RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1704
(90 letters)
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 53.1 bits (128), Expect = 5e-10
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
V ++G GI+GLSTA EL RR VT++ S AGL P
Sbjct: 1 DVVVIGGGIVGLSTAYELARR--GLSVTLLERGDLASGASGRNAGLLHP 47
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 49.4 bits (119), Expect = 2e-08
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
I+G GI+GLSTA++LQ R+P + V+
Sbjct: 5 FVIIGGGIVGLSTAMQLQERYPGARIAVL 33
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 48.5 bits (116), Expect = 3e-08
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+AI+G GI GLS A LQ+ P+ +VT+
Sbjct: 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 47.6 bits (113), Expect = 8e-08
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
M V I+G GI+GLS A L R DVTV+
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVL 33
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KVAI+G GI GLS A L ++ P+ D+T++
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLL 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 42.8 bits (101), Expect = 4e-06
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
VAI+GAG GL+ AL L R DVT++ ++ + G P
Sbjct: 3 LDVAIVGAGPAGLALALALARA--GLDVTLL-ERAPRELLERGRGIALSP 49
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 42.3 bits (100), Expect = 5e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V I+G GI+G +TA EL P+ V ++
Sbjct: 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALL 34
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 39.9 bits (94), Expect = 4e-05
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
K+AI+G GI GL+ A L +R +VTV
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKR--GHEVTV 27
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
KV I G GI GL+ AL L +R
Sbjct: 1 MKVLIAGGGIGGLTLALTLHQR 22
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 36.2 bits (84), Expect = 8e-04
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
+VAI GAG+ GL+ A EL DVT+
Sbjct: 2 RVAIAGAGLAGLAAAYELADA--GYDVTL 28
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+V +LG+G+IG+++A L + +VTVI
Sbjct: 2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVI 29
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include
glycerol-3-phosphate dehydrogenase (1.1.99.5),
sarcosine oxidase beta subunit (1.5.3.1) and a number
of deaminating amino acid oxidases (1.4.-.-). These
genes have been consistently observed in a genomic
context including genes for the import and catabolism
of 2-aminoethylphosphonate (AEP). If the substrate of
this oxidoreductase is AEP itself, then it is probably
acting in the manner of a deaminating oxidase,
resulting in the same product (phosphonoacetaldehyde)
as the transaminase PhnW (TIGR02326), but releasing
ammonia instead of coupling to pyruvate:alanine.
Alternatively, it is reasonable to suppose that the
various ABC cassette transporters which are also
associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 35.9 bits (83), Expect = 0.001
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 13 AAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72
Q PA P V + V I+G G GL TA+ ++++ P DV V+ D GA+
Sbjct: 10 LEQPDPAPPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVL----EADLCGAGAS 65
Query: 73 G 73
G
Sbjct: 66 G 66
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
+ V I+G G GL+ A+ R V +I +
Sbjct: 4 YDVIIIGGGPAGLTAAIYAARA--GLKVVLILEG 35
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
H V ++GAG +GL+ A++L ++
Sbjct: 24 HPVVVVGAGPVGLALAIDLAQQ 45
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 35.3 bits (82), Expect = 0.002
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 20 NPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
P +GS KVA++GAG GL+ A L R VTV
Sbjct: 532 KPAGIGSRKKVAVIGAGPAGLAAAYFLARA--GHPVTV 567
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 35.1 bits (81), Expect = 0.002
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
H V I+G G+ G ALE++R P+ DV V+A
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVA 35
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
AI+G GI G + AL L RR VT+
Sbjct: 262 DAAIIGGGIAGAALALALARR--GWQVTLY 289
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 34.9 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
+ V I+G+G+ GL+ AL L P+ VTV+ +++S A G
Sbjct: 4 DFEHPDVLIIGSGLAGLTAALSLA---PSFRVTVLTKGPLGESSSYWAQG 50
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 35.2 bits (81), Expect = 0.002
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALEL 46
P G KVAI+GAG+ G+STA+EL
Sbjct: 66 PEPEAYKGPKLKVAIIGAGLAGMSTAVEL 94
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
M + KV I+G GI GLS A+ L+R D+ I +
Sbjct: 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 34.5 bits (80), Expect = 0.003
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
M + V I+GAG GL+ A EL +R VTV+
Sbjct: 1 MTNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVL 33
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+V ++G G IGL A L + VTV+
Sbjct: 1 RVVVVGGGYIGLEFASALAKL--GSKVTVV 28
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 34.1 bits (79), Expect = 0.004
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
++ ILG G GLS A L R+ P+ ++T++ +
Sbjct: 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 33.8 bits (78), Expect = 0.006
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
M S V I+G+GI L+ A EL +V +I K ++ S A G
Sbjct: 1 MPSA-DVIIIGSGIAALTVAKELC---HEYNVIIITKKTKRNSNSHLAQG 46
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 33.5 bits (77), Expect = 0.007
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+A++GAGI G++TA L +R VTV
Sbjct: 3 HIAVIGAGITGVTTAYALAQR--GYQVTVF 30
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 33.4 bits (77), Expect = 0.008
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74
ANP+V+ + + I+G G+ G A E + P+ V I +K N+ + A GL
Sbjct: 3 ANPEVVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVL-IVEKANIKRSGAVAQGL 57
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 33.1 bits (76), Expect = 0.010
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+V ++G G IGL A L + +VTV+
Sbjct: 144 RVVVVGGGYIGLELAAALAKL--GKEVTVV 171
Score = 29.6 bits (67), Expect = 0.13
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G GL+ A+ L R V +I
Sbjct: 1 DVVIIGGGPAGLAAAIRL-ARL-GLKVALI 28
>gnl|CDD|223928 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 334
Score = 32.7 bits (75), Expect = 0.012
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 28 HKVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
K+ ++ +G L+ L L++ +PN + V+ K G A + + +P
Sbjct: 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPK--------GFAPILKLNPE 51
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with
an active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+GAG GL+ A+E Q+ +I
Sbjct: 1 DVIIIGAGPCGLACAIEAQKA--GLSYLII 28
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 32.4 bits (75), Expect = 0.014
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+V I+G G IG A L++ V +I
Sbjct: 232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLI 260
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members
of the pfam01266 family) is syntenically associated
with a family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 32.7 bits (75), Expect = 0.014
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+GAGI+GL+ A RR VTVI
Sbjct: 3 LIIVGAGILGLAHAYAAARR--GLSVTVI 29
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 30.9 bits (71), Expect = 0.014
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 32 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63
I+GAG+ GL A L +R DV V+ +K +
Sbjct: 1 IVGAGLSGLVAAYLLAKR--GKDVLVL-EKRD 29
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 32.5 bits (74), Expect = 0.015
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
KV I+G G+ GL+ A+ L ++ DVT+I + AG+ P
Sbjct: 3 KVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGIKKSNSYLAQAGIAFP 49
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 32.2 bits (73), Expect = 0.017
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++GAG IGL A +R VT+I
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKR--GKKVTLI 165
Score = 29.9 bits (67), Expect = 0.14
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
+ I+G G GLS A L+R ++T+I +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 32.3 bits (74), Expect = 0.020
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI----ADKFN--MDTTS 68
S V I+G G +GL+ AL+L RR D ++ FN +TTS
Sbjct: 6 SETPVLIVGGGPVGLALALDLGRR--GVDSILVERKDGTAFNPKANTTS 52
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 31.8 bits (73), Expect = 0.023
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 30 VAILGAGIIGLSTALELQR 48
+ I+G G +GL+ AL L R
Sbjct: 2 IVIVGGGPVGLALALALAR 20
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 31.0 bits (71), Expect = 0.027
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+G G +G S A EL+ DV VI
Sbjct: 1 IIIIGYGRVGRSLAEELREG--GPDVVVI 27
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 31.6 bits (72), Expect = 0.031
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 29 KVAILGAGIIGLSTALEL-QRRFPNCDVTVIADKFNM 64
KVAI+G G G+ A L + P+ +++ + N
Sbjct: 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 31.5 bits (72), Expect = 0.031
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K+ I+GAG +G S A EL +V +I
Sbjct: 2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDR 31
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 31.7 bits (72), Expect = 0.033
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G GI GL A L++ P V +
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELT 33
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.4 bits (72), Expect = 0.039
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
V I+G+G GLS AL L + V V++ + ++ A G
Sbjct: 8 QCDVLIIGSGAAGLSLALRLA---EHRRVAVLSKGPLSEGSTFYAQG 51
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase.
