Query psy17040
Match_columns 354
No_of_seqs 141 out of 1621
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:16:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12698 ABC2_membrane_3: ABC- 99.9 1.5E-25 3.2E-30 211.7 3.2 266 51-349 1-273 (344)
2 COG1668 NatB ABC-type Na+ effl 99.8 2.8E-19 6.1E-24 174.1 24.9 283 33-350 2-316 (407)
3 TIGR03061 pip_yhgE_Nterm YhgE/ 99.8 1.3E-18 2.7E-23 149.3 16.6 149 41-204 1-156 (164)
4 TIGR01291 nodJ ABC-2 type tran 99.3 7.5E-11 1.6E-15 108.2 15.5 118 230-348 54-172 (253)
5 PF12051 DUF3533: Protein of u 99.2 6.7E-09 1.4E-13 100.9 26.7 219 75-310 26-274 (382)
6 TIGR00025 Mtu_efflux ABC trans 99.2 2.4E-10 5.2E-15 103.5 14.7 113 232-345 34-146 (232)
7 COG1511 Predicted membrane pro 99.2 4.3E-10 9.3E-15 118.3 14.8 111 37-155 2-118 (780)
8 TIGR01248 drrC daunorubicin re 99.2 5.9E-10 1.3E-14 94.3 12.6 94 250-344 5-101 (152)
9 TIGR03518 ABC_perm_GldF glidin 99.1 1.2E-09 2.6E-14 99.5 15.1 103 248-350 64-172 (240)
10 COG0842 ABC-type multidrug tra 99.1 3.7E-08 8E-13 90.5 22.6 122 228-349 82-204 (286)
11 TIGR01247 drrB daunorubicin re 99.1 3.6E-09 7.7E-14 95.9 15.4 118 230-349 44-161 (236)
12 PF12679 ABC2_membrane_2: ABC- 99.1 2.9E-09 6.2E-14 98.4 14.6 102 249-351 82-194 (277)
13 TIGR03861 phenyl_ABC_PedC alco 99.1 4.5E-09 9.7E-14 96.4 15.7 116 231-348 57-173 (253)
14 TIGR03062 pip_yhgE_Cterm YhgE/ 99.0 3.6E-09 7.8E-14 94.0 13.5 126 215-348 5-130 (208)
15 PRK15066 inner membrane transp 99.0 1.2E-08 2.6E-13 93.8 15.7 119 230-349 57-175 (257)
16 PF03379 CcmB: CcmB protein; 98.3 1.6E-05 3.4E-10 71.1 14.2 108 232-340 43-150 (215)
17 COG1277 NosY ABC-type transpor 98.2 1.2E-05 2.5E-10 74.6 11.7 105 248-352 74-185 (278)
18 TIGR01190 ccmB heme exporter p 98.2 4.5E-05 9.8E-10 67.6 14.0 111 230-341 38-148 (211)
19 PF01061 ABC2_membrane: ABC-2 97.8 9.5E-07 2E-11 77.6 -4.5 94 256-350 72-166 (210)
20 PF12730 ABC2_membrane_4: ABC- 97.7 0.0013 2.9E-08 57.6 15.1 100 250-350 63-171 (232)
21 COG2386 CcmB ABC-type transpor 97.5 0.0025 5.3E-08 55.6 12.6 113 228-341 42-154 (221)
22 TIGR01257 rim_protein retinal- 97.2 0.0043 9.4E-08 71.6 13.9 117 233-351 651-767 (2272)
23 TIGR03733 lanti_perm_MutG lant 97.0 0.041 8.9E-07 50.2 15.6 92 250-341 61-158 (248)
24 TIGR01257 rim_protein retinal- 96.8 0.39 8.3E-06 56.3 24.0 91 256-347 1700-1793(2272)
25 PLN03211 ABC transporter G-25; 96.7 0.02 4.4E-07 59.7 12.4 90 262-351 464-555 (659)
26 TIGR00955 3a01204 The Eye Pigm 96.5 0.038 8.2E-07 57.3 13.1 89 262-350 418-508 (617)
27 COG4200 Uncharacterized protei 96.2 0.11 2.4E-06 46.1 12.2 100 253-352 71-176 (239)
28 PLN03140 ABC transporter G fam 95.8 0.15 3.4E-06 57.8 14.1 89 264-352 1275-1365(1470)
29 PF13346 ABC2_membrane_5: ABC- 95.5 0.54 1.2E-05 40.9 13.9 48 255-302 54-101 (206)
30 TIGR00956 3a01205 Pleiotropic 95.5 0.15 3.3E-06 57.7 12.6 90 262-351 478-569 (1394)
31 KOG0059|consensus 95.2 3.5 7.6E-05 44.8 21.4 97 252-349 314-410 (885)
32 PLN03140 ABC transporter G fam 95.2 0.38 8.2E-06 54.8 14.5 79 274-352 608-687 (1470)
33 KOG0061|consensus 94.4 0.78 1.7E-05 47.6 13.4 76 275-350 429-505 (613)
34 TIGR00956 3a01205 Pleiotropic 94.2 0.43 9.2E-06 54.3 11.8 77 275-351 1169-1253(1394)
35 TIGR03732 lanti_perm_MutE lant 94.1 0.7 1.5E-05 42.0 11.2 48 252-299 58-105 (241)
36 TIGR00439 ftsX putative protei 93.8 6 0.00013 37.4 23.1 92 30-136 8-111 (309)
37 COG1682 TagG ABC-type polysacc 93.8 2.5 5.4E-05 39.0 14.1 111 229-345 65-178 (263)
38 TIGR03861 phenyl_ABC_PedC alco 92.9 0.17 3.7E-06 46.1 5.0 40 34-74 3-42 (253)
39 PRK11026 ftsX cell division AB 92.8 8.9 0.00019 36.2 24.0 91 31-136 9-111 (309)
40 PF01061 ABC2_membrane: ABC-2 90.6 0.43 9.4E-06 41.3 4.8 40 34-74 2-42 (210)
41 PF06182 ABC2_membrane_6: ABC- 89.7 9 0.0002 34.2 12.8 84 255-338 52-137 (229)
42 KOG0065|consensus 87.7 9.5 0.00021 42.6 13.1 79 273-351 529-608 (1391)
43 TIGR01291 nodJ ABC-2 type tran 86.8 0.93 2E-05 41.4 4.5 38 36-74 8-46 (253)
44 COG3559 TnrB3 Putative exporte 85.6 23 0.00049 34.9 13.0 61 258-318 372-435 (536)
45 KOG0065|consensus 85.5 3.5 7.6E-05 45.8 8.5 79 275-353 1195-1274(1391)
46 TIGR01247 drrB daunorubicin re 83.4 1 2.2E-05 40.4 3.0 33 41-74 1-33 (236)
47 COG2386 CcmB ABC-type transpor 83.3 1.3 2.8E-05 39.0 3.4 45 32-77 1-45 (221)
48 PF09847 DUF2074: Predicted pe 80.6 44 0.00095 33.4 13.5 46 262-307 317-362 (449)
49 PF03379 CcmB: CcmB protein; 78.4 2.7 5.9E-05 37.4 3.9 40 35-75 1-40 (215)
50 PRK15176 Vi polysaccharide exp 77.1 8.8 0.00019 35.3 7.0 53 22-74 8-60 (264)
51 PRK07377 hypothetical protein; 75.9 18 0.00039 31.2 7.9 36 113-148 102-139 (184)
52 COG1682 TagG ABC-type polysacc 74.6 8.6 0.00019 35.4 6.2 48 27-74 12-59 (263)
53 COG1511 Predicted membrane pro 70.7 18 0.0004 38.7 8.4 122 216-347 566-687 (780)
54 TIGR01654 bact_immun_7tm bacte 61.8 91 0.002 32.9 11.5 13 77-89 35-47 (679)
55 PF12911 OppC_N: N-terminal TM 59.3 22 0.00048 23.9 4.4 27 40-67 6-32 (56)
56 PRK15066 inner membrane transp 56.3 20 0.00043 32.6 4.8 40 32-72 7-47 (257)
57 TIGR03518 ABC_perm_GldF glidin 52.4 25 0.00053 31.8 4.7 29 36-65 2-30 (240)
58 PRK05583 ribosomal protein L7A 51.4 74 0.0016 24.8 6.7 67 77-157 32-98 (104)
59 PF00497 SBP_bac_3: Bacterial 48.4 62 0.0013 27.6 6.6 34 121-154 135-168 (225)
60 TIGR01190 ccmB heme exporter p 47.1 19 0.00041 32.0 3.0 37 39-76 2-38 (211)
61 PRK15176 Vi polysaccharide exp 45.0 2.5E+02 0.0054 25.7 13.3 27 321-347 155-184 (264)
62 TIGR00955 3a01204 The Eye Pigm 40.4 66 0.0014 33.5 6.3 46 28-74 336-381 (617)
63 PF00072 Response_reg: Respons 40.1 26 0.00056 26.5 2.5 36 109-144 13-49 (112)
64 PF02142 MGS: MGS-like domain 37.7 49 0.0011 25.0 3.7 25 129-153 51-75 (95)
65 PRK07714 hypothetical protein; 37.6 1.3E+02 0.0028 23.1 6.1 65 77-155 33-97 (100)
66 TIGR01096 3A0103s03R lysine-ar 36.5 79 0.0017 27.9 5.5 25 121-145 156-180 (250)
67 PRK13743 conjugal transfer pro 35.8 2.4E+02 0.0052 22.9 7.3 60 276-339 36-106 (141)
68 COG0690 SecE Preprotein transl 35.3 1.6E+02 0.0036 21.3 5.9 44 27-70 15-58 (73)
69 TIGR02122 TRAP_TAXI TRAP trans 34.8 1.2E+02 0.0027 27.9 6.7 59 75-146 28-90 (320)
70 PF10766 DUF2592: Protein of u 34.5 72 0.0016 20.1 3.2 22 52-73 4-25 (41)
71 PRK01189 V-type ATP synthase s 32.3 2.4E+02 0.0051 22.0 6.8 31 123-154 27-60 (104)
72 PF09323 DUF1980: Domain of un 30.9 1.1E+02 0.0024 26.3 5.2 19 50-68 72-90 (182)
73 COG0745 OmpR Response regulato 30.6 52 0.0011 29.5 3.2 48 80-144 2-49 (229)
74 TIGR00025 Mtu_efflux ABC trans 30.4 55 0.0012 29.0 3.4 28 47-74 1-28 (232)
75 TIGR02527 dot_icm_IcmQ Dot/Icm 30.2 1.3E+02 0.0029 25.6 5.2 60 76-148 63-127 (182)
76 PRK15010 ABC transporter lysin 30.2 1.1E+02 0.0024 27.4 5.4 32 113-144 151-182 (260)
77 TIGR00400 mgtE Mg2+ transporte 30.0 5.5E+02 0.012 25.5 10.7 30 278-307 353-382 (449)
78 PRK07283 hypothetical protein; 29.6 1.7E+02 0.0037 22.4 5.5 63 77-154 33-95 (98)
79 COG3559 TnrB3 Putative exporte 29.4 5.9E+02 0.013 25.5 12.7 84 260-345 109-196 (536)
80 TIGR02995 ectoine_ehuB ectoine 28.7 1.1E+02 0.0023 27.9 5.0 28 121-148 169-196 (275)
81 TIGR01006 polys_exp_MPA1 polys 28.5 4.1E+02 0.0089 23.4 11.8 19 171-189 119-137 (226)
82 PRK15437 histidine ABC transpo 27.9 1.3E+02 0.0027 27.1 5.3 24 121-144 159-182 (259)
83 PF09847 DUF2074: Predicted pe 27.8 6.2E+02 0.014 25.2 12.7 25 261-285 56-81 (449)
84 PRK10714 undecaprenyl phosphat 27.1 4.5E+02 0.0097 24.7 9.1 20 129-148 81-100 (325)
85 PF07854 DUF1646: Protein of u 26.9 1.9E+02 0.004 27.6 6.1 51 254-310 36-86 (347)
86 PRK11063 metQ DL-methionine tr 26.6 1.1E+02 0.0024 28.1 4.8 60 77-151 31-93 (271)
87 PF12730 ABC2_membrane_4: ABC- 26.6 64 0.0014 27.4 3.0 26 40-67 1-26 (232)
88 smart00448 REC cheY-homologous 25.5 1.4E+02 0.003 17.2 3.8 36 109-144 15-50 (55)
89 PRK11917 bifunctional adhesin/ 25.1 1.4E+02 0.0031 26.9 5.2 24 121-144 176-199 (259)
90 PF10835 DUF2573: Protein of u 23.1 48 0.001 24.4 1.2 22 9-30 46-67 (82)
91 COG4961 TadG Flp pilus assembl 22.6 91 0.002 26.9 3.2 25 46-70 14-41 (185)
92 PHA01735 hypothetical protein 22.0 57 0.0012 23.3 1.4 39 103-144 14-52 (76)
93 PRK11173 two-component respons 21.5 1.1E+02 0.0025 26.6 3.7 51 78-144 3-53 (237)
94 TIGR01185 devC DevC protein. T 21.5 7.4E+02 0.016 23.9 11.9 63 258-320 284-352 (380)
95 smart00851 MGS MGS-like domain 21.4 76 0.0016 23.6 2.1 24 126-149 43-66 (90)
96 PRK09468 ompR osmolarity respo 20.3 1.5E+02 0.0033 25.7 4.3 51 78-144 5-55 (239)
97 PRK10766 DNA-binding transcrip 20.2 1.3E+02 0.0028 25.7 3.7 50 79-144 3-52 (221)
No 1
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.91 E-value=1.5e-25 Score=211.69 Aligned_cols=266 Identities=21% Similarity=0.376 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcC---CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCC
Q psy17040 51 PRVMLFIFALPVMQVILFCLAIGR---DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPD 126 (354)
Q Consensus 51 k~~l~~~il~Pli~~~l~~~~~~~---~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s 126 (354)
|+.+++.+++|++++++++..+.. +.++.+++++|+|+++ .++++.+.+++++. ....+.|
T Consensus 1 K~~l~~~il~pi~~~~~~~~~~~~~~~~~~~~~v~vv~~~~~~---------------~~~~l~~~l~~~~~~~~~~~~~ 65 (344)
T PF12698_consen 1 KSFLFFIILLPILLILLIGLIFSNSSSDPSPIPVAVVDEDNSS---------------LSKQLVQMLSNSPNFDVVEYDS 65 (344)
T ss_dssp -------------------------------EEEEEEETT-SH---------------HHCCCHHHHCTSSCCEEEECS-
T ss_pred CceeeeehHHHHHHHHHHHHHHHcCcCCCCCCeEEEEeCCCCh---------------HHHHHHHHHhcCCCcceeeeCC
Confidence 567789999999999998876643 3678999999999864 56677788877653 2357889
Q ss_pred HHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17040 127 PESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLST 206 (354)
Q Consensus 127 ~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (354)
++|+++++++|++++++++|+||++++.. +++ .++++++.|+.+......+++.+++..+..+.+...
