Query psy17040
Match_columns 354
No_of_seqs 141 out of 1621
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:16:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cni_A Putative ABC type-2 tra 99.6 3.6E-15 1.2E-19 125.6 8.3 143 73-246 5-153 (156)
2 2p0s_A ABC transporter, permea 96.4 0.011 3.8E-07 47.9 8.1 80 80-196 11-94 (143)
3 2qr3_A Two-component system re 70.8 5.8 0.0002 30.2 4.9 51 78-144 3-53 (140)
4 3hv2_A Response regulator/HD d 67.5 5.7 0.00019 31.0 4.3 53 76-144 12-64 (153)
5 3cg4_A Response regulator rece 67.4 4.4 0.00015 31.0 3.6 53 76-144 5-57 (142)
6 3gt7_A Sensor protein; structu 66.2 4.1 0.00014 32.0 3.2 52 77-144 6-57 (154)
7 2pln_A HP1043, response regula 65.3 6.8 0.00023 29.8 4.3 56 76-148 16-71 (137)
8 3eod_A Protein HNR; response r 64.5 4.8 0.00016 30.3 3.2 52 77-144 6-57 (130)
9 3i42_A Response regulator rece 63.9 3.7 0.00013 30.8 2.5 51 78-144 3-53 (127)
10 3hdg_A Uncharacterized protein 63.6 3.6 0.00012 31.4 2.3 52 77-144 6-57 (137)
11 3fkq_A NTRC-like two-domain pr 63.2 4 0.00014 38.0 3.0 55 77-147 20-77 (373)
12 3grc_A Sensor protein, kinase; 62.5 4.6 0.00016 30.9 2.8 52 77-144 5-56 (140)
13 3lte_A Response regulator; str 62.2 4.2 0.00014 30.7 2.5 52 77-144 5-56 (132)
14 2rjn_A Response regulator rece 62.0 6.4 0.00022 30.7 3.6 53 76-144 5-57 (154)
15 3kto_A Response regulator rece 62.0 4.6 0.00016 30.9 2.7 51 78-144 6-56 (136)
16 2lpm_A Two-component response 60.7 7.2 0.00025 30.2 3.6 53 76-144 6-59 (123)
17 2qxy_A Response regulator; reg 60.3 6.6 0.00023 30.0 3.4 51 78-144 4-54 (142)
18 2rdm_A Response regulator rece 60.0 6.3 0.00021 29.6 3.1 52 77-144 4-56 (132)
19 3hdv_A Response regulator; PSI 59.9 7.1 0.00024 29.5 3.5 53 76-144 5-58 (136)
20 3t6k_A Response regulator rece 57.4 6.3 0.00021 30.2 2.7 51 78-144 4-54 (136)
21 3m6m_D Sensory/regulatory prot 56.9 6.7 0.00023 30.3 2.9 52 77-144 13-64 (143)
22 3f6p_A Transcriptional regulat 55.6 7.5 0.00026 28.9 2.8 50 79-144 3-52 (120)
23 3cfy_A Putative LUXO repressor 55.2 14 0.00048 28.1 4.5 49 80-144 6-54 (137)
24 3nhm_A Response regulator; pro 55.0 10 0.00035 28.4 3.6 50 78-144 4-53 (133)
25 1xhf_A DYE resistance, aerobic 54.7 9.5 0.00033 28.1 3.3 51 78-144 3-53 (123)
26 3kht_A Response regulator; PSI 54.6 6.8 0.00023 30.1 2.5 52 77-144 4-57 (144)
27 2zay_A Response regulator rece 54.3 5.4 0.00019 30.7 1.9 52 77-144 7-58 (147)
28 1k68_A Phytochrome response re 53.1 11 0.00037 28.3 3.5 51 78-144 2-61 (140)
29 3h5i_A Response regulator/sens 52.3 8.5 0.00029 29.4 2.7 52 77-144 4-56 (140)
30 2b4a_A BH3024; flavodoxin-like 51.8 7.6 0.00026 29.5 2.4 52 77-144 14-66 (138)
31 1dbw_A Transcriptional regulat 51.0 14 0.00047 27.5 3.7 51 78-144 3-53 (126)
32 2j48_A Two-component sensor ki 50.8 7.2 0.00025 28.2 2.0 50 79-144 2-51 (119)
33 4e7p_A Response regulator; DNA 50.7 9.9 0.00034 29.4 2.9 52 77-144 19-72 (150)
34 3gl9_A Response regulator; bet 50.7 7.6 0.00026 29.0 2.2 49 80-144 4-52 (122)
35 3cnb_A DNA-binding response re 50.4 9 0.00031 29.1 2.6 52 77-144 7-60 (143)
36 3cz5_A Two-component response 50.4 15 0.00051 28.4 4.0 52 77-144 4-57 (153)
37 3lua_A Response regulator rece 50.4 6.9 0.00024 29.9 1.9 51 78-144 4-56 (140)
38 3jte_A Response regulator rece 49.4 11 0.00038 28.7 3.0 51 78-144 3-55 (143)
39 2qzj_A Two-component response 49.2 12 0.00042 28.4 3.2 51 78-144 4-54 (136)
40 1p6q_A CHEY2; chemotaxis, sign 48.3 16 0.00055 27.1 3.7 52 77-144 5-57 (129)
41 1dc7_A NTRC, nitrogen regulati 48.0 13 0.00045 27.2 3.2 50 79-144 4-53 (124)
42 2gkg_A Response regulator homo 47.3 6.7 0.00023 29.0 1.3 50 79-144 6-55 (127)
43 3c97_A Signal transduction his 46.5 19 0.00064 27.3 3.9 51 78-144 10-60 (140)
44 2pl1_A Transcriptional regulat 46.2 11 0.00038 27.6 2.5 36 109-144 15-50 (121)
45 3k4u_A Binding component of AB 45.5 71 0.0024 26.4 7.9 34 121-154 139-172 (245)
46 3rqi_A Response regulator prot 45.3 12 0.0004 30.4 2.6 54 78-147 7-63 (184)
47 1qkk_A DCTD, C4-dicarboxylate 45.2 8.8 0.0003 29.9 1.8 51 78-144 3-53 (155)
48 3heb_A Response regulator rece 45.1 17 0.00058 28.0 3.5 51 78-144 4-65 (152)
49 3a10_A Response regulator; pho 44.9 12 0.0004 27.3 2.4 35 110-144 17-51 (116)
50 3ilh_A Two component response 44.5 14 0.00049 28.0 2.9 52 77-144 8-66 (146)
51 1srr_A SPO0F, sporulation resp 44.4 12 0.00043 27.5 2.5 50 79-144 4-53 (124)
52 1jbe_A Chemotaxis protein CHEY 44.3 14 0.00049 27.3 2.9 52 77-144 3-55 (128)
53 1k66_A Phytochrome response re 43.8 15 0.00051 27.9 3.0 52 77-144 5-68 (149)
54 1zgz_A Torcad operon transcrip 43.6 14 0.00047 27.2 2.6 50 79-144 3-52 (122)
55 3to5_A CHEY homolog; alpha(5)b 43.2 11 0.00037 29.6 2.0 55 76-147 10-69 (134)
56 3i6v_A Periplasmic His/Glu/Gln 42.5 1.2E+02 0.0042 24.8 8.9 35 119-153 126-160 (232)
57 3n53_A Response regulator rece 42.4 17 0.00059 27.5 3.1 49 79-144 4-52 (140)
58 3kcn_A Adenylate cyclase homol 42.4 23 0.00079 27.2 3.9 50 78-144 4-54 (151)
59 3kyj_B CHEY6 protein, putative 42.0 26 0.00088 26.7 4.1 53 76-144 11-66 (145)
60 2hqr_A Putative transcriptiona 42.0 23 0.0008 29.4 4.1 39 109-148 15-53 (223)
61 3crn_A Response regulator rece 41.6 15 0.00051 27.6 2.6 50 79-144 4-53 (132)
62 3cg0_A Response regulator rece 41.2 9.9 0.00034 28.8 1.5 53 76-144 7-60 (140)
63 2qvg_A Two component response 40.9 13 0.00043 28.3 2.1 52 77-144 6-65 (143)
64 1lst_A Lysine, arginine, ornit 40.3 27 0.00092 28.9 4.3 29 118-146 134-162 (239)
65 3hzh_A Chemotaxis response reg 40.0 12 0.0004 29.4 1.8 51 78-144 36-89 (157)
66 3c3m_A Response regulator rece 39.7 16 0.00054 27.7 2.5 50 79-144 4-53 (138)
67 1yio_A Response regulatory pro 39.4 22 0.00075 29.1 3.5 51 78-144 4-54 (208)
68 3f6c_A Positive transcription 39.0 8 0.00027 29.1 0.6 50 79-144 2-52 (134)
69 3snk_A Response regulator CHEY 38.9 5.2 0.00018 30.4 -0.5 52 77-144 13-65 (135)
70 4dz1_A DALS D-alanine transpor 37.3 30 0.001 29.3 4.2 29 120-148 166-194 (259)
71 1mb3_A Cell division response 37.1 15 0.00053 26.9 2.0 49 80-144 3-51 (124)
72 3q9s_A DNA-binding response re 36.6 22 0.00076 30.5 3.2 51 78-144 37-87 (249)
73 2a9o_A Response regulator; ess 36.3 15 0.0005 26.8 1.7 35 110-144 17-51 (120)
74 3eqz_A Response regulator; str 36.0 19 0.00064 26.8 2.3 50 78-144 3-52 (135)
75 3r0j_A Possible two component 35.8 17 0.0006 31.0 2.3 52 77-144 22-73 (250)
76 1zh2_A KDP operon transcriptio 35.1 20 0.0007 26.0 2.4 36 109-144 16-51 (121)
77 1mvo_A PHOP response regulator 34.5 17 0.00059 27.2 1.9 50 79-144 4-53 (136)
78 4i62_A Amino acid ABC transpor 34.5 1.2E+02 0.0042 25.1 7.7 34 121-154 174-207 (269)
79 3kzg_A Arginine 3RD transport 34.5 54 0.0019 27.0 5.3 42 107-150 122-163 (237)
80 2qsj_A DNA-binding response re 34.4 18 0.00062 27.9 2.0 51 78-144 3-56 (154)
81 2jba_A Phosphate regulon trans 33.9 15 0.00051 27.1 1.4 50 79-144 3-52 (127)
82 2jk1_A HUPR, hydrogenase trans 33.4 48 0.0017 24.8 4.4 48 80-144 3-50 (139)
83 1ys7_A Transcriptional regulat 33.2 23 0.00077 29.6 2.6 52 77-144 6-57 (233)
84 3eul_A Possible nitrate/nitrit 32.9 15 0.00051 28.4 1.3 53 76-144 13-67 (152)
85 1tmy_A CHEY protein, TMY; chem 32.0 21 0.0007 26.0 1.9 50 79-144 3-53 (120)
86 3t8y_A CHEB, chemotaxis respon 31.4 24 0.00084 27.7 2.4 53 76-144 23-77 (164)
87 3mpk_A Virulence sensor protei 30.7 60 0.002 27.6 5.0 33 121-153 163-195 (267)
88 1dcf_A ETR1 protein; beta-alph 30.3 26 0.0009 26.2 2.3 51 77-144 6-56 (136)
89 3mm4_A Histidine kinase homolo 30.2 23 0.00077 29.4 2.1 52 77-144 60-125 (206)
90 2cr7_A Paired amphipathic heli 29.3 65 0.0022 22.7 4.1 47 6-55 17-66 (80)
91 3tql_A Arginine-binding protei 29.2 40 0.0014 27.3 3.4 34 120-153 133-166 (227)
92 3kbr_A Cyclohexadienyl dehydra 28.8 1.3E+02 0.0044 24.5 6.8 29 121-149 149-177 (239)
93 3h7m_A Sensor protein; histidi 27.8 1.1E+02 0.0037 24.7 6.0 31 120-150 140-170 (234)
94 2qv0_A Protein MRKE; structura 27.7 27 0.00093 26.3 2.0 52 77-144 8-61 (143)
95 1kgs_A DRRD, DNA binding respo 27.5 31 0.0011 28.5 2.5 50 79-144 3-52 (225)
96 4f3p_A Glutamine-binding perip 25.4 67 0.0023 26.7 4.3 33 121-153 154-186 (249)
97 2oqr_A Sensory transduction pr 25.3 30 0.001 28.8 2.0 50 79-144 5-54 (230)
98 1dz3_A Stage 0 sporulation pro 25.0 36 0.0012 25.1 2.2 50 79-144 3-54 (130)
99 4eq9_A ABC transporter substra 24.9 1.5E+02 0.0051 24.1 6.4 30 125-154 149-178 (246)
100 1g1e_B SIN3A; four-helix bundl 24.8 1.1E+02 0.0037 22.0 4.7 48 5-55 16-79 (89)
101 2ayx_A Sensor kinase protein R 24.5 35 0.0012 29.3 2.3 51 78-144 129-179 (254)