Carotene 7,8-desaturase, also called zeta-carotene
desaturase, catalyzes multiple steps in the pathway
from geranylgeranyl-PP to all-trans-lycopene in plants
and cyanobacteria. A similar enzyme and pathway is
found in the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 31.3 bits (71), Expect = 0.040
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 29 KVAILGAGIIGLSTALEL 46
KVAI+GAG+ GLSTA+EL
Sbjct: 1 KVAIVGAGLAGLSTAVEL 18
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 31.3 bits (71), Expect = 0.040
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
K+A++G+GI GLS A L RR DVT+
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRH---DVTL 35
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 31.1 bits (71), Expect = 0.043
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+ ILGAG IG L + DVT++
Sbjct: 2 KILILGAGAIGSLLGARLAKA--GHDVTLLV 30
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase
[Cell envelope biogenesis, outer membrane].
Length = 448
Score = 31.1 bits (71), Expect = 0.051
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 78
KV +LG G GL+ A L + +VTV D+ + + L
Sbjct: 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAA--QPLLLEG 54
>gnl|CDD|99964 cd03789, GT1_LPS_heptosyltransferase, Lipopolysaccharide
heptosyltransferase is involved in the biosynthesis of
lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is
a major component of the outer membrane of
gram-negative bacteria. LPS heptosyltransferase
transfers heptose molecules from ADP-heptose to
3-deoxy-D-manno-octulosonic acid (KDO), a part of the
inner core component of LPS. This family belongs to the
GT-B structural superfamily of glycoslytransferases,
which have characteristic N- and C-terminal domains
each containing a typical Rossmann fold. The two
domains have high structural homology despite minimal
sequence homology. The large cleft that separates the
two domains includes the catalytic center and permits a
high degree of flexibility.
Length = 279
Score = 30.7 bits (70), Expect = 0.054
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 29 KVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
++ ++ IG L+T L L+ R+P+ +TV+A A L E P
Sbjct: 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP--------WFAPLLELMPE 49
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 30.9 bits (70), Expect = 0.056
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 63
K S HKVA++GAG GLS L R VTV K
Sbjct: 530 KPQGK--SSAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEK 571
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 30.7 bits (70), Expect = 0.061
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 30 VAILGAGIIGLSTALELQR 48
V I+G G++GLS AL L R
Sbjct: 2 VIIVGGGLVGLSLALALSR 20
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 30.6 bits (69), Expect = 0.062
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
H +A++GAG GL A+ P+ DV +I+ + M + + A G
Sbjct: 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEG 49
>gnl|CDD|217105 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyzes the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via
the APB biosynthetic pathway.
Length = 150
Score = 30.3 bits (69), Expect = 0.062
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIA 59
+AILGAG +G L R DVT+IA
Sbjct: 1 IAILGAGAVGSLYGARLAR--AGHDVTLIA 28
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 30.5 bits (69), Expect = 0.073
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 25 GSNHKVAILGAGIIGLSTALELQR 48
V I+GAG+ GLS A EL++
Sbjct: 5 PKTADVIIVGAGLAGLSAAYELKK 28
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 30.6 bits (70), Expect = 0.074
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 26 SNHKVAILGAGIIGLSTALELQRR 49
+ +VA++G G GLS A L+R
Sbjct: 136 TGKRVAVIGGGPAGLSAAYHLRRM 159
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 30.5 bits (69), Expect = 0.076
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 23 VMGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
V + H VAI+GAG GL+ A L++ VI +K
Sbjct: 3 VGVATHTDVAIIGAGQSGLAAAYALKQAGV--PDFVIFEK 40
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 30.2 bits (68), Expect = 0.098
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 26 SNHKVAILGAGIIGLSTALELQRR 49
+ I GAG+ GLS ALEL R
Sbjct: 1 TRGSPLIAGAGVAGLSAALELAAR 24
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 30.0 bits (68), Expect = 0.11
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 29 KVAILGAGIIGLSTALELQR 48
K+AI+GAGI GL+ A LQ
Sbjct: 2 KIAIIGAGIGGLTAAALLQE 21
>gnl|CDD|213335 cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Domain of IQ motif
containing GTPase activating protein 1. IQGAP1 is a
homodimeric protein that is widely expressed among
vertebrate cell types from early embryogenesis.
Mammalian IQGAP1 protein is the best characterized
member of the IQGAP family, and contains several
protein-interacting domains. Human IQGAP1 is most
similar to mouse Iqgap1 (94% identity) and has 62%
identity to human IQGAP2. IQGAP1 binds and cross-links
actin filaments in vitro and has been implicated in
Ca2+/calmodulin signaling, E-cadherin-dependent cell
adhesion, cell motility, and invasion. Yeast IQGAP
homologs have a role in the recruitment of actin
filaments, are components of the spindle pole body, and
are required for actomyosin ring assembly and
cytokinesis. Furthermore, IQGAP1 over-expression has
also been detected in gastric and colorectal carcinomas
and gastric cancer cell lines.
Length = 380
Score = 30.0 bits (67), Expect = 0.11
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 15 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTTSD 69
Q +N +G N ++ + LS + + RRF CDV + DKFN+D SD
Sbjct: 231 QHAASNKMFLGDNAHLSPINEY---LSQSYQKFRRFFQAACDVPELEDKFNVDEYSD 284
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 29.7 bits (67), Expect = 0.13
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++GAG+ GL+ A L R VTV+
Sbjct: 5 DVVVIGAGLNGLAAAALLARA--GLKVTVL 32
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 29.9 bits (68), Expect = 0.14
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ +G G GL AL ++ P +VTV+
Sbjct: 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVV 31
>gnl|CDD|235821 PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.
