RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1704
(90 letters)
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 76.6 bits (188), Expect = 2e-18
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 23 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFM 82
+M S +V +LG+G+IGLS+AL L R+ V ++A D +S A + +
Sbjct: 2 MMHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPW--AGANW 57
Query: 83 GPDLETT 89
P + T
Sbjct: 58 TPFMTLT 64
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 74.7 bits (183), Expect = 9e-18
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEPSP 79
+V ++GAG+IGLSTAL + R+ + D+ V AD+F TT+D AAGL++P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYL 56
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 50.4 bits (120), Expect = 5e-09
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
S+ ++ I+G GI GL+ A +R FP+ ++T++
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLL 35
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 49.7 bits (118), Expect = 9e-09
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDTTSDGAAGLFEPSPNFMG 83
V +LG GI GL+ + L R V ++ +++ + + +FE P +
Sbjct: 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIR 62
Query: 84 P 84
P
Sbjct: 63 P 63
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 47.4 bits (113), Expect = 5e-08
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++G G+ G++TA L+ P+ +T+I
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLI 33
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 47.0 bits (111), Expect = 8e-08
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
A S +VA++GAG+ GL+ A +L+ +VTV
Sbjct: 4 SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVF 42
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 46.4 bits (110), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 75
+ + + I+GAG G STAL L RR +VTV+ D + + + + +
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARR-GYTNVTVL-DPYPVPSAISAGNDVNKVI 55
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 46.1 bits (110), Expect = 1e-07
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 10 VHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
+H + K ++GAGI GLS A+ L++ D V
Sbjct: 6 IHHHHHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDV 51
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 46.3 bits (110), Expect = 1e-07
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRF-PNCDVTVI 58
M + V ILGAG G+ A E++ +VT+I
Sbjct: 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 45.5 bits (108), Expect = 2e-07
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
HS+ + + S+ VAI+G G +GL+ A LQ+ DV+V
Sbjct: 10 HSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQN--GIDVSV 54
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 45.3 bits (108), Expect = 3e-07
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
A + M +++ ++G GIIG + A L + N + +
Sbjct: 9 ARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALF 46
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 45.2 bits (106), Expect = 3e-07
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+ ++GAG GL A +L++ P + ++
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDIV 31
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 45.1 bits (107), Expect = 3e-07
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 75
M ++ V ++G G +GL+TA ++ R V V+ ++ N + + GA +
Sbjct: 1 MTESYDVVVVGGGPVGLATAWQVAER--GHRVLVL-ERHTFFNENGGTSGAERHW 52
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 44.5 bits (105), Expect = 5e-07
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ + ++AI+GAG GL+ + L++ D T++
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAG-FHDYTIL 36
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 44.0 bits (104), Expect = 8e-07
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ KV ++G G G + A ++ P+ +VT+I
Sbjct: 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLI 33
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 43.0 bits (101), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ VA++G GI GL+ A L+ R D ++
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGT--DAVLL 45
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 42.7 bits (101), Expect = 3e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 24 MGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTV 57
M ++A++G I GL+ AL L+ DV V
Sbjct: 1 MSPTTDRIAVVGGSISGLTAALMLRDA--GVDVDV 33
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 42.6 bits (100), Expect = 3e-06
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVI 58
V I+G GI GL+ A +++ ++T++
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV 40
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 42.6 bits (99), Expect = 3e-06
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
H S P+ ++ I+GAG GL L L++ + DVTV D+
Sbjct: 6 HHHHHSSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDR 54
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 42.7 bits (101), Expect = 3e-06
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
M + I GAGI GLS AL L + VT+
Sbjct: 1 MSEPIDILIAGAGIGGLSCALALHQA-GIGKVTL 33
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 42.2 bits (99), Expect = 4e-06
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+H V +LG G GL +A ELQ+ VTV+
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKA--GYKVTVL 40
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 41.8 bits (97), Expect = 6e-06
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V ++GAG GL A L + ++
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIV 40
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTS 68
M ++ ++GAG++GL+ A L +V V A+ T+S
Sbjct: 1 MSTDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSS 45
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 41.6 bits (98), Expect = 6e-06
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62
+ I+G+G +G + R +V + D
Sbjct: 5 LIIIGSGSVGAAAGYYATRA--GLNVLMT-DAH 34
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 40.4 bits (95), Expect = 1e-05
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV 57
+ + G G GL+ A+ L++ DV +
Sbjct: 13 RAEVAGGGFAGLTAAIALKQN--GWDVRL 39
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 40.6 bits (95), Expect = 1e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V I+GAG+ GLS A L VTV+
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVL 62
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 40.1 bits (94), Expect = 2e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 61
KV +LG L+ A L+R + DV VI
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 39.9 bits (92), Expect = 3e-05
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+ I+GAG GL A+ L + +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELGYK-NWHLY 39
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 39.3 bits (90), Expect = 5e-05
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 74
+ ++GAG +G + A L++ P + ++ ++ + +GA L
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLV-EEGGL-PNEEGATIL 81
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 39.2 bits (90), Expect = 5e-05
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
P PK ++ I+GAGI GL L R DVT++
Sbjct: 41 PGPPK------RILIVGAGIAGLVAGDLLTRA--GHDVTIL 73
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 38.8 bits (91), Expect = 6e-05
Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLF 75
++ V ++GAG +G++ +L ++ ++ D + + + G +
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRII 51
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 38.6 bits (90), Expect = 6e-05
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
++GAG++GL+ A L+ V V+
Sbjct: 26 YVVVGAGVVGLAAAYYLKVW-SGGSVLVV 53
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 38.6 bits (88), Expect = 8e-05
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIAD 60
H ++ P + G K+ I+G G G A L + D+T++
Sbjct: 9 HHSSGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQA 59
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 38.2 bits (88), Expect = 8e-05
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 14 AQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
Q+ N + I+GAG G A L V ++
Sbjct: 16 EQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS--GQRVLIV 58
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 38.1 bits (89), Expect = 8e-05
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ ++GAG+ GL L R ++ V+
Sbjct: 2 RAVVVGAGLGGLLAGAFLARN--GHEIIVL 29
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 38.0 bits (89), Expect = 1e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ I+G G GL+TA L + +V V+
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVL 52
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 37.7 bits (88), Expect = 1e-04
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
S+ V ++GAG G+ A EL+ +V V+