T Consensus 66 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 133 (344)
T PF12698_consen 66 EEEAKDALKNGKIDAIIVIPKNFSQDLLS---SGE--------SPNITVYINSSNPHSSQIIQNALSSLLQQLNASSEG- 133 (344)
T ss_dssp HHHHHHHHHHHT-SEEEEE-TTCCCHCH----TT----------ECCEEEESSSSHHHHHHHHHHHHHHHHHHHHCCCG-
T ss_pred HHHHHHHHHhCCCcEEEEcCccccccccc---cCC--------cceEEEEeecccchhhhhhhccccccchhhhhhhhh-
Confidence 99999999999999999999999987761 244 267888889887777666666666533322221100
Q ss_pred cCCCCCccCCCeEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHH
Q psy17040 207 CDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVIT 286 (354)
Q Consensus 207 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~ 286 (354)
.........+++.+.....++..++.+++.+.+ .+++++.+....+..+.+||++|+.+|+.++|++++++++||++.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~ 211 (344)
T PF12698_consen 134 -KSAIQSSNSPIPVESIPLSNPSSSFASYLIPFI-LFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLA 211 (344)
T ss_dssp -CCCCHHHT--EEEEEEEECCCHHHCHTT---------------------------------------------------
T ss_pred -hhhhccccccccccccccccccccccccccccc-hhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHH
Confidence 001111234555544333334445666666643 343344444445668899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040 287 QFVVMCGQTALVLIFMIFVFG---VECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK 349 (354)
Q Consensus 287 ~~~v~~i~~~i~l~~~~~~f~---v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~ 349 (354)
.++++++++++++++ ++| +++. +.+.+++..++++++..++|++++.++++.+.+..++
T Consensus 212 ~~~~~~i~~~i~~~i---~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~ 273 (344)
T PF12698_consen 212 YFLVSLIQSLIIIII---IFGISGIPFG-NFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVA 273 (344)
T ss_dssp ------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHH---HhccccCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999998876653 667 7776 6666778888999999999999999999998886543
No 2
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.8e-19 Score=174.14 Aligned_cols=283 Identities=16% Similarity=0.088 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHhhhhhcChhHHHHH--HHHHHHHHHHHHHHhc----CCCCCceEEEEeCCCCcccccCCCCCCCcccch
Q psy17040 33 VLFLTISMLVITSSTLFSPRVMLFI--FALPVMQVILFCLAIG----RDPTGLHLAIVNQEMDWATKACPVLSNCSFTHL 106 (354)
Q Consensus 33 ~~~~~i~~~elk~~~~Rdk~~l~~~--il~Pli~~~l~~~~~~----~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~ 106 (354)
+.+|+++|||+| +.+|||..++.+ ++.|++...+...... ...++.+++++|++ .+
T Consensus 2 ~~~~~v~~ke~~-~~~r~r~~~~~~~~v~~pl~~~~~~~i~~~~~~~~~~~~~~ia~~~~~-~~---------------- 63 (407)
T COG1668 2 SKLWTVAKKELK-DLLRDRKFLLSTFIVLLPLLLAGISIIISLFEKAGKEEKLKIAVVDEG-YA---------------- 63 (407)
T ss_pred chHHHHHHHHHH-HHHhcchhhHhHHHHHHHHHHhhHHHHHHhhccccccccceeeeCCCc-hh----------------
Confidence 567899999999 999999999886 6777766665443332 22445667777776 12
Q ss_pred hHHHHhhCCCCc---ccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCchHH
Q psy17040 107 SCRYLNSLPNDT---IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQ 183 (354)
Q Consensus 107 s~~li~~l~~~~---~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~~~~ 183 (354)
.+...++..+ .......+.++++++.+++++|+.+++|+||.+.+......++. ...+...+. .
T Consensus 64 --~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~d~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~ 130 (407)
T COG1668 64 --VLESGLKAVPGAVDTGIAGSSIEDAEEAVKLGKIDGLLVIPRNFADTVEADEYAGEL--------VLVKEDISR---L 130 (407)
T ss_pred --HHHHHHhcCCCccceeecccchHHHHHHHHhccCCeEEEecCCccchhhhchhhhhh--------hhhcccccc---h
Confidence 2233333322 23345567889999999999999999999998877741000111 011111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCeEEecccc------cCCCCChh----HHHHHHHHHHHHHHHHHHHH
Q psy17040 184 IGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIY------GSNDPSFT----DFVAPGVILTIVFFLAVALT 253 (354)
Q Consensus 184 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~----~~~~p~ll~~~l~~~~~~~~ 253 (354)
.........+...++++.+. +...+....|.+++.+.. ..+..... .+.++.++.++.+..+..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~l~~----~~~~q~l~~p~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~ 206 (407)
T COG1668 131 QADLTYARISKLLAELGLSV----GERLQALGIPPKVDNPVVSEGGESLPPEEISAALLLVAILIFLLFFIPLSYAGQMV 206 (407)
T ss_pred hhHHHHHHHHHHHHHhcccc----ccchhhhcCCcccccceeccCcccCChHhhchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222222222111 011111122222221111 11112223 33344444444444444455
Q ss_pred HHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhcC--ccchh-HHHHHH-H
Q psy17040 254 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---------FVFGV--ECKGD-LLLVII-L 320 (354)
Q Consensus 254 ~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~---------~~f~v--~~~g~-~~~~ll-~ 320 (354)
+.++.+|||+|++|-|+++|+++.++++||+++...++++|.+++++.+. ...+. ..... +....+ .
T Consensus 207 ~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (407)
T COG1668 207 ADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSL 286 (407)
T ss_pred HHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999888776651 11111 11111 111112 2
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040 321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQ 350 (354)
Q Consensus 321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~ 350 (354)
.+...+...+++.+++..+++.++|.+...
T Consensus 287 ~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~ 316 (407)
T COG1668 287 FLLGLLLYAALAAFLGAMAGSIKEAQTLIS 316 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 222334445578899999999999988543
No 3
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.81 E-value=1.3e-18 Score=149.30 Aligned_cols=149 Identities=9% Similarity=0.112 Sum_probs=110.2
Q ss_pred HHHhhhhhcChh---HHHHHHHHHHHHHHHHHHHhc---CCCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhC
Q psy17040 41 LVITSSTLFSPR---VMLFIFALPVMQVILFCLAIG---RDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSL 114 (354)
Q Consensus 41 ~elk~~~~Rdk~---~l~~~il~Pli~~~l~~~~~~---~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l 114 (354)
||+| +++|||+ .+++++++|+++.++++++++ .+.+++||||||+|+++.. +...-.+|+++++.+
T Consensus 1 ~E~~-~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~~~~~~~~lpvaVVd~D~s~~~-------~~~~~~~s~~l~~~l 72 (164)
T TIGR03061 1 SELK-RLRKNKLLRIALIAIMLIPLLYGGLFLWAFWDPYGNLDNLPVAVVNEDKGATY-------DGKTLNAGDDLVKEL 72 (164)
T ss_pred ChHH-HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCCeEEEEECCCCCCc-------CCcccchHHHHHHHH
Confidence 6899 9999996 455679999999999999885 4578999999999998620 111123489999999
Q ss_pred CCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHHHhhCCCCCccccccceEEEEEcCc-hHHHHHHHHHHHH
Q psy17040 115 PNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMS-NQQIGLMLNRDLQ 193 (354)
Q Consensus 115 ~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~~~~g~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~l~ 193 (354)
++++.......+++||++++++|+++++|+||+||++++.+.. .|+. .++++.++.|.. +...+..+++.++
T Consensus 73 ~~~~~~~~~~~~~~ea~~~l~~g~~~~~ivIP~~Fs~~l~~~~-~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~ 145 (164)
T TIGR03061 73 KKNDDLDWHFVSAKEAEKGLADGKYYMVITIPEDFSENATSLL-DDQP------KKAQLTYKTNDANNYIASQIAETAAE 145 (164)
T ss_pred hcCCCcceEEcCHHHHHHHhHcCcEEEEEEECcchhHHHHhhc-cCCC------CccEEEEEECCCcchHHHHHHHHHHH
Confidence 8876333334499999999999999999999999999998421 1222 146778777776 4445556666666
Q ss_pred HHHHHHHHHHH
Q psy17040 194 LSYRDFAQDLL 204 (354)
Q Consensus 194 ~~~~~~~~~~~ 204 (354)
.+....++++.
T Consensus 146 ~~~~~~~~~~~ 156 (164)
T TIGR03061 146 KVKTSVSKSIT 156 (164)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 4
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.30 E-value=7.5e-11 Score=108.22 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 230 PSFTDFVAPGVILTIVFFLAVALTSS-ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 308 (354)
Q Consensus 230 ~~~~~~~~p~ll~~~l~~~~~~~~~~-~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v 308 (354)
.+|.+|++||++.+.+++.++..+.. .+.+||++|+++|++++|+++.++++||++...+.++++..++.++ ...+|.
