-07 39.7 4.9 35 26-62 23-58 (339)
385 PRK15116 sulfur acceptor prote 95.3 0.044 9.5E-07 38.4 4.9 34 26-61 29-63 (268)
386 PRK15317 alkyl hydroperoxide r 95.3 0.037 8.1E-07 41.6 4.8 34 27-62 351-384 (517)
387 PRK14619 NAD(P)H-dependent gly 95.3 0.045 9.7E-07 38.5 4.9 33 28-62 5-37 (308)
388 PF00056 Ldh_1_N: lactate/mala 95.3 0.052 1.1E-06 34.3 4.8 33 29-61 2-35 (141)
389 PRK12770 putative glutamate sy 95.3 0.043 9.4E-07 39.1 4.9 33 27-61 172-205 (352)
390 PRK12831 putative oxidoreducta 95.3 0.036 7.8E-07 41.3 4.6 33 27-61 281-313 (464)
391 PRK00066 ldh L-lactate dehydro 95.2 0.062 1.3E-06 38.3 5.5 34 27-62 6-41 (315)
392 cd00401 AdoHcyase S-adenosyl-L 95.2 0.044 9.6E-07 40.6 4.9 35 26-62 201-235 (413)
393 PLN02353 probable UDP-glucose 95.2 0.042 9.2E-07 41.3 4.8 33 29-61 3-35 (473)
394 COG3634 AhpF Alkyl hydroperoxi 95.2 0.015 3.2E-07 43.0 2.2 32 26-59 210-241 (520)
395 PRK07531 bifunctional 3-hydrox 95.2 0.045 9.7E-07 41.2 4.8 32 28-61 5-36 (495)
396 PLN02546 glutathione reductase 95.1 0.044 9.6E-07 41.9 4.8 34 27-62 252-285 (558)
397 cd05291 HicDH_like L-2-hydroxy 95.1 0.05 1.1E-06 38.4 4.7 32 29-62 2-35 (306)
398 cd05293 LDH_1 A subgroup of L- 95.1 0.062 1.3E-06 38.3 5.2 36 27-62 3-38 (312)
399 TIGR02356 adenyl_thiF thiazole 95.1 0.063 1.4E-06 35.8 4.9 34 26-61 20-54 (202)
400 PRK06223 malate dehydrogenase; 95.1 0.055 1.2E-06 37.9 4.8 33 28-62 3-36 (307)
401 PRK05690 molybdopterin biosynt 95.1 0.059 1.3E-06 37.1 4.9 34 26-61 31-65 (245)
402 PRK12549 shikimate 5-dehydroge 95.0 0.059 1.3E-06 37.8 4.9 33 27-61 127-160 (284)
403 COG0771 MurD UDP-N-acetylmuram 95.0 0.038 8.2E-07 41.4 4.1 36 27-64 7-42 (448)
404 PRK07417 arogenate dehydrogena 95.0 0.042 9E-07 38.2 4.1 31 29-61 2-32 (279)
405 KOG0405|consensus 95.0 0.061 1.3E-06 39.7 5.0 35 26-62 19-53 (478)
406 COG1748 LYS9 Saccharopine dehy 95.0 0.051 1.1E-06 40.1 4.6 32 28-61 2-34 (389)
407 PRK02472 murD UDP-N-acetylmura 95.0 0.067 1.4E-06 39.2 5.3 34 27-62 5-38 (447)
408 TIGR02355 moeB molybdopterin s 95.0 0.062 1.3E-06 36.9 4.8 35 26-62 23-58 (240)
409 cd05311 NAD_bind_2_malic_enz N 95.0 0.062 1.3E-06 36.6 4.7 34 26-61 24-60 (226)
410 PRK09424 pntA NAD(P) transhydr 95.0 0.059 1.3E-06 41.0 5.0 35 26-62 164-198 (509)
411 TIGR01423 trypano_reduc trypan 95.0 0.056 1.2E-06 40.6 4.9 36 27-62 187-223 (486)
412 PRK08644 thiamine biosynthesis 94.9 0.068 1.5E-06 36.0 4.8 34 26-61 27-61 (212)
413 PRK08306 dipicolinate synthase 94.9 0.064 1.4E-06 37.9 4.9 35 26-62 151-185 (296)
414 cd00757 ThiF_MoeB_HesA_family 94.9 0.068 1.5E-06 36.2 4.8 34 26-61 20-54 (228)
415 PF03446 NAD_binding_2: NAD bi 94.9 0.064 1.4E-06 34.4 4.5 32 28-61 2-33 (163)
416 cd01075 NAD_bind_Leu_Phe_Val_D 94.9 0.078 1.7E-06 35.4 5.0 34 26-61 27-60 (200)
417 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.073 1.6E-06 40.3 5.3 33 28-62 8-40 (507)
418 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.9 0.057 1.2E-06 40.9 4.7 33 28-62 6-38 (503)
419 COG1893 ApbA Ketopantoate redu 94.8 0.056 1.2E-06 38.4 4.4 31 29-61 2-32 (307)
420 PRK08328 hypothetical protein; 94.8 0.074 1.6E-06 36.2 4.8 35 26-62 26-61 (231)
421 PRK04308 murD UDP-N-acetylmura 94.8 0.088 1.9E-06 38.7 5.5 34 27-62 5-38 (445)
422 cd01487 E1_ThiF_like E1_ThiF_l 94.8 0.075 1.6E-06 34.7 4.7 31 29-61 1-32 (174)
423 PF00670 AdoHcyase_NAD: S-aden 94.8 0.059 1.3E-06 35.3 4.0 35 26-62 22-56 (162)
424 cd05191 NAD_bind_amino_acid_DH 94.7 0.12 2.6E-06 29.7 4.8 33 26-60 22-55 (86)
425 TIGR00936 ahcY adenosylhomocys 94.7 0.075 1.6E-06 39.4 4.8 35 26-62 194-228 (406)
426 PRK11730 fadB multifunctional 94.7 0.06 1.3E-06 42.3 4.5 33 28-62 314-346 (715)
427 cd01339 LDH-like_MDH L-lactate 94.6 0.062 1.3E-06 37.7 4.2 31 30-62 1-32 (300)
428 PRK03369 murD UDP-N-acetylmura 94.6 0.078 1.7E-06 39.7 4.9 33 27-61 12-44 (488)
429 PRK01710 murD UDP-N-acetylmura 94.6 0.076 1.6E-06 39.4 4.8 33 28-62 15-47 (458)
430 PRK04690 murD UDP-N-acetylmura 94.6 0.074 1.6E-06 39.7 4.7 33 27-61 8-40 (468)
431 PRK04148 hypothetical protein; 94.5 0.046 1E-06 34.7 3.0 32 28-62 18-49 (134)
432 cd01080 NAD_bind_m-THF_DH_Cycl 94.5 0.11 2.3E-06 34.0 4.8 35 26-62 43-78 (168)
433 cd01485 E1-1_like Ubiquitin ac 94.5 0.09 2E-06 35.0 4.5 34 26-61 18-52 (198)
434 PRK15057 UDP-glucose 6-dehydro 94.5 0.073 1.6E-06 39.0 4.4 30 29-61 2-31 (388)
435 TIGR02437 FadB fatty oxidation 94.5 0.07 1.5E-06 42.0 4.5 32 28-61 314-345 (714)
436 TIGR03197 MnmC_Cterm tRNA U-34 94.5 0.044 9.5E-07 39.3 3.2 36 42-79 1-37 (381)
437 cd00755 YgdL_like Family of ac 94.4 0.1 2.2E-06 35.7 4.8 33 27-61 11-44 (231)
438 TIGR02853 spore_dpaA dipicolin 94.4 0.096 2.1E-06 36.9 4.7 35 26-62 150-184 (287)
439 PRK11749 dihydropyrimidine deh 94.4 0.087 1.9E-06 38.9 4.7 33 27-61 273-306 (457)
440 PRK05562 precorrin-2 dehydroge 94.4 0.12 2.6E-06 35.4 5.0 35 26-62 24-58 (223)
441 PTZ00318 NADH dehydrogenase-li 94.4 0.085 1.8E-06 38.7 4.6 35 28-62 174-220 (424)
442 PRK10669 putative cation:proto 94.4 0.078 1.7E-06 40.3 4.4 34 27-62 417-450 (558)
443 PTZ00117 malate dehydrogenase; 94.3 0.13 2.7E-06 36.7 5.2 34 27-62 5-39 (319)
444 PRK12778 putative bifunctional 94.3 0.086 1.9E-06 41.5 4.7 33 27-61 570-603 (752)
445 TIGR02964 xanthine_xdhC xanthi 94.3 0.12 2.7E-06 35.6 4.9 35 26-62 99-133 (246)
446 TIGR01505 tartro_sem_red 2-hyd 94.2 0.086 1.9E-06 36.7 4.2 32 29-62 1-32 (291)
447 PRK05476 S-adenosyl-L-homocyst 94.2 0.11 2.4E-06 38.7 5.0 35 26-62 211-245 (425)
448 PRK09496 trkA potassium transp 94.2 0.1 2.2E-06 38.1 4.7 31 29-61 2-32 (453)
449 cd01492 Aos1_SUMO Ubiquitin ac 94.2 0.11 2.4E-06 34.6 4.4 34 26-61 20-54 (197)
450 TIGR02441 fa_ox_alpha_mit fatt 94.2 0.093 2E-06 41.5 4.6 33 28-62 336-368 (737)
451 PRK11559 garR tartronate semia 94.1 0.12 2.6E-06 35.9 4.8 31 29-61 4-34 (296)
452 TIGR01915 npdG NADPH-dependent 94.1 0.13 2.8E-06 34.5 4.7 32 29-62 2-34 (219)
453 PRK07502 cyclohexadienyl dehyd 94.1 0.13 2.8E-06 36.1 4.8 32 28-61 7-40 (307)
454 PRK00141 murD UDP-N-acetylmura 94.1 0.12 2.6E-06 38.6 4.9 33 27-61 15-47 (473)
455 PRK08223 hypothetical protein; 94.1 0.12 2.7E-06 36.6 4.7 35 26-62 26-61 (287)
456 PRK09496 trkA potassium transp 94.0 0.12 2.5E-06 37.8 4.7 34 27-62 231-264 (453)
457 TIGR00561 pntA NAD(P) transhyd 94.0 0.13 2.8E-06 39.2 5.0 34 27-62 164-197 (511)
458 cd05290 LDH_3 A subgroup of L- 94.0 0.14 3E-06 36.5 4.8 31 29-61 1-33 (307)
459 PRK11154 fadJ multifunctional 94.0 0.098 2.1E-06 41.1 4.4 32 28-61 310-342 (708)
460 PRK12548 shikimate 5-dehydroge 94.0 0.16 3.4E-06 35.7 5.0 33 27-61 126-159 (289)
461 PRK11199 tyrA bifunctional cho 93.9 0.095 2E-06 38.1 3.9 34 26-61 97-131 (374)
462 TIGR00507 aroE shikimate 5-deh 93.9 0.15 3.3E-06 35.2 4.8 33 27-61 117-149 (270)
463 PRK00258 aroE shikimate 5-dehy 93.8 0.16 3.4E-06 35.4 4.8 33 27-61 123-156 (278)
464 cd01065 NAD_bind_Shikimate_DH 93.8 0.2 4.3E-06 31.2 4.9 33 27-61 19-52 (155)
465 PRK00683 murD UDP-N-acetylmura 93.8 0.13 2.9E-06 37.6 4.5 33 28-62 4-36 (418)
466 cd01484 E1-2_like Ubiquitin ac 93.7 0.16 3.4E-06 35.0 4.6 31 29-61 1-32 (234)
467 PF13478 XdhC_C: XdhC Rossmann 93.7 0.081 1.8E-06 33.4 2.9 31 30-62 1-31 (136)
468 PRK05597 molybdopterin biosynt 93.7 0.16 3.4E-06 36.8 4.7 34 26-61 27-61 (355)
469 cd01078 NAD_bind_H4MPT_DH NADP 93.7 0.21 4.5E-06 32.7 4.9 33 27-61 28-61 (194)
470 PRK08017 oxidoreductase; Provi 93.7 0.19 4E-06 33.6 4.8 32 28-61 3-35 (256)
471 PRK07878 molybdopterin biosynt 93.6 0.16 3.5E-06 37.2 4.8 34 26-61 41-75 (392)
472 PRK15461 NADH-dependent gamma- 93.6 0.14 3.1E-06 35.9 4.4 32 29-62 3-34 (296)
473 PRK03803 murD UDP-N-acetylmura 93.6 0.2 4.3E-06 36.9 5.2 35 26-62 5-39 (448)
474 TIGR02440 FadJ fatty oxidation 93.6 0.14 3E-06 40.3 4.6 33 28-62 305-338 (699)
475 PRK05600 thiamine biosynthesis 93.6 0.18 3.8E-06 36.9 4.9 34 26-61 40-74 (370)
476 PRK11880 pyrroline-5-carboxyla 93.6 0.18 3.8E-06 34.5 4.7 32 28-61 3-37 (267)
477 PRK00536 speE spermidine synth 93.6 0.091 2E-06 36.8 3.2 32 26-61 72-103 (262)
478 PF03807 F420_oxidored: NADP o 93.5 0.21 4.5E-06 28.8 4.4 31 29-61 1-35 (96)
479 PLN02695 GDP-D-mannose-3',5'-e 93.5 0.26 5.6E-06 35.5 5.6 34 26-61 20-54 (370)
480 PRK00421 murC UDP-N-acetylmura 93.5 0.16 3.5E-06 37.6 4.6 33 28-62 8-41 (461)
481 cd01488 Uba3_RUB Ubiquitin act 93.4 0.19 4E-06 35.7 4.7 31 29-61 1-32 (291)
482 cd01486 Apg7 Apg7 is an E1-lik 93.4 0.18 3.9E-06 36.2 4.5 31 29-61 1-32 (307)
483 TIGR03736 PRTRC_ThiF PRTRC sys 93.4 0.22 4.7E-06 34.6 4.8 36 26-61 10-54 (244)
484 PRK07411 hypothetical protein; 93.3 0.19 4.1E-06 36.9 4.7 34 26-61 37-71 (390)
485 PRK14027 quinate/shikimate deh 93.3 0.22 4.8E-06 35.0 4.9 33 27-61 127-160 (283)
486 TIGR01809 Shik-DH-AROM shikima 93.3 0.21 4.6E-06 34.9 4.8 33 27-61 125-158 (282)
487 COG2072 TrkA Predicted flavopr 93.2 0.16 3.4E-06 37.8 4.2 35 26-62 174-208 (443)
488 COG1648 CysG Siroheme synthase 93.2 0.26 5.6E-06 33.4 4.9 35 26-62 11-45 (210)
489 COG1250 FadB 3-hydroxyacyl-CoA 93.2 0.15 3.3E-06 36.5 3.9 32 28-61 4-35 (307)
490 TIGR00872 gnd_rel 6-phosphoglu 93.2 0.18 4E-06 35.3 4.4 32 29-62 2-33 (298)
491 PRK07060 short chain dehydroge 93.2 0.34 7.4E-06 32.0 5.5 33 27-61 9-42 (245)
492 COG0446 HcaD Uncharacterized N 93.2 0.21 4.6E-06 35.3 4.7 32 30-61 1-32 (415)
493 PRK08762 molybdopterin biosynt 93.2 0.2 4.3E-06 36.4 4.6 34 26-61 134-168 (376)
494 cd01489 Uba2_SUMO Ubiquitin ac 93.2 0.19 4.1E-06 36.0 4.4 31 29-61 1-32 (312)
495 PLN02172 flavin-containing mon 93.1 0.13 2.9E-06 38.4 3.7 34 26-61 203-236 (461)
496 PLN02240 UDP-glucose 4-epimera 93.1 0.27 5.7E-06 34.5 5.1 33 26-60 4-37 (352)
497 PLN02494 adenosylhomocysteinas 93.1 0.24 5.1E-06 37.5 5.0 35 26-62 253-287 (477)
498 PRK12550 shikimate 5-dehydroge 93.1 0.23 4.9E-06 34.8 4.7 32 28-61 123-155 (272)
499 PRK02006 murD UDP-N-acetylmura 93.0 0.18 3.9E-06 37.7 4.3 33 28-62 8-40 (498)
500 TIGR01035 hemA glutamyl-tRNA r 93.0 0.23 5E-06 36.6 4.8 34 26-61 179-213 (417)
No 1
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.04 E-value=6.4e-10 Score=77.16 Aligned_cols=48 Identities=42% Similarity=0.545 Sum_probs=44.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 78 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~ 78 (90)
||+|||+|++|+++|+.|++ .|.+|+|+|++..+.++|..++|++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~ 48 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPG 48 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeecccccccccccccccccc
Confidence 79999999999999999999 8999999999976788899999999884
No 2
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.04 E-value=1.1e-09 Score=78.76 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCCCCccCcCeeeecCCC
Q psy1704 21 PKVMGSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDTTSDGAAGLFEPSPN 80 (90)
Q Consensus 21 ~~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~~~s~~~~g~~~~~~~ 80 (90)
..+....+||+|||||++|+++|+.|+++ .|. +|+|+|+.....++|..++|++...+.
