BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17040
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum
GN=abcG20 PE=3 SV=1
Length = 730
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 28/281 (9%)
Query: 53 VMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN 112
V+ F P +QV+L+ LAIG P L +VN ++ P+ S Y+N
Sbjct: 365 VLSFELLSPSVQVLLYFLAIGGSPKNLEFGVVNLDVG------PIGS---------MYIN 409
Query: 113 SLPNDTIIKDY-YPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
SL N I + Y AI ++ G+++G L F++A++ + +
Sbjct: 410 SLSNTGIFNFHNYNSTTEAIEQIKSGNSFGLLDINAQFSEAILENFMNLSQYNP----NG 465
Query: 172 EIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGSNDP 230
+I +++D +N QI L++ + L LS+ A+ Q I PI+ P +YG+ +
Sbjct: 466 QIDLYMDFTNYQITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGNPNS 518
Query: 231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVV 290
F DF+APG++ I F A+++TS + + E+++G LDR + GV I+F H + +
Sbjct: 519 KFIDFLAPGMVCLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGHLPL 578
Query: 291 MCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
+ Q ++L+ I+ F V +G++ LV ++T+ GM
Sbjct: 579 LLVQITVLLLIAIYGFNVPIEGNIALVFLMTVSLAFVGMSL 619
>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum
GN=abcG23 PE=3 SV=2
Length = 701
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 29/279 (10%)
Query: 54 MLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNS 113
++F P + + LF LAIG P L I N +D + LS ++N+
Sbjct: 337 LVFEIISPSLLITLFFLAIGNVPHDLKFGIKN--IDSGS-------------LSGDFINA 381
Query: 114 LPNDTIIKDYYP--DPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
L + I ++ D +AI + D WG + NFT+ ++ ++ + E++ + S
Sbjct: 382 LSDGNNIFNFIQINDTSNAIQMIESSDLWGLIDIPVNFTNGMINKLF---NPLEKSFENS 438
Query: 172 EIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPS 231
E+ +++D+SN Q+ LM++ Q ++ A D I +P F +YG + +
Sbjct: 439 EMEIYMDLSNFQMNLMVDVQFQKAFNKIAND--------SGIKLLPTNF-HAVYGDQNAN 489
Query: 232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM 291
F F+AP +I I + + S + E+ +G DR + GV+P+ + H++ ++
Sbjct: 490 FNWFLAPAMICIITYVHCMNFLSITFVREKNDGTRDRILLYGVSPVSNVLGHILAHIPIL 549
Query: 292 CGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMC 330
Q ++ L+ +F FGV KG+++L+ + IL GMC
Sbjct: 550 LVQFSIQLLIAVFAFGVPIKGNIVLIYLFFILINTVGMC 588
>sp|P0AFQ1|YBHR_SHIFL Inner membrane transport permease YbhR OS=Shigella flexneri GN=ybhR
PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 166 ETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY 225
+T + +++ LD N + LQ +++ Q+LL + PK + + + +
Sbjct: 110 DTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELL---EGKPKPNNSELVVRN--W 164
Query: 226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
+ + + FV P +I I + +TS ++ ER +G LD+ V+ +T +I +
Sbjct: 165 YNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAV 224
Query: 286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
+V Q +VL I+ + + G L L ++ GL + F
Sbjct: 225 PALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGF 270
>sp|P0AFP9|YBHR_ECOLI Inner membrane transport permease YbhR OS=Escherichia coli (strain
K12) GN=ybhR PE=1 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 166 ETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY 225
+T + +++ LD N + LQ +++ Q+LL + PK + + + +
Sbjct: 110 DTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELL---EGKPKPNNSELVVRN--W 164
Query: 226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
+ + + FV P +I I + +TS ++ ER +G LD+ V+ +T +I +
Sbjct: 165 YNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAV 224
Query: 286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
+V Q +VL I+ + + G L L ++ GL + F
Sbjct: 225 PALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGF 270
>sp|P0AFQ0|YBHR_ECO57 Inner membrane transport permease YbhR OS=Escherichia coli O157:H7
GN=ybhR PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 166 ETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY 225
+T + +++ LD N + LQ +++ Q+LL + PK + + + +
Sbjct: 110 DTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELL---EGKPKPNNSELVVRN--W 164
Query: 226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
+ + + FV P +I I + +TS ++ ER +G LD+ V+ +T +I +
Sbjct: 165 YNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAV 224
Query: 286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
+V Q +VL I+ + + G L L ++ GL + F
Sbjct: 225 PALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGF 270
>sp|P0AGH2|YHHJ_SHIFL Inner membrane transport permease YhhJ OS=Shigella flexneri GN=yhhJ
PE=3 SV=3
Length = 374
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 241 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 300