T Consensus 54 ~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~-~~~~g~ 132 (253)
T TIGR01291 54 VSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVV-TATLGY 132 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence 46999999999999888776554443 6689999999999999999999999999999998888888765544 346666
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040 309 ECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK 348 (354)
Q Consensus 309 ~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~ 348 (354)
....+++.++.+.+++.+++.++|++++.++++.+++..+
T Consensus 133 ~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i 172 (253)
T TIGR01291 133 IEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFY 172 (253)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5555666666666778888999999999999999888754
No 5
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=99.25 E-value=6.7e-09 Score=100.95 Aligned_cols=219 Identities=18% Similarity=0.214 Sum_probs=110.2
Q ss_pred CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC--c-cccc-----ccC-CHHHHHHHhHcCCeEEEEEe
Q psy17040 75 DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND--T-IIKD-----YYP-DPESAINAVRVGDAWGALYF 145 (354)
Q Consensus 75 ~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~--~-~~~~-----~~~-s~~ea~~~l~~g~v~~~v~I 145 (354)
..+++|+++||+|++.. ..+...++...+.++..++. + ...+ .+. +++|+++++.+||+.++|+|
T Consensus 26 ~~~nL~v~VV~~D~g~~------~~~~~iG~~v~~~~~~~~~~~~~~~~w~~~~~s~f~~~~~~~~~~V~~~kywaAI~I 99 (382)
T PF12051_consen 26 NLHNLPVAVVNQDGGGN------GTIPNIGNAVVQALQSNPSKGRSFGDWHFVNASEFPESPEEAREGVYDGKYWAAIVI 99 (382)
T ss_pred ccCCceEEEEEcCCCCC------ccCcchHHHHHHHHHhcchhcccCCCeEEechHhccCCHHHHHHHHhcccEEEEEEe
Confidence 35799999999999810 00111222333444444432 1 1111 223 89999999999999999999
Q ss_pred CcChHHHHHHHH-hhCCCCCccccccceEEEEEcC-ch-HHHHHHHHHHHHHHHHHHHH----HHH----hhcC-CC---
Q psy17040 146 TDNFTDALVARM-VLGRDADEETLDQSEIRVWLDM-SN-QQIGLMLNRDLQLSYRDFAQ----DLL----STCD-QN--- 210 (354)
Q Consensus 146 P~~Fs~~l~~~~-~~g~~~~~~~~~~~~i~i~~~~-~~-~~~~~~~~~~l~~~~~~~~~----~~~----~~~~-~~--- 210 (354)
|+||++++.+.. ++|.. +......+++++++ .+ ....+.+...+++..+.+.. +.. ++.. .+
T Consensus 100 ~~naT~~l~~al~~~~~~---~~n~s~~i~~~y~~~R~~~~~~s~i~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (382)
T PF12051_consen 100 PPNATANLYSALSQNGNS---SYNPSDAITVYYESGRDPTAVSSYILPSIQTLETAVNSQFGQQYLPSLLQNLSNSAAAA 176 (382)
T ss_pred CCChhHHHHHHhccCCCC---ccCCCccEEEEEecCcchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCccchhh
Confidence 999999999765 23321 12222456666654 33 22233333333333332222 211 1111 00
Q ss_pred -----CCccCCCeEEecccccC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHH
Q psy17040 211 -----PKIADIPIQFKEPIYGS-NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHV 284 (354)
Q Consensus 211 -----~~~~~~~v~~~~~~~~~-~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gki 284 (354)
++...+|++.+...+.. +++.......-+++..+++-+........+..|- | ...++++..+++-|+
T Consensus 177 ~~~~a~~~la~p~~~~~~d~rP~~~~~~~~~~~vg~iy~li~~ff~~~~~~~i~~~~--~-----~~~~l~~~~~~~~R~ 249 (382)
T PF12051_consen 177 LLANAPQALAQPITFTYIDLRPFTDPVALAPSQVGLIYLLILTFFQFMFLGPIHMEM--G-----LRRKLKPRHYLIYRW 249 (382)
T ss_pred hhccchhhhcCCCceEEEecccCCchhhcchhhHHHHHHHHHHHHHHHHhhhHHHhh--h-----cccccCHHHHHHHHH
Confidence 11112354443322211 1111111111121111111110111111222222 1 244668889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17040 285 ITQFVVMCGQTALVLIFMIFVFGVEC 310 (354)
Q Consensus 285 l~~~~v~~i~~~i~l~~~~~~f~v~~ 310 (354)
+...+..++.++.+.++. ..|++|+
T Consensus 250 ~~~~~~~~~~Sl~~~~v~-~af~~~~ 274 (382)
T PF12051_consen 250 IISWIAYFFLSLFYSLVS-LAFQVDF 274 (382)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHCCCc
Confidence 998888888777766554 6899888
No 6
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.23 E-value=2.4e-10 Score=103.47 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy17040 232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK 311 (354)
Q Consensus 232 ~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~ 311 (354)
+.+|+.|+.+.+..++.+....+..+.+||++|+++|++++|+++.++++||++...+..+++..+.++ ...++|+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~g~~~~ 112 (232)
T TIGR00025 34 RGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLV-IGFVLGFRFA 112 (232)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcC
Confidence 446778888888887787888888999999999999999999999999999988888887777655544 4567899887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q psy17040 312 GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYN 345 (354)
Q Consensus 312 g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a 345 (354)
++....++...+..+++.++|.+++.++++.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (232)
T TIGR00025 113 GGALTALTLGAVIIALGTALFAALGLVAGGTLQA 146 (232)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 6666555556666777788888888888765554
No 7
>COG1511 Predicted membrane protein [Function unknown]
Probab=99.16 E-value=4.3e-10 Score=118.26 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=82.4
Q ss_pred HHHHHHHhhhhhcChhHHHHHHH---HHHHHHHHHHHHhcC---CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHH
Q psy17040 37 TISMLVITSSTLFSPRVMLFIFA---LPVMQVILFCLAIGR---DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRY 110 (354)
Q Consensus 37 ~i~~~elk~~~~Rdk~~l~~~il---~Pli~~~l~~~~~~~---~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~l 110 (354)
.++++++| +++|+|..++.++. +|.++..++-..+.. ...++||||||||.+.. .+.-.-.++.++
T Consensus 2 ~~~~~~~k-~i~k~~~~li~~i~i~vip~ly~~~~i~s~~dpy~~~~~lpVAVVNeDkg~t-------~~Gk~~~iG~~~ 73 (780)
T COG1511 2 KMFKRDWK-SILKNKLLLIPIIAILVLPSLYAFFFLGALWDPYGNTSKLPVAVVNEDKGAT-------FNGKKVNIGDDL 73 (780)
T ss_pred cccHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCceEEEECCCCcc-------cCCCeeehHHHH
Confidence 46789999 99999988776554 333333332222211 24679999999997642 122225578899
Q ss_pred HhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHH
Q psy17040 111 LNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVA 155 (354)
Q Consensus 111 i~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~ 155 (354)
++.+++++..-+++.|+++|++.+++|+++++++||+||++++.+
T Consensus 74 V~~L~kn~~~~w~fVs~~~A~~gl~~g~Yya~i~IP~dFS~~a~S 118 (780)
T COG1511 74 VKTLKKNKSLDWHFVSREEAEKGLKDGKYYAVIYIPKDFSKNALS 118 (780)
T ss_pred HHHhhcCCCCCeEEeCHHHHHhhhhhCceEEEEEecchhhhhhhh
Confidence 999988875457778999999999999999999999999999986
No 8
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.15 E-value=5.9e-10 Score=94.30 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH---HHH
Q psy17040 250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTIL---QGL 326 (354)
Q Consensus 250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~---~~l 326 (354)
.+..+..+.+|||+|+++|++++|++++++++||+++..+.+++|..++++++ +++|+++.++++..++...+ +.+
T Consensus 5 ~~~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~-~~~g~~~~~~~~~~~~~~~~~~l~~~ 83 (152)
T TIGR01248 5 SLFNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA-LALGFRFRNGVAAALLFLLIPSIFGI 83 (152)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 45666788999999999999999999999999999999999999999888877 46799887665544444433 344
Q ss_pred HHHHHHHHHHHhccchhh
Q psy17040 327 CGMCFVFGRKNIFEWKLY 344 (354)
Q Consensus 327 ~~~~lGllis~l~k~~~~ 344 (354)
...++|..++...|+++.
T Consensus 84 ~f~~l~~~~a~~~~~~~~ 101 (152)
T TIGR01248 84 AFAALVMAMALRKEGRFA 101 (152)
T ss_pred HHHHHHHHHHHHcCCHHH
Confidence 444555555555565544
No 9
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.15 E-value=1.2e-09 Score=99.45 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCccc----hhHHHHHHHH
Q psy17040 248 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTAL--VLIFMIFVFGVECK----GDLLLVIILT 321 (354)
Q Consensus 248 ~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i--~l~~~~~~f~v~~~----g~~~~~ll~~ 321 (354)
.....+..++.+|||+||+|.++++|++++++++||.++...+..+.... ........++.+.. ++....++..
T Consensus 64 ~~p~l~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (240)
T TIGR03518 64 LIPAITMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGL 143 (240)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHH
Confidence 33455667899999999999999999999999999999998877665442 22233445665532 3334445555
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040 322 ILQGLCGMCFVFGRKNIFEWKLYNGNKKQ 350 (354)
Q Consensus 322 ~~~~l~~~~lGllis~l~k~~~~a~~~~~ 350 (354)
.+++.+..++|+++|+++||+..|..++.
T Consensus 144 ~l~~~~~~aig~~iSsl~~~q~~a~~~~~ 172 (240)
T TIGR03518 144 LLLGSVYTAIGLFASSLTENQIVAFIIAV 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 56677888999999999999999865543
No 10
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.09 E-value=3.7e-08 Score=90.54 Aligned_cols=122 Identities=30% Similarity=0.382 Sum_probs=102.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG 307 (354)
Q Consensus 228 ~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~ 307 (354)
+..++..|..|+++.+.+++.+.......+.+||+.|+++|++.+|+++...++++.++..++..++..++++...+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g 161 (286)
T COG0842 82 PSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG 161 (286)
T ss_pred CCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45678899999999998888777777777777899999999999999988888999999999998888888888899999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-Hhccchhhhhhhh
Q psy17040 308 VECKGDLLLVIILTILQGLCGMCFVFGRK-NIFEWKLYNGNKK 349 (354)
Q Consensus 308 v~~~g~~~~~ll~~~~~~l~~~~lGllis-~l~k~~~~a~~~~ 349 (354)
+.+.++.+..+....++.+...++|++++ ...++.+.+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~ 204 (286)
T COG0842 162 VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVG 204 (286)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888888889999999999766 3555566655444
No 11
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.09 E-value=3.6e-09 Score=95.93 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=96.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040 230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE 309 (354)
Q Consensus 230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~ 309 (354)
.+|..|+.||++.+.++..+.. .+..+..||++|+++|+.++|+++.++++||.+...+..+++.++..++....++.+
T Consensus 44 ~~y~~fl~~G~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~ 122 (236)
T TIGR01247 44 VDYMTYLVPGIVAMTVFNMSFF-SGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILK 122 (236)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999877765443 455778899999999999999999999999999999999999888887777777777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040 310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK 349 (354)
Q Consensus 310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~ 349 (354)
+.+.+..+ +...+++++..++|.+++.+.++.+.+..+.
T Consensus 123 ~~~~~~~~-~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~ 161 (236)
T TIGR01247 123 PSGVIPTL-VLAFIVGVALSGLGVAIAARMDSMEGFQIIM 161 (236)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 65544444 3455677788999999999999988776644
No 12
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=99.08 E-value=2.9e-09 Score=98.41 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCccchh-HHHHHHH
Q psy17040 249 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM-------IFVFGVECKGD-LLLVIIL 320 (354)
Q Consensus 249 ~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~-------~~~f~v~~~g~-~~~~ll~ 320 (354)
+...++..+.+|||+||++-+++.|++|.+++.||.++..+.+++ ..+.++++ ....+.+.... .....+.
T Consensus 82 ~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (277)
T PF12679_consen 82 AIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLL 160 (277)
T ss_pred HHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 456777799999999999999999999999999999999998543 22222221 12234444322 2222222
Q ss_pred HHHHHH---HHHHHHHHHHHhccchhhhhhhhhh
Q psy17040 321 TILQGL---CGMCFVFGRKNIFEWKLYNGNKKQD 351 (354)
Q Consensus 321 ~~~~~l---~~~~lGllis~l~k~~~~a~~~~~~ 351 (354)
.....+ +..++|+++|++++|...|...+..
T Consensus 161 ~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~ 194 (277)
T PF12679_consen 161 FVLLLLAVLVFISLGLLISSLFRSSASAILASLG 194 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 222222 4589999999999999998876654
No 13
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.07 E-value=4.5e-09 Score=96.40 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=93.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17040 231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC 310 (354)
Q Consensus 231 ~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~ 310 (354)
+|..|+.||++.+.++..+ +..+..+..||++|+++|++.+|+++..+.+||.++..+..+++..++++++ .++|.+.
T Consensus 57 ~y~~fl~pGi~~~~~~~~~-~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~-~~~g~~~ 134 (253)
T TIGR03861 57 TYEVYIVPGLCCMILLFNG-MQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA-ALVGVQP 134 (253)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 6899999999999887654 4456678899999999999999999999999999999999999887665554 4567654
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040 311 K-GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK 348 (354)
Q Consensus 311 ~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~ 348 (354)
. .+++..+...++..+++.++|+++|.++++.+++..+
T Consensus 135 ~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i 173 (253)
T TIGR03861 135 PVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGV 173 (253)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3 3344444455667788889999999999998877654
No 14
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.05 E-value=3.6e-09 Score=94.00 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=99.4
Q ss_pred CCCeEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy17040 215 DIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQ 294 (354)
Q Consensus 215 ~~~v~~~~~~~~~~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~ 294 (354)
.+|++++++. .|+..++.+++.|+++.+.+++.+.... .+..+|++ |...+|++++++++||++...+++++|
T Consensus 5 ~~pv~~~~~~-~~~~~~~~~~~~p~~~~~~l~~ga~~~~--~~~~~~~~----~~~~~p~~~~~~~~~k~~~~~~~~~~~ 77 (208)
T TIGR03062 5 AEPVKLKHSD-YDDVPNYGTGLAPYFLSLALFVGALVLN--MIIPPLSR----RALPKSARSWRIALAKLLPGGLIGVLQ 77 (208)
T ss_pred CCCceeceee-ccCCCCCcchhHHHHHHHHHHHHHHHHH--HHhccccc----cccccCchHHHHHHHHHHHHHHHHHHH
Confidence 4588776543 3456678899999999988876654443 23455554 346899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Q psy17040 295 TALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNK 348 (354)
Q Consensus 295 ~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~ 348 (354)
..+++++..+.+|+++. +.+.+++...++++++.++|++++.++++..++...