T Consensus 24 ~~~~~~~~dvvIIGgGi~G~s~A~~L~~~-~g~~~V~vle~~~~~~gas~~~~g~~~~~~~ 83 (407)
T TIGR01373 24 SPEPKPTYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGWLGGGNTGRNTTIVRSNYL 83 (407)
T ss_pred CCCCCccCCEEEECCcHHHHHHHHHHHHh-cCCCeEEEEEcccccCcccccccceeeeccc
Confidence 34445568999999999999999999982 274 899999987667788888898876543
No 3
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.94 E-value=2.4e-09 Score=75.93 Aligned_cols=49 Identities=33% Similarity=0.403 Sum_probs=43.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 78 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~ 78 (90)
+||+|||+|++|+++|+.|++ .|.+|+|+|+.....++|..++|++.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~~~gaS~~~~G~~~~~ 49 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSRAQGASVRNFGQVWPT 49 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCceEEec
Confidence 489999999999999999999 7999999999876678888898988763
No 4
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=4.2e-09 Score=75.85 Aligned_cols=49 Identities=33% Similarity=0.439 Sum_probs=43.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPS 78 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~ 78 (90)
.||+|||+|++|+++|+.|++ .|.+|+|+|++. ...++|..++|++.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~~~~as~~~~g~~~~~ 51 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYAAMETSFANGGQLSAS 51 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcCcccccCCEEeec
Confidence 489999999999999999999 799999999986 4567888999999774
No 5
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.89 E-value=3.7e-09 Score=77.66 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=44.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|++|+++|+.|+++.+|.+|+|+|++....++|..++|++.+
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~ 74 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT 74 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccc
Confidence 3479999999999999999999843489999999987667888889887654
No 6
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.88 E-value=5.4e-09 Score=75.17 Aligned_cols=51 Identities=29% Similarity=0.607 Sum_probs=43.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeeecC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFEPS 78 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~~~ 78 (90)
.||+|||||++|+++|+.|+++.+|.+|+|+|+... ...+|..++|++++.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~ 54 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAG 54 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccc
Confidence 699999999999999999999434999999999853 456788888988774
No 7
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.85 E-value=7.2e-09 Score=77.89 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSP 79 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~ 79 (90)
.+||+|||||+.|+++|+.|++ .|.+|+|+|+.....++|..++|+++...
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ 56 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGA 56 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccc
Confidence 4799999999999999999999 89999999998777788999999998743
No 8
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.84 E-value=6.5e-09 Score=73.75 Aligned_cols=50 Identities=32% Similarity=0.383 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
+..||+|||+|++|+++|+.|++ .|.+|+++|+...+.+++..+++.+..
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~g~s~~~~~~~~~ 52 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGGGAAGRNAGGILA 52 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCCcchhcchhhhcc
Confidence 45799999999999999999999 889999999987665455445444444
No 9
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=77.90 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=44.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSP 79 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~~ 79 (90)
.||+|||+|++|+++|+.|++ .|.+|+|+|+.. ...++|..++|++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~ 311 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAPAQGASGNRQGALYPLL 311 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCccccCCcCccccccccc
Confidence 599999999999999999999 899999999975 44678899999998854
No 10
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=5.9e-09 Score=77.50 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...+||+|||||+.|+.+|+.|++ .|.+|+|+|+.....++|..++++++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~GtS~~ss~lihg 54 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGTSSRSGKLVHG 54 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCCchhhhhhHHH
Confidence 345799999999999999999999 899999999997777888888887765
No 11
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.81 E-value=9.1e-10 Score=75.11 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=39.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
..||+|||+|++||++|++|++ .+.+|+|+|++..+++..|..+=+++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~GGmlf~ 77 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWGGGMLFN 77 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccccccccc
Confidence 3599999999999999999999 89999999998777766564443333
No 12
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.79 E-value=8.9e-09 Score=74.05 Aligned_cols=49 Identities=35% Similarity=0.493 Sum_probs=43.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeeecCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFEPSP 79 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~~~~ 79 (90)
||+|||||++|+++|+.|++ .|.+|+|+|+... ..++|..++|++++.+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~~~aS~~n~g~i~~~~ 51 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPALETSFANAGQISPGY 51 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchhhhheeccCccccccc
Confidence 79999999999999999999 8999999999853 4678889999988854
No 13
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.77 E-value=1.7e-08 Score=75.29 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+||+|||||+.|+.+|+.|++ .|++|+|+|++....++|..+.++++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~GtS~~ss~lihg 54 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASATSSASTKLIHG 54 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccccccc
Confidence 45799999999999999999999 899999999987766777666666655
No 14
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.74 E-value=3.2e-08 Score=70.20 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=39.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC--CCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~--~~s~~~~g~~~~ 77 (90)
..||+|||||++|+++|+.|++ .|.+|+|+|++.... +++....+++..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~~~~~~~~~ 53 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSHGDTRIIRH 53 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcCCcceEEEe
Confidence 4699999999999999999999 799999999976442 344455555554
No 15
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.73 E-value=2.7e-08 Score=71.92 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
+.+||+|||+|++|+++|+.|++ .|.+|+|+|+...++..... ++.+.+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~-~~~~~~ 50 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCC-GGGLSP 50 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccc-cceech
Confidence 45799999999999999999999 89999999998766543222 344444
No 16
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.73 E-value=2.2e-08 Score=56.34 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=28.3
Q ss_pred EECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 32 IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
|||+|++||.+|+.|++ .+.+|+|+|+...++
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccC
Confidence 89999999999999999 799999999986654
No 17
>PLN02661 Putative thiazole synthesis
Probab=98.71 E-value=1.8e-08 Score=72.63 Aligned_cols=64 Identities=27% Similarity=0.278 Sum_probs=43.2
Q ss_pred hcccccccccCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc
Q psy1704 7 EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA 71 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~ 71 (90)
|.-+..++.+.++.........||+|||+|++|+.+|+.|++. ++.+|+|+|+...+++..+..
T Consensus 72 e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG~~~g 135 (357)
T PLN02661 72 ESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGGAWLG 135 (357)
T ss_pred hhHhhccchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccceeeC
Confidence 3333334333333322333457999999999999999999862 489999999986655544433
No 18
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.69 E-value=5.9e-08 Score=68.88 Aligned_cols=48 Identities=21% Similarity=0.300 Sum_probs=38.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC--CCCccCcCeeeec
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEP 77 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~--~~~s~~~~g~~~~ 77 (90)
+||+|||||++|+++|+.|++ .|.+|+|+|+...+ ..++...++++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~~~~~~ss~~~~~~~~~ 50 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDLPHSRGSSHGQSRIIRK 50 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCCCCCCCCeeeee
Confidence 489999999999999999999 79999999997543 2344555566554
No 19
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.68 E-value=5.5e-08 Score=71.10 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
.+||+|||+|++|+++|+.|++ .|++|+|+|+...++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCC
Confidence 4799999999999999999999 899999999986654
No 20
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.68 E-value=2.2e-08 Score=68.09 Aligned_cols=42 Identities=33% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD 69 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~ 69 (90)
...|++|||+|++||.+|+.|++ .|++|+++|++..+++..|
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCcccc
Confidence 34699999999999999999999 7999999999866655434
No 21
>PRK10015 oxidoreductase; Provisional
Probab=98.67 E-value=6.9e-08 Score=70.72 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
.+||+|||+|++|+++|+.|++ .|.+|+|+|+...++.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAGC 42 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCc
Confidence 4799999999999999999999 8999999999866543
No 22
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.67 E-value=3.7e-08 Score=74.01 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=41.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
....||+|||+|.+|+++|+.+++ .|.+|+|+||....+++|..++|.+..
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi~a 64 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGIAA 64 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccceee
Confidence 345799999999999999999999 899999999987665556655554443
No 23
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.66 E-value=5.5e-08 Score=70.14 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..||+|||||++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 3689999999999999999999 8999999999864
No 24
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.66 E-value=7.2e-08 Score=66.57 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD 69 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~ 69 (90)
...|++|||+|++|+++|+.|++ .+.+|+|+|++...++..+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcccc
Confidence 35799999999999999999999 8999999999876554433
No 25
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.66 E-value=7.5e-08 Score=66.73 Aligned_cols=36 Identities=44% Similarity=0.600 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
.||+|||||++|+++|+.|++ .|.+|+|||+...+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHh--cccccccchhccccc
Confidence 589999999999999999999 899999999986543
No 26
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.65 E-value=8.1e-08 Score=70.77 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=44.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeeecCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFEPSP 79 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~~~~ 79 (90)
+..|++|||||+.|+++|+.|++..++++|+|+||.... ...|..++|+++...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~ 56 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGL 56 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccc
Confidence 347999999999999999999996666999999997654 456668888888753
No 27
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.65 E-value=4.8e-08 Score=72.62 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
.+|++|||+|+.||++|..|++ .|++|+|+||+..+++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG 40 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGG 40 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCc
Confidence 4699999999999999999999 9999999999876654
No 28
>PRK09126 hypothetical protein; Provisional
Probab=98.64 E-value=7e-08 Score=68.93 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
..||+|||||++|+++|+.|++ .|++|+|+|+...+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCcc
Confidence 5799999999999999999999 89999999997643
No 29
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.64 E-value=9e-08 Score=68.84 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...||+|||||++|+++|..|++ .|++|+|+|+.+.+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence 35799999999999999999999 89999999998543
No 30
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.63 E-value=7.3e-08 Score=70.20 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=39.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCCCCCccCcCeeeec
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
||+|||+|.+|+++|+.+++ .| .+|+|+||....++++..++|.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~ 48 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNA 48 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeec
Confidence 79999999999999999999 89 9999999987666666665555543
No 31
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.63 E-value=7.9e-08 Score=69.12 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..||+|||+|++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 4689999999999999999999 8999999999864
No 32
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=5.4e-08 Score=73.88 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..++|.++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~a 51 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGING 51 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeEE
Confidence 3599999999999999999999 899999999987666666666555543
No 33
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.62 E-value=6.5e-08 Score=73.99 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+||+|||||+.|..+|+.|++ .|++|+|+|++....++|..+.++++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtSsrss~lihg 119 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTSSRSTKLIHG 119 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcccchhhhhhh
Confidence 34799999999999999999999 899999999987776777777665544
No 34
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.62 E-value=1.1e-07 Score=69.87 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC--CCCCccCcCee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN--MDTTSDGAAGL 74 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~--~~~~s~~~~g~ 74 (90)
...||+|||+|++|+++|+.+++ .|.+|+|+||... .++.+..++|+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~ 51 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNL 51 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCce
Confidence 45799999999999999999999 8999999999863 34555555563
No 35
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.62 E-value=1e-07 Score=65.83 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
...||+|||+|++|+.+|+.|++ .|.+|+|+|+...+++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Gg 62 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGG 62 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCC
Confidence 45799999999999999999999 8999999999865543
No 36
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.61 E-value=6.2e-08 Score=69.86 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=36.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..++|.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~~~~ 47 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGGFDA 47 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSEEEE
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCceee
Confidence 79999999999999999999 899999999987655555555555444
No 37
>PRK07121 hypothetical protein; Validated
Probab=98.61 E-value=1.2e-07 Score=70.35 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=41.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
..+||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..++|.+.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~~ 67 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVIY 67 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEEE
Confidence 45799999999999999999999 89999999998766666666666653
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.61 E-value=1.6e-07 Score=70.11 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCe
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g 73 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+...+|
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~G 105 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASS 105 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCC
Confidence 45799999999999999999999 89999999998766554443333
No 39
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.60 E-value=9.4e-08 Score=68.28 Aligned_cols=37 Identities=27% Similarity=0.514 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+...||+|||+|++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence 345699999999999999999999 8999999999754
No 40
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.60 E-value=8.8e-08 Score=68.65 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=33.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
....||+|||||++|+++|+.|++ .|.+|+|+|+.+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCc
Confidence 345799999999999999999999 89999999997543
No 41
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.59 E-value=9.6e-08 Score=68.31 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+..+|+|||+|++|+++|..|++ .|.+|+|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence 34699999999999999999999 89999999997543
No 42
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.59 E-value=1e-07 Score=64.97 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+||+|||+|++|+++|+.|++ .|.+|+|+|+...+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCC
Confidence 489999999999999999999 89999999998654
No 43
>PRK07208 hypothetical protein; Provisional
Probab=98.59 E-value=1.1e-07 Score=69.82 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
...+|+|||||++||++|+.|.+ .|.+|+|+|+....++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCc
Confidence 45689999999999999999999 7999999999765443
No 44
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.58 E-value=1.6e-07 Score=69.43 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=34.4
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 22 ~~~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
++..+.+||+|||||++|+++|+.|++ .|++|+|+|+..
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 344566899999999999999999999 899999999974
No 45
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.58 E-value=8e-08 Score=71.28 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..||+|||+|.+|+.+|+.+++ .|. |+|+||....++++..++|.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~~ 49 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIAA 49 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCeee
Confidence 3699999999999999999998 787 99999986655566555554443
No 46
>PRK07045 putative monooxygenase; Reviewed
Probab=98.58 E-value=1e-07 Score=68.18 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...||+|||||++|+++|+.|++ .|++|+|+|+.+.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence 34699999999999999999999 89999999998654
No 47
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.57 E-value=1.1e-07 Score=71.03 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...||+|||||++|+++|+.|.+..++.+|+|+||...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 34699999999999999999998656889999999754
No 48
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.57 E-value=1e-07 Score=70.92 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=37.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCcc--CcCeeeec
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSD--GAAGLFEP 77 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~--~~~g~~~~ 77 (90)
.||+|||||++|+++|+.|++..++.+|+|+|+...+ ..+|. .++|..+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~ha 53 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHS 53 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCccccccc
Confidence 4899999999999999999996569999999996533 23333 45554444
No 49
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.56 E-value=1.7e-07 Score=69.48 Aligned_cols=36 Identities=36% Similarity=0.540 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||||++||++|..|.+ .|.+|+|+|++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCC
Confidence 45799999999999999999999 8999999999743
No 50
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.7e-07 Score=71.69 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++.|..++|.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~ 55 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCA 55 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccce
Confidence 45799999999999999999999 89999999998665555555555443
No 51
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.55 E-value=1.3e-07 Score=68.47 Aligned_cols=35 Identities=40% Similarity=0.674 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKFNMD 65 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~~~~ 65 (90)
+|+|||||++||++|+.|++ .| .+|+|+|++...+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK--KGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCCCCc
Confidence 69999999999999999999 66 8999999976543
No 52
>PRK07236 hypothetical protein; Provisional
Probab=98.55 E-value=1.7e-07 Score=67.24 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+..+|+|||||++|+++|+.|++ .|++|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 34799999999999999999999 8999999999753
No 53
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=67.13 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
..||+|||||++|+++|+.|.+ .|.+|+|+|+...+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 4699999999999999999999 89999999997554
No 54
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.54 E-value=1.8e-07 Score=71.40 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=40.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+..++|.+..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~a 77 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGINA 77 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCeeE
Confidence 45799999999999999999999 899999999987655555555555443
No 55
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.54 E-value=1.2e-07 Score=67.12 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
||+|||+|++|+++|+.|++ .|.+|+|+|+...+
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence 69999999999999999999 89999999998654
No 56
>PRK07233 hypothetical protein; Provisional
Probab=98.54 E-value=1.5e-07 Score=67.62 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
+|+|||+|++||++|+.|++ .|.+|+|+|+...+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCC
Confidence 58999999999999999999 8999999999876644
No 57
>PRK08013 oxidoreductase; Provisional
Probab=98.54 E-value=1.5e-07 Score=67.94 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..||+|||+|++|+++|+.|++ .|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 4699999999999999999999 8999999999754
No 58
>PRK06185 hypothetical protein; Provisional
Probab=98.54 E-value=1.6e-07 Score=67.53 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+||+|||||++|+++|+.|++ .|.+|+|+|+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 355799999999999999999999 899999999974
No 59
>PLN02576 protoporphyrinogen oxidase
Probab=98.54 E-value=2.4e-07 Score=68.27 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=34.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFNMD 65 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~~~ 65 (90)
....+|+|||||++||++|+.|.+ . |.+|+|+|++...+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCC
Confidence 344689999999999999999999 7 89999999986554
No 60
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.9e-07 Score=70.89 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
....||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+..++|.+.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~ 59 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIG 59 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcc
Confidence 445799999999999999999998 89999999998655555555555443
No 61
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.5e-07 Score=70.71 Aligned_cols=49 Identities=29% Similarity=0.305 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|.+|+++|+.+++ . .+|+|+||....+++|..++|.+..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~~ 55 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIAA 55 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCeee
Confidence 45799999999999999999988 5 7999999987655555555554433
No 62
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.53 E-value=1.2e-07 Score=71.50 Aligned_cols=49 Identities=31% Similarity=0.350 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
....||+|||+|.+|+++|+.+. .|.+|+|+||....++.+..++|.+.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg~s~~a~Ggi~ 55 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTSASDWAQGGIA 55 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCCchhhhcccce
Confidence 34579999999999999999985 48899999998766655655555443
No 63
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=1.6e-07 Score=70.99 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+..++|.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~ 52 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIA 52 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchh
Confidence 45799999999999999999998 89999999998655555555555544
No 64
>PRK06184 hypothetical protein; Provisional
Probab=98.53 E-value=2.1e-07 Score=69.06 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
..+|+|||+|++|+++|+.|++ .|.+|+|+|+.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 4699999999999999999999 89999999997543
No 65
>PRK08244 hypothetical protein; Provisional
Probab=98.53 E-value=2e-07 Score=68.97 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
..||+|||+|++|+++|..|++ .|.+|+|+|+.+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 3689999999999999999999 89999999997543
No 66
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.52 E-value=1.8e-07 Score=67.15 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 699999999999999999999 899999999864
No 67
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=1.9e-07 Score=70.64 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCC---CcEEEEccCCCCCCCccCcCeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKFNMDTTSDGAAGLF 75 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vie~~~~~~~~s~~~~g~~ 75 (90)
...||+|||+|.+|+++|+.+++ .| .+|+|+||....++.+..++|.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~ 54 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGT 54 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceeccccc
Confidence 45799999999999999999998 66 89999999876665555555444
No 68
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.52 E-value=1.5e-07 Score=67.66 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..||+|||||++|+++|+.|.+ .|.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 3689999999999999999999 899999999975
No 69
>PRK06847 hypothetical protein; Provisional
Probab=98.51 E-value=2.3e-07 Score=65.86 Aligned_cols=35 Identities=37% Similarity=0.506 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..+|+|||+|++|+++|+.|++ .|.+|+|+|+...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 4589999999999999999999 8999999999754
No 70
>PRK06126 hypothetical protein; Provisional
Probab=98.51 E-value=3.3e-07 Score=68.50 Aligned_cols=36 Identities=36% Similarity=0.537 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|+|||||++|+++|+.|++ .|.+|+|+|+...