Length = 304
Score = 29.4 bits (67), Expect = 0.16
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+AILGAG IG L + DVT++A
Sbjct: 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVA 30
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.6 bits (67), Expect = 0.16
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
V I+G G GL AL L R V ++ ++ T+ AG
Sbjct: 4 VLIVGGGPAGLMLALLLARA--GVRVVLV-ERHA-TTSVLPRAGGLNQ 47
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 29.6 bits (67), Expect = 0.16
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+GAG+ GL AL L++ P V +I
Sbjct: 2 LVIVGAGLAGLLLALRLRQARPGLRVLLI 30
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 29.6 bits (67), Expect = 0.16
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 12 SAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFP----NCDVTVIADKFNMDTT 67
SA +A++G G G+ AL L+RR P VT+IA +
Sbjct: 138 SADAPPGTKR--------LAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGF 189
Query: 68 SDGA 71
Sbjct: 190 PAKV 193
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 29.6 bits (67), Expect = 0.17
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75
V ++G+G+ GL+ ALE V V+ + ++G
Sbjct: 2 VVVIGSGLAGLAAALEAAEA--GLKVAVVEKGQPFGGATAWSSGGI 45
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 29.6 bits (67), Expect = 0.18
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL------FEPSPNFM 82
K+ I+G G+S A + +R ++TV +K D S GA GL F PN M
Sbjct: 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVY-EK--TDIVSFGACGLPYFVGGFFDDPNTM 58
>gnl|CDD|223867 COG0796, MurI, Glutamate racemase [Cell envelope biogenesis,
outer membrane].
Length = 269
Score = 29.5 bits (67), Expect = 0.19
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
+ + +G+ GLS E++R+ P+ D+ + D
Sbjct: 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGD 38
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 29.2 bits (66), Expect = 0.20
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72
V I G G +GL+ A+ L++ P+ VTV+ + D A
Sbjct: 4 VVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA 46
>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase.
NAD-linked ribitol-5-phosphate dehydrogenase, a member
of the MDR/zinc-dependent alcohol dehydrogenase-like
family, oxidizes the phosphate ester of
ribitol-5-phosphate to xylulose-5-phosphate of the
pentose phosphate pathway. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
Length = 341
Score = 29.3 bits (66), Expect = 0.23
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI-ADKFNMD 65
+ + + G G +G TAL L++ +P + V + +D
Sbjct: 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203
>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 308
Score = 28.9 bits (65), Expect = 0.26
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 88
VAI+GAG+IG + A+ R +V + D +P ++ LE
Sbjct: 4 SVAIIGAGLIGRAWAIVFARA--GHEVRLW----------DADPAAAAAAPAYIAGRLED 51
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 28.8 bits (65), Expect = 0.28
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
+ S K KVA++G+G GL+ A +L + DVT+
Sbjct: 128 NGIDLSETEEKK----GKKVAVIGSGPAGLTCAGDLAKM--GYDVTI 168
>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Sorbitol dehydrogenase is tetrameric and has a single
catalytic zinc per subunit. Aldose reductase catalyzes
the NADP(H)-dependent conversion of glucose to sorbital,
and SDH uses NAD(H) in the conversion of sorbitol to
fructose. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 343
Score = 28.6 bits (65), Expect = 0.29
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
GVH+ ++ + V + GAG IGL TA
Sbjct: 151 GVHACRRAG------VRPGDTVLVFGAGPIGLLTAA 180
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 28.7 bits (65), Expect = 0.30
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIA 59
V ++G G+ GL+ AL V ++A
Sbjct: 5 VLVIGGGLAGLTAALAAAEA--GKRVALVA 32
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 28.9 bits (65), Expect = 0.30
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 65 DTTSDGAAGLFEPSPNFMG 83
+T S+G AG F P FMG
Sbjct: 294 ETISNGEAGCFMHGPTFMG 312
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 29.0 bits (65), Expect = 0.31
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++G GI GLS L++ P V VI
Sbjct: 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVI 38
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.8 bits (65), Expect = 0.32
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFP-NCDVTVI 58
K+ I+G G G A L R DVT++
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLV 31
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 28.8 bits (65), Expect = 0.35
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRR 49
V ++G G++G S AL L +
Sbjct: 2 YHMKFDVVVVGGGLVGASLALALAQS 27
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 28.8 bits (65), Expect = 0.35
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
++GAG GL+ A+ L VTV+
Sbjct: 1 AVVIGAGFGGLALAIRLAAA--GIPVTVV 27
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 28.5 bits (64), Expect = 0.41
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 16 SCPANPKVMGSNHKVAILGAGIIGLSTALELQRR 49
+ A P + +AI+GAG +GL+ A L RR
Sbjct: 5 ASMAAP-----DFDIAIVGAGPVGLALAGWLARR 33
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN;
Validated.
Length = 433
Score = 28.4 bits (63), Expect = 0.42
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
G +V I A +G ST L + P+ D V+
Sbjct: 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLV 187
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 28.3 bits (64), Expect = 0.43
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
V ++GAG IGL + R VI
Sbjct: 162 TVLVVGAGPIGLGVIQVAKARG----ARVIV 188
>gnl|CDD|132259 TIGR03215, ac_ald_DH_ac, acetaldehyde dehydrogenase
(acetylating). Members of this protein family are
acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10.
This enzyme oxidizes acetaldehyde, using NAD(+), and
attaches coenzyme A (CoA), yielding acetyl-CoA. It
occurs as a late step in the meta-cleavage pathways of
a variety of compounds, including catechol, biphenyl,
toluene, salicylate, etc.
Length = 285
Score = 28.4 bits (64), Expect = 0.43
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 29 KVAILGAGIIGLSTALELQR-----------RFPNCDVTVIADKFNMDTTSDGAAGLFE 76
KVAI+G+G IG +L R P D A + + T+++G GL
Sbjct: 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLA 61
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 28.4 bits (64), Expect = 0.44
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 30 VAILGAGIIGLSTALELQR 48
VAI+G GI+GL+ A L+
Sbjct: 21 VAIVGGGIVGLTLAAALKD 39
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 28.2 bits (63), Expect = 0.45
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+GAG G S A L + DV V+
Sbjct: 6 VVIVGAGPAGSSAARRLAKA--GLDVLVL 32
>gnl|CDD|235337 PRK05077, frsA, fermentation/respiration switch protein; Reviewed.