T Consensus 78 ~~~~~~i~~~~~g~~~~-~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~ 130 (208)
T TIGR03062 78 AIILYGVLILGLGLDPA-HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLAL 130 (208)
T ss_pred HHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Confidence 99988888888999885 667777788888999999999999999977655443
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.01 E-value=1.2e-08 Score=93.77 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=93.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040 230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE 309 (354)
Q Consensus 230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~ 309 (354)
.+|..|+.||++.+..+..+...++.++.+||+.|+++|++++|+++..++.||+++..+.++++..++++++..++|.+
T Consensus 57 ~~y~~fl~pGll~~~~~~~~~~~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~ 136 (257)
T PRK15066 57 FSYMQFIVPGLIMMSVITNSYSNVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQ 136 (257)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46899999999999988887777777889999999999999999999999999999999999998887777777777877
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Q psy17040 310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKK 349 (354)
Q Consensus 310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~ 349 (354)
+.+ .+..+...++..++....|++++.+.++.+++..+.
T Consensus 137 ~~~-~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~ 175 (257)
T PRK15066 137 VHH-WGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIP 175 (257)
T ss_pred HhH-HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 643 233333333333434445889998888877777654
No 16
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=98.33 E-value=1.6e-05 Score=71.14 Aligned_cols=108 Identities=13% Similarity=0.233 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q psy17040 232 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK 311 (354)
Q Consensus 232 ~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~ 311 (354)
......|+++=+...+.+......+..+|+|+|+++.++.+|+++..+++||.++..+...+-..+..-+....+|.+..
T Consensus 43 ~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~ 122 (215)
T PF03379_consen 43 LLARVAPGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPIS 122 (215)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 34456788877777776666667789999999999999999999999999999999988887777666666678898874
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy17040 312 GDLLLVIILTILQGLCGMCFVFGRKNIFE 340 (354)
Q Consensus 312 g~~~~~ll~~~~~~l~~~~lGllis~l~k 340 (354)
++..+++...+++....++|-+.+.++-
T Consensus 123 -~~~~~~~~l~lgt~gl~~igtl~aal~~ 150 (215)
T PF03379_consen 123 -SWPLLLLSLLLGTLGLAAIGTLLAALAA 150 (215)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5555566666777777788888777654
No 17
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=98.24 E-value=1.2e-05 Score=74.57 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHhcCccchh----HHHHHHH
Q psy17040 248 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL--IF-MIFVFGVECKGD----LLLVIIL 320 (354)
Q Consensus 248 ~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l--~~-~~~~f~v~~~g~----~~~~ll~ 320 (354)
.+...++..+.+|+++||.+.+++.|++|.+++.||.++......+...+.. +. ....++.+...+ .......
T Consensus 74 ~~~~l~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (278)
T COG1277 74 LAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGS 153 (278)
T ss_pred HHHHHccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 3455667789999999999999999999999999999999988887777665 22 233455544222 2345566
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040 321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQDS 352 (354)
Q Consensus 321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~ 352 (354)
..++.....+++.+++.+.++...+..++...
T Consensus 154 ~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 185 (278)
T COG1277 154 SLLYGLVLLSISLLISSLFSSSSLALLVSIIL 185 (278)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 66788888899999999999999888877654
No 18
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=98.20 E-value=4.5e-05 Score=67.57 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=87.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q psy17040 230 PSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE 309 (354)
Q Consensus 230 ~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~ 309 (354)
++...-..|+++=....+.+.......+.+|+|+|+++.++.+|.++..+++||+++.++...+...+..-.....+|.+
T Consensus 38 ~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~ 117 (211)
T TIGR01190 38 LKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLD 117 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34445578888777666666666667889999999999999999999999999999999888777666665556688998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040 310 CKGDLLLVIILTILQGLCGMCFVFGRKNIFEW 341 (354)
Q Consensus 310 ~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~ 341 (354)
..+. +.+.+.+++.+.....+|-+.+.++-+
T Consensus 118 ~~~~-~~l~l~LllGt~~Ls~igtl~aALt~g 148 (211)
T TIGR01190 118 VPAW-GALALTLLLGTPALSFLGAIGAALTVG 148 (211)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8544 556666677778888888888877654
No 19
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=97.79 E-value=9.5e-07 Score=77.62 Aligned_cols=94 Identities=20% Similarity=0.394 Sum_probs=81.9
Q ss_pred HHHHHHHhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy17040 256 ALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFG 334 (354)
Q Consensus 256 ~i~~Ek~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~lGll 334 (354)
....|+++++++|...+|. ++..++++|.+...+..+++..++.++....+|.++. +....++..++..++..++|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~ 150 (210)
T PF01061_consen 72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFLLILLLSILCSSGLGLL 150 (210)
T ss_pred hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchheecccccccccccccccc
Confidence 4678899999999999999 9999999999999999999999888877777788876 5667777777788889999999
Q ss_pred HHHhccchhhhhhhhh
Q psy17040 335 RKNIFEWKLYNGNKKQ 350 (354)
Q Consensus 335 is~l~k~~~~a~~~~~ 350 (354)
++.++++.+.+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~ 166 (210)
T PF01061_consen 151 LAALFPSFRDASAISS 166 (210)
T ss_pred cccchhhhhhhhhhhh
Confidence 9999999888877654
No 20
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=97.74 E-value=0.0013 Score=57.62 Aligned_cols=100 Identities=12% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhc-Cccchh-----HHHHHHH
Q psy17040 250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFG-VECKGD-----LLLVIIL 320 (354)
Q Consensus 250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~---~~f~-v~~~g~-----~~~~ll~ 320 (354)
....+..+.+|+++|+.+.+.+.|.+|.+++.+|++...+..++..++..+... ..++ .++..+ ....++.
T Consensus 63 ~~~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
T PF12730_consen 63 IILAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLL 142 (232)
T ss_pred HHHHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHH
Confidence 445666788999999999999999999999999999999988877666433322 2333 222211 2223334
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040 321 TILQGLCGMCFVFGRKNIFEWKLYNGNKKQ 350 (354)
Q Consensus 321 ~~~~~l~~~~lGllis~l~k~~~~a~~~~~ 350 (354)
.+...+....+ .+++.+.||.-.+..++.
T Consensus 143 ~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~ 171 (232)
T PF12730_consen 143 FLLLSLFISLL-LFISSLFRNSIVAIIISI 171 (232)
T ss_pred HHHHHHHHHHH-HHHHHHHhhHHHHHHHHH
Confidence 44444445555 788899998666654443
No 21
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0025 Score=55.56 Aligned_cols=113 Identities=11% Similarity=0.160 Sum_probs=85.2
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 228 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG 307 (354)
Q Consensus 228 ~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~ 307 (354)
|+++...-..|+++-....+.++..-......|+|.|++|.++.+|.....++.||+++......+--++..=+....+|
T Consensus 42 pd~~~la~iaPgilWia~lLA~lL~l~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~ 121 (221)
T COG2386 42 PDPQLLARIAPGILWIAALLASLLGLERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLN 121 (221)
T ss_pred CchhHHHHhcchHHHHHHHHHHHHhHHHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 45555556788877666555555555568889999999999999999999999999999999887766665555566788
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040 308 VECKGDLLLVIILTILQGLCGMCFVFGRKNIFEW 341 (354)
Q Consensus 308 v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~ 341 (354)
++. ++++.+.+..+++......+|-..+.++-.
T Consensus 122 ~~~-~~~~~~~ltLllGtp~ls~~ga~gaALtv~ 154 (221)
T COG2386 122 MDV-GALGALALTLLLGTPALSFLGAVGAALTVG 154 (221)
T ss_pred CCH-hHHHHHHHHHHhcchHHHHHHHHHHHHHhc
Confidence 887 566777777777766666666666665543
No 22
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.23 E-value=0.0043 Score=71.61 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Q psy17040 233 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG 312 (354)
Q Consensus 233 ~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g 312 (354)
..+.+|.++++.+++. .......++.|||++.-|-+....++.+-+.++-++.++++.++.++++.++... ..+-...
T Consensus 651 ~~~~~pl~~~la~~~~-~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~~~~s 728 (2272)
T TIGR01257 651 LNRCFPIFMVLAWIYS-VSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRILHYS 728 (2272)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CceeecC
Confidence 3456777766665544 4445568899999999999999999999999999999888877766554333221 1222234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Q psy17040 313 DLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQD 351 (354)
Q Consensus 313 ~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~ 351 (354)
++..+++..++|++..+++++++|.|+.+.+.|..++.+
T Consensus 729 ~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~l 767 (2272)
T TIGR01257 729 DPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGV 767 (2272)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 567788888999999999999999999999887765543
No 23
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=96.98 E-value=0.041 Score=50.21 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-Cccc-hhHHHHHHHHHH
Q psy17040 250 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI----FVFG-VECK-GDLLLVIILTIL 323 (354)
Q Consensus 250 ~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~----~~f~-v~~~-g~~~~~ll~~~~ 323 (354)
....+..+..|++++.++.+++.|+++.++..+|++......++...+.++... ++++ .+.. .......+...+
T Consensus 61 ~i~~~~~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~ 140 (248)
T TIGR03733 61 GIVCGMVVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLII 140 (248)
T ss_pred HHHHHHHHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 344466778999999999999999999999999999988888876654322222 1222 1221 233334444555
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy17040 324 QGLCGMCFVFGRKNIFEW 341 (354)
Q Consensus 324 ~~l~~~~lGllis~l~k~ 341 (354)
.++....+++.++...++
T Consensus 141 ~sl~~~~l~l~ls~~~g~ 158 (248)
T TIGR03733 141 GSLFLYIIHLFVSFAFGM 158 (248)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 667777788888877775
No 24
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.76 E-value=0.39 Score=56.27 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=73.1
Q ss_pred HHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cc--hhHHHHHHHHHHHHHHHHHHH
Q psy17040 256 ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE-CK--GDLLLVIILTILQGLCGMCFV 332 (354)
Q Consensus 256 ~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~-~~--g~~~~~ll~~~~~~l~~~~lG 332 (354)
-+++||+.+.-.-..++.+++..|.++.++.-+++.++.+++++++ ..+|+.+ +. .++..+++++++|+++++-+.
T Consensus 1700 ~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i-~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~t 1778 (2272)
T TIGR01257 1700 YLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGI-FIGFQKKAYTSPENLPALVALLMLYGWAVIPMM 1778 (2272)
T ss_pred eeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChhhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 4579999988777889999999999999999888888876665543 4566643 32 356677778889999999999
Q ss_pred HHHHHhccchhhhhh
Q psy17040 333 FGRKNIFEWKLYNGN 347 (354)
Q Consensus 333 llis~l~k~~~~a~~ 347 (354)
-++|.++++...|..
T Consensus 1779 Yl~SflF~~~~~A~~ 1793 (2272)
T TIGR01257 1779 YPASFLFDVPSTAYV 1793 (2272)
T ss_pred HHHHHhhCCchhHHH
Confidence 999999999888854
No 25
>PLN03211 ABC transporter G-25; Provisional
Probab=96.69 E-value=0.02 Score=59.74 Aligned_cols=90 Identities=9% Similarity=0.099 Sum_probs=73.2
Q ss_pred HhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 262 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF 339 (354)
Q Consensus 262 ~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~ 339 (354)
|+.++.|=..+.. +...++++|.+.-+.+.++..+++..+.++.-|.+.. +..+..+++++++.+++.++|+++++++
T Consensus 464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~ 543 (659)
T PLN03211 464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAI 543 (659)
T ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3345555555555 8899999999999999999988888888888888764 4466677788889999999999999999
Q ss_pred cchhhhhhhhhh
Q psy17040 340 EWKLYNGNKKQD 351 (354)
Q Consensus 340 k~~~~a~~~~~~ 351 (354)
+|.+.|+.++-+
T Consensus 544 ~~~~~a~~~~~~ 555 (659)
T PLN03211 544 MDAKKASTIVTV 555 (659)
T ss_pred CCHHHHHHHHHH
Confidence 999999876644
No 26
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.52 E-value=0.038 Score=57.32 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=71.3
Q ss_pred HhChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 262 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF 339 (354)
Q Consensus 262 ~~gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~ 339 (354)
|+.++.|-..+.. +...++++|++.-+.+.+++.+++.++.++..|.+.. +..+..++++++..+++.++|.+++.++
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~ 497 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAF 497 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666 8889999999999999999988888777777787764 3355556667777888999999999999
Q ss_pred cchhhhhhhhh
Q psy17040 340 EWKLYNGNKKQ 350 (354)
Q Consensus 340 k~~~~a~~~~~ 350 (354)
++...|..++.