102 2q88_A EHUB, putative ABC tran 24.2 86 0.0029 26.0 4.8 32 120-151 148-179 (257)
103 3b2n_A Uncharacterized protein 24.0 25 0.00086 26.3 1.1 25 120-144 31-55 (133)
104 2r25_B Osmosensing histidine p 23.5 46 0.0016 24.8 2.6 51 78-144 2-58 (133)
105 1i3c_A Response regulator RCP1 23.3 63 0.0022 24.5 3.4 52 77-144 7-67 (149)
106 3del_B Arginine binding protei 23.2 90 0.0031 25.6 4.7 30 120-149 140-169 (242)
107 1s8n_A Putative antiterminator 23.2 39 0.0013 27.6 2.2 51 78-144 13-64 (205)
108 3h1g_A Chemotaxis protein CHEY 23.1 45 0.0016 24.6 2.5 51 78-144 5-57 (129)
109 3luf_A Two-component system re 22.8 75 0.0026 27.3 4.1 55 77-147 123-181 (259)
110 4h5g_A Amino acid ABC superfam 22.4 80 0.0027 26.3 4.2 24 121-144 147-170 (243)
111 1e91_A Paired amphipathic heli 21.9 1E+02 0.0034 22.0 3.9 47 6-55 14-73 (85)
112 2gwr_A DNA-binding response re 21.6 40 0.0014 28.3 2.0 51 78-144 5-55 (238)
113 2y7i_A STM4351; arginine-bindi 21.4 1.1E+02 0.0037 24.7 4.8 30 121-150 136-165 (229)
114 1ii5_A SLR1257 protein; membra 21.2 1.2E+02 0.0041 24.4 5.1 31 120-150 137-167 (233)
115 2czy_A Paired amphipathic heli 20.4 85 0.0029 21.9 3.2 47 6-55 11-60 (77)
116 2f05_A Paired amphipathic heli 20.0 1.5E+02 0.0051 22.1 4.7 48 5-55 13-73 (105)
No 1
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=99.57 E-value=3.6e-15 Score=125.58 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=94.8
Q ss_pred cCCCCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccc-cccCCHHHHHHHhHcCCeEEEEEeCcChHH
Q psy17040 73 GRDPTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIK-DYYPDPESAINAVRVGDAWGALYFTDNFTD 151 (354)
Q Consensus 73 ~~~~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~-~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~ 151 (354)
+.+++++|+||||+|+++ +|+++++.++ -.... .+..+++|+++++++|+++++|+||+||++
T Consensus 5 ~~~~~~~~vaVvd~D~s~---------------~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~~~~~l~IP~~Fs~ 68 (156)
T 3cni_A 5 EKSTVGQKVAIVREDTGT---------------IAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQ 68 (156)
T ss_dssp ------CEEEEEECCCSH---------------HHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHTCSEEEEECTTHHH
T ss_pred cCCCCCCcEEEEECCCCH---------------HHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCCeeEEEEECcchHH
Confidence 346788999999999987 7899999886 22111 123689999999999999999999999999
Q ss_pred HHHHHHhhCCCCCccccccceEEEE--EcCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccCCCeEEeccccc
Q psy17040 152 ALVARMVLGRDADEETLDQSEIRVW--LDMS---NQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYG 226 (354)
Q Consensus 152 ~l~~~~~~g~~~~~~~~~~~~i~i~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 226 (354)
++.+ |++ ++++++ .|++ +...+..++++++.+........... +..++....|+++++..+.
T Consensus 69 ~l~~----g~~--------~~i~v~~~~d~~~~~~~~~~~~~~~y~~~i~~~~~~~~~~~-~~~~~~~~~Pi~~~~~~~~ 135 (156)
T 3cni_A 69 SLES----GEK--------ARLEIVWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLND-PKKAQLLFDPLEIVQHTYL 135 (156)
T ss_dssp HHHH----TCC--------EEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHTTGGGGSSC-STTSGGGTCCEEEEEEEEE
T ss_pred HHhC----CCC--------CeEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHhCCeeeeEEEEE
Confidence 9984 774 789986 7877 66666666666655432211111111 3334445578988776664
Q ss_pred CCCCChhHHHHHHHHHHHHH
Q psy17040 227 SNDPSFTDFVAPGVILTIVF 246 (354)
Q Consensus 227 ~~~~~~~~~~~p~ll~~~l~ 246 (354)
+++. |.+ +.|+++..+++
T Consensus 136 ~~~~-~~~-~~p~~i~~~~~ 153 (156)
T 3cni_A 136 RGSL-FKN-HSPEAIMNVFY 153 (156)
T ss_dssp TTEE-ETT-CCHHHHHHHHT
T ss_pred cCce-ecc-CCHHHHHHHHh
Confidence 3322 477 88997665543
No 2
>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative ABC transporter, porphyromonas gingiVal structural genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP: c.94.1.3
Probab=96.41 E-value=0.011 Score=47.92 Aligned_cols=80 Identities=8% Similarity=0.031 Sum_probs=50.5
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc-c-cccccCCHHHHHHHhH-cCCeEEEEEeCcChHHHHHHH
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT-I-IKDYYPDPESAINAVR-VGDAWGALYFTDNFTDALVAR 156 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~-~-~~~~~~s~~ea~~~l~-~g~v~~~v~IP~~Fs~~l~~~ 156 (354)
+|||||+++.- .+.++.+. . ......++++|+++++ ++++|++++||++..
T Consensus 11 ~IaVVd~sg~~--------------------~~~~~~~~~~~~~~~~~~~~~ak~~l~~~~~i~g~L~I~~~~~------ 64 (143)
T 2p0s_A 11 TIAIADRTGEY--------------------EQLFKENDEFRFVHAEKTAEEYRKMGADKSGIDAVLEIRQDLL------ 64 (143)
T ss_dssp EEEEEETTSSS--------------------GGGGTTCSSSEEEECSSCHHHHHHHHHHHHCCSEEEEECSCTT------
T ss_pred eEEEECCCccH--------------------HHHhcCCCceEEEecCCCHHHHHHHhhccCceeEEEEECcccc------
Confidence 89999997531 22444433 2 2225567899999999 999999999997621
Q ss_pred HhhCCCCCccccccceEEEEEcCc-hHHHHHHHHHHHHHHH
Q psy17040 157 MVLGRDADEETLDQSEIRVWLDMS-NQQIGLMLNRDLQLSY 196 (354)
Q Consensus 157 ~~~g~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~l~~~~ 196 (354)
++ .+.++.|.+.. +......+++.+++..
T Consensus 65 --~~---------~~~~~~ys~~~~~~~~~~~l~~~L~~~~ 94 (143)
T 2p0s_A 65 --ED---------PNAVAIYGYKQLPASVSNHISRILSDYL 94 (143)
T ss_dssp --TC---------TTSEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred --cC---------CceEEEEEcCCCCHhHHHHHHHHHHHHH
Confidence 12 14677776643 3333334555555544
No 3
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=70.75 E-value=5.8 Score=30.17 Aligned_cols=51 Identities=16% Similarity=-0.016 Sum_probs=37.3
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|.|+|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.+++
T Consensus 3 ~~~ilivdd~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 53 (140)
T 2qr3_A 3 LGTIIIVDDNKG----------------VLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLL 53 (140)
T ss_dssp CCEEEEECSCHH----------------HHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEE
T ss_pred CceEEEEeCCHH----------------HHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEE
Confidence 357888888753 234455566666655667789999999999999988875
No 4
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=67.52 E-value=5.7 Score=31.04 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=39.5
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
....+|.|+|.|.. ....+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 12 ~~~~~ILivdd~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 64 (153)
T 3hv2_A 12 TRRPEILLVDSQEV----------------ILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVIS 64 (153)
T ss_dssp CSCCEEEEECSCHH----------------HHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred cCCceEEEECCCHH----------------HHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEE
Confidence 34578999988764 233445566666666667789999999999999998875
No 5
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=67.37 E-value=4.4 Score=30.99 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=37.0
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+.+|-++|.|... ...+.+.|+..++.+....+.+++.+.+++++.|.+++
T Consensus 5 ~~~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 57 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHV----------------RIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLL 57 (142)
T ss_dssp -CCCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEE
T ss_pred CCCCeEEEEcCCHHH----------------HHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 346778889887532 23344455544555667789999999999999988775
No 6
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=66.21 E-value=4.1 Score=32.02 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=37.4
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
++.+|.|+|.|... ...+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 6 ~~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~ 57 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ----------------AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIIS 57 (154)
T ss_dssp -CCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEE
T ss_pred CCCcEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 45678899887642 23444556555655667789999999999999998875
No 7
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=65.34 E-value=6.8 Score=29.77 Aligned_cols=56 Identities=7% Similarity=0.056 Sum_probs=40.1
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcC
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~ 148 (354)
....+|.|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++ .|..