Length = 414
Score = 28.3 bits (64), Expect = 0.47
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA 71
VA LG + L T + Q++ P + V+A + M SD A
Sbjct: 293 VACLGPVVHTLLTDPKRQQQVPEMYLDVLASRLGMHDASDEA 334
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 28.3 bits (63), Expect = 0.48
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 13 AAQSCPANPKVMGSNHKVAILGAGIIGLSTALE 45
A+++ +P + + + I+GAG G+S A+E
Sbjct: 47 ASKTSYTDPSELKDKYDIVIVGAGGAGMSAAIE 79
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 28.1 bits (63), Expect = 0.49
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 23 VMGSNHKVAILGAGIIGLSTAL 44
V+ V +LGAG +GL A
Sbjct: 131 VLKPGDTVLVLGAGGVGLLAAQ 152
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 28.1 bits (63), Expect = 0.53
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 25 GSNHKVAILGAGIIGLSTALELQRR 49
G++ KV I+G G++G S A L+
Sbjct: 1 GASMKVGIVGLGLMGGSLARALKEA 25
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 28.0 bits (63), Expect = 0.55
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 21 PKVMGSNHKVAILGAGIIGLSTALELQRR 49
++ V ++G GI G A + R
Sbjct: 6 TRLRMEEFDVIVIGGGITGAGIARDAAGR 34
>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes
in this family catalyze the NAD-dependent
alcohol-to-acid oxidation of nucleotide-linked sugars.
Examples include UDP-glucose 6-dehydrogenase (1.1.1.22)
, GDP-mannose 6-dehydrogenase (1.1.1.132) ,
UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136),
UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase
and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase.
These enzymes are most often involved in the
biosynthesis of polysaccharides and are often found in
operons devoted to that purpose. All of these enzymes
contain three Pfam domains, pfam03721, pfam00984, and
pfam03720 for the N-terminal, central, and C-terminal
regions respectively.
Length = 409
Score = 28.0 bits (63), Expect = 0.56
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 29 KVAILGAGIIGLSTALELQRR 49
K+A++G G +GL A L
Sbjct: 2 KIAVIGLGYVGLPLAALLADL 22
>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 28.0 bits (63), Expect = 0.59
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 30 VAILGAGIIGLSTALELQRR 49
V I+GAG GL+ A+EL RR
Sbjct: 6 VLIVGAGPTGLTLAIELARR 25
>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional.
Length = 386
Score = 28.0 bits (63), Expect = 0.59
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
S + ++G + GL AL L+R DV V
Sbjct: 3 HMSGPRAVVIGGSLGGLFAALLLRRA--GWDVDV 34
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 28.0 bits (62), Expect = 0.59
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
KVAI G+G GL+ A +L + DVTV
Sbjct: 432 KVAICGSGPAGLAAAADLVKY--GVDVTV 458
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 27.6 bits (62), Expect = 0.62
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 15/49 (30%)
Query: 31 AILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSP 79
AI+GAG GLS L RR P+ + + +F+PSP
Sbjct: 1 AIIGAGPRGLSVLERLLRRAPDRPLDIT---------------VFDPSP 34
>gnl|CDD|180970 PRK07417, PRK07417, arogenate dehydrogenase; Reviewed.
Length = 279
Score = 27.5 bits (62), Expect = 0.68
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
K+ I+G G+IG S L+L+
Sbjct: 1 MKIGIVGLGLIGGSLGLDLRSL 22
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 27.7 bits (62), Expect = 0.72
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 30 VAILGAGIIGLSTALELQRR 49
V I+G G+ GLS AL L
Sbjct: 3 VIIIGGGLAGLSCALRLAEA 22
>gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase
family, NAD binding domain. The
UDP-glucose/GDP-mannose dehydrogenaseses are a small
group of enzymes which possesses the ability to
catalyze the NAD-dependent 2-fold oxidation of an
alcohol to an acid without the release of an aldehyde
intermediate.
Length = 188
Score = 27.6 bits (62), Expect = 0.73
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++A++G G +GL TA+ L DV +
Sbjct: 1 MRIAVIGLGYVGLPTAVCLAEI--GHDVVGV 29
>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like,
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and
other MDR family members. This subgroup of the medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family has members identified
as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A
dehydrogenase and alcohol dehydrogenases. The medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 277
Score = 27.6 bits (62), Expect = 0.73
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+VA++G G++GL A +L + +V +
Sbjct: 100 RVAVVGLGLVGLLAA-QLAKAAGAREVVGV 128
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 27.9 bits (62), Expect = 0.74
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 7 EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQR 48
+ G+ + + P ++ KVA++GAG GL+ A EL +
Sbjct: 119 QHGIETEPEKAP------STHKKVAVIGAGPAGLACASELAK 154
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 27.5 bits (61), Expect = 0.83
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 26 SNHKVAILGAGIIGLSTALELQR 48
S H VA++GAG GL A EL+R
Sbjct: 10 SQH-VAVIGAGAAGLVAARELRR 31
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 27.5 bits (61), Expect = 0.83
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
V ++G+G GLS AL L + V V++ + S A G
Sbjct: 5 VVVIGSGAAGLSAALALADQG---RVIVLSKAPVTEGNSFYAQG 45
>gnl|CDD|180488 PRK06249, PRK06249, 2-dehydropantoate 2-reductase; Provisional.
Length = 313
Score = 27.6 bits (62), Expect = 0.85
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 23 VMGSNHKVAILGAGIIGLSTALELQR 48
+ ++ I+G G IG L R
Sbjct: 1 MDSETPRIGIIGTGAIGGFYGAMLAR 26
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 27.7 bits (62), Expect = 0.87
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 28 HKVAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNMDTTSDGAAG 73
+ V I+G+G+ GL A+ R V V++ M + S A G
Sbjct: 6 YDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEG 52
>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of
ubiquitin-like proteins related to the E.coli
hypothetical protein ygdL. The common reaction mechanism
catalyzed by E1-like enzymes begins with a nucleophilic
attack of the C-terminal carboxylate of the
ubiquitin-like substrate, on the alpha-phosphate of an
ATP molecule bound at the active site of the activating
enzymes, leading to the formation of a high-energy
acyladenylate intermediate and subsequently to the
formation of a thiocarboxylate at the C termini of the
substrate. The exact function of this family is unknown.
Length = 231
Score = 27.2 bits (61), Expect = 0.88
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 36 GIIGLSTALELQRRF----PNCDVTVIADKFNMDTTSDGAAGLFEPSPNF 81
+G + R P C+V + + D + D L P+F
Sbjct: 60 STVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSED----LLGGDPDF 105
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
Length = 391
Score = 27.4 bits (61), Expect = 0.90
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 29 KVAILGAGIIGLSTALELQR 48
KVAI GAGI G + A L+R
Sbjct: 2 KVAISGAGIAGPTLAYWLRR 21
>gnl|CDD|181452 PRK08507, PRK08507, prephenate dehydrogenase; Validated.