Sbjct: 10 SDAAVIVVGAGPAGMMLAGELRLA--GVEVVVL 40
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A*
2yr5_A* 3ayl_A*
Length = 721
Score = 37.9 bits (86), Expect = 2e-04
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 26 SNHKVAILGAGIIGLSTALELQR 48
N+++AI+G G G++ EL R
Sbjct: 55 GNYRIAIVGGGAGGIAALYELGR 77
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
M + V ++G GI G++ A L +V V+
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHDS--GLNVVVL 33
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 36.9 bits (86), Expect = 2e-04
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
S+ V ++GAG GL A EL+ DV V+
Sbjct: 11 SDASVIVVGAGPAGLMLAGELRLG--GVDVMVL 41
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 37.0 bits (84), Expect = 3e-04
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGL 74
V I+G G G TA L+ F + DVT++ N+ G A
Sbjct: 4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG-NVRRIGVGEATF 49
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 36.6 bits (85), Expect = 3e-04
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+N V ++G G +GL A EL+ V+
Sbjct: 40 NSNADDAALTTDVVVVGGGPVGLMLAGELRAG--GVGALVL 78
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.2 bits (82), Expect = 4e-04
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
+AI+G GI GLS A L V + DK S G+ G
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGH--QVHLF-DK------SRGSGG 39
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 35.9 bits (82), Expect = 5e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+GAG GLS A L P+ +T++
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIV 110
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 35.9 bits (81), Expect = 6e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
+V I+GAG+ G A L+R+ + DK
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling;
HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 35.7 bits (82), Expect = 6e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 72
M KVAI+G+G IG +++ R ++ + D SDG A
Sbjct: 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGI---DAASDGLA 46
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 35.9 bits (83), Expect = 7e-04
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
VAI+GAG GL+ A L++ V VI
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA--GLSVAVI 34
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.7 bits (83), Expect = 7e-04
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I G GI G A L R+ V V+
Sbjct: 9 VLINGCGIGGAMLAYLLGRQ--GHRVVVV 35
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.6 bits (81), Expect = 8e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+GAG GLS A + + P+ V +I
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCII 96
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 35.5 bits (82), Expect = 8e-04
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 7 EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
HS+ + V ILG G +G++ AL+L R V+
Sbjct: 6 HHHHHSSGLVPRGSHMNAPIETDVLILGGGPVGMALALDLAHR--QVGHLVV 55
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 35.3 bits (81), Expect = 0.001
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 10 VHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
+ A+ PA+ + + S V I+G G GL+ A +L FP+ ++ ++
Sbjct: 15 IAPASPLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQL-AAFPDIRTCIV-EQ 64
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.4 bits (81), Expect = 0.001
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ K+ I+GAG G +L + V +I
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEK--GHQVHII 32
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 35.0 bits (81), Expect = 0.001
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN----MDTTSDGAAGLFEPSPNFMG 83
+KVAI+G G IG TA+ L + + F +D++ A GL
Sbjct: 495 NKVAIIGCGGIGFDTAMYLSQP--GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552
Query: 84 PDLETT 89
+
Sbjct: 553 SPRQIV 558
Score = 30.8 bits (70), Expect = 0.040
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 16 SCPANPKVM----------GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
SC NP+ +A++GAG GL+ A+ R VT+
Sbjct: 352 SCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAAR--GHQVTLF 402
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 34.8 bits (80), Expect = 0.001
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 26 SNHKVAILGAGIIGLSTALELQRR 49
+HKVAI+GAG G+ A+ L+
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDF 26
Score = 24.8 bits (54), Expect = 4.7
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
G+H + N + + ++G G A +L + D+ +
Sbjct: 152 GIHYSEIEDFDNF----NKGQYVVIGGNESGFDAAYQLAKN--GSDIALY 195
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 34.7 bits (80), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++GAG+ GLSTA+ L R+ V V+
Sbjct: 8 VLVVGAGLGGLSTAMFLARQ--GVRVLVV 34
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 23 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ ++ ++G GI+G++ A EL +R +VTVI
Sbjct: 1 MLPEKSEIVVIGGGIVGVTIAHELAKRG--EEVTVI 34
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 34.7 bits (78), Expect = 0.002
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRF-PNCDVTVIAD 60
+ I+G G G A L R ++T+I
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIES 39
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 34.7 bits (80), Expect = 0.002
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K ++GAG+ GL +A L + +V V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKA--GHEVEVF 29
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIA 59
V I+G+G GLS AL L + V V++
Sbjct: 11 VLIIGSGAAGLSLALRLADQHQ---VIVLS 37
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 34.7 bits (79), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
I+G+G+ G A EL++ N V VI
Sbjct: 3 DYIIVGSGLFGAVCANELKKL--NKKVLVI 30
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.6 bits (78), Expect = 0.002
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 8 FGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
FG++ + P KV I+G+G+ GL+ A +LQ DVT++
Sbjct: 264 FGIYKRIKPLPTKKT-----GKVIIIGSGVSGLAAARQLQSFG--MDVTLL 307
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 34.4 bits (78), Expect = 0.002
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
+ M + + ++G+G GL+ A + + + V V+ ++
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQL-DKRVLVL-ER 39
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.1 bits (79), Expect = 0.002
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Query: 1 MFEVFSEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V SE ++ ++ I+G G IG S A L++ + V +I
Sbjct: 221 IRSVMSELQ------------RLEKPYRRIMIVGGGNIGASLAKRLEQTY---SVKLI 263
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 34.1 bits (79), Expect = 0.002
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KV I+G A + R V +I
Sbjct: 2 KVIIIGGETTAYYLARSMLSR--KYGVVII 29
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ KV I+GAGI GL A L + D V+
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLH-QNGIQDCLVL 38
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.0 bits (78), Expect = 0.003
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ ++G G GL A +L V ++
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA--GKKVLLL 30
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 33.8 bits (77), Expect = 0.003
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 6 SEFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 62
S H ++ P + + KVAI+G G G L L + DVT+ F
Sbjct: 4 SHHHHHHSSGLVPRGSHM--TRSKVAIIGGGPAGSVAGLTLHKL--GHDVTIYERSAF 57
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 33.4 bits (77), Expect = 0.003
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K + I G G +G A V V+
Sbjct: 18 KSK----YIVIFGCGRLGSLIANLASSS--GHSVVVV 48
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 33.7 bits (77), Expect = 0.004
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 29 KVAILGAGIIGLSTALELQRR-FPNCDVTVI 58
+V ++GAG+ G+S A L D+ ++
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGIT--DLLIL 34
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 33.6 bits (77), Expect = 0.004
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 22 KVMGSNHKVAILGAGIIGLSTA--LELQRRFPNCDVTVI 58
K+ + I+G G +G A L + R +V +
Sbjct: 175 KISREVKSITIIGGGFLGSELACALGRKARALGTEVIQL 213
Score = 25.9 bits (57), Expect = 1.8
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
S+ ++G G + A ++ R P V ++++
Sbjct: 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSE 44
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 33.5 bits (77), Expect = 0.004
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++ ++G G IG + + ++ + D
Sbjct: 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTD 35
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 33.4 bits (76), Expect = 0.005