T Consensus 16 ~~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-~~~~ 71 (137)
T 2pln_A 16 RGSMRVLLIEKNSVL----------------GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSDK 71 (137)
T ss_dssp TTCSEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE-ECST
T ss_pred CCCCeEEEEeCCHHH----------------HHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE-EcCc
Confidence 345788899887532 2334444554455566778999999999999999999 8864
No 8
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.50 E-value=4.8 Score=30.32 Aligned_cols=52 Identities=12% Similarity=-0.033 Sum_probs=36.3
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|.++|.|... ...+.+.+++.++.+....+.++|.+.+++.+.|.++.
T Consensus 6 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 57 (130)
T 3eod_A 6 VGKQILIVEDEQVF----------------RSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 (130)
T ss_dssp TTCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEE
T ss_pred CCCeEEEEeCCHHH----------------HHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 45678899887532 23334445555544556778999999999999987775
No 9
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=63.95 E-value=3.7 Score=30.79 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=36.2
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|-|+|.|... ...+.+.+++.++.+....+.++|.+.+++.+.|.++.
T Consensus 3 ~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 53 (127)
T 3i42_A 3 LQQALIVEDYQAA----------------AETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFI 53 (127)
T ss_dssp CEEEEEECSCHHH----------------HHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred cceEEEEcCCHHH----------------HHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEE
Confidence 3567888887532 23344455555655667789999999999999998875
No 10
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=63.62 E-value=3.6 Score=31.40 Aligned_cols=52 Identities=13% Similarity=-0.041 Sum_probs=36.8
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|.|+|.|... .+.+.+.+++.+..+....+.++|.+.+++.+.|.++.
T Consensus 6 ~~~~ilivdd~~~~----------------~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~ 57 (137)
T 3hdg_A 6 VALKILIVEDDTDA----------------REWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIIT 57 (137)
T ss_dssp -CCCEEEECSCHHH----------------HHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred cccEEEEEeCCHHH----------------HHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEE
Confidence 45789999988642 23344455555555667789999999999999988775
No 11
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=63.15 E-value=4 Score=37.99 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=43.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCC---CcccccccCCHHHHHHHhHcCCeEEEEEeCc
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPN---DTIIKDYYPDPESAINAVRVGDAWGALYFTD 147 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~---~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~ 147 (354)
.+++++|.|.|.. +.++|.+++.+ .++.+..+++.|++++.++++++|.+++=++
T Consensus 20 ~~i~l~i~d~d~~----------------Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~~dilli~e~ 77 (373)
T 3fkq_A 20 MKIKVALLDKDKE----------------YLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEED 77 (373)
T ss_dssp CCEEEEEECSCHH----------------HHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETT
T ss_pred ceEEEEEEeCCHH----------------HHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCCCCEEEEcch
Confidence 4688999999964 77888888743 2356778899999999999999998666543
No 12
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=62.47 E-value=4.6 Score=30.85 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=37.1
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|-|+|.|... ...+.+.+++.++.+....+.++|.+.+++.+.|.++.
T Consensus 5 ~~~~iLivdd~~~~----------------~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 56 (140)
T 3grc_A 5 PRPRILICEDDPDI----------------ARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTV 56 (140)
T ss_dssp CCSEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEE
T ss_pred CCCCEEEEcCCHHH----------------HHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEE
Confidence 35678899887642 23334445555555667789999999999999998776
No 13
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=62.22 E-value=4.2 Score=30.65 Aligned_cols=52 Identities=8% Similarity=-0.062 Sum_probs=36.0
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|.|+|.|... ...+.+.+++.++.+....+.+++.+.+++.+.|.++.
T Consensus 5 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 5 QSKRILVVDDDQAM----------------AAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp --CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEE
T ss_pred CCccEEEEECCHHH----------------HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 35678899887642 23334455555555667789999999999999998775
No 14
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=62.02 E-value=6.4 Score=30.69 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=37.8
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.++.+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.+++
T Consensus 5 ~~~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 57 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPI----------------LNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVIS 57 (154)
T ss_dssp CSCCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEE
T ss_pred CCCCeEEEEcCCHHH----------------HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 346788899887542 23344455555555667788999999999999988875
No 15
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=61.97 E-value=4.6 Score=30.86 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.7
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|-|+|.|... ...+.+.|++.++.+....+.++|.+.+++.+.|.++.
T Consensus 6 ~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 56 (136)
T 3kto_A 6 HPIIYLVDHQKDA----------------RAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMII 56 (136)
T ss_dssp -CEEEEECSCHHH----------------HHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEE
T ss_pred CCeEEEEcCCHHH----------------HHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 4678888887532 33444556666665667789999999999999988775
No 16
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=60.68 E-value=7.2 Score=30.18 Aligned_cols=53 Identities=15% Similarity=0.018 Sum_probs=36.7
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccc-cccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIK-DYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~-~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.++.+|-|||.|... ...+.+.|+..++.+ ....|-+||.+.+++++.|.++.
T Consensus 6 ~r~~rILiVdD~~~~----------------~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 6 ERRLRVLVVEDESMI----------------AMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCCCCEEEESSSTTT----------------SHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE
T ss_pred CCCCEEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 456889999987653 122333455555544 35678999999999999998774
No 17
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=60.29 E-value=6.6 Score=30.01 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=36.5
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|-++|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.+++
T Consensus 4 ~~~iLivdd~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~ 54 (142)
T 2qxy_A 4 TPTVMVVDESRI----------------TFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFV 54 (142)
T ss_dssp CCEEEEECSCHH----------------HHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEE
T ss_pred CCeEEEEeCCHH----------------HHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEE
Confidence 457888887753 233444556655555667788999999999999998875
No 18
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=60.02 E-value=6.3 Score=29.59 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcC-CeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVG-DAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g-~v~~~v~ 144 (354)
++.+|.|+|.|... .+.+.+.++..++.+....+.+++.+.+++. +.|.++.
T Consensus 4 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~ 56 (132)
T 2rdm_A 4 EAVTILLADDEAIL----------------LLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVT 56 (132)
T ss_dssp SSCEEEEECSSHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEcCcHHH----------------HHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEE
Confidence 35678888887532 2334445554455455678899999999997 8888775
No 19
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=59.92 E-value=7.1 Score=29.54 Aligned_cols=53 Identities=9% Similarity=-0.139 Sum_probs=34.8
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCC-eEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGD-AWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~-v~~~v~ 144 (354)
....+|.|+|.|... .+.+.+.|++.++.+....+.+++.+.+.+.+ .|.++.
T Consensus 5 ~~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~ 58 (136)
T 3hdv_A 5 AARPLVLVVDDNAVN----------------REALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMIT 58 (136)
T ss_dssp --CCEEEEECSCHHH----------------HHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEE
T ss_pred CCCCeEEEECCCHHH----------------HHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEE
Confidence 345678899987642 23334445544555566778899999888877 887764
No 20
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=57.42 E-value=6.3 Score=30.15 Aligned_cols=51 Identities=12% Similarity=-0.061 Sum_probs=35.4
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-|+|.|... ...+.+.+++.++.+....|.++|.+.+++++.|.++.
T Consensus 4 ~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 54 (136)
T 3t6k_A 4 PHTLLIVDDDDTV----------------AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALIC 54 (136)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 4568888877532 23333445555555667789999999999999998875
No 21
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=56.88 E-value=6.7 Score=30.32 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=34.1
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+..+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++++.|.++.
T Consensus 13 ~~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 64 (143)
T 3m6m_D 13 RSMRMLVADDHEAN----------------RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIV 64 (143)
T ss_dssp --CEEEEECSSHHH----------------HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ccceEEEEeCCHHH----------------HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 45788889887532 22333445555554556778899999999999998875
No 22
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=55.57 E-value=7.5 Score=28.88 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-++|.|... ...+.+.++..++.+....+.++|.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~ 52 (120)
T 3f6p_A 3 KKILVVDDEKPI----------------ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILL 52 (120)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEE
T ss_pred CeEEEEECCHHH----------------HHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEE
Confidence 367788876532 23333445555555566778999999999999998775
No 23
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.24 E-value=14 Score=28.08 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=35.4
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+|-|+|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 6 ~ILivdd~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvll 54 (137)
T 3cfy_A 6 RVLLVEDSTS----------------LAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIIL 54 (137)
T ss_dssp EEEEECSCTT----------------HHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEeCCHH----------------HHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 6888888764 234455567665655566778899999999988988774
No 24
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=54.98 E-value=10 Score=28.39 Aligned_cols=50 Identities=10% Similarity=-0.092 Sum_probs=34.9
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.|+|.|... ...+.+.++ .++.+....+.++|.+.+++.+.|.++.
T Consensus 4 ~~~ilivdd~~~~----------------~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~ 53 (133)
T 3nhm_A 4 KPKVLIVENSWTM----------------RETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLIS 53 (133)
T ss_dssp -CEEEEECSCHHH----------------HHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEcCCHHH----------------HHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 4578888887532 233344455 4455667789999999999999998775
No 25
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=54.68 E-value=9.5 Score=28.14 Aligned_cols=51 Identities=12% Similarity=-0.062 Sum_probs=34.5
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.++|.|... ...+.+.++..++.+....+.+++.+.+++++.|.++.
T Consensus 3 ~~~ilivdd~~~~----------------~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~ 53 (123)
T 1xhf_A 3 TPHILIVEDELVT----------------RNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIM 53 (123)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CceEEEEeCCHHH----------------HHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 3568888876532 23334445554554566778899999999999988764
No 26
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=54.59 E-value=6.8 Score=30.07 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=35.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccc--ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTII--KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~--~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|.|+|.|... ...+.+.|+..+.. +....+.++|.+.+++.+.|.++.