Length = 275
Score = 27.2 bits (61), Expect = 0.90
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN 52
K+ I+G G++G S L L+ +
Sbjct: 2 KIGIIGLGLMGGSLGLALKEKGLI 25
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 27.5 bits (62), Expect = 0.96
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
KVA++GAG GL+ A L R+ DVT+
Sbjct: 142 KVAVIGAGPAGLTAAHRLARK--GYDVTI 168
>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
Length = 881
Score = 27.3 bits (60), Expect = 1.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 5 FSEFGV-HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQR 48
+ FG+ + PA S V I+GAG+ GL+ A +L R
Sbjct: 165 YINFGIAQAIKDKFPAQS----SKSSVVIVGAGLSGLAAARQLMR 205
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 27.3 bits (61), Expect = 1.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALEL---QRRFPNCDVTVI 58
+M + V I+GAG GL A EL R+ P + V+
Sbjct: 13 ALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVV 52
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 27.2 bits (61), Expect = 1.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTS 68
V ++G+G+ GL+ AL +R V V+ K +D S
Sbjct: 19 VVVVGSGVAGLTAALAARRAGRR--VLVVT-KAALDDGS 54
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 27.2 bits (60), Expect = 1.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 22 KVMGSNHKVAILGAGIIGLS-TALELQRRFPNCDVTVI 58
+V+ V I+GAG IGL A QRR C VTVI
Sbjct: 139 EVLQPERSVVIVGAGTIGLELAASATQRR---CKVTVI 173
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production
and conversion].
Length = 313
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 29 KVAILGAGIIGLSTALEL 46
KVA++GAG +G S A L
Sbjct: 2 KVAVIGAGNVGSSLAFLL 19
>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase.
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
medium chain alcohol dehydrogenase, catalyzes the
NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
meso-butanediol to acetoin. BDH functions as a
homodimer. NAD(P)(H)-dependent oxidoreductases are the
major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Sorbitol and aldose reductase are NAD(+) binding
proteins of the polyol pathway, which interconverts
glucose and fructose. Sorbitol dehydrogenase is
tetrameric and has a single catalytic zinc per subunit.
Length = 351
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 29 KVAILGAGIIGLSTALELQ 47
+LGAG IGL T L L+
Sbjct: 175 TALVLGAGPIGLLTILALK 193
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 26.7 bits (59), Expect = 1.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+GAG GLS A EL + PN V +I
Sbjct: 95 VVIVGAGSAGLSCAYELSKN-PNVKVAII 122
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms
this enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 380
Score = 26.9 bits (60), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+GAG +G A L R + ++TV
Sbjct: 1 VLIIGAGGVGQGVAPLLARHG-DLEITVA 28
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 26.9 bits (60), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRR 49
M V I+G GI GL+ AL L R+
Sbjct: 1 MTKVTPVLIVGGGIGGLAAALALARQ 26
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 26.6 bits (59), Expect = 1.7
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 21 PKVMGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTV 57
P+V N KVA++G+G GLS A +L +R DVTV
Sbjct: 424 PEVAEKNGKKVAVIGSGPAGLSFAGDLAKR--GYDVTV 459
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 26.5 bits (59), Expect = 1.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
+AI+GAG GL A+ PN + +I+ + M
Sbjct: 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+A++G G+IGL L R VTV
Sbjct: 171 SLAVIGGGVIGLELGQALSRL--GVKVTVF 198
>gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like,
classical (c) SDRs. Human SPR, a member of the SDR
family, catalyzes the NADP-dependent reduction of
sepiaptern to 7,8-dihydrobiopterin (BH2). In addition
to SPRs, this subgroup also contains Bacillus cereus
yueD, a benzil reductase, which catalyzes the
stereospecific reduction of benzil to (S)-benzoin. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a
central beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 241
Score = 26.5 bits (59), Expect = 1.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 38 IGLSTALELQRRFPNCDVTVIA 59
IG + A EL +R V ++A
Sbjct: 11 IGRALAEELLKRGSPSVVVLLA 32
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 26.5 bits (59), Expect = 2.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
P + KVA++GAG GL+ A +L R DVTV
Sbjct: 114 PGELPGSRTGKKVAVIGAGPAGLAAADDLSRA--GHDVTV 151
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNC 53
N VAI+G G+ GL+ L LQ+ C
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRC 28
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 26.7 bits (59), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALEL 46
+ + N KVAI+G+G GLS A L
Sbjct: 275 LDDEPEKKNKKVAIVGSGPAGLSAAYFL 302
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 30 VAILGAGIIGLSTALEL 46
+ ++GAG GLS A L
Sbjct: 6 IVVVGAGPAGLSFARSL 22
>gnl|CDD|226935 COG4569, MhpF, Acetaldehyde dehydrogenase (acetylating)
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 310
Score = 26.4 bits (58), Expect = 2.1
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRF------------PNCDVTVIADKFNMDTTSDGA 71
M S KVAI+G+G IG +++ R P D A + + TT +G
Sbjct: 1 MSSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGV 60
Query: 72 AGLFEPSPNFMGPDL 86
GL P F DL
Sbjct: 61 IGLLN-MPEFADIDL 74
>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional.
Length = 488
Score = 26.5 bits (59), Expect = 2.2
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75
H V I G G GL A EL DV ++ + N + A GL
Sbjct: 4 HAVVIAGGGPTGLMLAGELA--LAGVDVAIVERRPNQELVGSRAGGLH 49
>gnl|CDD|237341 PRK13302, PRK13302, putative L-aspartate dehydrogenase;
Provisional.
Length = 271
Score = 26.4 bits (58), Expect = 2.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSP 79
+VAI G G IG + A L R P ++ +A + + +D GL P P
Sbjct: 8 RVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR-DPQRHADFIWGLRRPPP 57
>gnl|CDD|237844 PRK14873, PRK14873, primosome assembly protein PriA; Provisional.
Length = 665
Score = 26.4 bits (59), Expect = 2.4
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 9 GVHSAAQSCPA--NPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDV 55
G + CP + ++ + ++GA TA EL R FP V
Sbjct: 417 GRAAPDWRCPRCGSDRL-----RAVVVGAR----RTAEELGRAFPGVPV 456
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members
of this protein family are salicylate 1-monooxygenase,
also called salicylate hydroxylase. This enzyme
converts salicylate to catechol, which is a common
intermediate in the degradation of a number of aromatic
compounds (phenol, toluene, benzoate, etc.). The gene
for this protein may occur in catechol degradation
genes, such as those of the meta-cleavage pathway.
Length = 414
Score = 26.3 bits (58), Expect = 2.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 29 KVAILGAGIIGLSTALELQR 48
+VAI+G GI G++ AL L +
Sbjct: 2 RVAIIGGGIAGVALALNLCK 21
>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase.
Length = 567
Score = 26.3 bits (58), Expect = 2.4
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 29 KVAILGAGIIGLSTA 43
KV I GAG+ GLSTA
Sbjct: 95 KVVIAGAGLAGLSTA 109
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 26.4 bits (58), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
I+G G+ G AL LQR P+ + VI
Sbjct: 2 CIIVGGGLAGGLIALRLQRARPDFRIRVI 30
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 26.3 bits (58), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQR 48
P V+ + +VA++GAG GL+ A L R
Sbjct: 132 PDLSHVVPTGKRVAVIGAGPAGLACADILAR 162
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 26.3 bits (59), Expect = 2.5
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 16/47 (34%)
Query: 18 PANPKVMGSNHKVAIL----GAGI--IGLSTALELQRRFPNCDVTVI 58
P PK ++ ++ GA I I L+ L+RRFP +V +
Sbjct: 132 PFFPK------RIGVITSPTGAAIRDI-LTV---LRRRFPLVEVIIY 168
>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 1
[Coenzyme metabolism].