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 45799999999999999999999 8999999998753
No 71
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.51 E-value=1.2e-07 Score=71.86 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=40.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..||+|||+|.+|+++|+.+++..++.+|+|+||....++.+..++|.++.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~ 54 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAA 54 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhh
Confidence 469999999999999999998732357999999987666666666565543
No 72
>PLN02268 probable polyamine oxidase
Probab=98.51 E-value=1.9e-07 Score=67.79 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
.+|+|||+|++||++|+.|.+ .|.+|+|+|++...++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCc
Confidence 379999999999999999999 8999999999765543
No 73
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.51 E-value=2.2e-07 Score=68.62 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=33.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
.|++|||+|++||++|..|++ .|.+|+|+|++..+++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence 589999999999999999999 8999999999876644
No 74
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.51 E-value=2.6e-07 Score=66.57 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence 3589999999999999999999 89999999997
No 75
>PLN02815 L-aspartate oxidase
Probab=98.51 E-value=1.3e-07 Score=71.97 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|.+||++|+.+++ .| +|+|+||....++++..++|.+..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi~a 76 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGVSA 76 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhccccc
Confidence 45799999999999999999998 78 899999987666666656554443
No 76
>PRK06753 hypothetical protein; Provisional
Probab=98.50 E-value=2e-07 Score=66.19 Aligned_cols=34 Identities=41% Similarity=0.571 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+|+|||||++|+++|+.|++ .|++|+|+|+.+.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence 79999999999999999999 89999999998654
No 77
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.50 E-value=2.6e-07 Score=66.41 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+||+|||||++|+++|+.|++ .|.+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 489999999999999999999 89999999997
No 78
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.50 E-value=1.4e-07 Score=71.58 Aligned_cols=51 Identities=29% Similarity=0.476 Sum_probs=40.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..||+|||+|.+|+.+|+.+++..++.+|+|+||....+..+..++|.++.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~ 53 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAA 53 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhh
Confidence 469999999999999999998732368999999987666666666565543
No 79
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.49 E-value=3e-07 Score=69.18 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=37.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC--CCCCCccCcCe
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAG 73 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~--~~~~~s~~~~g 73 (90)
...||+|||+|.+||++|+.+++ .|.+|+|+||.. ..++.+..++|
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~G 50 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLG 50 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCC
Confidence 45799999999999999999999 899999999987 34454444444
No 80
>PRK06370 mercuric reductase; Validated
Probab=98.49 E-value=3.1e-07 Score=67.54 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..+|++|||+|++|+.+|..+++ .|.+|+|+|+...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~ 39 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLL 39 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCcc
Confidence 45899999999999999999999 8999999998643
No 81
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.49 E-value=1.7e-07 Score=70.05 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=38.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..||+|||+|.+|+++|+.+++ +.+|+|+||....++.|..++|.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi~~ 50 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGIAA 50 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCcccee
Confidence 4699999999999999999865 78999999987666666555554443
No 82
>KOG1399|consensus
Probab=98.49 E-value=3.8e-07 Score=67.59 Aligned_cols=44 Identities=36% Similarity=0.568 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 78 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~ 78 (90)
+..+++|||||++||++|..|.+ .|.+++++|+. ...||+|...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~-------~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERT-------DDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEec-------CCccceEeec
Confidence 45699999999999999999999 89999999986 4467777764
No 83
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.49 E-value=2.1e-07 Score=66.51 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+||+|||+|++|+++|..|++ .|.+|+|+|+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 44799999999999999999999 899999999874
No 84
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.49 E-value=3e-07 Score=65.81 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+||+|||||++|+++|..|++..++++|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 589999999999999999998212499999999754
No 85
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.49 E-value=2e-07 Score=66.29 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~ 64 (90)
||+|||||++|+++|+.|++ .| ++|+|+|+...+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCcc
Confidence 69999999999999999999 89 999999997554
No 86
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.48 E-value=3.3e-07 Score=68.66 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=35.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc-CCCCCCCccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDG 70 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~-~~~~~~~s~~ 70 (90)
...||+|||||++|+++|+.|++..++.+|+|+|+ +.....+|..
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~ 50 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNE 50 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCC
Confidence 34699999999999999999998556899999999 5433444433
No 87
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.48 E-value=2.5e-07 Score=67.40 Aligned_cols=38 Identities=29% Similarity=0.563 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCC--CCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~--g~~v~vie~~~~~~ 65 (90)
.||+|||||++||++|+.|.++.+ |.+|+|+|++...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 589999999999999999998322 89999999976543
No 88
>KOG0029|consensus
Probab=98.48 E-value=3e-07 Score=68.97 Aligned_cols=38 Identities=39% Similarity=0.594 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...++|+|||||++||++|..|.+ .|.+|+|+|.+.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCc
Confidence 345799999999999999999999 89999999987543
No 89
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.48 E-value=2.2e-07 Score=66.25 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCC---CCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFP---NCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~---g~~v~vie~~ 61 (90)
+..||+|||+|++|+++|+.|++ . |.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCC
Confidence 34699999999999999999998 7 9999999995
No 90
>PRK07190 hypothetical protein; Provisional
Probab=98.47 E-value=3.2e-07 Score=68.27 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...||+|||+|++|+++|+.|++ .|.+|+|+|+.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 34699999999999999999999 89999999998654
No 91
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.47 E-value=2.3e-07 Score=68.03 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=27.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+||+|||||++||.+|+.+++ .|.+|+|+|++...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCccc
Confidence 489999999999999999999 89999999998665
No 92
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.47 E-value=2.8e-07 Score=68.28 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=33.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
+|++|||+|+.||++|..|++ .|.+|+|+||+..+++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCC
Confidence 489999999999999999999 8999999999877654
No 93
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.47 E-value=2.1e-07 Score=67.83 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
+.+||+|||+|++|++||..+.+ .|.+|+|||+.+..+.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccc
Confidence 34799999999999999999999 8999999999876543
No 94
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.47 E-value=2.7e-07 Score=66.55 Aligned_cols=33 Identities=33% Similarity=0.630 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..||+|||||++|+++|+.|.+ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 4699999999999999999999 89999999985
No 95
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.47 E-value=3.8e-07 Score=66.83 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
..+|++|||+|++|+.+|..|++ .|.+|+|+|+....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccc
Confidence 45799999999999999999999 89999999986433
No 96
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.47 E-value=3.9e-07 Score=65.67 Aligned_cols=34 Identities=41% Similarity=0.516 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.+|+|||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 689999999999999999999 8999999999753
No 97
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.46 E-value=3e-07 Score=73.22 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..++|+|||+|++||++|+.|++ .|++|+|||+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCC
Confidence 45799999999999999999999 899999999864
No 98
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.46 E-value=4.5e-07 Score=68.59 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=40.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~ 75 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..++|++
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~s~g~~ 55 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAFSGGVL 55 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccceeCcEe
Confidence 45799999999999999999999 8999999999876666555556643
No 99
>PRK06834 hypothetical protein; Provisional
Probab=98.46 E-value=4.7e-07 Score=67.41 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...||+|||+|++|+++|+.|++ .|.+|+|+|+...+
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~ 38 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQ 38 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 34799999999999999999999 89999999997543
No 100
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.45 E-value=3.6e-07 Score=68.84 Aligned_cols=44 Identities=30% Similarity=0.492 Sum_probs=35.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~ 74 (90)
||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+...+|.
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~Gg 44 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQGG 44 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhccC
Confidence 79999999999999999999 899999999986554444444443
No 101
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.45 E-value=4.6e-07 Score=67.73 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-C-eeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-A-GLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~-g~~~~ 77 (90)
..+||+|||+| +|+++|+.+++ .|.+|+|+||....++++... + |++.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~ 56 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFP 56 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccC
Confidence 35799999999 99999999999 899999999987655544433 3 35554
No 102
>KOG3923|consensus
Probab=98.45 E-value=2.9e-07 Score=65.17 Aligned_cols=55 Identities=53% Similarity=0.771 Sum_probs=47.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHh-----hCCCCcEEEEccCCCCCCCccCcCeeeecCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQR-----RFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF 81 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~-----~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~~ 81 (90)
..+|+|||+|..|+++|+.+.+ ..+..+|++++..+.+...|+.++|++.|....
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~ 62 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD 62 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC
Confidence 3589999999999999988876 235679999999999999999999999995433
No 103
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=4e-07 Score=68.91 Aligned_cols=50 Identities=34% Similarity=0.567 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc-CcCeeee
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD-GAAGLFE 76 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~-~~~g~~~ 76 (90)
..||+|||+|.+|+++|+.+++..++.+|+|+||....++.+. ..+|+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a 53 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAA 53 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhh
Confidence 4699999999999999999997323589999999865444344 4444433
No 104
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=3.6e-07 Score=69.53 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=40.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+..+.|.+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~a 60 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGISA 60 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCccc
Confidence 45799999999999999999999 899999999986555555555555443
No 105
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=3e-07 Score=69.08 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~~~ 76 (90)
...||+|||+|.+|+++|+.+ + .|.+|+|+||... .++++..++|.++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~~ 54 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGYN 54 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceEE
Confidence 346999999999999999999 7 7999999999754 2334444455443
No 106
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.44 E-value=4e-07 Score=67.42 Aligned_cols=35 Identities=43% Similarity=0.661 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+++|||||++||++|++|++..+..+++|+|++..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 69999999999999999999655599999998643
No 107
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.44 E-value=6.4e-07 Score=67.61 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=39.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-Ceeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~g~~~~ 77 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..+ ++++.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~~~g~~~~~ 56 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTARSGGGVWIP 56 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccccCceeecC
Confidence 45799999999999999999999 899999999986655544444 444433
No 108
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.44 E-value=3.4e-07 Score=70.20 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=40.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|.+|+.+|+.+++ .|.+|+|+||....++.+..++|.++.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~a 98 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGINA 98 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCcee
Confidence 34699999999999999999998 899999999987665555555555443
No 109
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.43 E-value=3.2e-07 Score=67.88 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.9
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
|+|||+|++||++|..|++ .|.+|+|+|++..+++
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcC
Confidence 5899999999999999999 8999999999877654
No 110
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.42 E-value=5.7e-07 Score=67.34 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+||+|||||+.|+++|+.|++..+..+|+|+|+..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 3479999999999999999999843447999999974
No 111
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=4.8e-07 Score=68.72 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=39.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~ 74 (90)
....||+|||+|.+|+++|+.+++ .|.+|+|+||....++++..++|.
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~~s~G~ 56 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTALSGGG 56 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHHHhCCC
Confidence 345799999999999999999999 899999999987655544444443
No 112
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.41 E-value=2.8e-07 Score=70.86 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
..+||+|||+|.+|+.+|+.+++ .|.+|+|+||.+..++.|..++|.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~GGi~ 52 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQGGMQ 52 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhhhHH
Confidence 35799999999999999999999 89999999998765555555544443
No 113
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=5.2e-07 Score=65.93 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..|++ .|.+|+|+|+..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCC
Confidence 4799999999999999999999 899999999864
No 114
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=4.7e-07 Score=68.64 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
...||+|||+|.+|+++|+.+++ . .+|+|+||....++++..++|.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~ 51 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMC 51 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchh
Confidence 35799999999999999999987 5 899999998665555554554443
No 115
>PRK05868 hypothetical protein; Validated
Probab=98.40 E-value=5.8e-07 Score=64.55 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
.+|+|||+|++|+++|+.|++ .|++|+|+|+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence 489999999999999999999 89999999997543
No 116
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=3.6e-07 Score=69.44 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=39.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
..||+|||+|.+|+++|+.+++ .|.+|+|+||....++.+..++|.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi~ 54 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGIT 54 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhHh
Confidence 4699999999999999999998 89999999998655555555555543
No 117
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=9.1e-07 Score=63.35 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence 489999999999999999999 899999999863
No 118
>PRK07588 hypothetical protein; Provisional
Probab=98.39 E-value=5.4e-07 Score=64.58 Aligned_cols=33 Identities=42% Similarity=0.447 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|+|||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCceEEEeCCCC
Confidence 79999999999999999999 8999999999754
No 119
>PRK07538 hypothetical protein; Provisional
Probab=98.39 E-value=5.5e-07 Score=65.16 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
||+|||||++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCc
Confidence 79999999999999999999 8999999999754
No 120
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.38 E-value=4.2e-07 Score=67.19 Aligned_cols=46 Identities=33% Similarity=0.478 Sum_probs=35.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
.||+|||+|.+|+++|+.+++ .|.+|+|+||... ..++....|.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~-~~~s~~a~ggi~ 47 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK-KSNSYLAQAGIA 47 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC-CCCcHHHcCCcc
Confidence 589999999999999999999 8999999999753 223333444443
No 121
>PRK11445 putative oxidoreductase; Provisional
Probab=98.37 E-value=7.6e-07 Score=63.40 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+||+|||+|++|+++|+.|++ . .+|+|+|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCc
Confidence 589999999999999999999 7 99999998753
No 122
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=9.2e-07 Score=65.13 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence 4799999999999999999999 899999999863
No 123
>PRK12839 hypothetical protein; Provisional
Probab=98.37 E-value=1.3e-06 Score=66.31 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcC-eeeec
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA-GLFEP 77 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~-g~~~~ 77 (90)
....||+|||+|.+|+++|+.+.+ .|.+|+|+||....++.+...+ +++.+
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~~~~~ 57 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAWSGGWMWTP 57 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccccCCeeecC
Confidence 346799999999999999999999 8999999999865554444444 44444
No 124
>PRK06116 glutathione reductase; Validated
Probab=98.37 E-value=7.4e-07 Score=65.25 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~ 36 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK 36 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence 4799999999999999999999 89999999986
No 125
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.37 E-value=1.2e-06 Score=67.11 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKFN 63 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~~~ 63 (90)
....||+|||||++||++|+.|++ . |++|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCC
Confidence 345799999999999999999998 5 899999999754
No 126
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.36 E-value=7.2e-07 Score=58.25 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=26.2
Q ss_pred EEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCC
Q psy1704 31 AILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDT 66 (90)
Q Consensus 31 ~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~ 66 (90)
+|||||++||++|..|.+ .|.+ ++|+|++..+++
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGG 35 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTT
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCC
Confidence 699999999999999999 7888 999999865543
No 127
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.36 E-value=6.9e-07 Score=62.83 Aligned_cols=32 Identities=41% Similarity=0.610 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|+|||+|++|+++|+.|++ .|++|+||||..