T Consensus 4 ~~~~ILivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~ 57 (144)
T 3kht_A 4 RSKRVLVVEDNPDD----------------IALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIIL 57 (144)
T ss_dssp -CEEEEEECCCHHH----------------HHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEE
T ss_pred CCCEEEEEeCCHHH----------------HHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEE
Confidence 35678889887532 23344455544432 667789999999999999997776
No 27
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=54.30 E-value=5.4 Score=30.72 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=36.8
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|.++|.|... ...+.+.|+..++.+....+.+++.+.+++.+.|.+++
T Consensus 7 ~~~~iLivd~~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~ 58 (147)
T 2zay_A 7 KWWRIMLVDTQLPA----------------LAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIIT 58 (147)
T ss_dssp -CEEEEEECTTGGG----------------GHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEEeCCHHH----------------HHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEE
Confidence 45678899888643 23344455544555667789999999999999998875
No 28
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=53.06 E-value=11 Score=28.31 Aligned_cols=51 Identities=16% Similarity=-0.005 Sum_probs=35.2
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhHc-------CCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVRV-------GDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~~-------g~v~~~v~ 144 (354)
+.+|-|+|.|... ...+.+.++..+. .+....+.+++.+.+++ .+.|.++.
T Consensus 2 ~~~ilivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~ 61 (140)
T 1k68_A 2 HKKIFLVEDNKAD----------------IRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILL 61 (140)
T ss_dssp CCEEEEECCCHHH----------------HHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEE
T ss_pred CCeEEEEeCCHHH----------------HHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEE
Confidence 3568888887532 3344455655553 56777899999999987 67887764
No 29
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=52.29 E-value=8.5 Score=29.42 Aligned_cols=52 Identities=15% Similarity=-0.063 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHc-CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRV-GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~-g~v~~~v~ 144 (354)
++.+|.|+|.|... .+.+.+.|++.++.+....+.++|.+.+++ .+.|.++.
T Consensus 4 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~ 56 (140)
T 3h5i_A 4 KDKKILIVEDSKFQ----------------AKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILM 56 (140)
T ss_dssp --CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEE
T ss_pred CCcEEEEEeCCHHH----------------HHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEE
Confidence 34678889887642 233444555555555667789999999987 67887764
No 30
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=51.75 E-value=7.6 Score=29.53 Aligned_cols=52 Identities=8% Similarity=-0.052 Sum_probs=35.9
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHc-CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRV-GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~-g~v~~~v~ 144 (354)
...+|.++|.|... ...+.+.++..++.+....+.+++.+.+++ .+.|.++.
T Consensus 14 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvil 66 (138)
T 2b4a_A 14 QPFRVTLVEDEPSH----------------ATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIV 66 (138)
T ss_dssp CCCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEE
T ss_pred CCCeEEEECCCHHH----------------HHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEE
Confidence 45678888887532 233344455445556677888999999998 88888775
No 31
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=50.96 E-value=14 Score=27.46 Aligned_cols=51 Identities=10% Similarity=-0.080 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.++|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 3 ~~~ilivdd~~~~----------------~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 53 (126)
T 1dbw_A 3 DYTVHIVDDEEPV----------------RKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVT 53 (126)
T ss_dssp CCEEEEEESSHHH----------------HHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEE
T ss_pred CCEEEEEcCCHHH----------------HHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 4578888887532 23333444444444556678899999999988887764
No 32
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=50.79 E-value=7.2 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=34.0
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-+++.|.. ..+.+.+.++..++.+....+.+++.+.+++.+.|.+++
T Consensus 2 ~~iliv~~~~~----------------~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~ 51 (119)
T 2j48_A 2 GHILLLEEEDE----------------AATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILM 51 (119)
T ss_dssp CEEEEECCCHH----------------HHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCHH----------------HHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEE
Confidence 35777877653 233444555555555566778999999999988887764
No 33
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=50.68 E-value=9.9 Score=29.44 Aligned_cols=52 Identities=8% Similarity=-0.060 Sum_probs=36.3
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc--ccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT--IIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~--~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|.|+|.|... .+.+.+.++..+ ..+....+.++|.+.+++.+.|.++.
T Consensus 19 ~m~~iLivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~ 72 (150)
T 4e7p_A 19 SHMKVLVAEDQSML----------------RDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAIL 72 (150)
T ss_dssp -CEEEEEECSCHHH----------------HHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEE
T ss_pred CccEEEEEcCCHHH----------------HHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEE
Confidence 35678899887532 233444555443 44667789999999999999998775
No 34
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=50.68 E-value=7.6 Score=28.98 Aligned_cols=49 Identities=6% Similarity=-0.136 Sum_probs=33.7
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+|-++|.|... ...+.+.+++.++.+....|.++|.+.+++.+.|.++.
T Consensus 4 ~ILivdd~~~~----------------~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvll 52 (122)
T 3gl9_A 4 KVLLVDDSAVL----------------RKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVL 52 (122)
T ss_dssp EEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEE
T ss_pred eEEEEeCCHHH----------------HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 57778776532 22333445555555667789999999999999998775
No 35
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=50.43 E-value=9 Score=29.08 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=35.9
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCC-Cccc-ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPN-DTII-KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~-~~~~-~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|-|+|.|... ...+.+.|+. .++. +....+.+++.+.+++.+.|.++.
T Consensus 7 ~~~~iLivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~ 60 (143)
T 3cnb_A 7 NDFSILIIEDDKEF----------------ADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVML 60 (143)
T ss_dssp --CEEEEECSCHHH----------------HHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEE
T ss_pred CCceEEEEECCHHH----------------HHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 45678888887542 2334445555 4554 667789999999999999988775
No 36
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=50.40 E-value=15 Score=28.39 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=36.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCC-Cccccc-ccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPN-DTIIKD-YYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~-~~~~~~-~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|-++|.|.. ..+.+.+.+++ .++.+. ...+.+++.+.+++.+.|.++.
T Consensus 4 ~~~~ILivdd~~~----------------~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~ 57 (153)
T 3cz5_A 4 STARIMLVDDHPI----------------VREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVM 57 (153)
T ss_dssp CCEEEEEECSCHH----------------HHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEE
T ss_pred cccEEEEECCcHH----------------HHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 3467888888753 23444556666 455444 6788999999999999988775
No 37
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=50.38 E-value=6.9 Score=29.85 Aligned_cols=51 Identities=2% Similarity=-0.249 Sum_probs=36.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCC-CcccccccCCHHHHHHHhHc-CCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPN-DTIIKDYYPDPESAINAVRV-GDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~-~~~~~~~~~s~~ea~~~l~~-g~v~~~v~ 144 (354)
..+|-|+|.|... ...+.+.|++ .++.+....+.++|.+.+++ .+.|.++.
T Consensus 4 ~~~ilivdd~~~~----------------~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~ 56 (140)
T 3lua_A 4 DGTVLLIDYFEYE----------------REKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIM 56 (140)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEE
T ss_pred CCeEEEEeCCHHH----------------HHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEE
Confidence 4678888887532 2333444555 45556677899999999999 89998875
No 38
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=49.36 E-value=11 Score=28.70 Aligned_cols=51 Identities=6% Similarity=-0.129 Sum_probs=34.7
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhH--cCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVR--VGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~--~g~v~~~v~ 144 (354)
..+|.|+|.|... .+.+.+.++..++.+....+.++|.+.++ +.+.|.++.
T Consensus 3 ~~~ilivdd~~~~----------------~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~ 55 (143)
T 3jte_A 3 LAKILVIDDESTI----------------LQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVIT 55 (143)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEE
T ss_pred CCEEEEEcCCHHH----------------HHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEE
Confidence 3578888887532 23344455555555667778899999998 678888775
No 39
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=49.22 E-value=12 Score=28.39 Aligned_cols=51 Identities=16% Similarity=0.060 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.|+|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~~Ilivdd~~~----------------~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvll 54 (136)
T 2qzj_A 4 QTKILIIDGDKD----------------NCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFL 54 (136)
T ss_dssp CCEEEEECSCHH----------------HHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEE
T ss_pred CCeEEEEcCCHH----------------HHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 457888887753 223344455554544566778899999999999988874
No 40
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=48.31 E-value=16 Score=27.08 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=34.8
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+..+|-++|.|... ...+.+.++..++ .+....+.+++.+.+++++.|.++.
T Consensus 5 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~ 57 (129)
T 1p6q_A 5 EKIKVLIVDDQVTS----------------RLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVIS 57 (129)
T ss_dssp SCCCEEEECSSHHH----------------HHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEE
T ss_pred ccCeEEEEcCCHHH----------------HHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEE
Confidence 34678888887532 2333344544444 4566778899999999998887764
No 41
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=48.04 E-value=13 Score=27.16 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=32.8
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.++|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~ilivdd~~~----------------~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 53 (124)
T 1dc7_A 4 GIVWVVDDDSS----------------IRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLS 53 (124)
T ss_dssp CCCEEECSSSS----------------HHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEE
T ss_pred cEEEEEeCCHH----------------HHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 45777887654 233444556655555566678888999888887776654
No 42
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=47.25 E-value=6.7 Score=29.01 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.++|.|... .+.+.+.+++.++.+....+.+++.+.+++++.|.++.
T Consensus 6 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~ 55 (127)
T 2gkg_A 6 KKILIVESDTAL----------------SATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVL 55 (127)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEEeCCHHH----------------HHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEE
Confidence 468888877532 33444455554555567788999999999999998875
No 43
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=46.54 E-value=19 Score=27.30 Aligned_cols=51 Identities=12% Similarity=-0.100 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-|+|.|.. ....+...++..+..+....+.+++.+.+++.+.|.++.
T Consensus 10 ~~~iLivdd~~~----------------~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvll 60 (140)
T 3c97_A 10 PLSVLIAEDNDI----------------CRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIM 60 (140)
T ss_dssp CCEEEEECCCHH----------------HHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CceEEEEcCCHH----------------HHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEE
Confidence 357888887753 223344456655544556678899999998888887664
No 44
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=46.22 E-value=11 Score=27.57 Aligned_cols=36 Identities=11% Similarity=-0.141 Sum_probs=25.6
Q ss_pred HHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 109 RYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 109 ~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+.++..++.+....+.+++.+.+++++.|.++.
T Consensus 15 ~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~ 50 (121)
T 2pl1_A 15 HLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIV 50 (121)
T ss_dssp HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 333445444444566778899999999999988874
No 45
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=45.47 E-value=71 Score=26.41 Aligned_cols=34 Identities=15% Similarity=0.027 Sum_probs=25.8
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
+..+.+.+++.+++.+|++|+++.-......-+.
T Consensus 139 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~ 172 (245)
T 3k4u_A 139 LKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMA 172 (245)
T ss_dssp EEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHh
Confidence 5566789999999999999998886544443333
No 46
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=45.32 E-value=12 Score=30.41 Aligned_cols=54 Identities=4% Similarity=-0.013 Sum_probs=37.8
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE---eCc
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY---FTD 147 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~---IP~ 147 (354)
+.+|.|||.|... ...+.+.|+..++.+....|.++|.+.+++.+.|.++. .|.