Length = 263
Score = 26.1 bits (58), Expect = 2.5
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 36 GIIGLSTALELQRRF----PNCDVTVIADKFNMDTTSDGAAGLFEPSPNF 81
G IG ++ R P C+VT I D + D L ++
Sbjct: 79 GDIGKPKVEVMKERIKQINPECEVTAINDFITEENLED----LLSKGFDY 124
>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional.
Length = 463
Score = 26.3 bits (58), Expect = 2.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 30 VAILGAGIIGLSTALELQR 48
V ++G GI GLST L++
Sbjct: 4 VVVIGGGITGLSTMFYLEK 22
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase.
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 433
Score = 26.1 bits (58), Expect = 2.6
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD-TTSDGAAGLFEPSPNFMGPDLE 87
K+ ILG G G + A L ++ +VTV K N + S G L E S G LE
Sbjct: 1 KILILGLGKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLE 58
>gnl|CDD|203625 pfam07372, DUF1491, Protein of unknown function (DUF1491). This
family consists of several bacterial proteins of around
115 residues in length. Members of this family seem to
be found exclusively in the Class Alphaproteobacteria.
The function of this family is unknown.
Length = 104
Score = 25.6 bits (57), Expect = 2.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 66 TTSDGAAGLFEPSPNFM 82
T DG A L+E +P M
Sbjct: 39 RTLDGQATLYERAPQLM 55
>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
dehydrogenases [Amino acid transport and metabolism /
General function prediction only].
Length = 350
Score = 26.2 bits (58), Expect = 2.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++GAG IGL L + V V+
Sbjct: 171 TVVVVGAGPIGLLAIA-LAKLLGASVVIVV 199
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 26.0 bits (57), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 29 KVAILGAGIIGLSTALELQRR 49
K+ ++GAG GL+ A LQR+
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQ 715
>gnl|CDD|99988 cd03818, GT1_ExpC_like, This family is most closely related to the
GT1 family of glycosyltransferases. ExpC in Rhizobium
meliloti has been shown to be involved in the
biosynthesis of galactoglucan (exopolysaccharide II).
Length = 396
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 45 ELQRRFPNCDVTVIADKFNMDTTSDGAA 72
L R P+ V ++ D S GA
Sbjct: 236 RLLRARPDARVVIVGG----DGVSYGAP 259
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 25.9 bits (57), Expect = 3.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 30 VAILGAGIIGLSTALELQ 47
+AI+GAGI GL+ A L+
Sbjct: 4 IAIVGAGIAGLAAAYALR 21
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 25.9 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 30 VAILGAGIIGLSTALELQRR 49
+A++G G GL+ ALEL R
Sbjct: 2 LAVIGGGPAGLAIALELARP 21
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on
a flavinoid cofactor.
Length = 400
Score = 25.8 bits (57), Expect = 3.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
+ V I+GAG GLS + L++
Sbjct: 1 YPVVIIGAGQAGLSVSYYLKQA 22
>gnl|CDD|236227 PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated.
Length = 302
Score = 25.9 bits (58), Expect = 3.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQR-----------RFPNCDVTVIADKFNMDTTSDGAA 72
M S KVAI+G+G IG +++ R P D A + + T+++G
Sbjct: 1 MMSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGID 60
Query: 73 GL 74
GL
Sbjct: 61 GL 62
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 25.7 bits (57), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 30 VAILGAGI-IGLSTALELQRRFPNCDVTVIAD 60
V + GAG IG TAL R +V V +D
Sbjct: 318 VVVTGAGSGIGRETALAFARE--GAEV-VASD 346
>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family, including threonine dehydrogenase.
The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 319
Score = 25.7 bits (57), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KVA+LG G +GL A L DV ++
Sbjct: 158 KVAVLGDGKLGLLIAQVL--ALTGPDVVLV 185
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 25.7 bits (57), Expect = 3.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 30 VAILGAGIIGLSTALELQRRF-PNCDVTVIADKFNMDTTSDGAAG-LFEPSPNFMGP 84
VA++GAG+ GL+ A L + N VT D+ + TS G ++E PN P
Sbjct: 15 VAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP 71
>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase
A; Provisional.
Length = 312
Score = 25.9 bits (57), Expect = 3.4
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 30 VAILGAGIIGLSTALELQR-RFP 51
+ ILGAG++G A LQ FP
Sbjct: 139 IGILGAGVLGSKVAQSLQTWGFP 161
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRR 49
M + V ++GAG+ GL A EL
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADA 26
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 30 VAILGAGIIGLSTALEL 46
I+G G+ GL AL+L
Sbjct: 12 PVIVGGGLAGLMAALKL 28
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 25.6 bits (57), Expect = 3.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 29 KVAILGAGIIGL--STALELQRRFPNCDVTVI 58
+ I+G G IGL ++ VTV+
Sbjct: 175 SLVIVGGGYIGLEFASVF---AAL-GSKVTVV 202
>gnl|CDD|239800 cd04272, ZnMc_salivary_gland_MPs, Zinc-dependent metalloprotease,
salivary_gland_MPs. Metalloproteases secreted by the
salivary glands of arthropods.
Length = 220
Score = 25.8 bits (57), Expect = 3.6
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 47 QRRFPNCDVTVIADKFNMDTTSDGAA 72
+R + N DV + +M T S G+
Sbjct: 89 KRDYFNPDVVFLVTGLDMSTYSGGSL 114
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases.
L-lactate dehydrogenases (LDH) are tetrameric enzymes
catalyzing the last step of glycolysis in which
pyruvate is converted to L-lactate. This subgroup is
composed predominantly of bacterial LDHs and a few
fungal LDHs. Bacterial LDHs may be non-allosteric or
may be activated by an allosteric effector such as
fructose-1,6-bisphosphate. LDHs are part of the
NAD(P)-binding Rossmann fold superfamily, which
includes a wide variety of protein families including
the NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 308
Score = 25.5 bits (57), Expect = 3.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 29 KVAILGAGIIGLSTA 43
KVAI+GAG +G +TA
Sbjct: 2 KVAIVGAGFVGSTTA 16
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 25.9 bits (57), Expect = 3.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALEL 46
P + + V ++G G+ G++ ALEL
Sbjct: 115 PLEEIKVEVSKSVLVIGGGVAGITAALEL 143
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 492
Score = 25.8 bits (57), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 75
V ++GAGI GL+ A L +R VT+ G AG F
Sbjct: 4 VVVIGAGIAGLTAAALLAKR--GYRVTL----LEQHAQPGGCAGTF 43
>gnl|CDD|235824 PRK06545, PRK06545, prephenate dehydrogenase; Validated.