T Consensus 3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCC
Confidence 69999999999999999999 999999999963
No 128
>KOG2614|consensus
Probab=98.36 E-value=8.7e-07 Score=64.85 Aligned_cols=38 Identities=42% Similarity=0.643 Sum_probs=34.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTT 67 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~ 67 (90)
.+|+|||||++|+++|..|.+ .|++|+|+|+.+.+++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccccccC
Confidence 589999999999999999999 89999999998776554
No 129
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.36 E-value=8.6e-07 Score=64.77 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=32.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
+|+|||+|++||++|+.|.+ .|.+|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCC
Confidence 58999999999999999999 8999999999866544
No 130
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.35 E-value=8.2e-07 Score=66.97 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
++|+|||||++||+++..|.+ .|.+++++|++. ..||+|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~-------~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSD-------DIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSS-------SSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCC-------CCCccCee
Confidence 589999999999999999999 899999999864 35666654
No 131
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.35 E-value=8e-07 Score=65.08 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
||+|||||++|+++|+.+++ .|.+|+|+|+....++
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCC
Confidence 79999999999999999999 8999999999866544
No 132
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.35 E-value=1e-06 Score=66.42 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=44.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+|++|||||+.|+.+|..++. .|++|+++|++....++|..+.++++-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSsrstkLiHG 60 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSSRSTKLIHG 60 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccCccccCccc
Confidence 56899999999999999999999 899999999998888888878777765
No 133
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.34 E-value=1e-06 Score=66.07 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...||+|||+|++|+++|+.|.+ .|.+|+|+|+...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 45799999999999999999999 8999999999753
No 134
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=1.2e-06 Score=64.77 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=34.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDT 66 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~ 66 (90)
....|++|||||.+||++|++|++ .+.+ ++|+||+...++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCC
Confidence 355799999999999999999999 7887 999999854443
No 135
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.34 E-value=1.3e-06 Score=65.46 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+|+|||+|++|+.+|..|+++..+.+|+|||+.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 457899999999999999999864468999999997544
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.33 E-value=5.9e-07 Score=65.95 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~ 76 (90)
..+||+|||+|.+|+++|+.+ . .|.+|+|+||....++.+..++|.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~s~~a~ggi~ 50 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECNTYLAQGGIS 50 (433)
T ss_pred ccccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCchHHHhHhhe
Confidence 347999999999999999997 4 58999999998766665665555444
No 137
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.33 E-value=1.1e-06 Score=64.67 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~ 35 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKK 35 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccc
Confidence 4799999999999999999999 899999999863
No 138
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.33 E-value=1.2e-06 Score=66.17 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~ 75 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+|+....++++..++|.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~ 52 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVL 52 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceeccee
Confidence 35799999999999999999999 8999999999865555555555443
No 139
>PLN02568 polyamine oxidase
Probab=98.33 E-value=1.2e-06 Score=66.19 Aligned_cols=38 Identities=26% Similarity=0.497 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCC-----CcEEEEccCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKFNMD 65 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-----~~v~vie~~~~~~ 65 (90)
...+|+|||+|++||++|..|++ .| .+|+|+|++...+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCCCcC
Confidence 34689999999999999999997 55 8999999976543
No 140
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.33 E-value=9.9e-07 Score=63.02 Aligned_cols=33 Identities=39% Similarity=0.618 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
||+|||+|++|+.+|+.|++ .|.+|+|+|+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCC
Confidence 79999999999999999998 8999999998743
No 141
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.33 E-value=1e-06 Score=63.38 Aligned_cols=36 Identities=39% Similarity=0.414 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
||+|||+|++|+++|+.|.+..++.+|+|+|+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999332289999999987543
No 142
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.32 E-value=1.2e-06 Score=65.54 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...||+|||+|++|+.+|..|.+ .|.+|+|+|+...+
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~ 45 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTL 45 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 45799999999999999999999 89999999997543
No 143
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.32 E-value=9.7e-07 Score=64.02 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.||+|||+|++|+++|+.|++ .|.+|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence 389999999999999999999 8999999998743
No 144
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.32 E-value=1e-06 Score=64.55 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhC----CCCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRF----PNCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~----~g~~v~vie~~~~~~ 65 (90)
++|+|||||++||++|+.|.+.. .+.+|+|+|++...+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 37999999999999999998721 147899999976543
No 145
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=2.1e-06 Score=65.09 Aligned_cols=51 Identities=16% Similarity=0.385 Sum_probs=40.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCe-eeec
Q psy1704 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP 77 (90)
Q Consensus 24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g-~~~~ 77 (90)
....+||+|||+| +|+++|+.+++ .|.+|+|+||....++++..++| +|.+
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~~gG~~~~~ 64 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTARSGGAFWLP 64 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccCcCCCEecC
Confidence 3456899999999 89999999999 89999999998666665555544 4443
No 146
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.31 E-value=1.2e-06 Score=60.05 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|++|||+|++|+.+|..|++ .+.+|+|+|+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC
Confidence 489999999999999999998 799999999864
No 147
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.30 E-value=1.1e-06 Score=64.10 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence 4799999999999999999999 899999999874
No 148
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=1e-06 Score=67.68 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGL 74 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~ 74 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||...+ ++.+..++|.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GG 81 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGG 81 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhc
Confidence 45799999999999999999998 89999999986544 2344444333
No 149
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=1.6e-06 Score=63.91 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|++|+.+|..+++ .|.+|+|+|+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence 35799999999999999999999 899999999863
No 150
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.29 E-value=1.5e-06 Score=56.54 Aligned_cols=32 Identities=47% Similarity=0.709 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
||+|||+|++|+.+|..|.+ ++.+++++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEeccc
Confidence 69999999999999999998 899999998753
No 151
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.29 E-value=1.5e-06 Score=62.81 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~ 63 (90)
+|+|||||++||++|+.|++ .| .+|+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 69999999999999999998 77 69999999754
No 152
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.29 E-value=1.4e-06 Score=63.91 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
++|++|||+|++|+.+|..+++ .|.+|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC
Confidence 4799999999999999999999 89999999985
No 153
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=1.5e-06 Score=64.10 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence 4799999999999999999999 89999999974
No 154
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.29 E-value=8e-07 Score=66.52 Aligned_cols=48 Identities=27% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC-CCCccCcCeeee
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLFE 76 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~-~~~s~~~~g~~~ 76 (90)
....||+|||+|.+|+++|+.++. .+|+|+||...+ ++++..++|.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi~ 55 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGIA 55 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhccc
Confidence 345799999999999999998863 499999998753 344444444443
No 155
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.28 E-value=2e-06 Score=65.31 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=41.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+||+|||+|.+||.+|..+++ .+.+|+|+||.+..++++..++|.++.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a 54 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINA 54 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhcccccc
Confidence 45799999999999999999999 889999999987666655555555444
No 156
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.3e-06 Score=65.18 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=32.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
++|+|+|||++||++|+.|++ .|.+|+|+|.+...+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccC
Confidence 379999999999999999999 899999999986543
No 157
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.28 E-value=8.9e-07 Score=66.11 Aligned_cols=56 Identities=27% Similarity=0.260 Sum_probs=47.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeecCCCCCCCCcc
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLE 87 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~~~~~~~~~~~ 87 (90)
||+|||+|.+||.+|+.|.+ ..+|+|+.|......+|+.++|.+.......|+++.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~---~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~ 64 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP---SFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPEL 64 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC---CCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHH
Confidence 89999999999999999987 389999999877778889999999887666665543
No 158
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.28 E-value=1.5e-06 Score=69.70 Aligned_cols=36 Identities=47% Similarity=0.585 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 34699999999999999999999 8999999998743
No 159
>PRK12831 putative oxidoreductase; Provisional
Probab=98.28 E-value=2.2e-06 Score=63.51 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...++|+|||+|++|+++|+.|++ .|.+|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence 345799999999999999999999 899999999864
No 160
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=1.8e-06 Score=65.15 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+||+|||||++|+.+|..|++ .+.+|+|+|++.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCC
Confidence 4799999999999999999999 899999999863
No 161
>PLN02463 lycopene beta cyclase
Probab=98.27 E-value=1.7e-06 Score=63.96 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...||+|||||++|+++|..|++ .|.+|+|+|+.+
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCc
Confidence 34799999999999999999999 899999999864
No 162
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=2.1e-06 Score=63.52 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|+.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~ 37 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYS 37 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 4799999999999999999999 899999999864
No 163
>PLN02985 squalene monooxygenase
Probab=98.26 E-value=1.7e-06 Score=64.90 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...||+|||||++|+++|+.|++ .|.+|+|+|+..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 45799999999999999999999 899999999864
No 164
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.26 E-value=2e-06 Score=62.99 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|+.+|..|.+ .|.+|+|+|++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4799999999999999999999 89999999984
No 165
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.25 E-value=2e-06 Score=62.96 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|++|||+|++|+.+|..|++ .|.+|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC
Confidence 699999999999999999999 89999999984
No 166
>PRK14694 putative mercuric reductase; Provisional
Probab=98.25 E-value=2.6e-06 Score=62.83 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|++|+.+|..|++ .|.+|+|||++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccc
Confidence 45799999999999999999999 899999999864
No 167
>PRK06996 hypothetical protein; Provisional
Probab=98.25 E-value=2.8e-06 Score=61.30 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=31.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCC----CcEEEEccCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFN 63 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g----~~v~vie~~~~ 63 (90)
.+..||+|||||++|+++|+.|++ .| ++|+|+|+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCCC
Confidence 345799999999999999999998 55 57999999743
No 168
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.25 E-value=1.7e-06 Score=66.88 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+..+|+|||||++|+++|+.|++ .|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 44799999999999999999999 899999999964
No 169
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=1.2e-06 Score=66.52 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...||+|||||++|+++|+.|++ .|.+|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 35799999999999999999999 899999999974
No 170
>KOG2820|consensus
Probab=98.24 E-value=2.2e-06 Score=61.73 Aligned_cols=53 Identities=28% Similarity=0.408 Sum_probs=43.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC--CCCccCcCeeeecCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSP 79 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~--~~~s~~~~g~~~~~~ 79 (90)
....+++|||+|+-|+++|+.|++ .|.++.++|+.+.| +++|....-++++.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y 59 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAY 59 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhh
Confidence 345799999999999999999999 88999999998776 566666666777743
No 171
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=2.4e-06 Score=62.75 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|++|+.+|..+++ .|.+|+|+|+..
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~ 37 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK 37 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc
Confidence 4799999999999999999999 899999999864
No 172
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.24 E-value=2.3e-06 Score=69.45 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=39.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCc-Ceeee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFE 76 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~-~g~~~ 76 (90)
...||+|||+|.+|+++|+.+++ .|.+|+|+||....++++... +|++.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi~~ 457 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGING 457 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhccccccc
Confidence 45799999999999999999999 899999999987665555433 44443
No 173
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=4.2e-06 Score=63.49 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeee
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~ 75 (90)
....|++|||+|.+|+.+|+.+.+ .|.+|+|+||....++++..++|.+
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~ 62 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTT 62 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCcee
Confidence 345799999999999999999998 8999999999876666665555543
No 174
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.23 E-value=1.8e-06 Score=63.12 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~ 62 (90)
+||+|||||++|+++|+.|++.. .|++|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 48999999999999999998621 389999999953
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.23 E-value=2.1e-06 Score=63.06 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|++|||+|++|+.+|..+++ .|.+|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc
Confidence 489999999999999999999 899999999864
No 176
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.22 E-value=3.2e-06 Score=64.85 Aligned_cols=36 Identities=42% Similarity=0.497 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|+|||+|++||++|..|++ .|.+|+|||+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 45799999999999999999999 8999999998643
No 177
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.22 E-value=3.7e-06 Score=63.85 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCee
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~ 74 (90)
...|++|||+|.+|+++|+.+.+ .|.+|+||||....++.+...+|.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~ 57 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAWSGGW 57 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccccCce
Confidence 45799999999999999999999 899999999986555555555554
No 178
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.22 E-value=2.7e-06 Score=61.87 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
.|++|||||++|+++|..|.+ .|.+|+|+|++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCC
Confidence 489999999999999999998 79999999996543
No 179
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.22 E-value=2.6e-06 Score=68.28 Aligned_cols=36 Identities=39% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||+|++||++|..|++ .|.+|+|||+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCC
Confidence 35799999999999999999999 8999999998643
No 180
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.21 E-value=1.7e-06 Score=65.98 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCC--CCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~--g~~v~vie~~~~~~ 65 (90)
..||+|||+|.+|+++|+.+++ . |.+|+|+||....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCcCC
Confidence 4799999999999999999988 6 89999999986543
No 181
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.21 E-value=2.8e-06 Score=62.85 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.||+|||||++|+.+|+.|++ .|.+|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCc
Confidence 589999999999999999999 8999999997643
No 182
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.20 E-value=2.8e-06 Score=65.09 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred cEEEECCCHHHHHHHHHHH----hhCCCCcEEEEccCCCCCCCccCcCe
Q psy1704 29 KVAILGAGIIGLSTALELQ----RRFPNCDVTVIADKFNMDTTSDGAAG 73 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~----~~~~g~~v~vie~~~~~~~~s~~~~g 73 (90)
||+|||+|.+||++|+.++ + .|.+|+|+||....+..+ .++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s-~A~G 46 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGA-VAQG 46 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCc-cccc
Confidence 7999999999999999997 5 689999999986544444 3455
No 183
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.20 E-value=4.2e-06 Score=65.13 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..++|+|||+|++|+++|..|++ .|.+|+|||+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 45799999999999999999999 899999999863
No 184
>KOG2852|consensus
Probab=98.20 E-value=6.8e-07 Score=63.44 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=43.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCC------CcEEEEccCCCCCCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPN------CDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g------~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+|+|+|||+.|.++||+|.+ ++ .+|++||+....+++|..++|++..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~--~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~ 64 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTE--HPSFKKGELDITIFESKEIAGGASGKASGFLAK 64 (380)
T ss_pred ceEEEEECCCceeeeeehhhhc--CCccCCCceeEEEEeecccccccccccchhhHh
Confidence 3699999999999999999998 43 7899999998888999999998874
No 185
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.20 E-value=4.3e-06 Score=61.60 Aligned_cols=36 Identities=39% Similarity=0.561 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||+|++|+.+|..|++ .|.+|+|+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 45799999999999999999999 8999999998643
No 186
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.18 E-value=3.2e-06 Score=62.74 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
+++|||+|++|+++|+.|.+ .|.+|+|+|++...+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCC
Confidence 58999999999999999999 899999999986554
No 187
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.16 E-value=7.3e-06 Score=61.60 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
...+|+|||+|++|+.+|..|..+ .+.+|+|||+.+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCc
Confidence 346899999999999999977532 589999999986543
No 188
>PTZ00058 glutathione reductase; Provisional
Probab=98.16 E-value=6.8e-06 Score=62.41 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|++|..+|..+++ .|.+|+++|++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence 45799999999999999999999 899999999864
No 189
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.16 E-value=4e-06 Score=67.26 Aligned_cols=36 Identities=44% Similarity=0.550 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||+|++|+++|+.|++ .|.+|+|+|+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccc
Confidence 45799999999999999999999 8999999998754
No 190
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.15 E-value=7.1e-06 Score=64.61 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
...+|+|||+|++|+.+|+.|.+ .|.+|+|+|++...+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCC
Confidence 45799999999999999999999 899999999986553
No 191
>PLN02697 lycopene epsilon cyclase
Probab=98.14 E-value=7.1e-06 Score=61.98 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..||+|||+|++|+++|..|++ .|++|+++|+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~ 140 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPD 140 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEecCc
Confidence 4799999999999999999999 89999999985
No 192
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.14 E-value=3.1e-06 Score=61.49 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=30.4
Q ss_pred EEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 31 ~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
+|||+|++|+++|+.+++ .|.+|+|+|+....+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccc
Confidence 599999999999999999 8999999999866544
No 193
>PRK10262 thioredoxin reductase; Provisional
Probab=98.14 E-value=5.9e-06 Score=57.96 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...|++|||+|++|+.+|..+.+ .+.+++++|+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEee
Confidence 35799999999999999999999 78899999964
No 194
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.5e-06 Score=58.73 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~ 62 (90)
..|++|||+|++||++|.++.+ .+++ ++|+|+..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~ 37 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGE 37 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCC
Confidence 4699999999999999999999 8888 66677653
No 195
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.13 E-value=6.9e-06 Score=60.80 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence 44699999999999999999999 8999999998754
No 196
>PLN02612 phytoene desaturase
Probab=98.13 E-value=7.9e-06 Score=61.96 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+|+|||+|++|+++|+.|.+ .|.+|+|+|+....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCC
Confidence 34689999999999999999999 89999999997554
No 197
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.12 E-value=9.3e-06 Score=61.88 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTT 67 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~~~~ 67 (90)
...+++|||+|++||++|++|.+.. +|.+|+|+|+...+++.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 3469999999999999999998832 36899999998766543
No 198
>PLN02676 polyamine oxidase
Probab=98.11 E-value=7.5e-06 Score=61.07 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~~~~ 66 (90)
...||+|||+|++||++|+.|.+ .|. +|+|+|++...++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCC
Confidence 35699999999999999999999 787 6999999865443
No 199
>PRK13748 putative mercuric reductase; Provisional
Probab=98.10 E-value=6e-06 Score=61.94 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+|++|||+|++|+.+|..+++ .|.+|+|+|++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC
Confidence 35799999999999999999999 89999999987
No 200
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=7.4e-06 Score=60.59 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~ 60 (90)
.+|++|||+|++|+.+|.++++ .|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh--CCCeEEEEec
Confidence 4799999999999999999999 8999999998
No 201
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.10 E-value=9.4e-06 Score=62.45 Aligned_cols=36 Identities=44% Similarity=0.565 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||+|++|+.+|+.|++ .|.+|+|+|+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 34699999999999999999999 8999999998743
No 202
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.09 E-value=5e-06 Score=59.97 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
||+|||||++|+++|+.|.+..++.+|+++|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7999999999999999999732499999999974
No 203
>KOG2665|consensus
Probab=98.09 E-value=5.2e-06 Score=59.82 Aligned_cols=53 Identities=26% Similarity=0.445 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC------CCCCccCcCeeeec
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN------MDTTSDGAAGLFEP 77 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~------~~~~s~~~~g~~~~ 77 (90)
...+|++|||+|++|++.|..|.-++++++|.|+|++.. ..++....+|++++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~ 104 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYK 104 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeC
Confidence 355899999999999999999987668999999998632 23333445555555
No 204
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.08 E-value=3.9e-06 Score=64.06 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=34.1
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC-CCCCccCcCee
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGL 74 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~-~~~~s~~~~g~ 74 (90)
|+|||+|.+|+++|+.+++ .|.+|+|+||... .++.+..++|.