T Consensus 7 ~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~ 63 (184)
T 3rqi_A 7 DKNFLVIDDNEVF----------------AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGN 63 (184)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETT
T ss_pred CCeEEEEcCCHHH----------------HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCC
Confidence 4678888887532 22333445555555677789999999999999998875 465
No 47
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.15 E-value=8.8 Score=29.89 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.+++
T Consensus 3 ~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliil 53 (155)
T 1qkk_A 3 APSVFLIDDDRDL----------------RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVIS 53 (155)
T ss_dssp -CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEE
T ss_pred CCEEEEEeCCHHH----------------HHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 4568888877532 23344455555555667788999999999999988775
No 48
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=45.10 E-value=17 Score=28.01 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=33.8
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhH---------cCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVR---------VGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~---------~g~v~~~v~ 144 (354)
+.+|.|+|.|... ...+.+.++..+. .+....+.++|.+.++ +.+.|.++.
T Consensus 4 ~~~ILivddd~~~----------------~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliil 65 (152)
T 3heb_A 4 SVTIVMIEDDLGH----------------ARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLL 65 (152)
T ss_dssp -CEEEEECCCHHH----------------HHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEE
T ss_pred CceEEEEeCCHHH----------------HHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEE
Confidence 4678889887542 2333445555443 4667788999999995 677887775
No 49
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=44.93 E-value=12 Score=27.28 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=24.8
Q ss_pred HHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 110 YLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 110 li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+.++..++.+....+.+++.+.+++++.|.++.
T Consensus 17 l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 51 (116)
T 3a10_A 17 LKEELQEEGYEIDTAENGEEALKKFFSGNYDLVIL 51 (116)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 33445444555566778899999999998887764
No 50
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=44.54 E-value=14 Score=27.98 Aligned_cols=52 Identities=6% Similarity=-0.173 Sum_probs=36.1
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhHc-----CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVRV-----GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~~-----g~v~~~v~ 144 (354)
+..+|-|+|.|... ...+.+.++..+. .+....+.++|.+.+++ .+.|.++.
T Consensus 8 ~~~~iLivdd~~~~----------------~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~ 66 (146)
T 3ilh_A 8 KIDSVLLIDDDDIV----------------NFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICI 66 (146)
T ss_dssp CEEEEEEECSCHHH----------------HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEE
T ss_pred ccceEEEEeCCHHH----------------HHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEE
Confidence 44678888887532 2333445555554 56677899999999998 88888775
No 51
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=44.36 E-value=12 Score=27.55 Aligned_cols=50 Identities=10% Similarity=-0.003 Sum_probs=33.9
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-|+|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~ilivdd~~~----------------~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 53 (124)
T 1srr_A 4 EKILIVDDQSG----------------IRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLL 53 (124)
T ss_dssp CEEEEECSCHH----------------HHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred ceEEEEeCCHH----------------HHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEE
Confidence 46778887653 223334445555554566778899999999888988775
No 52
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=44.26 E-value=14 Score=27.30 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=33.8
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
++.+|-++|.|... ...+.+.++..++ .+....+.+++.+.+++++.|.++.
T Consensus 3 ~~~~ilivdd~~~~----------------~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~ 55 (128)
T 1jbe_A 3 KELKFLVVDDFSTM----------------RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVIS 55 (128)
T ss_dssp TTCCEEEECSCHHH----------------HHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEE
T ss_pred CccEEEEECCCHHH----------------HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEE
Confidence 35678888876532 2223334443343 3556678899999999999988774
No 53
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=43.82 E-value=15 Score=27.91 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=35.4
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhHc----------CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVRV----------GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~~----------g~v~~~v~ 144 (354)
...+|-++|.|... ...+.+.|+..+. .+....+.++|.+.+++ .+.|.++.
T Consensus 5 ~~~~iLivdd~~~~----------------~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~ 68 (149)
T 1k66_A 5 ATQPLLVVEDSDED----------------FSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL 68 (149)
T ss_dssp TTSCEEEECCCHHH----------------HHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEE
T ss_pred CCccEEEEECCHHH----------------HHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEE
Confidence 45678889887542 2334445555443 46677889999999987 77887774
No 54
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=43.62 E-value=14 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=33.1
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.++|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~~----------------~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 52 (122)
T 1zgz_A 3 HHIVIVEDEPVT----------------QARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILL 52 (122)
T ss_dssp CEEEEECSSHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred cEEEEEECCHHH----------------HHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEE
Confidence 467788776532 23334445444544556678899999999988988774
No 55
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=43.16 E-value=11 Score=29.56 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=38.8
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHh-hCCCCccc-ccccCCHHHHHHHhHcCCeEEEE---EeCc
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLN-SLPNDTII-KDYYPDPESAINAVRVGDAWGAL---YFTD 147 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~-~l~~~~~~-~~~~~s~~ea~~~l~~g~v~~~v---~IP~ 147 (354)
.++.+|-|||.|.. .+++++ .|++.++. +....|-++|.+.++++++|.++ ..|.
T Consensus 10 ~k~~rILiVDD~~~-----------------~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~ 69 (134)
T 3to5_A 10 NKNMKILIVDDFST-----------------MRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPG 69 (134)
T ss_dssp CTTCCEEEECSCHH-----------------HHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSS
T ss_pred CCCCEEEEEeCCHH-----------------HHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 46788999987653 345544 45555543 44567889999999999999887 3565
No 56
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=42.47 E-value=1.2e+02 Score=24.81 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=26.8
Q ss_pred ccccccCCHHHHHHHhHcCCeEEEEEeCcChHHHH
Q psy17040 119 IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDAL 153 (354)
Q Consensus 119 ~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l 153 (354)
..+..+.+.+++.+++.+|++|+++.=......-+
T Consensus 126 ~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~ 160 (232)
T 3i6v_A 126 ATLVEFATPEETIAAVRNGEADAVFADRDYLVPIV 160 (232)
T ss_dssp SEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred CeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHH
Confidence 34566789999999999999999988665544333
No 57
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=42.38 E-value=17 Score=27.46 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-|+|.|... ...+.+.+++. +.+....+.++|.+.+++.+.|.++.
T Consensus 4 ~~iLivdd~~~~----------------~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~ 52 (140)
T 3n53_A 4 KKILIIDQQDFS----------------RIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVIL 52 (140)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEeCCHHH----------------HHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 568888877532 23344455555 55667789999999999999887775
No 58
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=42.38 E-value=23 Score=27.24 Aligned_cols=50 Identities=8% Similarity=0.046 Sum_probs=34.4
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCC-eEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGD-AWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~-v~~~v~ 144 (354)
..+|.|+|.|... ...+.+.++. ++.+....+.++|.+.+++.+ +|.++.
T Consensus 4 ~~~ILivdd~~~~----------------~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~ 54 (151)
T 3kcn_A 4 NERILLVDDDYSL----------------LNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMV 54 (151)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEE
T ss_pred CCeEEEEeCCHHH----------------HHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEE
Confidence 4578888887532 2334445554 455667788999999999886 587775
No 59
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=42.04 E-value=26 Score=26.67 Aligned_cols=53 Identities=8% Similarity=0.006 Sum_probs=35.7
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-ccc-ccccCCHHHHHHHhHcC-CeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-TII-KDYYPDPESAINAVRVG-DAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~~~-~~~~~s~~ea~~~l~~g-~v~~~v~ 144 (354)
..+..|-|+|.|.. ....+.+.+++. ++. +....+.++|.+.+++. +.|.++.
T Consensus 11 ~~~~~vlivdd~~~----------------~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvil 66 (145)
T 3kyj_B 11 GSPYNVMIVDDAAM----------------MRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILL 66 (145)
T ss_dssp CCSEEEEEECSCHH----------------HHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCeEEEEcCCHH----------------HHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEE
Confidence 34566778887653 223344556665 443 34678999999999988 8988775
No 60
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=42.02 E-value=23 Score=29.37 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=29.5
Q ss_pred HHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcC
Q psy17040 109 RYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 109 ~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~ 148 (354)
.+.+.|+..++.+....+.++|.+.+++.+.|.++ .|..
T Consensus 15 ~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi-lp~~ 53 (223)
T 2hqr_A 15 EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM-VSDK 53 (223)
T ss_dssp HHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE-ECCT
T ss_pred HHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE-eCCC
Confidence 34445555555556778999999999999999999 8864
No 61
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=41.56 E-value=15 Score=27.60 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=33.5
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-++|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~Ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 53 (132)
T 3crn_A 4 KRILIVDDDTAI----------------LDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALF 53 (132)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred cEEEEEeCCHHH----------------HHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 467788876532 23333445444444556778899999999999988774
No 62
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=41.15 E-value=9.9 Score=28.76 Aligned_cols=53 Identities=13% Similarity=-0.135 Sum_probs=36.0
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccccc-ccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKD-YYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~-~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
....+|-|++.|... .+.+.+.|+..++.+. ...+.+++.+.+++++.|.+++
T Consensus 7 ~~~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~ 60 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLA----------------AATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALV 60 (140)
T ss_dssp -CCCEEEEECCBHHH----------------HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CCCceEEEEECCHHH----------------HHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEE
Confidence 345788899887542 2333444544454455 4778999999999999988875
No 63
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=40.85 E-value=13 Score=28.29 Aligned_cols=52 Identities=4% Similarity=-0.146 Sum_probs=34.4
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhHc------CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVRV------GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~~------g~v~~~v~ 144 (354)
++.+|-|+|.|... .+.+.+.++..+. .+....+.+++.+.+++ .+.|.+++
T Consensus 6 ~~~~ILivdd~~~~----------------~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~ 65 (143)
T 2qvg_A 6 DKVDILYLEDDEVD----------------IQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILL 65 (143)
T ss_dssp -CCSEEEECCCHHH----------------HHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEE
T ss_pred CCCeEEEEeCCHHH----------------HHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEE
Confidence 45678889887532 2334444544343 46677889999999987 67887775
No 64
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=40.29 E-value=27 Score=28.88 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=23.3
Q ss_pred cccccccCCHHHHHHHhHcCCeEEEEEeC
Q psy17040 118 TIIKDYYPDPESAINAVRVGDAWGALYFT 146 (354)
Q Consensus 118 ~~~~~~~~s~~ea~~~l~~g~v~~~v~IP 146 (354)
+..+..+.+.+++.+++.+|++|+++.=.