Length = 359
Score = 25.6 bits (57), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIA 59
V I+G G+IG S AL ++ P DV +I
Sbjct: 3 VLIVGLGLIGGSLALAIKAAGP--DVFIIG 30
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 25.5 bits (56), Expect = 4.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
+G ++ I +G ST + + R CDV VIA
Sbjct: 160 LGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIA 195
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 25.8 bits (57), Expect = 4.0
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
V ++G G GL A+E V +++ + A G
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPPKRGHTVAAQG 50
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 25.8 bits (57), Expect = 4.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
S KVAI+GAG GL+ A L R+ DVT+
Sbjct: 192 SGKKVAIIGAGPAGLTAAYYLLRK--GHDVTI 221
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 25.3 bits (56), Expect = 4.4
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV----------IADKFN 63
KV ++GAG +G A L + ++T+ +A +
Sbjct: 180 KVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG 223
>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase. Glucose dehydrogenase
(GlcDH), a member of the medium chain
dehydrogenase/zinc-dependent alcohol dehydrogenase-like
family, catalyzes the NADP(+)-dependent oxidation of
glucose to gluconate, the first step in the
Entner-Doudoroff pathway, an alternative to or
substitute for glycolysis or the pentose phosphate
pathway. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossman fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
Length = 355
Score = 25.3 bits (56), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
+ +LGAG IGL AL L+ R
Sbjct: 174 RRALVLGAGPIGLLAALLLRLR 195
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 25.3 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+A++GAG+IGL + RR +VT++
Sbjct: 185 KLAVIGAGVIGLELG-SVWRRL-GAEVTIL 212
>gnl|CDD|221102 pfam11383, DUF3187, Protein of unknown function (DUF3187). This
family of proteins with unknown function appear to be
restricted to Proteobacteria. These proteins are likely
to be outer membrane proteins.
Length = 320
Score = 25.3 bits (56), Expect = 5.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 54 DVTVIADKFNMDTTSDGAAGL 74
+++VI + FNMD + D A L
Sbjct: 294 EISVIENIFNMDNSPDIAFHL 314
>gnl|CDD|109875 pfam00837, T4_deiodinase, Iodothyronine deiodinase. Iodothyronine
deiodinase converts thyroxine (T4) to
3,5,3'-triiodothyronine (T3).
Length = 237
Score = 25.1 bits (55), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 40 LSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFE 76
L A L +R P C V+AD M S A G FE
Sbjct: 170 LQAARLLLQRAPGC--RVVADT--MRNQSSQAYGAYFE 203
>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like.
This group is related to formaldehyde dehydrogenase
(FDH), which is a member of the zinc-dependent/medium
chain alcohol dehydrogenase family. This family uses
NAD(H) as a cofactor in the interconversion of alcohols
and aldehydes, or ketones. Another member is identified
as a dihydroxyacetone reductase. Like the zinc-dependent
alcohol dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), tetrameric FDHs
have a catalytic zinc that resides between the catalytic
and NAD(H)binding domains and a structural zinc in a
lobe of the catalytic domain. Unlike ADH, where
NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly
bound redox cofactor (similar to nicotinamide proteins).
The medium chain alcohol dehydrogenase family (MDR) has
a NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 345
Score = 25.3 bits (56), Expect = 5.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 30 VAILGAGIIGLSTALELQRRFP 51
VAI+GAG +GL+ L Q P
Sbjct: 170 VAIVGAGPVGLAALLTAQLYSP 191
>gnl|CDD|132512 TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl
transferase protein HpnI. This family of genes include
a glycosyl transferase, group 2 domain (pfam00535) which
are responsible, generally for the transfer of
nucleotide-diphosphate sugars to substrates such as
polysaccharides and lipids. The member of this clade
from Acidithiobacillus ferrooxidans ATCC 23270
(AFE_0974) is found in the same locus as squalene-hopene
cyclase (SHC, TIGR01507) and other genes associated with
the biosynthesis of hopanoid natural products.
Similarly, in Ralstonia eutropha JMP134 (Reut_B4902)
this gene is adjacent to HpnAB, IspH and HpnH
(TIGR03470), although SHC itself is elsewhere in the
genome. Notably, this gene (here named HpnI) and three
others form a conserved set (HpnIJKL) which occur in a
subset of all genomes containing the SHC enzyme. This
relationship was discerned using the method of partial
phylogenetic profiling. This group includes Zymomonas
mobilis, the organism where the initial hopanoid
biosynthesis locus was described consisting of the genes
HpnA-E and SHC (HpnF). Continuing past SHC are found a
phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and
another radical SAM enzyme (ZMO0874), HpnH. Although
discontinuous in Z. mobilis, we continue the gene symbol
sequence with HpnIJKL. Hopanoids are known to feature
polar glycosyl head groups in many organisms.
Length = 373
Score = 25.0 bits (55), Expect = 5.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 45 ELQRRFPNCDVTVIAD 60
L+ FP+ D+ ++ D
Sbjct: 90 RLRADFPDADIDLVID 105
>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly
homologous RalA and RalB. The Ral (Ras-like) subfamily
consists of the highly homologous RalA and RalB. Ral
proteins are believed to play a crucial role in
tumorigenesis, metastasis, endocytosis, and actin
cytoskeleton dynamics. Despite their high sequence
similarity (>80% sequence identity), nonoverlapping and
opposing functions have been assigned to RalA and RalBs
in tumor migration. In human bladder and prostate
cancer cells, RalB promotes migration while RalA
inhibits it. A Ral-specific set of GEFs has been
identified that are activated by Ras binding. This
RalGEF activity is enhanced by Ras binding to another
of its target proteins, phosphatidylinositol 3-kinase
(PI3K). Ral effectors include RLIP76/RalBP1, a
Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a
heterooctomeric protein complex that is involved in
tethering vesicles to specific sites on the plasma
membrane prior to exocytosis. In rat kidney cells, RalB
is required for functional assembly of the exocyst and
for localizing the exocyst to the leading edge of
migrating cells. In human cancer cells, RalA is
required to support anchorage-independent proliferation
and RalB is required to suppress apoptosis. RalA has
been shown to localize to the plasma membrane while
RalB is localized to the intracellular vesicles. Most
Ras proteins contain a lipid modification site at the
C-terminus, with a typical sequence motif CaaX, where a
= an aliphatic amino acid and X = any amino acid. Lipid
binding is essential for membrane attachment, a key
feature of most Ras proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 163
Score = 25.1 bits (55), Expect = 5.6
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 28 HKVAILGAGIIGLSTALELQ 47
HKV ++G+G +G S AL LQ
Sbjct: 1 HKVIMVGSGGVGKS-ALTLQ 19
>gnl|CDD|238872 cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily. SGNH
hydrolases are a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 191
Score = 24.9 bits (55), Expect = 5.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 29 KVAILGAGII---GLSTALE--LQRRFPNCDVTVIADKFNM----DTTSDGAA 72
++ +G I G +E L R+P +T N+ DT SD AA
Sbjct: 3 RIVFIGNSITDRGGYVGYVETYLAARYPELKLTFR----NLGWSGDTVSDLAA 51
>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 25.0 bits (55), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
K+ ++GAG +G A +L + +VT IAD+
Sbjct: 2 MKILVIGAGGVGSVVAHKLAQNGDG-EVT-IADR 33
>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid
metabolism].