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 24 MGSNHK---VAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 62
M + + + ++G G G + A + R V ++ + F
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMR--GHRVLLLEREAF 41
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 33.0 bits (75), Expect = 0.006
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
+ + K+AI+GAG GL TA L VT+
Sbjct: 3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTL 36
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 33.0 bits (75), Expect = 0.006
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDV 55
+ + + V ++G G GL+ +L +
Sbjct: 24 VISPPTNIEDTDK-DGPWDVIVIGGGYCGLTATRDLTVAGFKTLL 67
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 33.0 bits (76), Expect = 0.007
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++GAGI G ST L V V+
Sbjct: 11 DYLVIGAGIAGASTGYWLSAH---GRVVVL 37
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 32.9 bits (75), Expect = 0.007
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ ++G+G G TA L + V +
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIY 37
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 32.7 bits (75), Expect = 0.008
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K I+G G+IG L +V + D
Sbjct: 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCD 56
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 32.7 bits (75), Expect = 0.008
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
+ AI+G G +G A L + +
Sbjct: 10 RAAIIGLGRLGERHARHLVNKIQGVKLVAACA 41
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 32.5 bits (75), Expect = 0.009
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
M + I+G G+ G + A E ++ + +I
Sbjct: 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITA 37
Score = 31.0 bits (71), Expect = 0.029
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+V +LGAG+IG A +L + V+
Sbjct: 147 RVLLLGAGLIGCEFANDLSSG--GYQLDVV 174
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 32.3 bits (73), Expect = 0.011
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
M + A+LG G G + A L + V
Sbjct: 1 MIESKTYAVLGLGNGGHAFAAYLALK--GQSVLAWD 34
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 32.5 bits (73), Expect = 0.011
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 FGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDV 55
FG++ + P KV I+G+G+ GL+ A +LQ + +
Sbjct: 93 FGIYKRIKPLPTKKT-----GKVIIIGSGVSGLAAARQLQSFGMDVTL 135
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 32.1 bits (73), Expect = 0.013
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 62
V ++GAG G A + + V ++ KF
Sbjct: 8 VLVIGAGPAGTVAASLVNKS--GFKVKIVEKQKF 39
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 31.8 bits (73), Expect = 0.014
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K I+G GI+G+ A + ++
Sbjct: 148 KAFIIGGGILGIELAQAIIDS--GTPASIG 175
Score = 26.0 bits (58), Expect = 1.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K+ ILGAG G S A + D+T+I
Sbjct: 11 KILILGAGPAGFSAAKAALGK--CDDITMINS 40
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 31.3 bits (71), Expect = 0.014
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ ++GAG IG A L+ N VTV
Sbjct: 6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVA 35
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.9 bits (72), Expect = 0.015
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 16 SCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ + G + KV ILGAG IG + A +L+ F DV +
Sbjct: 5 VHHHHHHIEGRHMKVLILGAGNIGRAIAWDLKDEF---DVYIG 44
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 31.7 bits (73), Expect = 0.016
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
V I+G G+ GLS R V
Sbjct: 4 QGKNVVIIGLGLTGLSCVDFFLAR--GVTPRV 33
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 31.7 bits (72), Expect = 0.017
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
+ K+A+LGAG +S A L R D+T+
Sbjct: 186 YSAKIALLGAGPASISCASFL-ARLGYSDITI 216
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 31.8 bits (73), Expect = 0.018
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
N KV +LG G + A L + VTV
Sbjct: 8 ENKKVLVLGLARSGEAAARLLAKL--GAIVTV 37
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 31.5 bits (72), Expect = 0.018
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++ ++GA I + R +V +
Sbjct: 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMS 32
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.4 bits (72), Expect = 0.021
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 73
+ I+G+GI GLS + L+R + K ++ A G
Sbjct: 2 IYIIGSGIAGLSAGVALRRA---GKKVTLISKRIDGGSTPIAKG 42
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.1 bits (71), Expect = 0.023
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
N + A++G G G S EL R +V +
Sbjct: 6 NKQFAVIGLGRFGGSIVKELHRM--GHEVLAV 35
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 31.3 bits (71), Expect = 0.024
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
+ I G G G R P+ + D
Sbjct: 4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAACD 35
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics,
PANE, unknown function, cytoplasm, NADP,
oxidoreductase; 1.90A {Bacillus subtilis}
Length = 307
Score = 31.1 bits (71), Expect = 0.024
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+ I+G G +GL A L DVTV+
Sbjct: 4 KIGIIGGGSVGLLCAYYLSL---YHDVTVVT 31
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 31.5 bits (71), Expect = 0.025
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
VAI+G G G+ ALELQ+ V +I ++ +
Sbjct: 110 DVAIIGGGPAGIGAALELQQ---YLTVALIEERGWL 142
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 31.3 bits (71), Expect = 0.026
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 6 SEFGVHSAAQSCPANPKVMGSNHKV--AILGAGIIGLSTALELQRRFPNCDVTVIAD 60
S+ A + P + M + + AI+G G L+ L + + +
Sbjct: 60 SQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS 116
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 31.0 bits (71), Expect = 0.027
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K + K+ ++G G S A L+R ++ ++
Sbjct: 31 KDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMV 67
Score = 28.7 bits (65), Expect = 0.21
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++G G IG+ L+ R +VT++
Sbjct: 189 HATVIGGGFIGVEMVENLRER--GIEVTLV 216
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.0 bits (71), Expect = 0.029
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
G H + + +++ V ++GAGI GL + + V
Sbjct: 3 GQHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQ--GLTVRAF 50
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 31.2 bits (70), Expect = 0.031
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 10 VHSA--AQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
H + + P G K+AI+G G ++L +P+ +I
Sbjct: 208 FHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMI 258
Score = 27.7 bits (61), Expect = 0.45
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 11 HSAAQSCPANPKVMGSN-----HKVAILGAGIIGLSTALELQRR 49
H ++ P + + H + +G G ++ A+ LQ R
Sbjct: 9 HHSSGLVPRGSHMTQATATAVVHDLIGVGFGPSNIALAIALQER 52
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP:
a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 31.1 bits (71), Expect = 0.031
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+ +LG G +G L ++ +V
Sbjct: 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWL 30
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 30.8 bits (70), Expect = 0.034
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 28 HKVAILGAGIIGLSTALELQRR 49
V ++G G GLS L+R
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRS 25
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 30.7 bits (70), Expect = 0.036
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
+AI+GAG GL A+ + PN + +I+
Sbjct: 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 30.8 bits (68), Expect = 0.036
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 29 KVAILGAGIIGLSTALELQRRF----------PNCDVTVIADK 61
++ I+G G G TA L P ++T+I
Sbjct: 9 EIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESP 51
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 30.7 bits (70), Expect = 0.036
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
+ + + +LG G +GL T
Sbjct: 155 TEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLA 190
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.6 bits (70), Expect = 0.040
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 24 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 58
M V ++GAG IGL +TA +V V+
Sbjct: 139 MPDKKHVVVIGAGFIGLEFAATARAK-----GLEVDVV 171
Score = 25.6 bits (57), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
N V I GAG G A+ L++ + +I D
Sbjct: 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALIND 34
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 30.8 bits (70), Expect = 0.041