T Consensus 134 ~~~~~~~~~~~~~~~~l~~G~vDa~~~~~ 162 (239)
T 1lst_A 134 GVDVVAYANQDLIYSDLTAGRLDAALQDE 162 (239)
T ss_dssp TCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred CCeEEEcCCHHHHHHHHHcCCCCEEEeCc
Confidence 33456677899999999999999988643
No 65
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=40.00 E-value=12 Score=29.36 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=35.0
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccccc-ccCCHHHHHHHhHcC--CeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKD-YYPDPESAINAVRVG--DAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~-~~~s~~ea~~~l~~g--~v~~~v~ 144 (354)
..+|.|+|.|... .+.+.+.|++.++.+. ...+.++|.+.+++. +.|.++.
T Consensus 36 ~~~Ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliil 89 (157)
T 3hzh_A 36 PFNVLIVDDSVFT----------------VKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTL 89 (157)
T ss_dssp ECEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEE
T ss_pred ceEEEEEeCCHHH----------------HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 3678888887532 2333444555554444 678999999999988 8887775
No 66
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=39.67 E-value=16 Score=27.71 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=33.4
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~ 53 (138)
T 3c3m_A 4 YTILVVDDSPMI----------------VDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLL 53 (138)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEeCCHHH----------------HHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEE
Confidence 467788876532 23333445444544556678899999999999988774
No 67
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=39.37 E-value=22 Score=29.11 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~ 54 (208)
T 1yio_A 4 KPTVFVVDDDMSV----------------REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVL 54 (208)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEE
T ss_pred CCEEEEEcCCHHH----------------HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEE
Confidence 4578888877532 23334455555555566778899999999999998774
No 68
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=38.98 E-value=8 Score=29.10 Aligned_cols=50 Identities=16% Similarity=-0.007 Sum_probs=33.9
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccccc-ccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKD-YYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~-~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-++|.|... ...+.+.+++.++.+. ...+.++|.+.+++.+.|.++.
T Consensus 2 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~ 52 (134)
T 3f6c_A 2 LNAIIIDDHPLA----------------IAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVII 52 (134)
T ss_dssp EEEEEECCCHHH----------------HHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEE
T ss_pred eEEEEEcCCHHH----------------HHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEE
Confidence 467788887532 2334445555554444 6678889999999999998775
No 69
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=38.93 E-value=5.2 Score=30.42 Aligned_cols=52 Identities=4% Similarity=-0.111 Sum_probs=36.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc-ccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT-IIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~-~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|-|+|.|... ...+.+.+++.+ +.+....+.++|.+.+++.+.|.++.
T Consensus 13 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~ 65 (135)
T 3snk_A 13 KRKQVALFSSDPNF----------------KRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVIL 65 (135)
T ss_dssp CCEEEEEECSCHHH----------------HHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEE
T ss_pred CCcEEEEEcCCHHH----------------HHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEE
Confidence 34578888887542 233445565555 65667778899999999999998775
No 70
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=37.33 E-value=30 Score=29.35 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=23.7
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcC
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDN 148 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~ 148 (354)
.+..+.+.+++.+++.+|++|+++.=...
T Consensus 166 ~~~~~~~~~~~~~~l~~G~vDa~~~~~~~ 194 (259)
T 4dz1_A 166 KVKLYPTYNETMADLKNGNLDLAFIEEPV 194 (259)
T ss_dssp GCEEESSHHHHHHHHHHTSCSEEEEEHHH
T ss_pred eeEecCCHHHHHHHHHcCCCCEEEecHHH
Confidence 35567789999999999999998876544
No 71
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=37.09 E-value=15 Score=26.90 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=31.9
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+|.++|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 3 ~ilivdd~~~~----------------~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~ 51 (124)
T 1mb3_A 3 KVLIVEDNELN----------------MKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILM 51 (124)
T ss_dssp EEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEEcCCHHH----------------HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 57777776432 23333445444444556678899999998888888774
No 72
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=36.63 E-value=22 Score=30.49 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=36.4
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|.|+|.|... ...+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 37 ~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~Dlvll 87 (249)
T 3q9s_A 37 EQRILVIEDDHDI----------------ANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILL 87 (249)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEECCHHH----------------HHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 4678889887532 23334455555555667788999999999999998875
No 73
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=36.28 E-value=15 Score=26.79 Aligned_cols=35 Identities=3% Similarity=-0.142 Sum_probs=24.3
Q ss_pred HHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 110 YLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 110 li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+.++..++.+....+.+++.+.+++++.|.++.
T Consensus 17 l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~ 51 (120)
T 2a9o_A 17 IKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIIL 51 (120)
T ss_dssp HHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEE
Confidence 33444444444556678899999999888887764
No 74
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=36.03 E-value=19 Score=26.83 Aligned_cols=50 Identities=6% Similarity=-0.156 Sum_probs=33.5
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|-|+|.|... .+.+.+.++..+..+....+.+++.+.+++. .|.++.
T Consensus 3 ~~~ilivdd~~~~----------------~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~dlvi~ 52 (135)
T 3eqz_A 3 LNRVFIVDDDTLT----------------CNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK-QDIIIL 52 (135)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHTTTCSCEEEESCHHHHTTSCCCT-TEEEEE
T ss_pred cceEEEEeCCHHH----------------HHHHHHHHHhhcceeeeecCHHHHHHhhccC-CCEEEE
Confidence 3568888887542 2334445555554466777889998888887 887775
No 75
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=35.76 E-value=17 Score=31.01 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=36.9
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
...+|.|+|.|... ...+.+.|+..++.+....|.++|.+.+++.+.|.++.
T Consensus 22 ~~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvll 73 (250)
T 3r0j_A 22 PEARVLVVDDEANI----------------VELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVIL 73 (250)
T ss_dssp SSCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CCceEEEEECCHHH----------------HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 45789999887532 23333445545555567789999999999999998875
No 76
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=35.13 E-value=20 Score=25.98 Aligned_cols=36 Identities=6% Similarity=-0.151 Sum_probs=24.4
Q ss_pred HHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 109 RYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 109 ~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+.++..++.+....+.+++.+.+.+.+.|.++.
T Consensus 16 ~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~ 51 (121)
T 1zh2_A 16 FLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIIL 51 (121)
T ss_dssp HHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 334445554544556678888888888888888764
No 77
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=34.53 E-value=17 Score=27.18 Aligned_cols=50 Identities=12% Similarity=-0.010 Sum_probs=32.9
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.|+|.|... ...+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 4 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~ 53 (136)
T 1mvo_A 4 KKILVVDDEESI----------------VTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVL 53 (136)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEECCHHH----------------HHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEE
Confidence 467788876532 23333445444444556778899999998888887765
No 78
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=34.48 E-value=1.2e+02 Score=25.11 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=26.3
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChHHHHH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
...+.+.+++.+++.+|++|+++.-......-+.
T Consensus 174 ~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~ 207 (269)
T 4i62_A 174 LVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVE 207 (269)
T ss_dssp EEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHH
Confidence 4566789999999999999999877655444333
No 79
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=34.47 E-value=54 Score=27.01 Aligned_cols=42 Identities=10% Similarity=-0.025 Sum_probs=28.9
Q ss_pred hHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEEeCcChH
Q psy17040 107 SCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFT 150 (354)
Q Consensus 107 s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs 150 (354)
...+.+...+ ..+..+.+.+++.+++.+|++|+++.-.....
T Consensus 122 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~ 163 (237)
T 3kzg_A 122 ARQVLSENRN--NQVIFYELIQDMLLGLSNNQVDASLMDYEAAK 163 (237)
T ss_dssp HHHHHHTCSS--CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred HHHHHHhCCC--CcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHH
Confidence 3444444433 23566778999999999999999887654433
No 80
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=34.36 E-value=18 Score=27.87 Aligned_cols=51 Identities=12% Similarity=-0.103 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-cc-cccccCCHHHHHHHhHc-CCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-TI-IKDYYPDPESAINAVRV-GDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~~-~~~~~~s~~ea~~~l~~-g~v~~~v~ 144 (354)
+.+|-|+|.|... .+.+.+.+++. +. .+....+.+++.+.+++ .+.|.+++
T Consensus 3 ~~~iLivdd~~~~----------------~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~ 56 (154)
T 2qsj_A 3 LTVVLIVDDHHLI----------------RAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILL 56 (154)
T ss_dssp CEEEEEECSCHHH----------------HHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEE
T ss_pred ccEEEEEcCCHHH----------------HHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEE
Confidence 4578888877532 23334445443 33 45667889999999999 88887774
No 81
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=33.93 E-value=15 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.003 Sum_probs=32.8
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.++|.|.. ....+.+.++..++.+....+.+++.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~----------------~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~ 52 (127)
T 2jba_A 3 RRILVVEDEAP----------------IREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILL 52 (127)
T ss_dssp CEEEEECSCHH----------------HHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEE
T ss_pred cEEEEEcCCHH----------------HHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEE
Confidence 35777877653 223333445444544556778899999998888888774
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=33.43 E-value=48 Score=24.78 Aligned_cols=48 Identities=15% Similarity=0.002 Sum_probs=32.0
Q ss_pred eEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 80 HLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 80 ~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+|.|+|.|... ...+...++.. +.+....+.+++.+.+++.+.|.++.
T Consensus 3 ~Ilivdd~~~~----------------~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~ 50 (139)
T 2jk1_A 3 AILLVDDEPHS----------------LAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIIC 50 (139)
T ss_dssp EEEEECSSHHH----------------HHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEE
T ss_pred eEEEEcCCHHH----------------HHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEE
Confidence 57778776432 23334445544 44556678899999999999988774
No 83
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=33.16 E-value=23 Score=29.62 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=35.5
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|.|+|.|... ...+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 6 ~~~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvll 57 (233)
T 1ys7_A 6 TSPRVLVVDDDSDV----------------LASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVL 57 (233)
T ss_dssp -CCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred CCCeEEEEeCCHHH----------------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 35678888887632 23333445444544566778899999999999998875
No 84
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=32.93 E-value=15 Score=28.38 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=36.1
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc-c-cccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT-I-IKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~-~-~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+.+|.|+|.|... ...+.+.+++.+ . .+....+.++|.+.+++.+.|.++.
T Consensus 13 ~~~~~iLivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~ 67 (152)
T 3eul_A 13 PEKVRVVVGDDHPLF----------------REGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALL 67 (152)
T ss_dssp -CCEEEEEECSSHHH----------------HHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CceEEEEEEcCCHHH----------------HHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEE
Confidence 456789899987632 233444454444 2 2446789999999999999998876
No 85
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=31.98 E-value=21 Score=26.03 Aligned_cols=50 Identities=6% Similarity=-0.073 Sum_probs=32.4
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccc-ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTII-KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~-~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.++|.|.. ....+.+.++..++. +....+.+++.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~----------------~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~ 53 (120)
T 1tmy_A 3 KRVLIVDDAAF----------------MRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTM 53 (120)
T ss_dssp CEEEEECSCHH----------------HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred ceEEEEcCcHH----------------HHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEE
Confidence 46778877643 223333445544443 445678899999999888887764
No 86
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=31.35 E-value=24 Score=27.71 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=35.5
Q ss_pred CCCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCc--ccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 76 PTGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDT--IIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 76 ~~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~--~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+..+|.|+|.|... ...+.+.+++.+ ..+....+.++|.+.+++.+.|.++.