Length = 307
Score = 25.3 bits (56), Expect = 5.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 28 HKVAILGAGIIG 39
KVA++GAG++G
Sbjct: 4 KKVAVIGAGVMG 15
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 25.2 bits (56), Expect = 5.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V ++G G GL A+ V +I
Sbjct: 1 YDVIVIGGGAAGLMAAISA--AKRGRRVLLI 29
>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate
dehydrogenase N-terminus. NAD-dependent
glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the
interconversion of dihydroxyacetone phosphate and
L-glycerol-3-phosphate. This family represents the
N-terminal NAD-binding domain.
Length = 157
Score = 24.9 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN 52
K+A+LGAG G + A L R
Sbjct: 1 KIAVLGAGSWGTALAKVLARNGHE 24
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace
amines. In lower eukaryotes such as aspergillus and in
bacteria the main role of amine oxidases is to provide
a source of ammonium. PAOs in plants, bacteria and
protozoa oxidase spermidine and spermine to an
aminobutyral, diaminopropane and hydrogen peroxide and
are involved in the catabolism of polyamines. Other
members of this family include tryptophan
2-monooxygenase, putrescine oxidase, corticosteroid
binding proteins and antibacterial glycoproteins.
Length = 444
Score = 24.8 bits (54), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 39 GLSTALELQRRFPNCDVTVI 58
GL+ A EL R DVTV+
Sbjct: 3 GLAAARELLRAG--FDVTVL 20
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 25.0 bits (55), Expect = 6.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 23 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ + V I+GAG G+ A+E P V+
Sbjct: 1 MQQHRYDVVIVGAGGAGMRAAIEAG---PRARTAVL 33
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 24.7 bits (55), Expect = 7.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 20 NPKVMGSNHKVAILGAGIIGLSTALELQR 48
+P V + KVA++G+G GL+ A +L R
Sbjct: 136 DPPVKRTGKKVAVVGSGPAGLAAADQLAR 164
>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase. Putative
L-iditol 2-dehydrogenase based on annotation of some
members in this subgroup. L-iditol 2-dehydrogenase
catalyzes the NAD+-dependent conversion of L-iditol to
L-sorbose in fructose and mannose metabolism. This
enzyme is related to sorbitol dehydrogenase, alcohol
dehydrogenase, and other medium chain
dehydrogenase/reductases. The zinc-dependent alcohol
dehydrogenase (ADH-Zn)-like family of proteins is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. This group is
also called the medium chain dehydrogenases/reductase
family (MDR) to highlight its broad range of activities
and to distinguish from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal GroES-like catalytic
domain. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability. ADH-like
proteins typically form dimers (typically higher
plants, mammals) or tetramers (yeast, bacteria), and
generally have 2 tightly bound zinc atoms per subunit.
The active site zinc is coordinated by a histidine, two
cysteines, and a water molecule. The second zinc seems
to play a structural role, affects subunit interactions,
and is typically coordinated by 4 cysteines.
Length = 343
Score = 24.9 bits (55), Expect = 7.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 25 GSNHKVAILGAGIIGL 40
V ++GAG IGL
Sbjct: 164 KPGDTVLVIGAGPIGL 179
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 25.0 bits (55), Expect = 7.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 29 KVAILGAGIIGLSTA 43
KVAI+GAG GL+ A
Sbjct: 20 KVAIIGAGPAGLAAA 34
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase;
Validated.
Length = 287
Score = 24.9 bits (55), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
V + GAG++G A Q F DVT+
Sbjct: 5 NVTVAGAGVLGSQIA--FQTAFHGFDVTI 31
>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 24.4 bits (54), Expect = 8.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KVA++GAG +G A R +V ++
Sbjct: 1 KVAVIGAGTMGAGIAQVFARA--GLEVVLV 28
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum)
have a conserved pathway from two molecules
geranylgeranyl-PP to one of all-trans-lycopene. Members
of this family are the enzyme pytoene desaturase (also
called phytoene dehydrogenase). This model does not
include the region of the chloroplast transit peptide
in plants. A closely related family, excluded by this
model, is zeta-carotene desaturase, another enzyme in
the same pathway [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 453
Score = 24.8 bits (54), Expect = 8.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 29 KVAILGAGIIGLSTA 43
+VAI GAG+ GLS A
Sbjct: 1 RVAIAGAGLAGLSCA 15
>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine
dehydrogenase (TDH) catalyzes the zinc-dependent
formation of 2-amino-3-ketobutyrate from L-threonine,
via NAD(H)-dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and have 2 tightly
bound zinc atoms per subunit. Sorbitol and aldose
reductase are NAD(+) binding proteins of the polyol
pathway, which interconverts glucose and fructose.
Length = 334
Score = 24.8 bits (55), Expect = 8.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA-DKFNMDTTSD-GAAGLFEPSPN 80
V + GAG IGL A L+ VTV ++ ++ GA +PS
Sbjct: 162 SVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKKLGATETVDPSRE 214
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 24.3 bits (54), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 29 KVAILGAGIIGLS---TALELQRRFPNCDVTVI 58
KV ILGAG++G + AL L +VTV+
Sbjct: 170 KVVILGAGVVGENAARVALGL-----GAEVTVL 197
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 24.4 bits (54), Expect = 9.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 26 SNHKVAILGAGIIGLSTALELQR 48
S V I+G G+ G + AL L R
Sbjct: 2 SRMDVIIVGGGMAGATLALALSR 24
>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This
group contains proteins identified as sorbitol
dehydrogenases and other sugar dehydrogenases of the
medium-chain dehydrogenase/reductase family (MDR), which
includes zinc-dependent alcohol dehydrogenase and
related proteins. Sorbitol and aldose reductase are
NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose. Sorbitol
dehydrogenase is tetrameric and has a single catalytic
zinc per subunit. NAD(P)(H)-dependent oxidoreductases
are the major enzymes in the interconversion of alcohols
and aldehydes, or ketones. Related proteins include
threonine dehydrogenase, formaldehyde dehydrogenase, and
butanediol dehydrogenase. The medium chain alcohol
dehydrogenase family (MDR) has a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit. Horse
liver alcohol dehydrogenase is a dimeric enzyme and each
subunit has two domains. The NAD binding domain is in a
Rossmann fold and the catalytic domain contains a zinc
ion to which substrates bind. There is a cleft between
the domains that closes upon formation of the ternary
complex.
Length = 343
Score = 24.5 bits (54), Expect = 9.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 27 NHKVAILGAGIIGL 40
V ++GAG IGL
Sbjct: 160 GDTVVVIGAGTIGL 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,458,364
Number of extensions: 352754
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 208
Length of query: 90
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 32
Effective length of database: 8,365,070
Effective search space: 267682240
Effective search space used: 267682240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)