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~Gg 44 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQGG 44 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhhh
Confidence 6899999999999999999 8999999999863 33344444443
No 205
>PRK08275 putative oxidoreductase; Provisional
Probab=98.08 E-value=6.6e-06 Score=62.07 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...||+|||+|.+|+++|+.+++..+|.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34799999999999999999987323789999999865
No 206
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.07 E-value=8e-06 Score=60.50 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
..+||+|||+|.+|+.+|..|++ .|.+|+++|++...++
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCc
Confidence 45899999999999999999999 8999999999866544
No 207
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.07 E-value=5e-06 Score=57.42 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~ 63 (90)
+|++|||+|.+|..+|.+|++ .+ .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~--~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE--AGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT--STTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhh--CCCCcEEEEEcccc
Confidence 489999999999999999998 55 69999999754
No 208
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.07 E-value=1e-05 Score=59.58 Aligned_cols=36 Identities=39% Similarity=0.597 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..++|+|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCC
Confidence 34699999999999999999999 8999999998743
No 209
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.07 E-value=7e-06 Score=65.74 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...++|+|||+|++|+.+|+.|++ .|.+|+++|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 356799999999999999999999 89999999985
No 210
>KOG1276|consensus
Probab=98.07 E-value=7.5e-06 Score=60.55 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+..+++|+|||++||++||+|+++.+...|+++|+.++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 45699999999999999999999766677888998744
No 211
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.06 E-value=7.4e-06 Score=65.56 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
.+||+|||+|++||++|+.+++ .|.+|+|+|++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCC
Confidence 4799999999999999999999 89999999987543
No 212
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=9.6e-06 Score=59.72 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+++|||+|++|+.+|..+++ .|.+|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcc
Confidence 79999999999999999999 8999999998743
No 213
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.05 E-value=1.4e-05 Score=56.94 Aligned_cols=37 Identities=35% Similarity=0.349 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+|+|||+|++|+.+|..|++ .+.+|+++|+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 45699999999999999999999 89999999987543
No 214
>PLN02507 glutathione reductase
Probab=98.05 E-value=1.2e-05 Score=60.08 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~ 60 (90)
.++|++|||+|++|+.+|..+.+ .|.+|+|+|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence 35799999999999999999999 8999999997
No 215
>KOG2960|consensus
Probab=98.04 E-value=2.1e-07 Score=63.84 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=43.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
.||+|||+|-+||++||.+.++.++++|.+||+.-.|++..|..+-++..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSA 126 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSA 126 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhh
Confidence 59999999999999999998766899999999988888877877666544
No 216
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.04 E-value=9.8e-06 Score=59.99 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=35.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTT 67 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~ 67 (90)
....||+|||+|.+||.+|+.|.+ .|++|+|+|.+...++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCce
Confidence 345799999999999999999999 99999999988765543
No 217
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.03 E-value=8.5e-06 Score=62.52 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+||+|||||++|+.+|+.+++ .|.+|+++|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH--cCCcEEEEecc
Confidence 35799999999999999999999 89999999986
No 218
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.03 E-value=1.7e-05 Score=60.86 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|+|||+|++||.+|..|++ .|.+|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 45799999999999999999999 8999999998753
No 219
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.03 E-value=1.6e-05 Score=45.45 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+++|||+|+.|+.+|..|.+ .+.+|+++++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchh
Confidence 58999999999999999999 89999999987544
No 220
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.02 E-value=1.1e-05 Score=59.53 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|++|||+|.+|+.+|+.+++ .|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 4799999999999999999999 899999999864
No 221
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.02 E-value=1.9e-05 Score=58.57 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+++|||+|++|+.+|..|++ .|.+|+++|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCC
Confidence 45799999999999999999999 7999999998743
No 222
>KOG2415|consensus
Probab=98.02 E-value=1.1e-05 Score=60.06 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=38.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhh----CCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~----~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...||+|||+|++||++|++|.|. ...++|+|+||....++. ..++.++.|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh-tlSGaviep 129 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH-TLSGAVIEP 129 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc-eecceeecc
Confidence 447999999999999999999763 246789999998655553 334555555
No 223
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.02 E-value=1e-05 Score=63.25 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|+|||||++|+++|+.|++..+|++|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 79999999999999999998433899999999753
No 224
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.01 E-value=1.2e-05 Score=58.60 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+++|||+|++|+.+|..|++..++.+|+|||+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 79999999999999999988444569999999754
No 225
>PLN02487 zeta-carotene desaturase
Probab=97.99 E-value=1.4e-05 Score=60.91 Aligned_cols=36 Identities=39% Similarity=0.573 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
.+|+|||+|++|+++|+.|.+ .|.+|+|+|+.+..+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~g 111 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIG 111 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCC
Confidence 599999999999999999999 899999999986554
No 226
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.98 E-value=2.1e-05 Score=59.40 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|+|||+|++||.+|..|++ .|.+|+++|+...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 45699999999999999999999 7999999998743
No 227
>PRK14727 putative mercuric reductase; Provisional
Probab=97.97 E-value=2e-05 Score=58.48 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|++|+.+|..+++ .|.+|+++|+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence 45799999999999999999999 899999999863
No 228
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.97 E-value=1.4e-05 Score=59.80 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+|++|||||++|+.+|.++++ .|++++|+++.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~ 243 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER 243 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence 45799999999999999999999 89999999864
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.97 E-value=1.3e-05 Score=59.90 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+|++|||||++|+++|..+++ .|.+|+|+++.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~ 244 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAER 244 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence 45799999999999999999999 89999999753
No 230
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.97 E-value=1.3e-05 Score=59.35 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|+|||||.+|+.+|+.|++ .|.+|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEecccc
Confidence 79999999999999999999 8999999997643
No 231
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.95 E-value=1.5e-05 Score=59.61 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|+.+|..+.+ .|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence 4799999999999999999999 89999999973
No 232
>KOG0685|consensus
Probab=97.94 E-value=2.3e-05 Score=58.46 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+|+|||||++||++|.+|.+. ...+++|+|..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEAS 54 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEec
Confidence 346899999999999999999962 45689999975
No 233
>PLN02529 lysine-specific histone demethylase 1
Probab=97.93 E-value=2.4e-05 Score=61.24 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+|+|||+|++|+.+|..|.+ .|.+|+|+|+....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccC
Confidence 45799999999999999999999 89999999997543
No 234
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.92 E-value=2.2e-05 Score=62.39 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..+||+|||+|.+|+.+|+.+++ .|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 45799999999999999999998 8999999999864
No 235
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.92 E-value=2e-05 Score=57.74 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|+|||+|++|+.+|..|++..++.+|+|+|++..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 79999999999999999987556789999999743
No 236
>PRK02106 choline dehydrogenase; Validated
Probab=97.91 E-value=2.1e-05 Score=59.37 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|.+|+.+|.+|++. ++.+|+|+|+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence 447999999999999999999983 589999999974
No 237
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.88 E-value=1.3e-05 Score=60.26 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+++|||||++|+.+|+.|+. .|.+|.++||++..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsi 159 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSI 159 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcc
Confidence 34689999999999999999999 99999999998653
No 238
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.88 E-value=2.3e-05 Score=58.04 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~~~ 64 (90)
||+|||+|++|..+|..|++..+. .+|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 699999999999999999985544 899999997544
No 239
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.88 E-value=3.3e-05 Score=55.80 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|+|||+|++|+.+|..|++..+..+|++++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 358999999999999999999843445899999874
No 240
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.87 E-value=1.9e-05 Score=57.39 Aligned_cols=36 Identities=39% Similarity=0.610 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
..+|+|||+|++||++|+.|.+ ..+||+||.+...+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlG 43 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLG 43 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc---ccceEEEecccccc
Confidence 4589999999999999999987 56999999875543
No 241
>KOG2853|consensus
Probab=97.86 E-value=1.9e-05 Score=57.50 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCC-CCCCccCcCeeeecCCCCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFN-MDTTSDGAAGLFEPSPNFMGP 84 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~-~~~~s~~~~g~~~~~~~~~~~ 84 (90)
+.+++|+|||+|..|.++|+.|+++. .+++|+|+|++.. ...++..+-|.++.++.+.+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEn 146 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPEN 146 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchh
Confidence 45689999999999999999998643 4689999999743 344555566666766655443
No 242
>PLN02546 glutathione reductase
Probab=97.86 E-value=3.3e-05 Score=58.67 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~ 60 (90)
++|++|||+|++|..+|..+++ .|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence 4799999999999999999999 8999999996
No 243
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.85 E-value=4.2e-05 Score=57.00 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+++|||+|++|+.+|..|++ .|.+|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCC
Confidence 34699999999999999999999 8999999998753
No 244
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.85 E-value=3.6e-05 Score=56.27 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.....+|+|||+|++|+.+|..|.+ .+.+|+|||+++.
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCC
Confidence 3455799999999999999998876 6789999998643
No 245
>KOG1800|consensus
Probab=97.84 E-value=3.2e-05 Score=56.74 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
.+|+|||+|++|+-+|..|.+++++.+|+++|+.+.|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4899999999999999999886678999999998654
No 246
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.84 E-value=3.4e-05 Score=55.77 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+++|++|||||.+|+.|+++|++ .|.++.|+....
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 35799999999999999999999 899999998764
No 247
>PLN03000 amine oxidase
Probab=97.82 E-value=4.3e-05 Score=60.70 Aligned_cols=38 Identities=37% Similarity=0.497 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
...+|+|||+|++|+.+|..|.+ .|.+|+|+|++...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCC
Confidence 34799999999999999999999 899999999976543
No 248
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.82 E-value=4.3e-05 Score=54.80 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|++|+.+|..|++..+..+|+|++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 48999999999999999998865678999998864
No 249
>PRK09897 hypothetical protein; Provisional
Probab=97.81 E-value=4.4e-05 Score=57.81 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
++|+|||+|++|+++|..|.+.....+|+|||+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 489999999999999999987434579999999643
No 250
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.80 E-value=5.5e-05 Score=55.94 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|++|+.+|..+++ .|.+|+++|++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC
Confidence 489999999999999999999 899999999874
No 251
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.80 E-value=4.6e-05 Score=56.93 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~~ 61 (90)
.+|++|||+|++|..+|..+++ . |.+|+|+|++
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecc
Confidence 4799999999999999999998 6 8999999973
No 252
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.79 E-value=4.6e-05 Score=56.73 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|++|||+|++|..+|.++++ .|.+|+++|+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~ 37 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGE 37 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecC
Confidence 45899999999999999999999 888899999974
No 253
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.78 E-value=7.5e-05 Score=55.66 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|+.+|..+++ .|.+|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence 3699999999999999999999 89999999974
No 254
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=6.9e-05 Score=55.83 Aligned_cols=35 Identities=43% Similarity=0.591 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+..+|+|||+|++||.+|..|.+ .|.+|+++|+..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~ 156 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVA 156 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcC
Confidence 44799999999999999999999 899999999863
No 255
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.76 E-value=5.7e-05 Score=57.36 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
+|++|||+|++|+.+|+.|.+ .+.+|+++|+....+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccC
Confidence 489999999999999999999 899999999976544
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.76 E-value=5.1e-05 Score=58.72 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|++|||+|++|..+|..+++ .|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 4799999999999999999999 89999999964
No 257
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.76 E-value=6.2e-05 Score=54.12 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|++|||+|.+|+.+|..+++ .|.+|.|+||+.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEecccc
Confidence 589999999999999998888 8999999999743
No 258
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=8.5e-05 Score=56.51 Aligned_cols=36 Identities=42% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+++|||+|++|+.+|..|.+ .|.+|+|+|+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 45689999999999999999999 8999999998754
No 259
>KOG1298|consensus
Probab=97.72 E-value=5.4e-05 Score=55.77 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...|++|||+|.+|.+.|+.|.+ .|.+|.|+|++
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAK--DGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence 44699999999999999999999 89999999997
No 260
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.70 E-value=5.9e-05 Score=55.27 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie 59 (90)
||+|||||++|+.+|+.+++ .|.+|+++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEe
Confidence 79999999999999999999 899999993
No 261
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.62 E-value=6.7e-05 Score=56.27 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~ 62 (90)
|++|||+|.+|+.+|.+|++ .+ .+|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~--~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE--DVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhcc--CCCCeEEEEecCC
Confidence 78999999999999999998 66 6999999974
No 262
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.62 E-value=8.3e-05 Score=56.30 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+|++|||+|.+|..+|..|.. ++.+|+|+|...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence 456899999999999999999997 999999999873
No 263
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.59 E-value=0.00014 Score=53.16 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=38.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC---CCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM---DTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~---~~~s~~~~g~~~~ 77 (90)
..|++|||+|.+||.+|..|+. .|.+|+|+|++... +.+-|+-+|++--
T Consensus 5 ~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~v 56 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLV 56 (552)
T ss_pred cccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEe
Confidence 4699999999999999999999 89999999997432 3444555565533
No 264
>KOG4716|consensus
Probab=97.57 E-value=0.00016 Score=52.77 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=43.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc-CCCCCCCccCcCeeeec
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~-~~~~~~~s~~~~g~~~~ 77 (90)
...+|.+|||+|.+||+||...+. .|.+|.++|- .+.|.+.+|.-+|....
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvN 68 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVN 68 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeee
Confidence 356899999999999999999999 8999999996 46678889988887654
No 265
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.57 E-value=7.1e-05 Score=55.27 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|++|||+|.+|+.+|+.+.+ .+.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 489999999999999999998 799999999874
No 266
>PLN02976 amine oxidase
Probab=97.56 E-value=0.00016 Score=60.31 Aligned_cols=37 Identities=35% Similarity=0.566 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
..+|+|||+|++|+.+|+.|.+ .|.+|+|+|+....+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCC
Confidence 4689999999999999999999 899999999975543
No 267
>PRK07846 mycothione reductase; Reviewed
Probab=97.51 E-value=0.00023 Score=52.58 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=27.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+|++|||+|++|..+|.. + .|.+|+++|++..
T Consensus 2 yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~~~ 33 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--F--ADKRIAIVEKGTF 33 (451)
T ss_pred CCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCC
Confidence 699999999999987754 4 5999999998643
No 268
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.51 E-value=0.00021 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.3
Q ss_pred EEECCCHHHHHHHHHHHhhC---CCCcEEEEccCC
Q psy1704 31 AILGAGIIGLSTALELQRRF---PNCDVTVIADKF 62 (90)
Q Consensus 31 ~IiG~G~~Gl~~A~~l~~~~---~g~~v~vie~~~ 62 (90)
+|||+|++|++++..|.+.. ...+|+|||+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999998752 467999999964
No 269
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.50 E-value=0.00013 Score=53.31 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=27.8
Q ss_pred EECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 32 IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
|||+|.+|+++|+.+++ .|.+|+|+||...