T Consensus 498 ~~~~~a~~~~~ 508 (617)
T TIGR00955 498 SSTSMALTVGP 508 (617)
T ss_pred CchHHHHHHHH
Confidence 99999988764
No 27
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.11 Score=46.09 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCccc---hhHHHHHHHHHHHHH
Q psy17040 253 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM---IFVFGVECK---GDLLLVIILTILQGL 326 (354)
Q Consensus 253 ~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~---~~~f~v~~~---g~~~~~ll~~~~~~l 326 (354)
.+....-|++.+-++.++..|++|++++++|+...+++..+...+..... -..+|.+-. ...+.+....++.++
T Consensus 71 i~l~l~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~al 150 (239)
T COG4200 71 IALVLSVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLAL 150 (239)
T ss_pred HHHHHHHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHH
Confidence 33455779999999999999999999999999999988877655543322 123343321 223344555666677
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040 327 CGMCFVFGRKNIFEWKLYNGNKKQDS 352 (354)
Q Consensus 327 ~~~~lGllis~l~k~~~~a~~~~~~~ 352 (354)
-..++-...++.+||..-|..+|.++
T Consensus 151 pl~~lQ~wLsm~fknf~~al~igI~l 176 (239)
T COG4200 151 PLVALQFWLSMRFKNFAVALVIGIFL 176 (239)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHhH
Confidence 77788888999999999999888765
No 28
>PLN03140 ABC transporter G family member; Provisional
Probab=95.79 E-value=0.15 Score=57.83 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=71.8
Q ss_pred ChhhHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy17040 264 GLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIFEW 341 (354)
Q Consensus 264 gtl~rll~sPv-~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~ 341 (354)
.++.|=..+.. +...+.+++++.-+...+++.+++.++.++..|.++. +..+..++++++..+++.++|++++++++|
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 44555555544 8899999999999999999999998888888888764 345566666667788999999999999999
Q ss_pred hhhhhhhhhhc
Q psy17040 342 KLYNGNKKQDS 352 (354)
Q Consensus 342 ~~~a~~~~~~~ 352 (354)
...|..++-+.
T Consensus 1355 ~~~A~~~~~~~ 1365 (1470)
T PLN03140 1355 QQVAAIFAAAF 1365 (1470)
T ss_pred HHHHHHHHHHH
Confidence 99999876554
No 29
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=95.49 E-value=0.54 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=39.6
Q ss_pred HHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17040 255 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM 302 (354)
Q Consensus 255 ~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~ 302 (354)
..+..|++++-.+-+.+.|++|.+++.+|.+...+...+..++..+..
T Consensus 54 ~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~ 101 (206)
T PF13346_consen 54 SSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA 101 (206)
T ss_pred HHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877778899999999999999999999988887766554
No 30
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.47 E-value=0.15 Score=57.74 Aligned_cols=90 Identities=7% Similarity=0.073 Sum_probs=70.4
Q ss_pred HhChhhHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 262 MEGLLDRSWVAG-VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIF 339 (354)
Q Consensus 262 ~~gtl~rll~sP-v~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~ 339 (354)
+|.++.|=.... .+++.+++++.+.-+.+.+++.++..++.++..|.+.. +..+..++++++..+++.+++.++++++
T Consensus 478 eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~ 557 (1394)
T TIGR00956 478 ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVT 557 (1394)
T ss_pred cCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444333333 37889999999999999999998888888877888764 4466667777778888999999999999
Q ss_pred cchhhhhhhhhh
Q psy17040 340 EWKLYNGNKKQD 351 (354)
Q Consensus 340 k~~~~a~~~~~~ 351 (354)
+|...|..++-+
T Consensus 558 ~~~~~A~~~~~~ 569 (1394)
T TIGR00956 558 KTLSEAMTPAAI 569 (1394)
T ss_pred CCHHHHHHHHHH
Confidence 999999886654
No 31
>KOG0059|consensus
Probab=95.20 E-value=3.5 Score=44.79 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHH
Q psy17040 252 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331 (354)
Q Consensus 252 ~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~l 331 (354)
......+.||+.+.--....+++++..+.++-.+--+++.++-..++.. ....|+....++...++++.++|......+
T Consensus 314 ~~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~-~~~~f~~~~~~~~~~~~~~~~l~~~s~i~l 392 (885)
T KOG0059|consen 314 VFLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLI-FVLIFGFFAGNNTVIILLLLLLYIRSAIPL 392 (885)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH-HhheeecccccchHHHHHHHHHHHHHHHHH
Confidence 3345678999888877889999999999999888888887776555443 345666555677788888888999999999
Q ss_pred HHHHHHhccchhhhhhhh
Q psy17040 332 VFGRKNIFEWKLYNGNKK 349 (354)
Q Consensus 332 Gllis~l~k~~~~a~~~~ 349 (354)
..+.+.+++.+..+..+.
T Consensus 393 ~y~~s~~f~~~~~~~v~~ 410 (885)
T KOG0059|consen 393 TYILSFIFSKESTASVIL 410 (885)
T ss_pred HHHHHHHhcCCcCceeeh
Confidence 999999999888876643
No 32
>PLN03140 ABC transporter G family member; Provisional
Probab=95.19 E-value=0.38 Score=54.79 Aligned_cols=79 Identities=5% Similarity=0.052 Sum_probs=67.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhc
Q psy17040 274 VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDS 352 (354)
Q Consensus 274 v~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~-g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~ 352 (354)
.+++.+.+++++.-+.+.++..+++.++.++..|.... +..+..++++++..+++.+++.++++++++...|..++-+.
T Consensus 608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~ 687 (1470)
T PLN03140 608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALV 687 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 37889999999999999999999998888888888764 55666777778888999999999999999999998876543
No 33
>KOG0061|consensus
Probab=94.38 E-value=0.78 Score=47.57 Aligned_cols=76 Identities=7% Similarity=0.078 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchh-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhh
Q psy17040 275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQ 350 (354)
Q Consensus 275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g~-~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~ 350 (354)
+...++++|.++.+.+.++...+...+.++..|.+.... .....++.++..+++.++|+++++..+|...|..++.
T Consensus 429 ~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 429 RLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 678899999999999999999998888888888776433 4455566677888899999999999999887776553
No 34
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=94.18 E-value=0.43 Score=54.25 Aligned_cols=77 Identities=6% Similarity=-0.083 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch-h-------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q psy17040 275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-D-------LLLVIILTILQGLCGMCFVFGRKNIFEWKLYNG 346 (354)
Q Consensus 275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g-~-------~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~ 346 (354)
+...++++|++.-+...+++.+++.++.++..|.+... . ....+++.+++.+++.++|++++++++|...|.
T Consensus 1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956 1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 78899999999999999999988887777777776532 1 456666777788889999999999999999998
Q ss_pred hhhhh
Q psy17040 347 NKKQD 351 (354)
Q Consensus 347 ~~~~~ 351 (354)
.++-+
T Consensus 1249 ~~~~~ 1253 (1394)
T TIGR00956 1249 VLASL 1253 (1394)
T ss_pred HHHHH
Confidence 87654
No 35
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=94.14 E-value=0.7 Score=41.99 Aligned_cols=48 Identities=4% Similarity=0.005 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy17040 252 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 299 (354)
Q Consensus 252 ~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l 299 (354)
..+...-.|++++.++.+++.|+++.+...+|++......++..++.+
T Consensus 58 i~~~~~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~ 105 (241)
T TIGR03732 58 ICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILF 105 (241)
T ss_pred HHHHHHHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678888999999999999999999999998888777666554
No 36
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=93.85 E-value=6 Score=37.37 Aligned_cols=92 Identities=8% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----c-----CC-CCCceEEE-EeCCCCcccccCCCC
Q psy17040 30 TWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAI----G-----RD-PTGLHLAI-VNQEMDWATKACPVL 98 (354)
Q Consensus 30 ~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~----~-----~~-~~~~~vav-vd~D~~~~~~~~~~~ 98 (354)
.|+.+-..-++.-++ .++|||..-+..++.-.+.+++.|... + .. ..++.|-+ .++|.++.
T Consensus 8 ~~~~~h~~~~~~~~~-~l~r~~~~s~~si~ti~i~L~l~g~~~l~~~n~~~~~~~~~~~~~i~vyl~~~~~~~------- 79 (309)
T TIGR00439 8 VFSLQVEYARSALKQ-DLRQQPFGTLLTLIVIAVSLTLPLVMYLGIKNGQSALTQLYPSPQITVYLEKALAQS------- 79 (309)
T ss_pred HHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeCCCCCHH-------
Confidence 477777677778888 999999766654444444444433221 1 11 34456654 45444432
Q ss_pred CCCcccchhHHHHhhCCCCc-ccccccCCHHHHHHHhHc
Q psy17040 99 SNCSFTHLSCRYLNSLPNDT-IIKDYYPDPESAINAVRV 136 (354)
Q Consensus 99 ~~~~~~~~s~~li~~l~~~~-~~~~~~~s~~ea~~~l~~ 136 (354)
..+.+.+.+++.+ .....+.|+|||.+.+++
T Consensus 80 -------~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~ 111 (309)
T TIGR00439 80 -------DADTVVSLLTRDKGVENINYISREDGLAEFQS 111 (309)
T ss_pred -------HHHHHHHHHhCCCCccEEEEECHHHHHHHHHH
Confidence 3456777887765 334566789999998876
No 37
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=2.5 Score=38.99 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 229 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 308 (354)
Q Consensus 229 ~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v 308 (354)
..++.-|+..|++....+..+...+..++.. ++ + -+.-.+.++..+..++.+.......+...+++.+ ..++|.
T Consensus 65 ~~~~~~~l~~G~~~w~f~~~~i~~~~~s~~~-n~-~---li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~-~i~~~~ 138 (263)
T COG1682 65 GLNFLAYLLAGLILWFFFSEAISEGAGSVVA-NA-A---LIKKINFPPLILPVARTLSRLFNFLIHLIIILIF-LIILGV 138 (263)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhHHHHhhh-hH-H---HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Confidence 4577788888887665544444444444433 32 1 1233466788888999999988888877555444 445665
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhh
Q psy17040 309 ECKGDLLLVIILTILQGLCGMCFVFGRKNI---FEWKLYN 345 (354)
Q Consensus 309 ~~~g~~~~~ll~~~~~~l~~~~lGllis~l---~k~~~~a 345 (354)
+...++..+.....+..+.+.|+|+.+|.+ .|+-++.
T Consensus 139 ~~s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i 178 (263)
T COG1682 139 EPSWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQI 178 (263)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHH
Confidence 556677777777777888888999987766 4454444
No 38
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=92.87 E-value=0.17 Score=46.12 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 34 LFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 34 ~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
.+.++.+||+| +..|||..+++.++.|+++++++++.++.
T Consensus 3 ~~~~l~~rel~-~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~ 42 (253)
T TIGR03861 3 CFNGIVLREAL-RFVQQRSRFLSALVRPLLWLLVFAAGFRA 42 (253)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 56788999999 99999999999999999999999988864
No 39
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=92.78 E-value=8.9 Score=36.23 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHh----c-----CC-CCCceEEE-EeCCCCcccccCCCCC
Q psy17040 31 WIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAI----G-----RD-PTGLHLAI-VNQEMDWATKACPVLS 99 (354)
Q Consensus 31 ~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~----~-----~~-~~~~~vav-vd~D~~~~~~~~~~~~ 99 (354)
|+.+=.-.++.-++ .++|||..=+..++.-.+.+++.|..+ + .. .+++.|.+ .+.|-++.
T Consensus 9 ~~~~h~~~~~~~~~-~l~rn~~~s~~si~~i~i~L~l~g~~~l~~~n~~~~~~~~~~~~ei~vyl~~~~~~~-------- 79 (309)
T PRK11026 9 FNEQVRYAWRGALA-DLKRKPLATLLTVMVIAISLTLPSVCYLVWKNVNQAATQWYPSPQLTVYLDKTLDDD-------- 79 (309)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEECCCCCHH--------
Confidence 33333345677788 999999766654444444444433221 1 11 34566665 44444331
Q ss_pred CCcccchhHHHHhhCCCCc-ccccccCCHHHHHHHhHc
Q psy17040 100 NCSFTHLSCRYLNSLPNDT-IIKDYYPDPESAINAVRV 136 (354)
Q Consensus 100 ~~~~~~~s~~li~~l~~~~-~~~~~~~s~~ea~~~l~~ 136 (354)
..+++.+.+++.+ ..-..+.|+|||.+.+++
T Consensus 80 ------~~~~l~~~L~~~~~V~~v~~vskeeal~~l~~ 111 (309)
T PRK11026 80 ------AANAVVEQLKAEDGVEKVNYLSREEALGEFRN 111 (309)
T ss_pred ------HHHHHHHHHhCCCCcceEEEECHHHHHHHHHH
Confidence 3456777787655 334566789999998876
No 40
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=90.57 E-value=0.43 Score=41.30 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhhcChhHH-HHHHHHHHHHHHHHHHHhcC
Q psy17040 34 LFLTISMLVITSSTLFSPRVM-LFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 34 ~~~~i~~~elk~~~~Rdk~~l-~~~il~Pli~~~l~~~~~~~ 74 (354)
+++++.+||+| +.+|||... ++.++.|+++.++++..+..