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP 77
VAI+GAG GL L + D ++ ++ D AG+ E
Sbjct: 5 VAIIGAGPSGLLLGQLLHKA--GIDNVIL-ERQTPDYVLGRIRAGVLEQ 50
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 0.043
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 21 PKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
P + + A++G G I + L++ ++ + D
Sbjct: 7 PPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCD 46
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.3 bits (69), Expect = 0.050
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 24 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 58
+ +++++ ++G G IGL +TA++ N VT++
Sbjct: 146 LIADNRLVVIGGGYIGLEVAATAIKA-----NMHVTLL 178
Score = 29.5 bits (67), Expect = 0.099
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
M +N V I+G G+ G+ A L+ ++ ++ D
Sbjct: 1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 37
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 30.2 bits (69), Expect = 0.050
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 24 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 58
+ ++ I+G G+IGL +TA V+++
Sbjct: 142 LRPQSRLLIVGGGVIGLELAATARTA-----GVHVSLV 174
Score = 25.2 bits (56), Expect = 3.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
V +LGAG+ +S EL++ +TV+ D
Sbjct: 10 VVVLGAGLASVSFVAELRQAGYQGLITVVGD 40
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 30.2 bits (69), Expect = 0.052
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+G G IGL A L V +I
Sbjct: 145 EAIIIGGGFIGLELAGNLAEA--GYHVKLI 172
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 30.4 bits (69), Expect = 0.057
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++A+ GAG IG A + P+ ++ VIAD
Sbjct: 6 RIALFGAGRIGHVHAANIAAN-PDLELVVIAD 36
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 30.2 bits (69), Expect = 0.060
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 24 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 58
S ++ I+G G+IG +TA +L VT++
Sbjct: 140 WTSATRLLIVGGGLIGCEVATTARKL-----GLSVTIL 172
Score = 24.8 bits (55), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
VAI+G G+ G +TA L+ +++I D
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGD 35
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 30.1 bits (68), Expect = 0.066
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDG----AAGL---FE 76
M S ++ I+GAGI+G + A EL R N ++TV+ D+ + G A GL
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWN-NITVL-DQGPL-NMPGGSTSHAPGLVFQTN 57
Query: 77 PSPN 80
PS
Sbjct: 58 PSKT 61
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 30.1 bits (67), Expect = 0.066
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+N K ++GAG GL A+EL V ++
Sbjct: 91 TNTKCLVVGAGPCGLRAAVELALL--GARVVLV 121
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 30.1 bits (67), Expect = 0.069
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
KV ++A + G+ G + + RR + ++ AD
Sbjct: 16 FNPKKV-----RIAFIAVGLRGQTHVENMARR-DDVEIVAFAD 52
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 29.8 bits (68), Expect = 0.070
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
S V ++GA +G A +R P VT+I
Sbjct: 2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMI 34
Score = 27.9 bits (63), Expect = 0.37
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K I+G G IGL A+ L + D TV+
Sbjct: 161 KAVIVGGGFIGLEMAVSLADMW-GIDTTVV 189
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 30.1 bits (69), Expect = 0.070
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+ ++GA G + A +++R D+ +
Sbjct: 3 KIVVVGAVAGGATCASQIRRLDKESDIIIF 32
Score = 27.8 bits (63), Expect = 0.35
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KV ++GAG + L L R T+I
Sbjct: 150 KVLVVGAGYVSLEVLENLYER--GLHPTLI 177
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A*
2c7g_A*
Length = 456
Score = 30.2 bits (68), Expect = 0.071
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 28 HKVAILGAGIIGLSTALELQRRFP-----NCDVTVI 58
+ +AI+G+G A L + + V ++
Sbjct: 4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML 39
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 29.9 bits (68), Expect = 0.075
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 26 SNHKVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
++ + +G L+T L++ P+ +T + D+ + E +PN
Sbjct: 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDE--------KLQQVMEYNPN 58
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.9 bits (68), Expect = 0.077
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+ I+G G S A +R ++ +
Sbjct: 3 KILIIGGVAGGASAAARARRLSETAEIIMF 32
Score = 28.3 bits (64), Expect = 0.24
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++G G IGL L T++
Sbjct: 153 HATVVGGGFIGLEMMESLHHL--GIKTTLL 180
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 29.8 bits (68), Expect = 0.079
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KV ++G G + P+ DVT
Sbjct: 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAY 31
Score = 28.2 bits (64), Expect = 0.25
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I+G+G IG A + N +V +I
Sbjct: 151 TITIIGSGYIGAELAEAYSNQ--NYNVNLI 178
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate BIOS PSI-2, protein
structure initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 29.5 bits (67), Expect = 0.088
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
+ ++G G IG L + V+V++
Sbjct: 4 NILVIGTGAIGSFYGALLAKT--GHCVSVVS 32
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 0.093
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KV +LG+ G EL P+ ++
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWY 31
Score = 27.8 bits (63), Expect = 0.38
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++G+G IG+ A + VTVI
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKA--GKKVTVI 178
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.8 bits (68), Expect = 0.093
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
I+G G+S A+++ R N +V +
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTL 67
Score = 28.3 bits (64), Expect = 0.32
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G IGL A V +I
Sbjct: 188 DVTIIGGGAIGLEMAETFVEL--GKKVRMI 215
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 29.2 bits (66), Expect = 0.095
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ ++G+ G+ EL V +
Sbjct: 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAV 35
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding
domain, PSI-2, NYSGXRC, structur genomics, protein
structure initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 29.6 bits (67), Expect = 0.098
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
++ I+GAG +G L + V+A
Sbjct: 5 RICIVGAGAVGGYLGARLALA--GEAINVLA 33
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 29.4 bits (67), Expect = 0.098
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
K+ I+GA G+S A+ ++++P ++++I
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLI 33
Score = 28.6 bits (65), Expect = 0.23
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
VA++GAG IG+ L + V V
Sbjct: 149 TVAVIGAGPIGMEAIDFLVKM--KKTVHVF 176
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 29.4 bits (66), Expect = 0.10
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDV-TVIADKFNMDTTSDGAAGL 74
+ I+G G G A E + + +K ++ + A GL
Sbjct: 13 ADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGL 70
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 29.7 bits (66), Expect = 0.11
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++GAG GLS A E+ + PN V +I
Sbjct: 42 VVVVGAGSAGLSAAYEISKN-PNVQVAII 69
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.4 bits (67), Expect = 0.11
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
KV I+G G G+S A ++R P DV V
Sbjct: 5 KVVIIGGGAAGMSAASRVKRLKPEWDVKVF 34
Score = 28.2 bits (64), Expect = 0.32
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G IG+ A + +VT+I
Sbjct: 150 NVVIIGGGYIGIEMAEAFAAQ--GKNVTMI 177
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 29.4 bits (67), Expect = 0.11
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 20 NPKVMGSNHKVAILGAGIIGLSTALEL 46
P ++ KVA++G+G+IG +
Sbjct: 2 APALVQRRKKVAMIGSGMIGGTMGYLC 28
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 29.5 bits (67), Expect = 0.11
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
++AI+GAG +GL LQR DV +
Sbjct: 4 RIAIVGAGALGLYYGALLQRS--GEDVHFLL 32
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 29.5 bits (66), Expect = 0.11
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
VA+LG G +G+S A + V V A +
Sbjct: 157 NVAVLGLGRVGMSVARKFAAL--GAKVKVGARE 187
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 29.2 bits (66), Expect = 0.11
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++ ++G G I L + + +
Sbjct: 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWS 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.11
Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 31/99 (31%)
Query: 1 MFEVFSEFGVHSAAQSCPANPKVMG-SNHKVAILG--------AGIIGLSTALEL--QR- 48
FE G+ PA+ G S LG A ++ + + +E+ R
Sbjct: 1743 AFEDLKSKGL------IPADATFAGHS------LGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 49 RFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLE 87
V D G+ +P +
Sbjct: 1791 MTMQVAVPR-------DELGRSNYGMIAINPGRVAASFS 1822
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.1 bits (66), Expect = 0.12
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 29 KVAILGAGIIGL---STALELQRRFPNCDVTVI 58
++G G IGL + + +VT++
Sbjct: 154 NAVVIGGGYIGLEAAAVLTKF-----GVNVTLL 181
Score = 26.8 bits (60), Expect = 0.88
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
V I+GAG G A+ L++ V VI
Sbjct: 6 QAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGR 42
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 29.1 bits (66), Expect = 0.13
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
VAI+G G +G + A ELQ+ T+I
Sbjct: 4 SVAIIGPGAVGTTIAYELQQS--LPHTTLIG 32
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.0 bits (66), Expect = 0.14
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 24 MGSNHKVAILGAGIIGLSTALEL 46
M K+ ++G+G+IG A +
Sbjct: 1 MAPKAKIVLVGSGMIGGVMATLI 23
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.0 bits (66), Expect = 0.14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 24 MGSNHKVAILGAGIIGLSTA 43
M ++ KV ++G G +G S A
Sbjct: 2 MPNHQKVVLVGDGAVGSSYA 21
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.0 bits (64), Expect = 0.16
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
KV + G G + + R +V V+
Sbjct: 4 KVCVCGGGNGAHTLSGLAASR-DGVEVRVLT 33
>3b1f_A Putative prephenate dehydrogenase; enzyme,
4-hydroxyphenylpyruvate, oxidative decarboxylation
pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD;
2.10A {Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 29.1 bits (66), Expect = 0.16
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ I G G+IG S AL ++R P+ +
Sbjct: 8 TIYIAGLGLIGASLALGIKRDHPHYKIVGY 37
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 29.1 bits (66), Expect = 0.17
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 13 AAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
A Q+ + + V ++GAG GL L+ V VI
Sbjct: 2 AGQTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLREL--GRSVHVI 45
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 28.7 bits (65), Expect = 0.17
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G +G S A L+R +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGY 32
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 28.5 bits (64), Expect = 0.20
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 62
+AI+G G I L + N + A +
Sbjct: 27 NLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH 60
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 28.6 bits (65), Expect = 0.22
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V I+GAG G+ A+E +R V VI
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGKR--GRRVLVI 56
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 28.4 bits (64), Expect = 0.23
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G +G S A L+R +
Sbjct: 35 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGY 64
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 28.4 bits (64), Expect = 0.24
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 29 KVAILGAGIIGLSTALELQR----RFPNCDVTVIA 59
K+A+ G G +G L +V+ IA
Sbjct: 10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA 44
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 28.3 bits (64), Expect = 0.25
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++GAG G+ +L
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHEL-GLTTVGF 38
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 28.4 bits (64), Expect = 0.27
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+AI GAG +G + L + DVT+I
Sbjct: 5 KIAIAGAGAMGSRLGIMLHQG--GNDVTLID 33
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.2 bits (64), Expect = 0.28
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
M + I+GAG GL A +L + VTV
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKL--GKSVTVF 33
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 28.4 bits (64), Expect = 0.29
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
KVAI+GAG +G L R +V +IA
Sbjct: 21 KVAIMGAGAVGCYYGGMLARA--GHEVILIA 49
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.3 bits (64), Expect = 0.31
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++GAG+ G+ A + + V I
Sbjct: 11 DAVVIGAGVTGIYQAFLINQA--GMKVLGI 38
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 0.31
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+VA++GAG IG+ A QR+ +V +I
Sbjct: 196 RVAVVGAGYIGVELAEAFQRK--GKEVVLI 223
Score = 26.8 bits (60), Expect = 0.88
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFP-NCDVTVI 58
K+ ++GA G + + + ++ V
Sbjct: 37 KIVVVGANHAGTACIKTMLTNYGDANEIVVF 67
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 28.1 bits (63), Expect = 0.31
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
KV ++G G L + + + D
Sbjct: 7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACD 38
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 28.0 bits (62), Expect = 0.31
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 29 KVAILGAGIIGLSTA----LELQRRFPNCDVTV------IADKFNMDTTSDGAAGLFEPS 78
++AILGAG G++ ++ ++ ++N + G EP
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRT-GLDENGEPV 62
Query: 79 PNFMGPDLET 88
+ M L +
Sbjct: 63 HSSMYRYLWS 72
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A
Length = 317
Score = 27.8 bits (63), Expect = 0.33
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 24 MGSNHKVAILGAGIIGLSTALEL 46
M K+A++G+G IG + A +
Sbjct: 1 MIERRKIAVIGSGQIGGNIAYIV 23
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.1 bits (63), Expect = 0.35
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 1 MFEVFSEFGVHSAAQSCPANPKVMGSNH--------KVAILGAGIIGLSTALELQRRFPN 52
+ + ++ S + +V KV ++G G IG+ L +
Sbjct: 148 LAQPLAD-IEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYG-- 204
Query: 53 CDVTVIAD 60
+V +
Sbjct: 205 LEVWMANR 212
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 28.0 bits (63), Expect = 0.37
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
+ +A++G G +G + L R P ++ +A
Sbjct: 4 SNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVAS 40
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.0 bits (63), Expect = 0.37
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++ ++G G IG A L+ + + I+D
Sbjct: 4 RIGVIGLGRIGTIHAENLK-MIDDAILYAISD 34
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 27.7 bits (62), Expect = 0.39
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K+ ++G G I L + + +
Sbjct: 8 KMGMIGLGSIAQKAYLPILTKSERFEFVGAFT 39
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 27.9 bits (63), Expect = 0.39
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
G+H+ A N V I+GAG IGL
Sbjct: 149 GLHAFHL---AQGCE---NKNVIIIGAGTIGLLAIQ 178
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.0 bits (62), Expect = 0.41
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALELQR----RFPNCDVTVIADKFNMDTTSDGAAGL 74
A P ++ + + ++G G+ A E R P + ++ DK +++ + A GL
Sbjct: 14 AEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKI-LLVDKASLERSGAVAQGL 72
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.9 bits (61), Expect = 0.43
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 15 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 57
S + MG V +LG+G + L + +VTV
Sbjct: 13 SSGHIEGRHMGK--NVLLLGSGFVAQPVIDTLAAN-DDINVTV 52
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 27.7 bits (62), Expect = 0.43
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 12 SAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA 71
+ S V+ ++GAG GL A L + + F + + A
Sbjct: 3 KVSDSISTQYPVVDHEFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPTRSHTVAA 60
Query: 72 AGLFEPSPNFMGPD 85
G + M D
Sbjct: 61 QGGINAALGNMEDD 74
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 27.6 bits (62), Expect = 0.43
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
+ + A ++ V I GAG IGL T L
Sbjct: 168 ALAGLQR---AGVRL---GDPVLICGAGPIGLITML 197
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 27.7 bits (61), Expect = 0.44
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALELQR---RFPNCDVTVIADK 61
K S V I+GAG GL A L + P+ V +I DK
Sbjct: 3 KYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRII-DK 44
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 27.4 bits (61), Expect = 0.50
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTV----------IADKFNMDTTSDGAAGLFEPS 78
K+A++G G I L + ++P+ ++ + +A ++ + T + +
Sbjct: 4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYG 63
Query: 79 PN 80
+
Sbjct: 64 VD 65