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 79999999999999999 8999999999764
No 270
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.48 E-value=0.00029 Score=52.70 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=39.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC---CCCccCcCeeeec
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM---DTTSDGAAGLFEP 77 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~---~~~s~~~~g~~~~ 77 (90)
..||++||||+.+.++++.|++..+.++|+|+|+-... ....|.++|.-+.
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHa 56 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHA 56 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchh
Confidence 47999999999999999999987789999999996443 2234555554443
No 271
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.46 E-value=0.0002 Score=50.93 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhh-CCCCcEEEEccCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRR-FPNCDVTVIADKFN 63 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~-~~g~~v~vie~~~~ 63 (90)
+|+|||+|++|+.+|..+.++ .++.+|+|+|++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999653 25789999998743
No 272
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.38 E-value=0.00037 Score=51.37 Aligned_cols=37 Identities=32% Similarity=0.649 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.++|+|+|||++|+.++..|.++.++.+|+++|++..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4689999999999999999998422478999999743
No 273
>KOG0399|consensus
Probab=97.38 E-value=0.00035 Score=57.34 Aligned_cols=45 Identities=33% Similarity=0.510 Sum_probs=37.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcCeeeec
Q psy1704 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 24 ~~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
..+.++|.|||+|++||.+|-.|.+ .|..|+|+|+. ...+|++.+
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~-------dr~ggll~y 1826 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERS-------DRVGGLLMY 1826 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEec-------CCcCceeee
Confidence 3456799999999999999999999 99999999985 445666655
No 274
>KOG0042|consensus
Probab=97.35 E-value=8.5e-05 Score=56.56 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCccCcC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~~~~ 72 (90)
..+||+|||||..|.-||+-.+. .|+++.++|++.+..++|..+.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~T--RGLktaLVE~~DF~SGTSSkST 110 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAAT--RGLKTALVEAGDFASGTSSKST 110 (680)
T ss_pred CcccEEEECCCccCcceeehhhc--ccceeEEEecccccCCccccch
Confidence 44899999999999999998888 8999999999877666555443
No 275
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.34 E-value=0.00035 Score=53.81 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|++|||+|++|+.+|..+++ .|.+|+++|+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEecc
Confidence 489999999999999999999 89999999986
No 276
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.29 E-value=0.00052 Score=50.66 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
++|++|||+|++|..+|. ++ .|.+|+++|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~--~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RF--ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HH--CCCeEEEEeCCC
Confidence 479999999999988754 44 599999999864
No 277
>PLN02785 Protein HOTHEAD
Probab=97.28 E-value=0.00051 Score=52.60 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.+|++|||+|.+|+.+|.+|.+ +.+|+|+|++..
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 4899999999999999999998 489999999753
No 278
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.12 E-value=0.00097 Score=47.23 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~ 65 (90)
..+++|+|+|..|+.+|..+++ .|.+|+++|......
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccc
Confidence 3689999999999999999999 899999999976543
No 279
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.08 E-value=0.0013 Score=52.32 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNM 64 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~ 64 (90)
.+|+|||+|++|+.+|..|.++. .+.+|+||++++..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 48999999999999999997642 35799999987543
No 280
>KOG1238|consensus
Probab=97.06 E-value=0.00077 Score=51.91 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
...+|.+|||||.+|+.+|.+|.+. +..+|+|+|++..+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 3568999999999999999999984 56899999997554
No 281
>KOG1335|consensus
Probab=96.93 E-value=0.0013 Score=48.69 Aligned_cols=39 Identities=13% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
...|++|||+|+.|-.+|...+| .|++.+++|++..-++
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGG 76 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGG 76 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCc
Confidence 45899999999999999999999 8999999999754433
No 282
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.93 E-value=0.002 Score=40.36 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
|+|+|+|..|...|+.|++ .+.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence 6899999999999999999 899999998763
No 283
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.0022 Score=48.03 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~~ 63 (90)
++|+|||+|+.|+..|..|.++.+.. .|.|+|+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 58999999999999999998754333 3999999743
No 284
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.0018 Score=49.54 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+||+|||||++|+.+|+..++ .|.+++++..+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence 4799999999999999999999 899999987653
No 285
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.82 E-value=0.0025 Score=40.85 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|+|+|..|.++|..|.+ .+.+|+++.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence 58999999999999999999 89999999876
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.82 E-value=0.0019 Score=50.89 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHhhC-CCCcEEEEccCCCC
Q psy1704 30 VAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNM 64 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~-~g~~v~vie~~~~~ 64 (90)
|+|||+|++|+.+|..|.+.. .+.+|+|||+++.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 589999999999999987743 45799999987553
No 287
>KOG2844|consensus
Probab=96.81 E-value=0.0038 Score=48.94 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccCCCCCCCccCcCeeeec
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNMDTTSDGAAGLFEP 77 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~~~~~~~s~~~~g~~~~ 77 (90)
...+++|||+|..|..+++.|++ .|.+ .++.|+...-.+++|.++|++-.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak--~g~k~avlle~~~ltsgttwhtagl~~~ 88 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAK--RGMKGAVLLERSRLTSGTTWHTAGLLWQ 88 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHH--ccccceEEEeeeeeccccccccccceee
Confidence 44799999999999999999999 7888 44555555456678888887655
No 288
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.80 E-value=0.0028 Score=41.64 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=26.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+|..|...|..+.. .|.+|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 48999999999999999999 89999999976
No 289
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.74 E-value=0.0018 Score=42.84 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|+|.|+.|+.+|..+++ .|.+|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE--KGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHh--CCCEEEEEeCC
Confidence 79999999999999999999 89999999976
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.74 E-value=0.0033 Score=45.45 Aligned_cols=35 Identities=40% Similarity=0.568 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..+++|||+|..|+.+|..|.+ .+.+|+++|+.+.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~ 178 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQ--RRCKVTVIELAAT 178 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCc
Confidence 3589999999999999999998 7999999998643
No 291
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.73 E-value=0.0034 Score=46.53 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|+|.+|+.+|..|.+ .|.+|+++|+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3589999999999999999998 89999999965
No 292
>KOG4254|consensus
Probab=96.72 E-value=0.0025 Score=47.93 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|.+|||+|+-||.+|..|++ -+.+|.++|++..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv 48 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHV 48 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeee
Confidence 356899999999999999999999 8999999999743
No 293
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.0031 Score=46.35 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
+|+|+|.|.+|+++|..|.+ .|.+|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch
Confidence 68999999999999999999 89999999986543
No 294
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.64 E-value=0.004 Score=46.08 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|++|+.+|..|++ .+.+|+++|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecC
Confidence 3689999999999999999998 799999999764
No 295
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.64 E-value=0.0053 Score=43.28 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|+|||+|..|...|..|.+ .|.+|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence 479999999999999999999 899999998753
No 296
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.64 E-value=0.0046 Score=45.25 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|.+|+.+|..+++ .+.+|+++++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 3589999999999999999998 899999999864
No 297
>KOG2404|consensus
Probab=96.60 E-value=0.0038 Score=45.54 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCCCCCcc
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD 69 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~~s~ 69 (90)
.++|||+|.+||+++..+-. .+-.|+++|+....++.|-
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcce
Confidence 59999999999999999988 5556999999755444333
No 298
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.53 E-value=0.0075 Score=40.49 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+++|||+|.+|..-+..|.+ .|.+|+|++++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCC
Confidence 34689999999999999999998 8999999987643
No 299
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.51 E-value=0.0075 Score=38.91 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+++|||||..|..-+..|.+ .|.+|+|++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCc
Confidence 45789999999999999999988 89999999754
No 300
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.48 E-value=0.0065 Score=45.42 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
+.+++|||+|+.|+..|..+++ -|.+|||+|+...
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~ 207 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDR 207 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCC
Confidence 4589999999999999999999 8999999998744
No 301
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.47 E-value=0.0058 Score=44.86 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|.+ .+.+|+++|+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence 3589999999999999999998 789999999864
No 302
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.44 E-value=0.0065 Score=43.60 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|.+ .+.+|+++++.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~ 174 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAA 174 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence 3589999999999999999998 789999999764
No 303
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.44 E-value=0.0072 Score=42.63 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|+|+|+|..|...|..|.+ .|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 379999999999999999999 88999999985
No 304
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.43 E-value=0.0069 Score=39.31 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=28.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+|+|||+|.++.-++..|.+ .+.+|+++-+.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCC
Confidence 45799999999999999999999 788999998763
No 305
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.43 E-value=0.0047 Score=43.29 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCCC
Q psy1704 37 IIGLSTALELQRRFPNCDVTVIADKFNMDT 66 (90)
Q Consensus 37 ~~Gl~~A~~l~~~~~g~~v~vie~~~~~~~ 66 (90)
++||++|+.|++ .|.+|+|+|++...++
T Consensus 1 iaGL~aA~~L~~--~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAK--AGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHH--TTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHh--CCCCEEEEEcCCCCCc
Confidence 589999999999 8999999999866543
No 306
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0068 Score=41.18 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+++|+|+|..|...|..|.+ .|.+|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE--EGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh--CCCceEEEEcCH
Confidence 68999999999999999999 899999999874
No 307
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.43 E-value=0.0083 Score=41.82 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 579999999999999999998 89999999975
No 308
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.0069 Score=42.44 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..+.. .|.+|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 479999999999999999998 899999999764
No 309
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.37 E-value=0.007 Score=42.62 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.|||+|..|...|..|.+ .|.+|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH--CCCeeEEEeCCH
Confidence 69999999999999999999 899999999863
No 310
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.37 E-value=0.008 Score=44.30 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+.+|..|.+ .+.+|+++++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence 689999999999999999998 799999999864
No 311
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.37 E-value=0.0078 Score=44.69 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+.+|..+.+ .|.+|+++|+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCC
Confidence 589999999999999999998 899999999764
No 312
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0044 Score=45.19 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..|.|||+|.+|..+|+.+++ .|..|.++|=++
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~--~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAK--RGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHH--cCCcEEEEEccc
Confidence 468999999999999999999 899999999653
No 313
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.35 E-value=0.0084 Score=44.12 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.+++|||+|..|+.+|..+.+ .|.+|+++++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCC
Confidence 589999999999999999998 7999999998643
No 314
>PRK07846 mycothione reductase; Reviewed
Probab=96.34 E-value=0.0088 Score=44.24 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 3689999999999999999998 899999999864
No 315
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.34 E-value=0.0091 Score=44.09 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|++|+.+|..+.+ .+.+|+++++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 589999999999999999988 789999999764
No 316
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.32 E-value=0.0094 Score=44.18 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+..|..+.+ .|.+|+++|+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 4689999999999999999998 799999999754
No 317
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.32 E-value=0.0087 Score=42.35 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..|.+ .|.+|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecH
Confidence 379999999999999999999 89999999975
No 318
>KOG3855|consensus
Probab=96.31 E-value=0.011 Score=44.10 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhC--CCCcEEEEccCCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMD 65 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~--~g~~v~vie~~~~~~ 65 (90)
.+||+|+|||++|+..|..|.... ..++|+++|....+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~k 76 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPK 76 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcc
Confidence 579999999999999998887421 357899999764343
No 319
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.29 E-value=0.01 Score=43.89 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+..|..+.+ .|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHE 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence 3689999999999999999998 799999999764
No 320
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.29 E-value=0.0089 Score=41.37 Aligned_cols=31 Identities=45% Similarity=0.621 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|+|+|+|..|...|..|.+ .|.+|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 69999999999999999998 78999999874
No 321
>KOG2311|consensus
Probab=96.29 E-value=0.0075 Score=45.90 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+||+|||||.+|..+|.+.++ .|.+.+++..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR--LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh--cCCceEEeecc
Confidence 455799999999999999999999 89999999875
No 322
>PRK06370 mercuric reductase; Validated
Probab=96.29 E-value=0.0099 Score=43.87 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .|.+|+++++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 3689999999999999999998 799999999864
No 323
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.29 E-value=0.012 Score=39.46 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|||+|-.|...+..|.+ .|.+|+|+++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence 45689999999999999999988 789999998753
No 324
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.28 E-value=0.0093 Score=43.43 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|++ .+.+|+++++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSE 170 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc
Confidence 3589999999999999999998 789999999764
No 325
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.27 E-value=0.0094 Score=43.80 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .|.+|+++++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 3689999999999999999999 899999999864
No 326
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.27 E-value=0.0057 Score=36.59 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=29.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+++|||+|..|..-+..|.+ .|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 34689999999999999999998 89999999876
No 327
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.25 E-value=0.012 Score=44.47 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhh--CCCCcEEEEccCCCCCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNMDTT 67 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~--~~g~~v~vie~~~~~~~~ 67 (90)
.+.=|||+|+++|++|.+|-+. -+|.+|+|+|+...++++
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4567999999999999999763 267899999997665543
No 328
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.012 Score=43.16 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.++++|+|+|..|+.+|..|.+ .|.+|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 4689999999999999999999 899999999863
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.22 E-value=0.011 Score=43.44 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+..|..+.+ .+.+|+++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence 3689999999999999999998 799999999864
No 330
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.22 E-value=0.0098 Score=41.29 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~ 60 (90)
+|+|+|+|..|...|..|.+ .|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence 69999999999999999999 7899999987
No 331
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.21 E-value=0.0099 Score=43.69 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+.+|..|.+ .|.+|+++++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence 589999999999999999998 799999999764
No 332
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.19 E-value=0.011 Score=41.18 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+|..|...|..+.+ .|.+|+++|.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHh--CCCcEEEEeCC
Confidence 69999999999999999998 89999999876
No 333
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.0095 Score=43.99 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|+|.|++||..|..+++ .|.+|+.+|.+
T Consensus 2 kI~viGtGYVGLv~g~~lA~--~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAE--LGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHH--cCCeEEEEeCC
Confidence 79999999999999999999 89999999976
No 334
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.14 E-value=0.013 Score=43.32 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+++ .|.+|+++|+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~ 205 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLD 205 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 3589999999999999999998 799999998753
No 335
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.14 E-value=0.012 Score=41.03 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..+++ .|.+|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCC
Confidence 479999999999999999998 89999999875
No 336
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.13 E-value=0.013 Score=43.36 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|+.|+..|..|.+ .|.+|+++++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccC
Confidence 3689999999999999999998 789999999864
No 337
>KOG2755|consensus
Probab=96.13 E-value=0.0054 Score=43.43 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+.+|||||++|.+||-.|++..+..+|+++...
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 368999999999999999987788899988754
No 338
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.07 E-value=0.021 Score=35.67 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~ 61 (90)
...+++|+|+|-+|..++..|.+ .|.+ |+|+.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 45699999999999999999998 6775 9999875
No 339
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.06 E-value=0.014 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .+.+|+++++.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 3689999999999999999998 789999999864
No 340
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.00 E-value=0.015 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 479999999999999999998 899999999763
No 341
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.99 E-value=0.018 Score=38.52 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|..|..+|..|.+ .|. +++++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR--AGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 34689999999999999999999 898 69999986
No 342
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.014 Score=41.83 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..++. .|.+|+++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 579999999999999999998 89999999975
No 343
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.95 E-value=0.02 Score=40.15 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..|.+ .|.+|+++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 479999999999999999998 78999999864
No 344
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.91 E-value=0.017 Score=40.08 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAV--AGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHH--CCCceEEEeCC
Confidence 379999999999999999998 78999999864
No 345
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.91 E-value=0.022 Score=39.78 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..+.. .|.+|+++|.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 479999999999999999998 899999999753
No 346
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.89 E-value=0.017 Score=35.91 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
.+|+|+|+|..|..+|..|.+ .|. +++++|.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHH--hCCCceeecCCc
Confidence 589999999999999999999 787 69999986
No 347
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.88 E-value=0.02 Score=41.75 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .+.+|+++++..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCc
Confidence 3689999999999999999988 789999998754
No 348
>PRK06116 glutathione reductase; Validated
Probab=95.86 E-value=0.021 Score=41.96 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .+.+|+++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~ 200 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGD 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 3689999999999999999998 799999999764
No 349
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.85 E-value=0.018 Score=42.41 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||.|..|+..|..|++ .|.+|+++|.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCH
Confidence 479999999999999999999 899999999753
No 350
>PRK13748 putative mercuric reductase; Provisional
Probab=95.83 E-value=0.018 Score=43.37 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|||+|..|+.+|..+.+ .+.+|+++++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFAR--LGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC
Confidence 3589999999999999999998 79999999874
No 351
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.79 E-value=0.023 Score=41.81 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
..+++|||+|..|+.+|..+.+ .+.+|+++++...