T Consensus 2 q~~~l~~r~~~-~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~ 42 (210)
T PF01061_consen 2 QIWALLRREFK-RFWRNPFLGLIWSLIFPLLLLLIFGFIFGK 42 (210)
T ss_pred HHHHHHHHHHH-HHHCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999 999999887 99999999999999988865
No 41
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=89.71 E-value=9 Score=34.20 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=49.3
Q ss_pred HHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHHHHHHHH
Q psy17040 255 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM-CGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFV 332 (354)
Q Consensus 255 ~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~-~i~~~i~l~~~~~~f~v~~~g-~~~~~ll~~~~~~l~~~~lG 332 (354)
..+.++-++|.+++.+.-|++.....+.+-++...+. ++...+++..+....++++.. +....++..+...+...++.
T Consensus 52 ~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~ 131 (229)
T PF06182_consen 52 WEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIF 131 (229)
T ss_pred HHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777899999999999999887777666654444 333443444444455666532 33333333333344444555
Q ss_pred HHHHHh
Q psy17040 333 FGRKNI 338 (354)
Q Consensus 333 llis~l 338 (354)
.+++.+
T Consensus 132 ~~~~~l 137 (229)
T PF06182_consen 132 FIIGLL 137 (229)
T ss_pred HHHHHH
Confidence 554443
No 42
>KOG0065|consensus
Probab=87.65 E-value=9.5 Score=42.60 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhh
Q psy17040 273 GVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC-KGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQD 351 (354)
Q Consensus 273 Pv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~-~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~ 351 (354)
=.+++...++-.+.-+...++.+.++.++.++..|... .+..+-.++++++..++++++=-++++++++...|+.+|-+
T Consensus 529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~ 608 (1391)
T KOG0065|consen 529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGI 608 (1391)
T ss_pred ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHH
Confidence 35788999999999999999999999999999999876 46678888888899999999999999999999999988654
No 43
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=86.77 E-value=0.93 Score=41.37 Aligned_cols=38 Identities=11% Similarity=0.019 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhhhcC-hhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 36 LTISMLVITSSTLFS-PRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 36 ~~i~~~elk~~~~Rd-k~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
.++.+||++ +++|+ |..++..++.|++++++++..++.
T Consensus 8 ~~~~~R~~~-~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~ 46 (253)
T TIGR01291 8 AAVWRRNAL-AWKKVAAASVLGNLADPLIYLFGLGVGLGK 46 (253)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577899999 99999 999999999999999999998864
No 44
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=85.58 E-value=23 Score=34.89 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=38.6
Q ss_pred HHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccchhHHHHH
Q psy17040 258 IIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG---VECKGDLLLVI 318 (354)
Q Consensus 258 ~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~---v~~~g~~~~~l 318 (354)
.+|.+++..|.+++.|++|+..+.+.+..+.....++..+.+.......+ -+..++...++
T Consensus 372 ~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v 435 (536)
T COG3559 372 HGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVV 435 (536)
T ss_pred hhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHH
Confidence 34444466899999999999999988887777666655554433333333 23344554444
No 45
>KOG0065|consensus
Probab=85.49 E-value=3.5 Score=45.82 Aligned_cols=79 Identities=6% Similarity=0.006 Sum_probs=65.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhcc
Q psy17040 275 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGNKKQDSY 353 (354)
Q Consensus 275 ~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~~g-~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~~~~~~~ 353 (354)
+...++++.++.=+...++|+.++.++.++-.|.++.. ..++.++..+++.+....+|+++.++++|.+.|+.+.-+-|
T Consensus 1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 77889999999999999999999888777777877643 35566667778888899999999999999999998765433
No 46
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=83.38 E-value=1 Score=40.43 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 41 LVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 41 ~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
||+| +.+|||..++..++.|+++.++++..++.
T Consensus 1 re~~-~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~ 33 (236)
T TIGR01247 1 RELK-RFIRSRSRIVGSILNPLLWLIFFGKGWSG 33 (236)
T ss_pred CchH-HHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6899 99999999999999999999999987764
No 47
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=83.29 E-value=1.3 Score=38.97 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy17040 32 IVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPT 77 (354)
Q Consensus 32 ~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~~~~ 77 (354)
|+.++.+++||+| --+|.|..+...+++-+..+.+|++.++.|++
T Consensus 1 m~~~~~l~~rdLr-l~~R~~~~~~~~l~F~l~Vi~lfp~~vGpd~~ 45 (221)
T COG2386 1 MMAFLALFKRDLR-LEFRAKAGILNPLLFFLLVITLFPLAVGPDPQ 45 (221)
T ss_pred ChhHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHhccccCCchh
Confidence 3567899999999 99999999999999988888888887776554
No 48
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=80.55 E-value=44 Score=33.36 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=33.3
Q ss_pred HhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 262 MEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG 307 (354)
Q Consensus 262 ~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~ 307 (354)
|.+.++-+.+-|+++.+++.+|++...++-..-...+++......+
T Consensus 317 E~~~~~~l~sLPi~~~~~v~sKil~~~~i~~~l~~~i~i~~~~~~~ 362 (449)
T PF09847_consen 317 EGEGFEFLRSLPIKKREFVRSKILIPSIIPSALSLIIVIVSSIYNG 362 (449)
T ss_pred hhhcchhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455788899999999999999999988877544444444443333
No 49
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=78.38 E-value=2.7 Score=37.44 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy17040 35 FLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRD 75 (354)
Q Consensus 35 ~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~~ 75 (354)
|+++.+||+| .-+|+|..+..++++-++.+.++.++++.+
T Consensus 1 ~~~l~~kdl~-le~r~~~~~~~~~lf~l~~i~if~~al~~~ 40 (215)
T PF03379_consen 1 FLALFRKDLR-LEFRSKEGLLSMLLFFLLVIVIFSFALGPD 40 (215)
T ss_pred CHHHHHHHHH-HHHccccchHHHHHHHHHHHHHHHhhcCCc
Confidence 4689999999 999999999999998888888888877653
No 50
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=77.09 E-value=8.8 Score=35.34 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 22 YLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
+-=|..+.+...-.+.+.+||+|.+..++....+|.++-|++.+.++.+.++.
T Consensus 8 ~~~~~~~~~~~~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~ 60 (264)
T PRK15176 8 SYYFMKLITVCELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQY 60 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888899999999777788899999999999999999888763
No 51
>PRK07377 hypothetical protein; Provisional
Probab=75.91 E-value=18 Score=31.18 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=27.0
Q ss_pred hCCCCc--ccccccCCHHHHHHHhHcCCeEEEEEeCcC
Q psy17040 113 SLPNDT--IIKDYYPDPESAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 113 ~l~~~~--~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~ 148 (354)
.+++-+ .....|.|.++.++++.+|++|++..-+.+
T Consensus 102 ~~~~y~~rlElv~y~~~~~l~~aL~~~eVh~~c~~~~~ 139 (184)
T PRK07377 102 ILDKYHLRLELVVYPDLQALEQALRDKEVHAICLESGS 139 (184)
T ss_pred HHHHhCceeeEEecCCHHHHHHHHhcCCccEEecCCCC
Confidence 344444 346788999999999999999988664444
No 52
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=74.65 E-value=8.6 Score=35.45 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 27 STITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 27 ~~~~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
+..+-......+.++|+|.|..|+....+|.++-|++.+.++++.++.
T Consensus 12 ~~~~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~ 59 (263)
T COG1682 12 ELLKYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGA 59 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666788999999888888899999999999999999988863
No 53
>COG1511 Predicted membrane protein [Function unknown]
Probab=70.71 E-value=18 Score=38.74 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCeEEecccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q psy17040 216 IPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQT 295 (354)
Q Consensus 216 ~~v~~~~~~~~~~~~~~~~~~~p~ll~~~l~~~~~~~~~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~ 295 (354)
.|++..+... ++-+++..-+.|....+-+++.+ +....+..++ . ....+.+.+...+++.+....++.+|.
T Consensus 566 ~p~~~~~~~~-~~v~~~g~~~ap~~~~l~l~vg~--l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~i~~~~~q~ 636 (780)
T COG1511 566 NPVELKEKDI-DPVPNYGSGLAPFYTALALWVGA--LLTSLLTTDV-D-----LSDGILNGRVYFFGKNLVFITLGLIQS 636 (780)
T ss_pred Cchhcccccc-ccccccCccccHHHHHHHHHHHH--HHHHHHHhcc-c-----ccccccchHHHHHHhhhHHHHHHHHHH
Confidence 3554443322 23345555567777666666554 3233333333 1 445567889999999999999999999
Q ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Q psy17040 296 ALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVFGRKNIFEWKLYNGN 347 (354)
Q Consensus 296 ~i~l~~~~~~f~v~~~g~~~~~ll~~~~~~l~~~~lGllis~l~k~~~~a~~ 347 (354)
.+......+++++....+++ +.+..+.++++++.+-.+..+++.+...+..
T Consensus 637 ~i~~~~~~~~l~~~~~~~~~-~~~~~i~~s~~f~~ii~~lv~~~g~~g~~i~ 687 (780)
T COG1511 637 LIVTLGLVLLLGVEVKSPLL-LVLFAIFSSVAFMIIIYLLVSLFGNPGKFIA 687 (780)
T ss_pred HHHHhcCeEEEEeccCchhH-HHHHHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence 77766666677877765544 4445555666666555554455545544433
No 54
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=61.84 E-value=91 Score=32.89 Aligned_cols=13 Identities=0% Similarity=0.069 Sum_probs=8.3
Q ss_pred CCceEEEEeCCCC
Q psy17040 77 TGLHLAIVNQEMD 89 (354)
Q Consensus 77 ~~~~vavvd~D~~ 89 (354)
....|++-|.+++
T Consensus 35 ~~~~v~~~~~~~~ 47 (679)
T TIGR01654 35 DKYDVQVFDINEP 47 (679)
T ss_pred cccceEEEecccc
Confidence 3566888776543
No 55
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=59.28 E-value=22 Score=23.91 Aligned_cols=27 Identities=4% Similarity=-0.062 Sum_probs=17.9
Q ss_pred HHHHhhhhhcChhHHHHHHHHHHHHHHH
Q psy17040 40 MLVITSSTLFSPRVMLFIFALPVMQVIL 67 (354)
Q Consensus 40 ~~elk~~~~Rdk~~l~~~il~Pli~~~l 67 (354)
+.-+| +++|||..++.++++-+++++.
T Consensus 6 ~~~~~-~f~~nk~a~~gl~il~~~vl~a 32 (56)
T PF12911_consen 6 KDAWR-RFRRNKLAVIGLIILLILVLLA 32 (56)
T ss_pred HHHHH-HHHhCchHHHHHHHHHHHHHHH
Confidence 34456 8999999888766654444443
No 56
>PRK15066 inner membrane transport permease; Provisional
Probab=56.30 E-value=20 Score=32.56 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhhhcChhH-HHHHHHHHHHHHHHHHHHh
Q psy17040 32 IVLFLTISMLVITSSTLFSPRV-MLFIFALPVMQVILFCLAI 72 (354)
Q Consensus 32 ~~~~~~i~~~elk~~~~Rdk~~-l~~~il~Pli~~~l~~~~~ 72 (354)
+.++.++.+||+| ++.||+.. ++.-++.|+++.++++..+
T Consensus 7 ~~~~~~l~~re~~-~~~r~~~~~ll~pli~~~~~~~vfg~~~ 47 (257)
T PRK15066 7 WIALKTIVRKEIR-RFLRIWVQTLVPPVITMTLYFLIFGNLI 47 (257)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3466789999999 89999754 3334444444444444433
No 57
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=52.37 E-value=25 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.037 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhcChhHHHHHHHHHHHHH
Q psy17040 36 LTISMLVITSSTLFSPRVMLFIFALPVMQV 65 (354)
Q Consensus 36 ~~i~~~elk~~~~Rdk~~l~~~il~Pli~~ 65 (354)
++|+|||+| ..+|+|.......++.++..
T Consensus 2 ~~i~~kEl~-~~f~sp~~yv~~~~~~~~~g 30 (240)
T TIGR03518 2 KAIFKKEFN-SFFSSPIGYLVIAVFLLANG 30 (240)
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 489999999 99999999887777666544
No 58
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=51.41 E-value=74 Score=24.79 Aligned_cols=67 Identities=13% Similarity=-0.026 Sum_probs=45.9
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHHH
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVAR 156 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~~ 156 (354)
.+++..|+-+|.++. .-+++.+.-+..+..+..+.+.+|.-.++-+..+..+-+.+++|++.+.+.
T Consensus 32 gk~~lVI~A~D~s~~--------------~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~ 97 (104)
T PRK05583 32 KKVYLIIISNDISEN--------------SKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKL 97 (104)
T ss_pred CCceEEEEeCCCCHh--------------HHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHH
Confidence 357788888988762 223433332322222344468899999999888888889999999998864
Q ss_pred H
Q psy17040 157 M 157 (354)
Q Consensus 157 ~ 157 (354)
.
T Consensus 98 ~ 98 (104)
T PRK05583 98 W 98 (104)
T ss_pred H
Confidence 3
No 59
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=48.37 E-value=62 Score=27.55 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=27.0
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
+..+.|.+++.+++.+|++|+++.-..-...-+.