T Consensus 23 ~~~~~ILivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvil 77 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFM----------------RMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITM 77 (164)
T ss_dssp -CCEEEEEECSCHHH----------------HHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred cCccEEEEEcCCHHH----------------HHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEE
Confidence 345789999987542 233344454443 23445678999999999999998775
No 87
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=30.66 E-value=60 Score=27.57 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=25.6
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChHHHH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFTDAL 153 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l 153 (354)
+..+.+.+++.+++.+|++|+++.-......-+
T Consensus 163 ~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~ 195 (267)
T 3mpk_A 163 VVTADNPSEAMLMVANGQADAVVQTQISASYYV 195 (267)
T ss_dssp EEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHH
Confidence 556678999999999999999988755443333
No 88
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=30.34 E-value=26 Score=26.21 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=32.0
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+..+|-|+|.|... ...+.+.++..++.+....+.+++.+.+++.. |.++.
T Consensus 6 ~~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-dlvll 56 (136)
T 1dcf_A 6 TGLKVLVMDENGVS----------------RMVTKGLLVHLGCEVTTVSSNEECLRVVSHEH-KVVFM 56 (136)
T ss_dssp TTCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHCCTTC-SEEEE
T ss_pred CCCeEEEEeCCHHH----------------HHHHHHHHHHcCCeEEEeCCHHHHHHHHhccC-CEEEE
Confidence 45678888887532 22233344444444566778899999887776 76653
No 89
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=30.23 E-value=23 Score=29.38 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=35.0
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCCHHHHHHHhHcC-------------CeEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPDPESAINAVRVG-------------DAWGA 142 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s~~ea~~~l~~g-------------~v~~~ 142 (354)
.+.+|-|||.|... ...+.+.|++.++ .+....|.++|.+.++++ +.|.+
T Consensus 60 ~~~~ILiVdDd~~~----------------~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dli 123 (206)
T 3mm4_A 60 RGKRVLVVDDNFIS----------------RKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYI 123 (206)
T ss_dssp TTCEEEEECSCHHH----------------HHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEE
T ss_pred CCCEEEEEeCCHHH----------------HHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEE
Confidence 35678889887542 2223344554454 566778999999999875 78877
Q ss_pred EE
Q psy17040 143 LY 144 (354)
Q Consensus 143 v~ 144 (354)
+.
T Consensus 124 ll 125 (206)
T 3mm4_A 124 FM 125 (206)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 90
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=29.25 E-value=65 Score=22.72 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.0
Q ss_pred hhHHHhccccccCccchhhhHHHHHHHHH---HHHHHHHHHhhhhhcChhHHH
Q psy17040 6 LRSILTRGWNLVEPDVYLGFISTITWIVL---FLTISMLVITSSTLFSPRVML 55 (354)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~elk~~~~Rdk~~l~ 55 (354)
++.+-+|=.+ +|++|--|+-+|+.++. -..-...+++ .+|++.--|+
T Consensus 17 l~~VK~rF~~--~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~-~Lf~~hpdLi 66 (80)
T 2cr7_A 17 LDQVKIRFGS--DPATYNGFLEIMKEFKSQSIDTPGVIRRVS-QLFHEHPDLI 66 (80)
T ss_dssp HHHHHHHTSS--CHHHHHHHHHHHHHHHTTSSCHHHHHHHHH-HHGGGCHHHH
T ss_pred HHHHHHHHcc--ChHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHcCCHHHH
Confidence 4555556555 79999999999998762 1134457888 8999886664
No 91
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=29.15 E-value=40 Score=27.35 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=25.6
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcChHHHH
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDNFTDAL 153 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l 153 (354)
....+.+.+++.+++.+|++|+++.-......-+
T Consensus 133 ~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~ 166 (227)
T 3tql_A 133 TIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWL 166 (227)
T ss_dssp EEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHH
Confidence 3456678999999999999999887655444433
No 92
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=28.76 E-value=1.3e+02 Score=24.50 Aligned_cols=29 Identities=14% Similarity=-0.095 Sum_probs=22.9
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcCh
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNF 149 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~F 149 (354)
+..+.+.+++.+++.+|++|+++.=....
T Consensus 149 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 177 (239)
T 3kbr_A 149 ILVHPDNVTIFQQIVDGKADLMMTDAIEA 177 (239)
T ss_dssp EEECCCTTTHHHHHHTTSCSEEEEEHHHH
T ss_pred eEEeCCHHHHHHHHHcCCcCEEEEchHHH
Confidence 45667888999999999999988654433
No 93
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=27.81 E-value=1.1e+02 Score=24.74 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=24.4
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcChH
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDNFT 150 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs 150 (354)
....+.+.+++.+++.+|++|+++.-.....
T Consensus 140 ~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 140 DLVLTPTPADALRLLAAGGCDYAVVAMVPGM 170 (234)
T ss_dssp GEEEESSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred eEEEeCCHHHHHHHHHcCCceEEEeccHHHH
Confidence 3556778999999999999999887544433
No 94
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=27.72 E-value=27 Score=26.33 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=33.3
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-ccc-ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-TII-KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~~~-~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+.+|-|+|.|... .+.+.+.++.. ++. +....+.+++.+.+++.+.|.+++
T Consensus 8 ~~~~iLivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~ 61 (143)
T 2qv0_A 8 EKMKVIIVEDEFLA----------------QQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFL 61 (143)
T ss_dssp --CEEEEECSCHHH----------------HHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEE
T ss_pred CceEEEEEcCCHHH----------------HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEE
Confidence 45788889887532 22333344432 333 346678899999999999888775
No 95
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=27.53 E-value=31 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=33.9
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.|+|.|... ...+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvll 52 (225)
T 1kgs_A 3 VRVLVVEDERDL----------------ADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVIL 52 (225)
T ss_dssp CEEEEECSSHHH----------------HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEE
Confidence 467888877532 23333445444544556778899999999999998874
No 96
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=25.39 E-value=67 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=25.9
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChHHHH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFTDAL 153 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l 153 (354)
+..+.+.+++.+++.+|++|+++.-......-+
T Consensus 154 ~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~ 186 (249)
T 4f3p_A 154 IRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFV 186 (249)
T ss_dssp EEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHH
Confidence 456678999999999999999988665544433
No 97
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=25.27 E-value=30 Score=28.79 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=34.0
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|.|+|.|... ...+.+.|+..++.+....+.+++.+.+++.+.|.++.
T Consensus 5 ~~ilivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvll 54 (230)
T 2oqr_A 5 TSVLIVEDEESL----------------ADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLL 54 (230)
T ss_dssp CEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEE
T ss_pred CeEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEE
Confidence 568888877532 23333445444544566778899999999888888775
No 98
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=25.04 E-value=36 Score=25.13 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCC-cccc-cccCCHHHHHHHhHcCCeEEEEE
Q psy17040 79 LHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPND-TIIK-DYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 79 ~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~-~~~~-~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+|-++|.|.. ..+.+.+.++.. ++.+ ....+.+++.+.+++.+.|.++.
T Consensus 3 ~~ilivdd~~~----------------~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvll 54 (130)
T 1dz3_A 3 IKVCIADDNRE----------------LVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLL 54 (130)
T ss_dssp EEEEEECSCHH----------------HHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred eEEEEEcCCHH----------------HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEE
Confidence 46777877643 223344455544 4433 35678899999999888888774
No 99
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=24.87 E-value=1.5e+02 Score=24.13 Aligned_cols=30 Identities=7% Similarity=-0.024 Sum_probs=23.8
Q ss_pred CCHHHHHHHhHcCCeEEEEEeCcChHHHHH
Q psy17040 125 PDPESAINAVRVGDAWGALYFTDNFTDALV 154 (354)
Q Consensus 125 ~s~~ea~~~l~~g~v~~~v~IP~~Fs~~l~ 154 (354)
.+.+++.+++.+|++|+++.-......-+.
T Consensus 149 ~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~ 178 (246)
T 4eq9_A 149 ADFQQIMVRLSDGQFDYKIFDKIGVETVIK 178 (246)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCceEEEecHHHHHHHHH
Confidence 588999999999999999887655544443
No 100
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=24.83 E-value=1.1e+02 Score=22.03 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=35.2
Q ss_pred hhhHHHhccccccCccchhhhHHHHHHHHH-HHH---------------HHHHHHhhhhhcChhHHH
Q psy17040 5 SLRSILTRGWNLVEPDVYLGFISTITWIVL-FLT---------------ISMLVITSSTLFSPRVML 55 (354)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------i~~~elk~~~~Rdk~~l~ 55 (354)
-+..|-+|=.+ +|++|--|+-+|++.+. -.. =...+++ .+|++.--|+
T Consensus 16 YvnkVK~rF~~--~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~-~LF~~h~DLl 79 (89)
T 1g1e_B 16 YVNKIKNRFQG--QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVA-RLFKNQEDLL 79 (89)
T ss_dssp HHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHH-HHTTTCHHHH
T ss_pred HHHHHHHHHcc--ChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHH-HHHccCHHHH
Confidence 35566667666 89999999999999864 222 3447888 8999887665
No 101
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=24.54 E-value=35 Score=29.34 Aligned_cols=51 Identities=12% Similarity=-0.053 Sum_probs=34.8
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-++|.|... ...+.+.|++.++.+....+.++|.+.+++.+.|.++.
T Consensus 129 ~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~ 179 (254)
T 2ayx_A 129 DMMILVVDDHPIN----------------RRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLS 179 (254)
T ss_dssp CCEEEEEESSHHH----------------HHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEeCCHHH----------------HHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 4678888877532 22233445444555667778899999999999998874
No 102
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=24.21 E-value=86 Score=26.05 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=25.0
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcChHH
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDNFTD 151 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs~ 151 (354)
.+..+.+.+++.+++.+|++|+++.-......
T Consensus 148 ~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~ 179 (257)
T 2q88_A 148 RVIVVPDGQSGLKMLQDGRIDVYSLPVLSIND 179 (257)
T ss_dssp GEEECSSHHHHHHHHHHTSCSEEEEEHHHHHH
T ss_pred eEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHH
Confidence 35567789999999999999998876554433
No 103
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.99 E-value=25 Score=26.30 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=19.8
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
.+....+.+++.+.+++++.|.++.