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics,
NYSGXRC, LPS biosynthetic pathway, PSI, protein
structure initiative; 2.00A {Escherichia coli} SCOP:
c.87.1.7
Length = 348
Score = 27.3 bits (61), Expect = 0.57
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 29 KVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
K+ ++G +G +S +L LQ R+P + V+A L P
Sbjct: 2 KILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPA--------WCRPLLSRMPE 50
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 27.3 bits (61), Expect = 0.62
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
+ A + V ILG G IGL+
Sbjct: 200 AYN-AVIVRGGGIRP---GDNVVILGGGPIGLAAVA 231
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 27.2 bits (61), Expect = 0.62
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
+H S GS VAILG G+IGL T
Sbjct: 171 CLHGVDLSGI----KAGS--TVAILGGGVIGLLTVQ 200
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A
{Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Length = 326
Score = 27.2 bits (61), Expect = 0.63
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 13/57 (22%)
Query: 29 KVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
+V I+ +G + + Q+ P + ++ G A +
Sbjct: 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEE--------GFAQIPSWHAA 50
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 27.3 bits (61), Expect = 0.63
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K+ +G G L +V I D
Sbjct: 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFD 35
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 0.65
Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 7 EFGVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
G H N V I+GAG G A L V +
Sbjct: 375 RRGWHPEKFRQTKNKD------SVLIVGAGPSGSEAARVLMES--GYTVHLT 418
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 27.3 bits (61), Expect = 0.71
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
P + S+ +V ++GAG GL A L R DV +
Sbjct: 382 PERIRAKESDARVLVVGAGPSGLEAARALGVR--GYDVVLA 420
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 27.1 bits (59), Expect = 0.71
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQR 48
M + V +LG G+ + +
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSV 27
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 27.1 bits (60), Expect = 0.73
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN--CDVTVIA 59
+VA+LG G G++ A R F +V V A
Sbjct: 159 QVAVLGLGRTGMTIA----RTFAALGANVKVGA 187
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 26.9 bits (60), Expect = 0.76
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 19 ANPKVMGSNHKVAILGAGIIGLSTALEL 46
A + S +K+ ++G +G++ A+ +
Sbjct: 13 ATSQEPRSYNKITVVGCDAVGMADAISV 40
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 26.9 bits (59), Expect = 0.80
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 25 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
S ++ LG G + A +P TV+
Sbjct: 88 ASKLRITHLGGG--ACTMARYFADVYPQSRNTVV 119
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 26.8 bits (60), Expect = 0.80
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPD 85
++GAG G+ AL++ + +++ F + + A G + D
Sbjct: 8 FDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFPTRSHTVSAQGGITVALGNTHED 63
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 26.9 bits (60), Expect = 0.82
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 29 KVAILGAGIIGLSTA 43
V I+G+G++G S A
Sbjct: 8 DVLIVGSGLVGRSWA 22
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 26.7 bits (60), Expect = 0.85
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 18 PANPKVMGSNHKVAILGAGIIGLSTALELQR 48
V ++GAG GL+ A EL+
Sbjct: 113 KPRTPSRELGLSVGVIGAGPAGLAAAEELRA 143
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 26.7 bits (60), Expect = 0.88
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 21 PKVMGSNHKVAILGAGIIGLSTALEL 46
P M N K+A++G+G+IG + A
Sbjct: 2 PGSMARN-KIALIGSGMIGGTLAHLA 26
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 26.9 bits (60), Expect = 0.95
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K + G+ G P+ ++ I +
Sbjct: 7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVE 38
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.6 bits (59), Expect = 0.97
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+H + G I+ ++T L+L +R +VTVI
Sbjct: 4 DH-FIVCGHSILAINTILQLNQR--GQNVTVI 32
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 26.7 bits (58), Expect = 0.98
Identities = 6/33 (18%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
++ ++GAG +G + + R +V ++ +
Sbjct: 25 RIGLIGAGEMG-TDIVTQVARMQGIEVGALSAR 56
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 26.7 bits (60), Expect = 1.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 17 CPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
V+ K++I+GAG IG + AL L ++ + + D
Sbjct: 5 SYKYNTVIMRK-KISIIGAGQIGSTIALLLGQK--DLGDVYMFD 45
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 26.6 bits (59), Expect = 1.0
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 12 SAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRR 49
++ A V ++G+G G S A+
Sbjct: 111 DKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS 148
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 26.6 bits (59), Expect = 1.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
V ILG G+IG S +L + +V
Sbjct: 10 PVCILGLGLIGGSLLRDLHAA----NHSVFG 36
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 26.8 bits (58), Expect = 1.0
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 80
V +LG+G + T L VTV T + A L +
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTD--SGIKVTVA------CRTLESAKKLSAGVQH 48
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 26.9 bits (60), Expect = 1.0
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVT 56
K G K+ +LG G +G+ A+ V
Sbjct: 13 KERGPIKKIGVLGMGYVGIPAAVLFADAPCFEKVL 47
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 26.6 bits (59), Expect = 1.1
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
VA +G G A + +
Sbjct: 7 GVAAIGLGRWAYVMADAYT-KSEKLKLVTCYS 37
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 26.4 bits (59), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 KVAILGA-GIIGLSTALELQRRFPNCDVTVIAD 60
KVA+LGA G IG + AL L+ + P+ + D
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYD 34
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 24 MGSNH-KVAILGAGIIGLSTA 43
M + KVA++GAG +G S A
Sbjct: 1 MNKHVNKVALIGAGFVGSSYA 21
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 26.3 bits (59), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 24 MGSNHKVAILGAGIIGLSTA 43
+ S KVAI+GAG +G S A
Sbjct: 4 VKSRSKVAIIGAGFVGASAA 23
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 26.4 bits (59), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
K+ ++G G+IG S A +L+RR +I
Sbjct: 2 KIGVVGLGLIGASLAGDLRRR----GHYLIG 28
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 26.4 bits (59), Expect = 1.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
GVH+ + A ++ V ++GAG IGL + L
Sbjct: 157 GVHACRR---AGVQL---GTTVLVIGAGPIGLVSVL 186
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 26.3 bits (59), Expect = 1.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 29 KVAILGAGIIGLSTALEL 46
K+ ++GAG IG + A
Sbjct: 7 KITLVGAGNIGGTLAHLA 24
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 26.3 bits (59), Expect = 1.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 29 KVAILGAGIIGLSTALEL 46
KV ++GAG +G + A +
Sbjct: 2 KVTVIGAGNVGATVAECV 19
>3tl2_A Malate dehydrogenase; center for structural genomics of
infectious diseases, csgid dehydrogenase,
oxidoreductase, citric acid cycle; 1.70A {Bacillus
anthracis}
Length = 315
Score = 26.3 bits (59), Expect = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 24 MGSNH-KVAILGAGIIGLSTALEL 46
M KV+++GAG G +TA L
Sbjct: 4 MTIKRKKVSVIGAGFTGATTAFLL 27
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 26.1 bits (58), Expect = 1.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
KV ILG G+ G L ++ I
Sbjct: 7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMT 38
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A*
1uxj_A* 1uxi_A*
Length = 309
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 29 KVAILGAGIIGLSTALEL 46
K++I+GAG +G +TA L
Sbjct: 4 KISIIGAGFVGSTTAHWL 21
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 26.0 bits (58), Expect = 1.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
G+H+ + + HKV + GAG IG+ T L
Sbjct: 160 GIHACRR---GGVTL---GHKVLVCGAGPIGMVTLL 189
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 25.9 bits (58), Expect = 1.5
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 29 KVAILGAGII-GLSTALELQRRFPNCDVTV 57
V ++G G+ G L L RR N VT+
Sbjct: 160 HVVVIGRGVTVGRPLGLLLTRRSENATVTL 189
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 26.0 bits (58), Expect = 1.6