T Consensus 135 ~~~~~~~~~~~~~l~~g~~d~~i~~~~~~~~~~~ 168 (225)
T PF00497_consen 135 IVEVDSPEEALEALLSGRIDAFIVDESTAEYLLK 168 (225)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHH
T ss_pred hcccccHHHHHHHHhcCCeeeeeccchhhhhhhh
Confidence 4567899999999999999999987655554444
No 60
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=47.09 E-value=19 Score=32.03 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=32.0
Q ss_pred HHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17040 39 SMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDP 76 (354)
Q Consensus 39 ~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~~~ 76 (354)
++||+| .-+|+|..+...+++-++.+.++.++++.++
T Consensus 2 ~~kDl~-l~~r~~~~~~~~llF~l~vi~lf~la~gp~~ 38 (211)
T TIGR01190 2 IRRDLR-LAFRAGGGILNPLWFFLIVVTLFPFGVGPEL 38 (211)
T ss_pred cHHHHH-HHHcccchHHHHHHHHHHHHHHHHhhcCCcH
Confidence 589999 8999999999999999988888888777643
No 61
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=44.99 E-value=2.5e+02 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHh---ccchhhhhh
Q psy17040 321 TILQGLCGMCFVFGRKNI---FEWKLYNGN 347 (354)
Q Consensus 321 ~~~~~l~~~~lGllis~l---~k~~~~a~~ 347 (354)
.++..+.+.|+|+++|.+ .|+-++...
T Consensus 155 ~ll~~l~~~glglils~l~v~~rDi~~i~~ 184 (264)
T PRK15176 155 MVIAWLLGLSFGYFCDALSERFPLVYKAVP 184 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344566677888876654 566665554
No 62
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=40.44 E-value=66 Score=33.46 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 28 TITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 28 ~~~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
..+|+..+..+.+|.++ ..+|||..+..-++..+++.+++|..+..
T Consensus 336 ~~~~~~q~~~l~~R~~~-~~~R~~~~~~~~~~~~i~~~li~G~~f~~ 381 (617)
T TIGR00955 336 NASWWTQFYALLKRSWL-SVLRDPLLLKVRLIQTMMTAILIGLIYLG 381 (617)
T ss_pred CCCHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34577888899999999 99999999988888888888888887753
No 63
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=40.06 E-value=26 Score=26.49 Aligned_cols=36 Identities=8% Similarity=-0.112 Sum_probs=27.7
Q ss_pred HHHhhCCCCcc-cccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 109 RYLNSLPNDTI-IKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 109 ~li~~l~~~~~-~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+.++..++ .+....|.+++.+.+++.+.|.+++
T Consensus 13 ~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iii 49 (112)
T PF00072_consen 13 LLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIII 49 (112)
T ss_dssp HHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEE
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEE
Confidence 33455665565 6778889999999999999888874
No 64
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.67 E-value=49 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=19.8
Q ss_pred HHHHHhHcCCeEEEEEeCcChHHHH
Q psy17040 129 SAINAVRVGDAWGALYFTDNFTDAL 153 (354)
Q Consensus 129 ea~~~l~~g~v~~~v~IP~~Fs~~l 153 (354)
+..+.+++|++|.+|..|..+++..
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~ 75 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQE 75 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHH
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccc
Confidence 3889999999999999999877644
No 65
>PRK07714 hypothetical protein; Provisional
Probab=37.65 E-value=1.3e+02 Score=23.06 Aligned_cols=65 Identities=6% Similarity=0.054 Sum_probs=42.5
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHHH
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVA 155 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~~ 155 (354)
.+.++.++-+|.++. .-+++.+.-+..+.-...+.+.+|.-.++-....-.+-+.+++|++.+.+
T Consensus 33 g~~~lViiA~D~s~~--------------~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~vai~d~g~a~~l~~ 97 (100)
T PRK07714 33 GKAKLVLLSEDASVN--------------TTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVAVLDEGFAKKLRS 97 (100)
T ss_pred CCceEEEEeCCCCHH--------------HHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEEEeCchhHHHHHH
Confidence 357788899998762 22333332222222234457889999999887666777889999998764
No 66
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=36.47 E-value=79 Score=27.88 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=21.3
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEe
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYF 145 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~I 145 (354)
...+.+.+++.+++.+|++|+++.=
T Consensus 156 ~~~~~s~~~~~~~L~~g~vD~~v~~ 180 (250)
T TIGR01096 156 IVEYDSYDNANMDLKAGRIDAVFTD 180 (250)
T ss_pred EEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 4556788999999999999999873
No 67
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=35.77 E-value=2.4e+02 Score=22.92 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---c--------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 276 PLEILFSHVITQFVVMCGQTALVLIFMIFVFGVE---C--------KGDLLLVIILTILQGLCGMCFVFGRKNIF 339 (354)
Q Consensus 276 ~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~---~--------~g~~~~~ll~~~~~~l~~~~lGllis~l~ 339 (354)
..++.++-++..+.-| +++..++..+|+.- | --.+|.++.-.+.|.+-+++.|++++.+.
T Consensus 36 ~~~~Y~~LfiVFl~AG----~vLw~vM~~iFd~CIDsWkAdpeLnn~rymWNilMYaIPy~L~Ala~GFlv~~~~ 106 (141)
T PRK13743 36 VSDIYFDLFIVFLTAG----IVLWVIMHSIFDACIDSWKADPELNNFRYMWNILMYVIPYTLWALAAGFLVAGVR 106 (141)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHHHHHHHHHHHhchhhhhhh
Confidence 3445555444333333 33344566677641 2 12247788888899999999999988764
No 68
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=35.35 E-value=1.6e+02 Score=21.25 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcChhHHHHHHHHHHHHHHHHHH
Q psy17040 27 STITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCL 70 (354)
Q Consensus 27 ~~~~~~~~~~~i~~~elk~~~~Rdk~~l~~~il~Pli~~~l~~~ 70 (354)
.+-+++..|+.-.++|+|+-.|=+|+-+.-..+.-++.+.+++.
T Consensus 15 ~~~k~~~~f~~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~ 58 (73)
T COG0690 15 KKGKKFFNFFKEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSL 58 (73)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888899999988898888887666666666665543
No 69
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=34.79 E-value=1.2e+02 Score=27.89 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=34.7
Q ss_pred CCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-c-cc--ccccCCHHHHHHHhHcCCeEEEEEeC
Q psy17040 75 DPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-T-II--KDYYPDPESAINAVRVGDAWGALYFT 146 (354)
Q Consensus 75 ~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~-~~--~~~~~s~~ea~~~l~~g~v~~~v~IP 146 (354)
....++|+......+. ....+.+.+.+.+. + .. +....+..+..+++++|++|.++.-+
T Consensus 28 ~~~~l~Ig~~~~~~~~-------------~~~~~~la~~~~~~~~~i~v~~~~~~~~~~~~~~l~~G~~D~~~~~~ 90 (320)
T TIGR02122 28 EPTFVTIGTGGTGGVY-------------YPIGGAIAQLINKKSGKLRVRVQSTGGSVENVNLLEAGEADLAIVQS 90 (320)
T ss_pred CCceEEEEeCCCCCCh-------------HHHHHHHHHHHhccCCCeeEEEEeCcchHHHHHHHhCCCCcEEEEcc
Confidence 3456777776654431 11335555666332 3 32 23334556788899999999888753
No 70
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=34.51 E-value=72 Score=20.13 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q psy17040 52 RVMLFIFALPVMQVILFCLAIG 73 (354)
Q Consensus 52 ~~l~~~il~Pli~~~l~~~~~~ 73 (354)
...+..+..|+++.+++|..++
T Consensus 4 Sl~fa~iMVPVvma~ilglIyG 25 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899999999887764
No 71
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=32.34 E-value=2.4e+02 Score=21.99 Aligned_cols=31 Identities=0% Similarity=-0.028 Sum_probs=18.2
Q ss_pred ccCCHHHHH---HHhHcCCeEEEEEeCcChHHHHH
Q psy17040 123 YYPDPESAI---NAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 123 ~~~s~~ea~---~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
...+.++++ +.+.+++ .|+|++-+...+.+.
T Consensus 27 ~~~~~e~~~~~~~~l~~~~-~gII~iTE~~a~~i~ 60 (104)
T PRK01189 27 EAEGKDLVKKFLEIFNNPK-CKYIFVSESTKNMFD 60 (104)
T ss_pred EcCCHHHHHHHHHHHhcCC-eEEEEEEHHHHhhCC
Confidence 334445443 3444555 788888887665554
No 72
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=30.87 E-value=1.1e+02 Score=26.31 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q psy17040 50 SPRVMLFIFALPVMQVILF 68 (354)
Q Consensus 50 dk~~l~~~il~Pli~~~l~ 68 (354)
.|....+++++|+++.+++
T Consensus 72 ~~~~~y~l~~iPll~g~l~ 90 (182)
T PF09323_consen 72 KKLWSYFLFLIPLLIGFLF 90 (182)
T ss_pred cccHHHHHHHHHHHHHHcC
Confidence 3556678889999888775
No 73
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=30.63 E-value=52 Score=29.52 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=36.5
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+|.+|+.|.. .+..+...|+..++.+....+-++|.+.++++ +|.++.
T Consensus 2 ~ILiveDd~~----------------i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviL 49 (229)
T COG0745 2 RILLVEDDPE----------------LAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLL 49 (229)
T ss_pred eEEEEcCCHH----------------HHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEE
Confidence 4667777654 45566677888887777778889999999988 888774
No 74
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=30.43 E-value=55 Score=29.02 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.5
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcC
Q psy17040 47 TLFSPRVMLFIFALPVMQVILFCLAIGR 74 (354)
Q Consensus 47 ~~Rdk~~l~~~il~Pli~~~l~~~~~~~ 74 (354)
++|||..++..+.+|+++.++++..+++
T Consensus 1 ~~r~p~~~~~~~~~p~~~~~~~~~~~~~ 28 (232)
T TIGR00025 1 LLRVGAQIILTMFIPITFMVGLNLLPGG 28 (232)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999998888877765
No 75
>TIGR02527 dot_icm_IcmQ Dot/Icm secretion system protein IcmQ. Members of this protein family are the IcmQ component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation (PubMed:15661013).
Probab=30.25 E-value=1.3e+02 Score=25.64 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=41.2
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHc-----CCeEEEEEeCcC
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRV-----GDAWGALYFTDN 148 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~-----g~v~~~v~IP~~ 148 (354)
.+.+-|+.+..|.+.. +...+++..|.....-.-.|.++++++.+++. ++.+.+|+|++.
T Consensus 63 qqEvyIsLYss~G~nl-------------qsWerilanLprqmisRPIYanE~dvk~~IksKenk~NEAYVaiyI~q~ 127 (182)
T TIGR02527 63 KQEIYVSLYQSDGHDL-------------KQWAKILASLERQMIGRPIYADEADAKAAIKQKENKLNEACVAIAIDQS 127 (182)
T ss_pred CeEEEEEEEecCCcCH-------------HHHHHHHHhChhhhhCCCCcCCHHHHHHHHHhhhccccceEEEEEEchH
Confidence 4456788888877542 13445666665544333457899999999987 678888998874
No 76
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=30.22 E-value=1.1e+02 Score=27.41 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=22.3
Q ss_pred hCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 113 SLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 113 ~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.++..+.....+.+.+++.+++.+|++|+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~griDa~i~ 182 (260)
T PRK15010 151 TWRSKGVDVVAYANQDLVYSDLAAGRLDAALQ 182 (260)
T ss_pred hcccCCceEEecCCHHHHHHHHHcCCccEEEe
Confidence 33333333445678888889999999999764
No 77
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=29.98 E-value=5.5e+02 Score=25.45 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17040 278 EILFSHVITQFVVMCGQTALVLIFMIFVFG 307 (354)
Q Consensus 278 ~il~gkil~~~~v~~i~~~i~l~~~~~~f~ 307 (354)
..+.--+...++.|.+.+++..+.+..+++
T Consensus 353 ~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~ 382 (449)
T TIGR00400 353 KVILREICVSILVGAILASVNFLRIVFFQG 382 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333334444455555544444444444444
No 78
>PRK07283 hypothetical protein; Provisional
Probab=29.59 E-value=1.7e+02 Score=22.40 Aligned_cols=63 Identities=8% Similarity=-0.079 Sum_probs=40.2
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHH
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
.+....++-+|.++. .-+++.+..+..+.-+..+.+.+|.-.++-.. .-.+-+..+||++.+.