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~ 200 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGEL 200 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCC
Confidence 3589999999999999999988 7899999998643
No 352
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.77 E-value=0.025 Score=36.56 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=28.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+++|+|+|.+|..++..+.. -|.+++++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCC
Confidence 34699999999999999999998 89999999875
No 353
>PLN02507 glutathione reductase
Probab=95.77 E-value=0.023 Score=42.67 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+..|..+.+ .+.+|+++++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~ 236 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKE 236 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecC
Confidence 3589999999999999999988 799999999864
No 354
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.022 Score=40.30 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~ 62 (90)
+|.|||+|.+|..+|+.|.+ .+ .++.++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCc
Confidence 69999999999999999988 66 4799999864
No 355
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.72 E-value=0.03 Score=41.55 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+.+|..|++ .+.+|+++++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 589999999999999999998 799999999754
No 356
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.71 E-value=0.021 Score=45.21 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
.+++|||+|..|+.+|..|.+ .|.+|+|++..+.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPG 174 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCc
Confidence 579999999999999999999 8999999997643
No 357
>PRK14694 putative mercuric reductase; Provisional
Probab=95.70 E-value=0.023 Score=42.10 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|||+|..|+..|..|.+ .+.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFAR--LGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECC
Confidence 3589999999999999999998 78999999864
No 358
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.69 E-value=0.024 Score=40.19 Aligned_cols=32 Identities=28% Similarity=0.594 Sum_probs=27.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
.+|.|||+|..|..+|+.++. .+. +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 379999999999999999988 565 89999974
No 359
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.68 E-value=0.02 Score=43.00 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|++ .+.+|++++...
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeCC
Confidence 3589999999999999999988 788999998753
No 360
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.66 E-value=0.026 Score=41.33 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+..|..+.+ .+.+|+++++..
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 589999999999999999998 799999999764
No 361
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.65 E-value=0.012 Score=42.39 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=24.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.|+++||.|+++|++|..|.+. ...++.++|+.+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~ 36 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRP 36 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-H---EEEEES-S
T ss_pred eeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCC
Confidence 5899999999999999999884 258999999864
No 362
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.64 E-value=0.024 Score=40.03 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+|..|...|..|.+ .|.+|++++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS--KKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH--CCCeEEEEecC
Confidence 58999999999999999999 88999999875
No 363
>PRK14727 putative mercuric reductase; Provisional
Probab=95.64 E-value=0.025 Score=42.10 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+++|||+|..|+..|..+.+ .|.+|+++++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC
Confidence 689999999999999999998 79999999864
No 364
>PTZ00058 glutathione reductase; Provisional
Probab=95.62 E-value=0.025 Score=43.25 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+.+ .|.+|+++++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecc
Confidence 4689999999999999999998 799999999864
No 365
>PRK10262 thioredoxin reductase; Provisional
Probab=95.58 E-value=0.028 Score=39.40 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|.+ .+.+|+++++..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECC
Confidence 4689999999999999999998 788999998864
No 366
>KOG3851|consensus
Probab=95.57 E-value=0.017 Score=42.19 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+++++|||||.+|+..|..+.++.+.-+|.|+|..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 457999999999999999999987766689999975
No 367
>KOG0404|consensus
Probab=95.57 E-value=0.039 Score=38.58 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+++|||+|+++-.+|+++.+ ..++.++||.-
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~ 40 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGM 40 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhh--cccCceEEeee
Confidence 34589999999999999999999 88999999964
No 368
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.57 E-value=0.025 Score=41.88 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|||+|..|+-+|..+.+ .|.+|+++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~ 304 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALR--LGAEVHCLYRR 304 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeec
Confidence 3689999999999999999998 78899999875
No 369
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.54 E-value=0.027 Score=42.24 Aligned_cols=32 Identities=44% Similarity=0.439 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+++|||+|..|+..|..|++ .+.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 589999999999999999998 79999999863
No 370
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.53 E-value=0.028 Score=42.73 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+-+|..|.+ .+.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTR--YASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeCC
Confidence 4689999999999999999988 789999998764
No 371
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=95.51 E-value=0.028 Score=42.08 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+++|||+|..|+.+|..+++ .|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAG--IGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHH--hCCcEEEEEec
Confidence 589999999999999999998 78999999864
No 372
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.51 E-value=0.029 Score=43.74 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+..|..+.+ .|.+|+++|+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 589999999999999999988 789999999764
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.50 E-value=0.032 Score=40.57 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+++|+|+|.+|+.++..+.. .|.+|+++|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 34689999999999999999998 78899999875
No 374
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.49 E-value=0.033 Score=37.97 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|.+ .+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHh--hcCEEEEEEeCc
Confidence 3589999999999999999988 688999998753
No 375
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.48 E-value=0.039 Score=39.08 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+|..|...|..|.+ .|.+|+++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS--KGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 79999999999999999998 89999999985
No 376
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.44 E-value=0.024 Score=41.50 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.|||.|..|+..|..|.+ .|.+|+++|.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHh--cCCeEEEEECCH
Confidence 68999999999999999998 899999999763
No 377
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.44 E-value=0.036 Score=39.92 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
...+|+|||+|..|..+|..|.+ .|. +++|+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCc
Confidence 44689999999999999999999 887 799999864
No 378
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.43 E-value=0.042 Score=34.33 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|+|+|..|..++..|.+ .|. +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence 58999999999999999999 787 69999976
No 379
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.43 E-value=0.03 Score=41.80 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=27.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCC
Q psy1704 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63 (90)
Q Consensus 25 ~~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~ 63 (90)
...+|++|+|.|..-..+|..|++ .|.+|+.+|++..
T Consensus 2 ~~~yDviI~GTGl~esila~als~--~GkkVLhiD~n~y 38 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSR--SGKKVLHIDRNDY 38 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSS
T ss_pred CccceEEEECCCcHHHHHHHHHHh--cCCEEEecCCCCC
Confidence 356899999999998888888999 8999999999854
No 380
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.41 E-value=0.051 Score=38.85 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
.+|.|||+|..|..+|+.+.. .++ ++.++|.++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~ 40 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVK 40 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCC
Confidence 589999999999999999887 675 799999764
No 381
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.39 E-value=0.03 Score=44.80 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|||+|..|+.+|..|.+ .|.+|+|++..+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~ 178 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAP 178 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence 579999999999999999999 799999999764
No 382
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.37 E-value=0.035 Score=38.80 Aligned_cols=31 Identities=45% Similarity=0.604 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+|..|...|..|.+ .|.+|++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 69999999999999999998 78999999875
No 383
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.36 E-value=0.045 Score=32.67 Aligned_cols=31 Identities=39% Similarity=0.468 Sum_probs=27.0
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
++|+|.|..|..++..|.+ .+.+|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCc
Confidence 6899999999999999999 677999999873
No 384
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.34 E-value=0.04 Score=39.68 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
...+|+|||+|..|..+|..|.+ .|. +++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCc
Confidence 44689999999999999999999 788 899999863
No 385
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.32 E-value=0.044 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|..|..+|..|.+ .|. +++|+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence 44689999999999999999999 784 79999976
No 386
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.30 E-value=0.037 Score=41.58 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..|.. .+.+|++++..+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECc
Confidence 3589999999999999999998 788999998764
No 387
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.29 E-value=0.045 Score=38.54 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..|.+ .|.+|++++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 479999999999999999998 899999998763
No 388
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.28 E-value=0.052 Score=34.27 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=27.9
Q ss_pred cEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||+ |..|-.+|+.|.+..-..++.++|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 7999999 99999999999884334479999976
No 389
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.28 E-value=0.043 Score=39.10 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~ 61 (90)
..+++|||+|..|+.+|..|.+ .+.+ |+|+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeec
Confidence 3589999999999999999887 6776 9999864
No 390
>PRK12831 putative oxidoreductase; Provisional
Probab=95.28 E-value=0.036 Score=41.27 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+|+|||+|..|+-+|..+.+ .|.+|+++++.
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r~ 313 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYRR 313 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEeec
Confidence 4699999999999999999998 78889999764
No 391
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.24 E-value=0.062 Score=38.29 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~~ 62 (90)
..+|.|||+|.+|-.+|+.|.. .+. ++.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~--~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN--QGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCC
Confidence 3599999999999999999988 565 799999753
No 392
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.22 E-value=0.044 Score=40.63 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|+|..|+.++..++. .|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCh
Confidence 45689999999999999999988 788999998753
No 393
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.22 E-value=0.042 Score=41.32 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=27.8
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||.|..|+.+|..|+++..+.+|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 699999999999999999982225779989865
No 394
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.015 Score=42.97 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEc
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie 59 (90)
..+||+|||+|++|-++|.+.++ +|++.-++-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~a 241 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVA 241 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHh--hcchhhhhh
Confidence 45799999999999999999998 787665553
No 395
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.16 E-value=0.045 Score=41.19 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLL--AGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 379999999999999999998 89999999975
No 396
>PLN02546 glutathione reductase
Probab=95.14 E-value=0.044 Score=41.92 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+..|..+.+ .+.+|+++++..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecc
Confidence 3589999999999999999988 789999999764
No 397
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.12 E-value=0.05 Score=38.40 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC--CcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g--~~v~vie~~~ 62 (90)
+|+|||+|.+|..+|+.|.. .+ .+++++|.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence 69999999999999999988 56 4799999753
No 398
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.11 E-value=0.062 Score=38.28 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|.|||+|.+|..+|+.|..+....++.++|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 458999999999999999998732233699999653
No 399
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.09 E-value=0.063 Score=35.81 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|..|..+|..|.+ .|. +++++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCC
Confidence 45689999999999999999999 787 79999986
No 400
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.07 E-value=0.055 Score=37.94 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
.+|.|||+|..|..+|+.+.+ .+. ++.++|..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECCC
Confidence 489999999999999999988 554 899999753
No 401
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.05 E-value=0.059 Score=37.05 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|..|..++..|.+ .|. +++++|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence 45699999999999999999999 787 79999876
No 402
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.05 E-value=0.059 Score=37.84 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
..+++|+|+|-+|.++++.|.+ .|. +|+|+++.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 3589999999999999999998 676 79999875
No 403
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.04 E-value=0.038 Score=41.42 Aligned_cols=36 Identities=36% Similarity=0.415 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCCCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~~~ 64 (90)
.++|+|+|-|..|+++|..|.+ .|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~--~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK--LGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH--CCCeEEEEcCCCCc
Confidence 4689999999999999999999 89999999976554
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.04 E-value=0.042 Score=38.18 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||.|..|.+.|..|.+ .|.+|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence 68999999999999999998 78899999975
No 405
>KOG0405|consensus
Probab=95.04 E-value=0.061 Score=39.72 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+|.++||+|-.|++.|.+.++ .|.++.++|..+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f 53 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPF 53 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCC
Confidence 46899999999999999999999 899999999864
No 406
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.00 E-value=0.051 Score=40.06 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~ 61 (90)
.+++|+|+|.+|..+|..|++ .+ .+|++.++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCC
Confidence 479999999999999999998 56 789999986
No 407
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.99 E-value=0.067 Score=39.20 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|+|+|..|+++|..|.+ .|.+|++.|...
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence 3578999999999999999999 899999998753
No 408
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.98 E-value=0.062 Score=36.91 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
...+|+|+|+|..|..+|..|.+ .|. +++++|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~--~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAA--AGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCc
Confidence 44689999999999999999999 786 799999763
No 409
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.97 E-value=0.062 Score=36.56 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC---cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC---DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~---~v~vie~~ 61 (90)
...+++|+|+|-+|..+|..|.+ .|. +++++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence 34689999999999999999988 676 49999986
No 410
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.97 E-value=0.059 Score=40.99 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+|+|+|+|.+|+.+...++. .|.+|.++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 35699999999999999988887 788899998763
No 411
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.96 E-value=0.056 Score=40.57 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhh-CCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~-~~g~~v~vie~~~ 62 (90)
..+++|||+|..|+.+|..+... ..|.+|+|+++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~ 223 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN 223 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 36899999999999999766431 1388999999764
No 412
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.95 E-value=0.068 Score=36.02 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|..|..+|..|.+ .|. +++++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 44689999999999999999999 787 59999986
No 413
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.95 E-value=0.064 Score=37.87 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|.|.+|..++..|.. .|.+|+++++.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 34699999999999999999998 788999998863
No 414
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.94 E-value=0.068 Score=36.19 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|..|..+|..|.+ .|. +++++|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~--~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAA--AGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence 44689999999999999999999 787 79999876
No 415
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.92 E-value=0.064 Score=34.37 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.+||.|..|...|..|.+ .|.+|.++|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccc
Confidence 379999999999999999998 89999999975
No 416
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.89 E-value=0.078 Score=35.36 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..++++|+|.|-.|..+|..|.+ .|.+|+++|.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~--~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLE--EGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 34689999999999999999999 89999999875
No 417
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.87 E-value=0.073 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|.++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 579999999999999999998 899999999764
No 418
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.85 E-value=0.057 Score=40.88 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..+.+ .|.+|+++|.++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 479999999999999999999 899999999763
No 419
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.84 E-value=0.056 Score=38.43 Aligned_cols=31 Identities=39% Similarity=0.578 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|+|+|+|..|...|+.|.+ .|.+|+++-+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~ 32 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK--AGHDVTLLVRS 32 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh--CCCeEEEEecH
Confidence 79999999999999999999 77778877664
No 420
>PRK08328 hypothetical protein; Provisional
Probab=94.82 E-value=0.074 Score=36.24 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
...+|+|+|+|-.|..++..|.+ .|. +++++|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~--~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAA--AGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCc
Confidence 44689999999999999999999 787 699998753
No 421
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.81 E-value=0.088 Score=38.72 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|+|.|.+|+++|..|.+ .|.+|+++|...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~--~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRK--NGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 3579999999999999999998 899999999754
No 422
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.81 E-value=0.075 Score=34.69 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|+|+|..|..++..|.+ .|. +++++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 58999999999999999999 788 59999976
No 423
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.78 E-value=0.059 Score=35.25 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+.++|+|-|..|..+|..|+. .|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECCh
Confidence 44689999999999999999999 899999999874
No 424
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.69 E-value=0.12 Score=29.73 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=28.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCC-CCcEEEEcc
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIAD 60 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~-g~~v~vie~ 60 (90)
...+++|+|.|..|..++..|.+ . +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~--~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLAD--EGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcC
Confidence 34689999999999999999988 5 568999887
No 425
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.69 E-value=0.075 Score=39.36 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|.|..|..+|..++. .|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARG--MGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhh--CcCEEEEEeCCh
Confidence 45689999999999999999988 788999998664
No 426
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.65 E-value=0.06 Score=42.32 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..++. .|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCH
Confidence 579999999999999999998 899999999763
No 427
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.64 E-value=0.062 Score=37.74 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.8
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
|.|||+|..|..+|+.+.. .++ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCCC
Confidence 5799999999999999987 565 999999864
No 428
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.078 Score=39.74 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|.|.+|++++..|.+ .|.+|++.|..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~--~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTR--FGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 3589999999999999998888 79999999964
No 429
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.076 Score=39.36 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|+|.|.+|+++|..|.+ .|.+|++.|...
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVK--LGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHH--CCCEEEEECCCC
Confidence 589999999999999999998 899999999754
No 430
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.58 E-value=0.074 Score=39.65 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|.|..|.++|..|.+ .|.+|++.|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~--~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRA--HLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHH--cCCEEEEEcCC
Confidence 3589999999999999999999 89999999964
No 431
>PRK04148 hypothetical protein; Provisional
Probab=94.52 E-value=0.046 Score=34.67 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.++++||.| .|...|..|++ .|.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECCH
Confidence 579999999 89888989998 899999999764
No 432
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.50 E-value=0.11 Score=34.02 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=29.8
Q ss_pred CCCcEEEECCCH-HHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~-~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..++++|||+|- +|..+|..|.+ .|.+|+++.+..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECCc
Confidence 457999999996 69999999988 788899998763
No 433
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.49 E-value=0.09 Score=35.01 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|..|..++..|.+ .|. +++++|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~--~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVL--AGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 34689999999999999999999 887 59999876
No 434
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.48 E-value=0.073 Score=39.00 Aligned_cols=30 Identities=33% Similarity=0.550 Sum_probs=26.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||.|..|+..|..++. |.+|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ---NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCcEEEEECC
Confidence 68999999999999976664 7899999975
No 435
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.48 E-value=0.07 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..++. .|.+|+++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh--CCCeEEEEeCC
Confidence 579999999999999999998 89999999975
No 436
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.48 E-value=0.044 Score=39.30 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCcEEEEccCC-CCCCCccCcCeeeecCC
Q psy1704 42 TALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSP 79 (90)
Q Consensus 42 ~A~~l~~~~~g~~v~vie~~~-~~~~~s~~~~g~~~~~~ 79 (90)
+|+.|++ .|.+|+|+|++. ...++|..++|++.+..