I+ + LA+ LT SALI ER G ++ V +TP EI+ + + + +V+ + L L+
Sbjct: 182 IINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSLV 241
Query: 301 FMI-FVFGVECKGDLLLVII 319
M+ V GV +G + L ++
Sbjct: 242 LMVKGVLGVPIEGSIPLFML 261
>sp|P0AGH1|YHHJ_ECOLI Inner membrane transport permease YhhJ OS=Escherichia coli (strain
K12) GN=yhhJ PE=1 SV=3
Length = 374
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 241 ILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLI 300
I+ + LA+ LT SALI ER G ++ V +TP EI+ + + + +V+ + L L+
Sbjct: 182 IINNITMLAIVLTGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSLV 241
Query: 301 FMI-FVFGVECKGDLLLVII 319
M+ V GV +G + L ++
Sbjct: 242 LMVKGVLGVPIEGSIPLFML 261
>sp|P0DJO9|PRMA_LISMO Ribosomal protein L11 methyltransferase OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=prmA PE=3
SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTNVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL ++ LIIE+ME D WVA
Sbjct: 250 LAEVILLFPEDVYKALKPGGV-FIASGIIEDKAKVVEEALKNAGLIIEKMEQQGD--WVA 306
>sp|G2K044|PRMA_LISM4 Ribosomal protein L11 methyltransferase OS=Listeria monocytogenes
serotype 1/2a (strain 10403S) GN=prmA PE=3 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTNVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL ++ LIIE+ME D WVA
Sbjct: 250 LAEVILLFPEDVYKALKPGGV-FIASGIIEDKAKVVEEALKNAGLIIEKMEQQGD--WVA 306
>sp|A0AIS2|PRMA_LISW6 Ribosomal protein L11 methyltransferase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=prmA PE=3 SV=1
Length = 314
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 104 THLSCRYLNSL--PNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGR 161
T L R L+ PND II VG G L + L A+ VL
Sbjct: 161 TQLCIRALSDYLQPNDEIID--------------VGTGSGVLSIA---SAKLGAKSVLAT 203
Query: 162 DADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFK 221
D DE +E + L+ + I + N LQ + +++ +A++ + F
Sbjct: 204 DLDEIATRAAEENIILNKTEHIITVKQNNLLQDINKTNVDIVVANI-----LAEVILLFP 258
Query: 222 EPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
E +Y + P F+A G+I + AL ++ L+IE++E D WVA
Sbjct: 259 EDVYRALKPGGI-FIASGIIEDKAKVVEEALKNAGLVIEKIEQQGD--WVA 306
>sp|Q71ZJ9|PRMA_LISMF Ribosomal protein L11 methyltransferase OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=prmA PE=3 SV=1
Length = 314
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTDVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL + L+IE+ME D WVA
Sbjct: 250 LAEVILLFPEDVYKALKPGGI-FIASGIIEDKAKVVEEALKKAGLVIEKMEQQGD--WVA 306
>sp|C1KVB8|PRMA_LISMC Ribosomal protein L11 methyltransferase OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=prmA PE=3 SV=1
Length = 314
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTDVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL + L+IE+ME D WVA
Sbjct: 250 LAEVILLFPEDVYRALKPGGI-FIASGIIEDKAKVVEEALKKAGLVIEKMEQQGD--WVA 306
>sp|Q92BP0|PRMA_LISIN Ribosomal protein L11 methyltransferase OS=Listeria innocua serovar
6a (strain CLIP 11262) GN=prmA PE=3 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENIRLNKTENIITVKQNNLLQDINKSDVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL ++ LIIE++E D WVA
Sbjct: 250 LAEVILLFPEDVYKALKPGGI-FIASGIIEDKAKVVEEALKNAGLIIEKIEQQGD--WVA 306
>sp|B8DE40|PRMA_LISMH Ribosomal protein L11 methyltransferase OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=prmA PE=3 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
L A+ +L D DE +E + L+ + I + N LQ + +++
Sbjct: 195 LGAKSILATDLDEIATRAAEENITLNKTEHIITVKQNNLLQDINKTNVDIVVANI----- 249
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVA 272
+A++ + F E +Y + P F+A G+I + AL ++ LIIE++E D WVA
Sbjct: 250 LAEVILLFPEDVYRALKPGGI-FIASGIIEDKAKVVEEALKNAGLIIEKIEQQGD--WVA 306
>sp|Q7V511|PSAB_PROMM Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus
marinus (strain MIT 9313) GN=psaB PE=3 SV=1
Length = 749
Score = 32.0 bits (71), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 220 FKEPI--YGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAG--VT 275
F+E I YG N TD + + + LA T+++L+ M L +++A T
Sbjct: 321 FREKIGHYGLNHNGITDTINNSLHFQLGLALACLGTAASLVAHHMGALPSYAFIAQDYTT 380
Query: 276 PLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGL 326
+ H +MCG + IF + + E D +L +L + L
Sbjct: 381 QAALYTHHQYIAIFLMCGAFSHGAIFFVRDYDPEANKDNVLARVLETKEAL 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.142 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,363,522
Number of Sequences: 539616
Number of extensions: 4947802
Number of successful extensions: 14279
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 14267
Number of HSP's gapped (non-prelim): 24
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)