T Consensus 33 gk~~lVi~A~Das~~--------------~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk~-~~vvai~d~g~a~~l~ 95 (98)
T PRK07283 33 GQAKLVFLANDAGPN--------------LTKKVTDKSNYYQVEVSTVFSTLELSAAVGKP-RKVLAVTDAGFSKKMR 95 (98)
T ss_pred CCccEEEEeCCCCHH--------------HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCC-ceEEEEeChhHHHHHH
Confidence 356788888988762 23344444333232234455888998988774 3445567889999876
No 79
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=29.41 E-value=5.9e+02 Score=25.47 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=53.3
Q ss_pred HHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy17040 260 ERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG----VECKGDLLLVIILTILQGLCGMCFVFGR 335 (354)
Q Consensus 260 Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~----v~~~g~~~~~ll~~~~~~l~~~~lGlli 335 (354)
|.|.|.-|-+.++|+++..-+.+-++......++..+++- +....++ ++..||..--. ......++..++..+.
T Consensus 109 dEesG~vElirs~~vgrlan~~aa~~~ll~~sil~gai~a-lsLla~~~~~~i~lags~afgv-tl~~tg~~~~avaalf 186 (536)
T COG3559 109 DEESGRVELIRSTVVGRLANLTAALLLLLGASILTGAIGA-LSLLATRYIDDIALAGSVAFGV-TLAATGMVFTAVAALF 186 (536)
T ss_pred ccccChhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccchhHHHHH-HHHHHHHHHHHHHHHH
Confidence 5577899999999999988888888777777777666543 3344553 45556643322 2233445555566666
Q ss_pred HHhccchhhh
Q psy17040 336 KNIFEWKLYN 345 (354)
Q Consensus 336 s~l~k~~~~a 345 (354)
+.+..+....
T Consensus 187 ~qL~~~a~~t 196 (536)
T COG3559 187 AQLSPSARFT 196 (536)
T ss_pred HHhCcccccc
Confidence 6665554433
No 80
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein. Members of this family are the extracellular solute-binding proteins of ABC transporters that closely resemble amino acid transporters. The member from Sinorhizobium meliloti is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes.
Probab=28.70 E-value=1.1e+02 Score=27.89 Aligned_cols=28 Identities=21% Similarity=0.073 Sum_probs=22.8
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcC
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~ 148 (354)
+..+.|.+++.+++.+|++|+++.=..-
T Consensus 169 i~~~~~~~~~i~~L~~grvDa~i~d~~~ 196 (275)
T TIGR02995 169 IIVVPDGQSGLKMVQDGRADAYSLTVLT 196 (275)
T ss_pred EEEeCCHHHHHHHHHcCCCCEEecChHH
Confidence 4566788999999999999998875443
No 81
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=28.53 E-value=4.1e+02 Score=23.36 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=12.4
Q ss_pred ceEEEEEcCchHHHHHHHH
Q psy17040 171 SEIRVWLDMSNQQIGLMLN 189 (354)
Q Consensus 171 ~~i~i~~~~~~~~~~~~~~ 189 (354)
.-+++.+...++..+..+.
T Consensus 119 ~ii~Isv~~~dp~~A~~ia 137 (226)
T TIGR01006 119 RLISISVKDKTPQDASKIA 137 (226)
T ss_pred EEEEEEEeCCCHHHHHHHH
Confidence 4567777777777665433
No 82
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional
Probab=27.93 E-value=1.3e+02 Score=27.05 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.0
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+.+.+++-+++.+|++|+++.
T Consensus 159 ~~~~~~~~~~i~~L~~grvD~~v~ 182 (259)
T PRK15437 159 IVSYQGQDNIYSDLTAGRIDAAFQ 182 (259)
T ss_pred EEecCCHHHHHHHHHcCCccEEEe
Confidence 456678888899999999999875
No 83
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=27.80 E-value=6.2e+02 Score=25.25 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=20.1
Q ss_pred HHh-ChhhHHHhcCCChhHHHHHHHH
Q psy17040 261 RME-GLLDRSWVAGVTPLEILFSHVI 285 (354)
Q Consensus 261 k~~-gtl~rll~sPv~~~~il~gkil 285 (354)
+.. +.+|-++.-|+++.+...+..+
T Consensus 56 ~s~~~~~epL~~LPI~~~~~~ls~~~ 81 (449)
T PF09847_consen 56 FSSIGIFEPLLTLPIKRSTLYLSVLL 81 (449)
T ss_pred HhhhhhhhhhhcCCccchhHHHHHHH
Confidence 344 7889999999999998887554
No 84
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=27.08 E-value=4.5e+02 Score=24.75 Aligned_cols=20 Identities=0% Similarity=-0.122 Sum_probs=14.2
Q ss_pred HHHHHhHcCCeEEEEEeCcC
Q psy17040 129 SAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 129 ea~~~l~~g~v~~~v~IP~~ 148 (354)
.....++.-+-|.++.+..|
T Consensus 81 A~~~G~~~A~gd~vv~~DaD 100 (325)
T PRK10714 81 AIMAGFSHVTGDLIITLDAD 100 (325)
T ss_pred HHHHHHHhCCCCEEEEECCC
Confidence 34456666677888888876
No 85
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT).
Probab=26.90 E-value=1.9e+02 Score=27.59 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=32.3
Q ss_pred HHHHHHHHHhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy17040 254 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC 310 (354)
Q Consensus 254 ~~~i~~Ek~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l~~~~~~f~v~~ 310 (354)
+..+.+-...+.++..+..|+...+ +++..+|..|+.+.....++.++-+.
T Consensus 36 a~~isg~~~~~L~~~a~~~p~~~~~------~~~ipiGI~~aVl~aGllF~~~~~~~ 86 (347)
T PF07854_consen 36 AVTISGFWSLELIEEALKNPVLIYQ------IGGIPIGITQAVLVAGLLFYYFRHKI 86 (347)
T ss_pred HHHHHccccHHHHHHHHhCceeehc------ccCCccchhHHHHHHHHHHHHHHHHH
Confidence 3344444555666777778877665 45677777777776666666666553
No 86
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=26.63 E-value=1.1e+02 Score=28.14 Aligned_cols=60 Identities=8% Similarity=0.041 Sum_probs=37.8
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-c--ccccccCCHHHHHHHhHcCCeEEEEEeCcChHH
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-T--IIKDYYPDPESAINAVRVGDAWGALYFTDNFTD 151 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~--~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~ 151 (354)
++++||+.+-.+.. ......+.+++. + ...+.+.+..+..+++.+|++|+...-...|-+
T Consensus 31 ~~I~IG~~~~~~~~---------------~~~~~~~~l~~~~G~~Vel~~f~~~~~~~~ALa~GdID~~~~qh~~~l~ 93 (271)
T PRK11063 31 NHIKVGVIVGAEQQ---------------VAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLD 93 (271)
T ss_pred CcEEEEeCCCChHH---------------HHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHcCCcceecccCHHHHH
Confidence 45899998754432 222222334333 4 334555677888999999999998766666543
No 87
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=26.58 E-value=64 Score=27.41 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=16.8
Q ss_pred HHHHhhhhhcChhHHHHHHHHHHHHHHH
Q psy17040 40 MLVITSSTLFSPRVMLFIFALPVMQVIL 67 (354)
Q Consensus 40 ~~elk~~~~Rdk~~l~~~il~Pli~~~l 67 (354)
|.|+| +++|+|..++.+++ +++...+
T Consensus 1 K~E~~-k~~~~~~~~~~~~~-~~~~~~~ 26 (232)
T PF12730_consen 1 KAELK-KLFRSKLFWILLII-FLLFLLL 26 (232)
T ss_pred ChHHH-HHHHhHHHHHHHHH-HHHHHHH
Confidence 57999 89999876655544 4333333
No 88
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=25.46 E-value=1.4e+02 Score=17.21 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=20.6
Q ss_pred HHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 109 RYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 109 ~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+.++..+.......+.+++.+.+.++..+.++.
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 50 (55)
T smart00448 15 LLKALLEREGYEVDEATDGEEALELLKEEKPDLILL 50 (55)
T ss_pred HHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 344445444433455566677777776666666544
No 89
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=25.09 E-value=1.4e+02 Score=26.87 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=19.3
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+.+..++.+++.+|++|+++.
T Consensus 176 ~~~~~~~~~~~~~l~~GrvDa~~~ 199 (259)
T PRK11917 176 FSEFPDYPSIKAALDAKRVDAFSV 199 (259)
T ss_pred EEecCCHHHHHHHHHcCCCcEEEe
Confidence 345678888899999999998865
No 90
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=23.14 E-value=48 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHhccccccCccchhhhHHHHH
Q psy17040 9 ILTRGWNLVEPDVYLGFISTIT 30 (354)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (354)
-|++-||--+|+.--|.-.++.
T Consensus 46 pL~kHWN~~~PeaK~~ik~li~ 67 (82)
T PF10835_consen 46 PLAKHWNGTYPEAKEEIKELIE 67 (82)
T ss_pred HHHHhhcccCchHHHHHHHHHH
Confidence 3789999999996666555554
No 91
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion]
Probab=22.57 E-value=91 Score=26.90 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=19.0
Q ss_pred hhhcChhH---HHHHHHHHHHHHHHHHH
Q psy17040 46 STLFSPRV---MLFIFALPVMQVILFCL 70 (354)
Q Consensus 46 ~~~Rdk~~---l~~~il~Pli~~~l~~~ 70 (354)
+++||++. +-+.++.|++++++++.
T Consensus 14 rF~rdr~Ga~AVeFAlvap~ll~l~~g~ 41 (185)
T COG4961 14 RFRRDRRGAAAVEFALVAPPLLLLVFGI 41 (185)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 68899874 45788888888887754
No 92
>PHA01735 hypothetical protein
Probab=22.01 E-value=57 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=27.7
Q ss_pred ccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 103 FTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 103 ~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.-+..++++.+++.. ....|...|.+.+++++++++.+
T Consensus 14 H~~lt~El~~Riksge---ATtaDL~AA~d~Lk~NdItgv~~ 52 (76)
T PHA01735 14 HQLLTNELLSRIKSGE---ATTADLRAACDWLKSNDITGVAV 52 (76)
T ss_pred HHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHCCCceeeC
Confidence 3445667777776553 23347789999999999999765
No 93
>PRK11173 two-component response regulator; Provisional
Probab=21.49 E-value=1.1e+02 Score=26.59 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=34.8
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.+++.|.. ....+.+.++..+..+....+.+++.+.+.+...|.++.
T Consensus 3 ~~~iLiv~dd~~----------------~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvil 53 (237)
T PRK11173 3 TPHILIVEDELV----------------TRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIM 53 (237)
T ss_pred CCeEEEEeCCHH----------------HHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEE
Confidence 346778887754 234455556555554566678888988898888888764
No 94
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=21.46 E-value=7.4e+02 Score=23.89 Aligned_cols=63 Identities=5% Similarity=-0.156 Sum_probs=26.3
Q ss_pred HHHH--HhChhhHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHhcCccchhHHHHHHH
Q psy17040 258 IIER--MEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL-IF---MIFVFGVECKGDLLLVIIL 320 (354)
Q Consensus 258 ~~Ek--~~gtl~rll~sPv~~~~il~gkil~~~~v~~i~~~i~l-~~---~~~~f~v~~~g~~~~~ll~ 320 (354)
..|| |-++++-+=.++-.-...++...+...++|.+-.+++- ++ ....+++|+.-++...+..
T Consensus 284 v~er~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~iG~~~G~~lg~~~~~~~~~~~~~p~~~~~~~~~~~ 352 (380)
T TIGR01185 284 VADHLSEYATLKAIGYTQKYLLGVILQEALLLACLGYLPGWGFAILLYTTARQATLLPVFMSYDRAITV 352 (380)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEecHHHHHHH
Confidence 3454 44555544444433344444444444444333222211 11 1123456766555444433
No 95
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.37 E-value=76 Score=23.59 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=19.8
Q ss_pred CHHHHHHHhHcCCeEEEEEeCcCh
Q psy17040 126 DPESAINAVRVGDAWGALYFTDNF 149 (354)
Q Consensus 126 s~~ea~~~l~~g~v~~~v~IP~~F 149 (354)
......+.+++|++|.+|..|..+
T Consensus 43 ~~~~i~~~i~~g~id~VIn~~~~~ 66 (90)
T smart00851 43 GILAILDLIKNGEIDLVINTLYPL 66 (90)
T ss_pred CCHHHHHHhcCCCeEEEEECCCcC
Confidence 345688999999999999999753
No 96
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=20.32 E-value=1.5e+02 Score=25.66 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=34.9
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.+++.|.. ....+.+.++..++.+....+.+++.+.+.+++.|.+++
T Consensus 5 ~~~iLiv~d~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvil 55 (239)
T PRK09468 5 NYKILVVDDDMR----------------LRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVL 55 (239)
T ss_pred CCeEEEEcCCHH----------------HHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 456888888753 233444556555554556678889988898888988775
No 97
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=20.16 E-value=1.3e+02 Score=25.67 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.++-+++.|.. ....+.+.++..+..+....+.+++.+.+.++..|.++.
T Consensus 3 ~~iLlv~d~~~----------------~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvil 52 (221)
T PRK10766 3 YHILVVEDEPV----------------TRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILL 52 (221)
T ss_pred CEEEEEeCCHH----------------HHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 45777887753 233444556555544566678889988888888888775
Done!