T Consensus 1 ~A~~La~--~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~ 37 (381)
T TIGR03197 1 TAYSLAR--RGWQVTLYEQDEAPAQGASGNPQGALYPLL 37 (381)
T ss_pred ChHHHHh--CCCeeEEEeCCCcccccCCCChhheeeeec
Confidence 4889998 799999999963 45678889999998754
No 437
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.44 E-value=0.1 Score=35.74 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
..+|+|+|.|-.|..++..|.+ .|. +++++|.+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar--~GVg~i~LvD~D 44 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR--SGVGKLTLIDFD 44 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 4589999999999999999999 787 79999976
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.42 E-value=0.096 Score=36.87 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|.|.+|..+|..|.. .|.+|+++++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~--~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSA--LGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 34689999999999999999998 788999998863
No 439
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.42 E-value=0.087 Score=38.92 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
..+++|||+|..|+-+|..+.+ .|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeec
Confidence 4689999999999999999988 676 89999864
No 440
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.39 E-value=0.12 Score=35.39 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|||||.++..=+..|.+ .|.+|+|+-...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence 44689999999999888888888 899999997653
No 441
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.38 E-value=0.085 Score=38.66 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=28.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhhC------------CCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRF------------PNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~------------~g~~v~vie~~~ 62 (90)
.+++|||+|+.|+..|..|.+.. .+.+|++++...
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 37999999999999999886421 367899999764
No 442
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.36 E-value=0.078 Score=40.27 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+.+++|+|.|..|...|..|.+ .+.+++++|+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH--CCCCEEEEECCH
Confidence 3689999999999999999998 789999999874
No 443
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.32 E-value=0.13 Score=36.73 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~~ 62 (90)
..+|.|||+|..|..+|+.+.. .+ .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCC
Confidence 4589999999999999998887 56 4799999754
No 444
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.29 E-value=0.086 Score=41.46 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~ 61 (90)
..+|+|||+|..|+-+|..+.+ .|.+ |+++++.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtlv~r~ 603 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKR--LGAERVTIVYRR 603 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCCeEEEeeec
Confidence 4689999999999999999988 7876 9999875
No 445
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.28 E-value=0.12 Score=35.63 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|+|+.+..++..+.. -|.+|+|+|.++
T Consensus 99 p~~~L~IfGaG~va~~la~la~~--lGf~V~v~D~R~ 133 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAP--LPCRVTWVDSRE 133 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhc--CCCEEEEEeCCc
Confidence 34689999999999999998888 899999999764
No 446
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.25 E-value=0.086 Score=36.67 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.|||.|..|...|..|.+ .|.+|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~--~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK--AGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 48899999999999999998 899999999763
No 447
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.24 E-value=0.11 Score=38.65 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|+|.|..|..+|..++. .|.+|+++|.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence 45689999999999999999988 788999998764
No 448
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.23 E-value=0.1 Score=38.13 Aligned_cols=31 Identities=45% Similarity=0.627 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+++|+|+|..|..+|..|.+ .+.+|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG--ENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 69999999999999999998 78999999975
No 449
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.20 E-value=0.11 Score=34.60 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|..|..++..|.. .|. +++++|.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La~--~GVg~i~lvD~d 54 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL--SGIGSLTILDDR 54 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 44689999999999999999999 887 59999876
No 450
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=94.17 E-value=0.093 Score=41.47 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..++. .|.+|+++|.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCH
Confidence 579999999999999999998 899999999753
No 451
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.14 E-value=0.12 Score=35.89 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
+|.|||.|..|...|..+.+ .|.+|++++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~ 34 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLK--AGYSLVVYDRN 34 (296)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 79999999999999999998 88999999875
No 452
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.11 E-value=0.13 Score=34.52 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.9
Q ss_pred cEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.||| +|..|...|..|.+ .|.+|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcCH
Confidence 689997 79999999999998 788999997753
No 453
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.11 E-value=0.13 Score=36.15 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~ 61 (90)
.+|+|||.|..|...|..|.+ .+. +|++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCCCcEEEEEECC
Confidence 479999999999999999988 564 78899875
No 454
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.12 Score=38.60 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|.|.+|+++|..|.+ .|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~--~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSE--LGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHH--CCCEEEEECCC
Confidence 3579999999999999999998 78899999975
No 455
>PRK08223 hypothetical protein; Validated
Probab=94.09 E-value=0.12 Score=36.62 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~~ 62 (90)
...+|+|||+|-.|..++..|++ .|. +++++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~--aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLAR--LGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHH--hCCCeEEEEeCCC
Confidence 45699999999999999999999 787 699999763
No 456
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.04 E-value=0.12 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|+|+|..|..++..|.+ .+.+|+++|+++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~ 264 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDP 264 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 4689999999999999999988 789999998764
No 457
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.01 E-value=0.13 Score=39.21 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..+++|+|+|.+|+.++..+.. .|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 4699999999999999998888 788899998753
No 458
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.98 E-value=0.14 Score=36.49 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC--cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~--~v~vie~~ 61 (90)
+|.|||+|..|..+|+.|.. .++ ++.++|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~--~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA--LGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 58999999999999999987 454 69999975
No 459
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.95 E-value=0.098 Score=41.08 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHH-hhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~-~~~~g~~v~vie~~ 61 (90)
.+|.|||+|..|...|..++ . .|.+|+++|..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~ 342 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDIN 342 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCC
Confidence 57999999999999999888 6 79999999975
No 460
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.95 E-value=0.16 Score=35.71 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCc-EEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~-v~vie~~ 61 (90)
...++|+|+|-+|.++++.|.+ .|.+ |+|++++
T Consensus 126 ~k~vlI~GAGGagrAia~~La~--~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCAL--DGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 4578999999999999999988 7876 9999875
No 461
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.88 E-value=0.095 Score=38.14 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILG-AGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG-~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+|+||| .|..|-+.|..|.+ .|.+|+++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~--~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL--SGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH--CCCeEEEeCCC
Confidence 446899999 89999999999999 89999999975
No 462
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.87 E-value=0.15 Score=35.25 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|+|.+|...+..|.+ .+.+|+++++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~--~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLK--ADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3579999999999999999998 78899998765
No 463
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.84 E-value=0.16 Score=35.39 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~ 61 (90)
..+++|+|+|-+|..++..|.+ .| .+|+|+.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~--~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLD--LGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence 4589999999999999999998 67 689999875
No 464
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.82 E-value=0.2 Score=31.24 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~ 61 (90)
..+++|+|+|..|...+..+.+ .+ .+|++++++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~--~g~~~v~v~~r~ 52 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAE--LGAAKIVIVNRT 52 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence 3589999999999999999988 54 679998875
No 465
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.76 E-value=0.13 Score=37.61 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|+|+|-|..|.++|..|.+ .|.+|+.+|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~--~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ--KGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 479999999999999999998 788999999754
No 466
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.72 E-value=0.16 Score=34.96 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=27.6
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|||+|..|..++..|.. .|. +++++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~--~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL--MGFGQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 58999999999999999998 776 69999876
No 467
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.69 E-value=0.081 Score=33.42 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=25.9
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
++|+|+|+.+..++.-+.. -|.+|+++|.++
T Consensus 1 L~I~GaG~va~al~~la~~--lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL--LGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHH--CTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHh--CCCEEEEEcCCc
Confidence 4799999999999998888 899999999874
No 468
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.68 E-value=0.16 Score=36.84 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|-.|..++..|.. .|. +++++|.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~--~Gvg~i~lvD~D 61 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAG--AGVGHITIIDDD 61 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 44689999999999999999999 787 69999976
No 469
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.66 E-value=0.21 Score=32.71 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=28.1
Q ss_pred CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..+++|+|+ |..|..++..|.+ .+.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~--~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR--EGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 358999997 9999999999988 78899998765
No 470
>PRK08017 oxidoreductase; Provisional
Probab=93.65 E-value=0.19 Score=33.56 Aligned_cols=32 Identities=41% Similarity=0.498 Sum_probs=27.6
Q ss_pred CcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..++|.|+ |..|..++..|.+ .|.+|++++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~--~g~~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKR--RGYRVLAACRK 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCC
Confidence 36999998 8999999999998 78888888764
No 471
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=93.63 E-value=0.16 Score=37.19 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|-.|..+|..|.. .|. +++|+|.+
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~--~Gvg~i~lvD~D 75 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAA--AGVGTLGIVEFD 75 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence 45699999999999999999999 787 69999976
No 472
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.63 E-value=0.14 Score=35.86 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.|||.|..|...|..|.+ .|.+|+++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~--~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK--QGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 69999999999999999998 889999998763
No 473
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.60 E-value=0.2 Score=36.92 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...-++|+|.|.+|+++|..|.+ .|.+|++.|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~--~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR--QGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh--CCCeEEEEeCCC
Confidence 44679999999999999999998 899999999753
No 474
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.59 E-value=0.14 Score=40.26 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHH-hhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~-~~~~g~~v~vie~~~ 62 (90)
.+|.|||+|..|...|..++ + .|.+|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCH
Confidence 57999999999999998876 5 699999999763
No 475
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.58 E-value=0.18 Score=36.86 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|..|..++..|.+ .|. +++++|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~--~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLAS--AGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence 45689999999999999999999 786 79999976
No 476
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.58 E-value=0.18 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=27.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCC---CcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPN---CDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vie~~ 61 (90)
.++.|||+|..|...+..+.+ .+ .+|.+++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~--~g~~~~~v~v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLA--SGVPAKDIIVSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHh--CCCCcceEEEEcCC
Confidence 379999999999999999887 56 578889875
No 477
>PRK00536 speE spermidine synthase; Provisional
Probab=93.56 E-value=0.091 Score=36.76 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...+|+|||||-.| ++..+.+ ...+|+++|-+
T Consensus 72 ~pk~VLIiGGGDGg--~~REvLk--h~~~v~mVeID 103 (262)
T PRK00536 72 ELKEVLIVDGFDLE--LAHQLFK--YDTHVDFVQAD 103 (262)
T ss_pred CCCeEEEEcCCchH--HHHHHHC--cCCeeEEEECC
Confidence 34699999999876 6677777 33489999864
No 478
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=93.55 E-value=0.21 Score=28.80 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=26.2
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCC---CcEEEE-ccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPN---CDVTVI-ADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g---~~v~vi-e~~ 61 (90)
+|.|||+|-.|...+..+.+ .+ .+|.++ +++
T Consensus 1 kI~iIG~G~mg~al~~~l~~--~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA--SGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH--TTS-GGEEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCceeEEeeccCc
Confidence 58899999999999999988 67 788866 654
No 479
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.51 E-value=0.26 Score=35.50 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..++|+|.|+ |..|..++..|.+ .|.+|+.+++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~--~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA--EGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh--CCCEEEEEEec
Confidence 4468999998 9999999999998 78999999864
No 480
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.46 E-value=0.16 Score=37.61 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHH-HHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLS-TALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~-~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+++|+|.|-+|++ +|..|.+ .|.+|++.|...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~--~G~~V~~~D~~~ 41 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLN--LGYKVSGSDLKE 41 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHh--CCCeEEEECCCC
Confidence 57999999999999 6888988 899999999754
No 481
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.42 E-value=0.19 Score=35.73 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|||+|..|..++..|.. .|. +++|+|.+
T Consensus 1 kVlVVGaGGlG~eilknLal--~Gvg~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL--SGFRNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence 58999999999999999999 776 69999875
No 482
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.41 E-value=0.18 Score=36.16 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|+|+|-.|..+|..|.. .|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~--aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLG--WGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCeEEEECCC
Confidence 58999999999999999999 787 79999975
No 483
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=93.35 E-value=0.22 Score=34.56 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhC---------CCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRF---------PNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~---------~g~~v~vie~~ 61 (90)
...+|+|||+|..|..++..|++.. .|.+++|+|.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 3468999999999999999998721 13489999976
No 484
>PRK07411 hypothetical protein; Validated
Probab=93.31 E-value=0.19 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|||+|-.|..+|..|.. .|. +++++|.+
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~--~Gvg~l~lvD~D 71 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAA--AGIGRIGIVDFD 71 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH--cCCCEEEEECCC
Confidence 44699999999999999999999 787 69999976
No 485
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.30 E-value=0.22 Score=35.02 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
.++++|+|+|-++.++++.|.+ .|. +++|+++.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~--~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVT--HGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--CCCCEEEEEcCC
Confidence 3579999999999999999998 665 68899864
No 486
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.29 E-value=0.21 Score=34.95 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=28.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 27 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
..+++|+|+|-++.++++.|.+ .|. +|+|+.+.
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~--~G~~~i~I~nRt 158 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALAS--LGVTDITVINRN 158 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 4589999999999999999998 675 69999875
No 487
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=93.24 E-value=0.16 Score=37.81 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
..++|+|||+|.+|..++..|.+ .+.+|+++-+.+
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~--~ga~vt~~qRs~ 208 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAE--VGASVTLSQRSP 208 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHh--cCCeeEEEecCC
Confidence 45799999999999999999999 789999998764
No 488
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.22 E-value=0.26 Score=33.40 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
...+++|||||-.|..=+..+.+ .|.+|+|+-++.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~--~ga~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLK--AGADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEcCCc
Confidence 45689999999999999998988 899999998764
No 489
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.21 E-value=0.15 Score=36.49 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
.++.|||+|..|-..|..++. .|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh--cCCceEEEeCC
Confidence 479999999999999999998 78999999976
No 490
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.20 E-value=0.18 Score=35.35 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
+|.|||.|..|...|..|.+ .|.+|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 68999999999999999999 899999998763
No 491
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.34 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.1
Q ss_pred CCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 27 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 27 ~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
...++|.|+ |..|..++..+.+ .|.+|+++.+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~--~g~~V~~~~r~ 42 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQ--RGARVVAAARN 42 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHH--CCCEEEEEeCC
Confidence 457999998 6889999999998 78899988764
No 492
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.18 E-value=0.21 Score=35.31 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=26.6
Q ss_pred EEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 30 v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
++|||+|.+|+.+|..+.+..+..+++++..+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~ 32 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGRE 32 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 58999999999999998875567788877665
No 493
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.18 E-value=0.2 Score=36.40 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
...+|+|+|+|-.|..++..|.+ .|. +++++|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~--~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAA--AGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 45689999999999999999999 787 69999976
No 494
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.16 E-value=0.19 Score=36.02 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 29 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 29 ~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
+|+|||+|..|..++..|.. .|. +++|+|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal--~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVL--TGFGEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHH--hcCCeEEEEcCC
Confidence 58999999999999999998 776 79999976
No 495
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.15 E-value=0.13 Score=38.41 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~ 61 (90)
..++|+|||+|.+|+-.|..|.+ ...+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~--~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAK--VAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHH--hCCeEEEEEee
Confidence 34689999999999999999998 67899998874
No 496
>PLN02240 UDP-glucose 4-epimerase
Probab=93.13 E-value=0.27 Score=34.54 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=28.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHhhCCCCcEEEEcc
Q psy1704 26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD 60 (90)
Q Consensus 26 ~~~~v~IiG~-G~~Gl~~A~~l~~~~~g~~v~vie~ 60 (90)
+..+++|.|+ |..|..++..|.+ .|.+|+++++
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~--~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLL--AGYKVVVIDN 37 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeC
Confidence 3468999987 8999999999998 7889999875
No 497
>PLN02494 adenosylhomocysteinase
Probab=93.10 E-value=0.24 Score=37.54 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
....++|+|.|.+|..+|..++. .|.+|+++|..+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka--~Ga~VIV~e~dp 287 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKA--AGARVIVTEIDP 287 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 45789999999999999999987 788999998764
No 498
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.10 E-value=0.23 Score=34.81 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=27.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCC-cEEEEccC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 61 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~-~v~vie~~ 61 (90)
.+++|+|+|-++.++++.|.+ .|. +|+|+.+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~--~g~~~i~i~nR~ 155 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRD--AGFTDGTIVARN 155 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 479999999999999999998 676 59999875
No 499
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=0.18 Score=37.74 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCcEEEEccCC
Q psy1704 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62 (90)
Q Consensus 28 ~~v~IiG~G~~Gl~~A~~l~~~~~g~~v~vie~~~ 62 (90)
.+|+|+|.|.+|+++|..|.+ .|.+|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~--~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCAR--HGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHH--CCCEEEEEcCCC
Confidence 479999999999999999998 899999999753
No 500
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=93.00 E-value=0.23 Score=36.65 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCC-CcEEEEccC
Q psy1704 26 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61 (90)
Q Consensus 26 ~~~~v~IiG~G~~Gl~~A~~l~~~~~g-~~v~vie~~ 61 (90)
...+++|+|+|..|..++..|.. .| .+|+++++.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~--~G~~~V~v~~rs 213 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLR--KGVGKILIANRT 213 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 34689999999999999999988 67 679999875
Done!