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 12 SAAQSCPANPKVMGSNH---KVAILGAGIIGLSTAL 44
+ + + MG K+ I G G +GLS +
Sbjct: 18 GSHMASMTGGQQMGRGSEFMKITISGTGYVGLSNGV 53
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 25.9 bits (58), Expect = 1.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 26 SNHKVAILGAGIIGLSTA 43
+ KV ++G G +G S A
Sbjct: 8 DHQKVILVGDGAVGSSYA 25
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 26.1 bits (58), Expect = 1.7
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V ++G G G + A + +I
Sbjct: 7 VLVVGGGPGGSTAARYAAKY--GLKTLMI 33
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 25.9 bits (58), Expect = 1.7
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 17 CPANPKVMGSNHKVAILGAGIIGLSTA 43
+ +K+ ++G G +G++ A
Sbjct: 9 VNLLKEEQVPQNKITVVGVGAVGMACA 35
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 26.0 bits (58), Expect = 1.8
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 29 KVAILGAGIIGLSTAL 44
V I GAG +GL
Sbjct: 170 SVLITGAGPLGLLGIA 185
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 25.9 bits (58), Expect = 1.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 29 KVAILGAGIIGLSTALEL 46
K+ ++GAG +G +TA L
Sbjct: 2 KITVIGAGNVGATTAFRL 19
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 26.1 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 34 GAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66
GAG +G + A Q P V V+ DKF +T
Sbjct: 18 GAGFVGSNLAFHFQENHPKAKVVVL-DKFRSNT 49
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 1.9
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 12 SAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRR 49
A A + V I+G+G GL+ A+ +
Sbjct: 111 DKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDA 148
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 25.8 bits (57), Expect = 2.0
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 24 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
M KV +LG G + L P ++ ++
Sbjct: 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSS 40
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 25.8 bits (57), Expect = 2.0
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 77
K+ I G G +GL A L + +VT + ++ +
Sbjct: 5 KILIAGCGDLGLELARRLTAQ--GHEVTGLR------RSAQPMPAGVQT 45
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 25.9 bits (58), Expect = 2.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 27 NHKVAILGAGIIGLSTA 43
+KV ++G G +G S A
Sbjct: 6 GNKVVLIGNGAVGSSYA 22
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 25.6 bits (57), Expect = 2.0
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTAL 44
VH+ S V I GAG IGL A+
Sbjct: 153 AVHTVYAGS------GVSGKSVLITGAGPIGLMAAM 182
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3,
oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 25.6 bits (57), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 22 KVMGSNHKVAILGAGIIGLSTALEL 46
K+ ++G G IGL T++
Sbjct: 6 HHHHHGSKLTVVGLGYIGLPTSIMF 30
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 25.7 bits (57), Expect = 2.1
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
K+ ++G+ L C +T IA
Sbjct: 4 KICVIGSSGHFRYALEGLD---EECSITGIAP 32
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 25.7 bits (57), Expect = 2.2
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPN-CDVTVIAD 60
++ I+G GI L + + ++T +
Sbjct: 20 RLGIVGCGIAARELHLPALKNLSHLFEITAVTS 52
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 25.8 bits (57), Expect = 2.2
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++G G+ GL A+ Q++ V+
Sbjct: 6 CDSLVIGGGLAGLRAAVATQQK--GLSTIVL 34
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 25.6 bits (57), Expect = 2.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 26 SNHKVAILGAGIIGLSTA 43
K+A++GAG +G + A
Sbjct: 6 KPTKLAVIGAGAVGSTLA 23
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 25.9 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVI 58
V I+G G G S A +L RR + ++
Sbjct: 9 VLIIGGGFAGSSAAYQLSRR--GLKILLV 35
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 25.5 bits (57), Expect = 2.4
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 29 KVAILGAGIIGLSTALEL 46
K+ +GAG +G ++A
Sbjct: 2 KLGFVGAGRVGSTSAFTC 19
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 25.2 bits (56), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 26 SNHK--VAILGAGIIGLSTALELQR 48
SN K V I GAG GL A L++
Sbjct: 1 SNAKKKVLIYGAGSAGLQLANMLRQ 25
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 25.2 bits (56), Expect = 2.4
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 33 LGAGIIGLSTALELQRRFPNCDVTVIAD 60
A I L + + +V V D
Sbjct: 50 YEALIRALEDLQMFGDKLVDMEVEVRMD 77
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 25.6 bits (57), Expect = 2.5
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAGLFEPSPNFMGPD 85
A++GAG GL+ +L L R + + + N T + S F+ D
Sbjct: 9 CAVIGAGPAGLNASLVLGRA--RKQIALFDNNTNRNRVTQN---------SHGFITRD 55
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 25.3 bits (55), Expect = 2.6
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 10 VHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQR 48
V S + + KV ILG+G S A L
Sbjct: 15 VDSDSSLAKVPDEAP----KVGILGSGDFARSLATRLVG 49
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 25.7 bits (56), Expect = 2.8
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 30 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 64
V ++GAG GL+ A E R V ++ ++
Sbjct: 131 VLVVGAGPAGLAAAREASRS--GARVMLLDERAEA 163
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 25.1 bits (56), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 SNHKVAILGAGIIGLSTALEL 46
+V ++GAG +G S L
Sbjct: 5 GGARVVVIGAGFVGASYVFAL 25
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 25.2 bits (56), Expect = 3.0
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 26 SNHKVAILGAGIIGLSTALEL 46
+ +K+ ++G G +G++ L +
Sbjct: 13 TVNKITVVGGGELGIACTLAI 33
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 25.4 bits (56), Expect = 3.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 59
+V ++G I AL P +VT IA
Sbjct: 29 RVGVIGCADIAWRRALPALEAEPLTEVTAIA 59
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3
turn-helix, hydrophobic wedge, 3' FLA site,
hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus}
SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Length = 336
Score = 25.2 bits (55), Expect = 3.2
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 38 IGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF-------EPSPNFMGPDLE 87
+G+ AL + + + + A K N+D + F + F PD E
Sbjct: 243 VGVKKALNYIKTYGDIFRALKALKVNIDHVEE-IRNFFLNPPVTDDYRIEFREPDFE 298
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 25.2 bits (55), Expect = 3.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 24 MGSNHK--VAILGAGIIGLSTALELQRRFPNCDVTVIADK 61
M + K AI+G G IG L+ P+ ++ I +
Sbjct: 4 MTDDKKIRAAIVGYGNIGRYALQALREA-PDFEIAGIVRR 42
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 25.1 bits (55), Expect = 3.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 30 VAILGAGIIGLSTALELQR 48
V I+GAG GLS A L++
Sbjct: 38 VVIVGAGPAGLSAATRLKQ 56
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II,
target 11223F, structural genomics, prote structure
initiative; 2.00A {Clostridium difficile}
Length = 169
Score = 24.9 bits (55), Expect = 3.4
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 44 LELQRRFPNCDVTVIADKFNMDTTS 68
L+ R ++ V + ++T +
Sbjct: 95 LKYVRMLKERNIAVYFEDEKINTLT 119
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 25.2 bits (56), Expect = 3.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 29 KVAILGAGIIGLSTA 43
K+ I+G G +G STA
Sbjct: 2 KIGIVGLGRVGSSTA 16
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 25.2 bits (56), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 24 MGSNHK---VAILGAGIIGLSTALELQRR 49
M + K + I+G G +GL TA R
Sbjct: 1 MREDTKVYDITIIGGGPVGLFTAFYGGMR 29
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A*
3c3e_A* 3cgw_A
Length = 311
Score = 24.9 bits (54), Expect = 3.6
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 30 VAILGAGIIGLSTALE-LQRRFPNCDVTVIADKFNMDTTSD--GAAGLFEPSPNFMGPDL 86
+ I G G L+ L+ P ++TV+ T++ +G PDL
Sbjct: 1 MIIFSGGT-GTPKLLDGLKEILPEEELTVVV------NTAEDLWVSGNLIS------PDL 47
Query: 87 ET 88
+T
Sbjct: 48 DT 49
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 25.2 bits (55), Expect = 3.6
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 24 MGSNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIA 59
MGS ++ ++GA G IG A ++
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDL--GHPTFLLV 35
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 25.2 bits (56), Expect = 3.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 28 HKVAILGAGIIGLSTALELQR 48
V I+G GLS AL+L R
Sbjct: 3 FDVIIIGGSYAGLSAALQLGR 23
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 25.1 bits (54), Expect = 4.4