T Consensus 31 ~v~~~~~~~~al~~~~~~~~dlvil 55 (133)
T 3b2n_A 31 ILADTDNGLDAMKLIEEYNPNVVIL 55 (133)
T ss_dssp EEEEESCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEcCCHHHHHHHHhhcCCCEEEE
Confidence 3456678899999999988887774
No 104
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=23.48 E-value=46 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=31.3
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCCHHHHHHHhHc-----CCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPDPESAINAVRV-----GDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s~~ea~~~l~~-----g~v~~~v~ 144 (354)
..+|-|+|.|... ...+.+.++..++ .+....+.++|.+.+++ .+.|.++.
T Consensus 2 ~~~ILivdD~~~~----------------~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvll 58 (133)
T 2r25_B 2 SVKILVVEDNHVN----------------QEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFM 58 (133)
T ss_dssp CSCEEEECSCHHH----------------HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred CceEEEEcCCHHH----------------HHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3568888877532 1222233443343 34556788899888887 77887764
No 105
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.30 E-value=63 Score=24.54 Aligned_cols=52 Identities=15% Similarity=-0.048 Sum_probs=33.0
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc--cccccCCHHHHHHHhHc-------CCeEEEEE
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI--IKDYYPDPESAINAVRV-------GDAWGALY 144 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~--~~~~~~s~~ea~~~l~~-------g~v~~~v~ 144 (354)
.+.+|.|+|.|... ...+.+.++..+. .+....+.+++.+.+++ .+.|.++.
T Consensus 7 ~~~~ILivdd~~~~----------------~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlill 67 (149)
T 1i3c_A 7 PPKVILLVEDSKAD----------------SRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILL 67 (149)
T ss_dssp CCEEEEEECCCHHH----------------HHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEE
T ss_pred CCCeEEEEECCHHH----------------HHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEE
Confidence 34678888887532 2333445554442 45667788899988875 46777664
No 106
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=23.21 E-value=90 Score=25.59 Aligned_cols=30 Identities=10% Similarity=-0.086 Sum_probs=23.8
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcCh
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDNF 149 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~F 149 (354)
.+..+.+.+++.++|.+|++|+++.-....
T Consensus 140 ~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~ 169 (242)
T 3del_B 140 HIRSFDSTLEVLMEVMHGKSPVAVLEPSIA 169 (242)
T ss_dssp CEEEESSHHHHHHHHHTTSSSEEEECHHHH
T ss_pred eEEEECCHHHHHHHHHcCCCCEEEecHHHH
Confidence 345677899999999999999988754443
No 107
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=23.20 E-value=39 Score=27.56 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=34.6
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCccccc-ccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKD-YYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~-~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+.+|-|+|.|... ...+.+.|+..++.+. ...+.+++.+.+++.+.|.++.
T Consensus 13 ~~~iLivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~ 64 (205)
T 1s8n_A 13 PRRVLIAEDEALI----------------RMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM 64 (205)
T ss_dssp CCEEEEECSSHHH----------------HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEE
T ss_pred CccEEEEECCHHH----------------HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEE
Confidence 4578888887642 2333344544454444 6778899999999988988775
No 108
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=23.10 E-value=45 Score=24.60 Aligned_cols=51 Identities=12% Similarity=-0.036 Sum_probs=30.8
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcc-cccccCCHHHHHHHhHcC-CeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTI-IKDYYPDPESAINAVRVG-DAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~-~~~~~~s~~ea~~~l~~g-~v~~~v~ 144 (354)
..+|-|+|.|... .+.+.+.+++.++ .+....+.+++.+.+.++ +.|.++.
T Consensus 5 ~~~iLivdd~~~~----------------~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~ 57 (129)
T 3h1g_A 5 SMKLLVVDDSSTM----------------RRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLIT 57 (129)
T ss_dssp -CCEEEECSCHHH----------------HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEE
T ss_pred CcEEEEEeCCHHH----------------HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEE
Confidence 4678888877532 2333344544443 245566788888878765 6887663
No 109
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=22.82 E-value=75 Score=27.29 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=36.7
Q ss_pred CCceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCC-eEEEEE---eCc
Q psy17040 77 TGLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGD-AWGALY---FTD 147 (354)
Q Consensus 77 ~~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~-v~~~v~---IP~ 147 (354)
++.+|-|||.|... .+.+...++..+..+....|.++|.+.+++.. +|.++. .|.
T Consensus 123 ~~~~ILivDD~~~~----------------~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~ 181 (259)
T 3luf_A 123 QQIEVLVVDDSRTS----------------RHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPE 181 (259)
T ss_dssp TTCEEEEECSCHHH----------------HHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSS
T ss_pred CCCcEEEEeCCHHH----------------HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 35678889887532 23334455555555667788999999998774 787763 465
No 110
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=22.45 E-value=80 Score=26.33 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.7
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
+..+.+.+++.++|.+|++|+++.
T Consensus 147 i~~~~~~~~~~~~l~~GrvD~~~~ 170 (243)
T 4h5g_A 147 LTSLTNMGEAVNELQAGKIDAVHM 170 (243)
T ss_dssp EEEESCHHHHHHHHHHTSCSEEEE
T ss_pred eEEeCCHHHHHHHHHcCCccEEEe
Confidence 456778999999999999999875
No 111
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=21.90 E-value=1e+02 Score=21.99 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred hhHHHhccccccCccchhhhHHHHHHHHHH-------------HHHHHHHHhhhhhcChhHHH
Q psy17040 6 LRSILTRGWNLVEPDVYLGFISTITWIVLF-------------LTISMLVITSSTLFSPRVML 55 (354)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~i~~~elk~~~~Rdk~~l~ 55 (354)
+..+-+|=.+ +|++|--|+-+|++.+.= ..-...+++ .+|++.--|+
T Consensus 14 v~kVK~rF~~--~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~-~Lf~~hpDLl 73 (85)
T 1e91_A 14 VNKIKTRFLD--HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVA-NLFRGQEDLL 73 (85)
T ss_dssp HHHHHHHTSS--CHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHH-HHTSSCHHHH
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHH-HHHccCHHHH
Confidence 4556666666 899999999999987642 122457788 8999987665
No 112
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=21.62 E-value=40 Score=28.35 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=34.3
Q ss_pred CceEEEEeCCCCcccccCCCCCCCcccchhHHHHhhCCCCcccccccCCHHHHHHHhHcCCeEEEEE
Q psy17040 78 GLHLAIVNQEMDWATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALY 144 (354)
Q Consensus 78 ~~~vavvd~D~~~~~~~~~~~~~~~~~~~s~~li~~l~~~~~~~~~~~s~~ea~~~l~~g~v~~~v~ 144 (354)
..+|.|+|.|... ...+.+.|+..++.+....+.++|.+.+++.+.|.++.
T Consensus 5 ~~~ILivdd~~~~----------------~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvil 55 (238)
T 2gwr_A 5 RQRILVVDDDASL----------------AEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLL 55 (238)
T ss_dssp CCEEEEECSCHHH----------------HHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEE
T ss_pred cCeEEEEeCCHHH----------------HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 3578888887532 23333445444544556778899999999988888774
No 113
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=21.39 E-value=1.1e+02 Score=24.68 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=24.2
Q ss_pred ccccCCHHHHHHHhHcCCeEEEEEeCcChH
Q psy17040 121 KDYYPDPESAINAVRVGDAWGALYFTDNFT 150 (354)
Q Consensus 121 ~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs 150 (354)
+..+.+.+++.+++.+|++|+++.-.....
T Consensus 136 ~~~~~~~~~~~~~l~~grvDa~~~~~~~~~ 165 (229)
T 2y7i_A 136 PVAYDSYLNAFTDLKNNRLEGVFGDVAAIG 165 (229)
T ss_dssp EEEESCHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred EEecCCHHHHHHHHHcCCcCEEEechHHHH
Confidence 456678899999999999999887665443
No 114
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=21.24 E-value=1.2e+02 Score=24.40 Aligned_cols=31 Identities=6% Similarity=-0.033 Sum_probs=24.3
Q ss_pred cccccCCHHHHHHHhHcCCeEEEEEeCcChH
Q psy17040 120 IKDYYPDPESAINAVRVGDAWGALYFTDNFT 150 (354)
Q Consensus 120 ~~~~~~s~~ea~~~l~~g~v~~~v~IP~~Fs 150 (354)
.+..+.+.+++.+++.+|++|+++.-.....
T Consensus 137 ~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~ 167 (233)
T 1ii5_A 137 DVRETNNLTAAITLLQKKQVEAVMFDRPALI 167 (233)
T ss_dssp EEEEESSHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred CeEEcCCHHHHHHHHHcCCccEEEeCHHHHH
Confidence 3456678899999999999999987654433
No 115
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.40 E-value=85 Score=21.92 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=32.9
Q ss_pred hhHHHhccccccCccchhhhHHHHHHHHH---HHHHHHHHHhhhhhcChhHHH
Q psy17040 6 LRSILTRGWNLVEPDVYLGFISTITWIVL---FLTISMLVITSSTLFSPRVML 55 (354)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~elk~~~~Rdk~~l~ 55 (354)
++.+-.|=.+ +|++|--|+-+|+.++. -..-...+++ .+|++.--++
T Consensus 11 l~~VK~~F~~--~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~-~Lf~~hpdLi 60 (77)
T 2czy_A 11 LDQVKIRFGS--DPATYNGFLEIMKEFKSQSIDTPGVIRRVS-QLFHEHPDLI 60 (77)
T ss_dssp HHHHHHHTTT--CHHHHHHHHHHHHHHHTTCSCHHHHHHHHH-HHTTTCHHHH
T ss_pred HHHHHHHHcc--ChHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHcCCHHHH
Confidence 4444455555 79999999999998762 1134457788 8999876654
No 116
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=20.00 E-value=1.5e+02 Score=22.09 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=35.5
Q ss_pred hhhHHHhccccccCccchhhhHHHHHHHHHHH-------------HHHHHHHhhhhhcChhHHH
Q psy17040 5 SLRSILTRGWNLVEPDVYLGFISTITWIVLFL-------------TISMLVITSSTLFSPRVML 55 (354)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~~elk~~~~Rdk~~l~ 55 (354)
-+..+-+|=.+ +|++|--|+-+|++.+.=- .-...+++ .+|++.--|+
T Consensus 13 YvnkVK~rF~d--~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~-~LF~~hpDLl 73 (105)
T 2f05_A 13 YVNKIKTRFLD--HPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVA-NLFRGQEDLL 73 (105)
T ss_dssp HHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHH-HHTTTCHHHH
T ss_pred HHHHHHHHHcc--ChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHH-HHHccCHHHH
Confidence 35566677666 9999999999999876431 12457788 8999987764
Done!