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
VA+ G G IG A + ++ P+ + +A
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAK 33
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 24.9 bits (55), Expect = 4.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 9 GVHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTA 43
H+ + + G V I GAG +GL
Sbjct: 183 AYHAFDEYPESFA---GKT--VVIQGAGPLGLFGV 212
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL
biogenesis/degradation, cell shape, benzyl purine, MURI
inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis}
PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Length = 290
Score = 24.9 bits (55), Expect = 4.7
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
H + M + + ++ +G+ GL+ E ++ PN + + D
Sbjct: 8 HHHSSGLVPRGSHMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGD 57
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 24.7 bits (54), Expect = 4.9
Identities = 2/32 (6%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
+ A +G + + ++ + +
Sbjct: 6 RFAAIGLAHNHIYDMCQQLID-AGAELAGVFE 36
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 24.8 bits (55), Expect = 4.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 29 KVAILGAGIIGLSTA 43
KV I+G+G++G +TA
Sbjct: 2 KVGIVGSGMVGSATA 16
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional
regulation, redox poise; HET: ATP; 2.0A {Bacillus
subtilis} PDB: 2vt2_A*
Length = 215
Score = 24.5 bits (53), Expect = 5.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 26 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
V ++G G +G + + N +++ D
Sbjct: 84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFD 118
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 24.5 bits (54), Expect = 5.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 30 VAILGAGIIGLSTALELQRR 49
V I+GAG GL + R
Sbjct: 8 VLIVGAGPTGLFAGFYVGMR 27
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 24.5 bits (52), Expect = 7.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 20 NPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
N G ++ V ILG G+ + L + V+
Sbjct: 13 NLYFQGEHYDVIILGTGLKECILSGLLSHY--GKKILVL 49
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 24.1 bits (52), Expect = 7.2
Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 2/29 (6%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVT 56
+ G G + L + +
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQ--GWRII 32
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle,
glyoxysome, NAD, glyoxylate bypass, oxidoreductase;
HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 24.1 bits (53), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 26 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIAD 60
KVAILGA G IG A+ ++ P V + D
Sbjct: 7 PGFKVAILGAAGGIGQPLAMLMKMN-PLVSVLHLYD 41
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
replication, RTH, RAD27, DNA repair; 2.00A
{Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2
PDB: 1a77_A
Length = 326
Score = 24.0 bits (52), Expect = 7.5
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 33 LGAGI--IGLSTALELQRRFPNCD 54
G+ IG A EL R D
Sbjct: 226 NPGGVKGIGFKRAYELVRSGVAKD 249
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 24.1 bits (52), Expect = 7.6
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 24 MGSNHKVAILGA-GIIGLSTALELQRR 49
M +V I+G G IG
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISL 27
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 24.0 bits (53), Expect = 7.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 29 KVAILGAGIIGLSTA 43
KV ++G G +G + A
Sbjct: 2 KVGVVGTGFVGSTAA 16
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 24.0 bits (53), Expect = 7.6
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
++ V ++G G GL A+ +V ++
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEE--GANVLLL 55
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 24.1 bits (53), Expect = 7.7
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 29 KVAILGAGIIGL 40
K+ I+G+G I +
Sbjct: 178 KIGIVGSGYIAV 189
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 24.3 bits (53), Expect = 8.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 30 VAILGAGIIGLSTALE 45
V ++GAG G + +L
Sbjct: 124 VLVVGAGSAGFNASLA 139
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 24.3 bits (53), Expect = 8.2
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++ I+G G +G S + L N +V + D
Sbjct: 7 QLVIVGYGGMG-SYHVTLASAADNLEVHGVFD 37
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 24.2 bits (53), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 30 VAILGAGIIGLSTAL 44
V + GAG +GL+ A
Sbjct: 189 VYVAGAGPVGLAAAA 203
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 23.8 bits (52), Expect = 8.6
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 29 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 60
++A++GAG G + + P + +A
Sbjct: 12 RLALIGAGRWGKNYIRTIA-GLPGAALVRLAS 42
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 24.3 bits (52), Expect = 8.6
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 11 HSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 66
H ++ P M ++ LG I GL + +++ +++ ++
Sbjct: 9 HHSSGLVPR-GSHMAASTVAGELGLSITGLGVQYP-PYSLGPDAIDILSKRYHPES 62
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 24.0 bits (53), Expect = 8.6
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 28 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAGLFE--PS-PNFM 82
+ V I+G+G G + A+ R+ ++ ++F + T D E S P
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARK--GIRTGLMGERFGGQILDTVD-----IENYISVPKTE 54
Query: 83 GPDL 86
G L
Sbjct: 55 GQKL 58
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomi europe, spine,
hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB:
2obc_A* 2o7p_A*
Length = 402
Score = 24.1 bits (53), Expect = 8.8
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 21 PKVMGSNHKVAILGAGIIGLSTALELQRR 49
PK++GS+ + G+ L+ A + + +
Sbjct: 350 PKLLGSDARGLCTLPGLEKLADAPQFKFK 378
>3dfu_A Uncharacterized protein from 6-phosphogluconate
dehydrogenase-like family; putative rossmann-like
dehydrogenase, structural genomics; HET: MSE; 2.07A
{Corynebacterium glutamicum}
Length = 232
Score = 23.8 bits (51), Expect = 8.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 29 KVAILGAGIIGLSTALELQRR 49
+V I G ++ A +L
Sbjct: 8 RVGIFDDGSSTVNMAEKLDSV 28
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 23.8 bits (52), Expect = 9.0
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 27 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 58
+ V + G G +G A L+ ++++
Sbjct: 22 HKIVIVGGYGKLGGLFARYLRAS--GYPISIL 51
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 24.0 bits (51), Expect = 9.1
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 10 VHSAAQSCPANPKVMGSNHKVAILGAGIIGLSTALELQR 48
+H + M ++ I G G +G + +
Sbjct: 6 IHHHHHHENLYFQGM----EITIFGKGNMGQAIGHNFEI 40
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 24.0 bits (51), Expect = 9.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 29 KVAILGAGIIGLSTALELQR 48
+ ++GAG + + A L R
Sbjct: 12 PIVLIGAGNLATNLAKALYR 31
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 23.9 bits (52), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 34 GAGIIGLSTALELQRRFPNCDVTVIA 59
G+G+ G S L + R+ DV V+
Sbjct: 165 GSGV-GKSVLLGMMARYTRADVIVVG 189
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 23.8 bits (52), Expect = 9.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 30 VAILGAGIIGLSTALELQRR 49
+ I+G G G+ A +
Sbjct: 17 LTIIGGGPTGIFAAFQCGMN 36
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 23.8 bits (52), Expect = 9.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 30 VAILGAGIIGLSTALE 45
V + G GI G++ ++E
Sbjct: 44 VVVAGYGIAGVAASIE 59
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 24.1 bits (53), Expect = 9.6
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 29 KVAILGAGIIGLSTALELQ---RRFPNCDVTVI 58
VA+ G G+IG LEL R V V
Sbjct: 176 SVAVFGPGVIG----LELGQALSRL-GVIVKVF 203
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 24.0 bits (51), Expect = 9.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 30 VAILGAGIIGLSTALEL 46
V I+G+G IG + A EL
Sbjct: 49 VVIVGSGPIGCTYAREL 65
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 23.7 bits (52), Expect = 9.9
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 30 VAILGAGIIGLSTAL 44
V ++G G +GL +
Sbjct: 170 VCVIGIGPVGLMSVA 184
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 23.9 bits (51), Expect = 10.0
Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 29 KVAILGAGIIGLSTAL 44
K+A+LG G +G +
Sbjct: 21 KIAVLGTGTVG--RTM 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,358,202
Number of extensions: 70806
Number of successful extensions: 626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 353
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)