RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17040
(354 letters)
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 49.2 bits (117), Expect = 1e-06
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 226 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 285
+ + F+ PGVIL V F + SSAL ER G L+R V+ V+ L IL ++
Sbjct: 80 SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139
Query: 286 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
VV LVL+ + F+ GV G LLL+++L +L L +
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVAL 185
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/123 (19%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 212 KIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWV 271
+ + P+ + + + + ++ ++L ++ + + + +++ E+ + +R V
Sbjct: 73 ALKNAPVNVEITPLFNPNSGYAYYLLG-LLLFLLILIGALIIALSIVEEKESRIKERLLV 131
Query: 272 AGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMC 330
+GV+PL+ L ++ +V Q +LI ++ +FG+ G+LLL+++L +L GL +
Sbjct: 132 SGVSPLKYLLGKILGDLLVGLIQ---LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIA 188
Query: 331 FVF 333
Sbjct: 189 LGA 191
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/152 (19%), Positives = 65/152 (42%), Gaps = 7/152 (4%)
Query: 182 QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI 241
Q+ +L R+ +RD + LL P + + ++G+ D S PG++
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRL-IQPLLMALVFGT---VFGNLDTSLGGLNRPGLL 56
Query: 242 LTIVFFLAV-ALTSSALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVL 299
+ F A +LT + + R G+L+R + + +P + + ++ + + Q + L
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 300 IFMIFVFGVECKGDLLLVIILTILQGLCGMCF 331
+ + F+ G+ L +++ +L L
Sbjct: 117 LIVYFMVGLP-VSRFFLFLLVLLLTALAASGL 147
>gnl|CDD|224582 COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 407
Score = 33.2 bits (76), Expect = 0.18
Identities = 54/311 (17%), Positives = 99/311 (31%), Gaps = 53/311 (17%)
Query: 30 TWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILFCLAIGRDPTGLHLAIVNQEMD 89
W V + L+ L S ++L L + +I+ L +A+V++
Sbjct: 4 LWTVAKKELKDLLRDRKFLLSTFIVLLPLLLAGISIIISLFEKAGKEEKLKIAVVDEGYA 63
Query: 90 WATKACPVLSNCSFTHLSCRYLNSLPNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNF 149
L ++P E A AV++G G L NF
Sbjct: 64 VLESG----------------LKAVPGAVDTGIAGSSIEDAEEAVKLGKIDGLLVIPRNF 107
Query: 150 TDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQ 209
D + A + + V D+S Q L R +L +L + +
Sbjct: 108 ADTVEA----------DEYAGELVLVKEDISRLQADLTYARISKL-----LAELGLSVGE 152
Query: 210 NPKIADIPIQFKEPIYGSND----------PSFTDFVAPGVILTIVFFLAVALTSSALII 259
+ IP + P+ + ++ I A + + ++
Sbjct: 153 RLQALGIPPKVDNPVVSEGGESLPPEEISAALLLVAILIFLLFFIPLSYAGQMVADSVAG 212
Query: 260 ER----MEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLL 315
E+ +E LL + V+ EI+F ++ +V Q AL L+ + L
Sbjct: 213 EKERRTLEVLL----SSPVSRSEIVFGKILGAALVGLTQIALWLLALTIAT----FLSLA 264
Query: 316 LVIILTILQGL 326
+ + T L L
Sbjct: 265 VALAGTGLALL 275
>gnl|CDD|232788 TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family.
The seed members for this model are a paralogous family
of Mycobacterium tuberculosis. Nearly all proteins
scoring above the noise cutoff are from high-GC
Gram-positive organisms. The members of this paralogous
family of efflux proteins are all found in operons with
ATP-binding chain partners. They are related to a
putative daunorubicin resistance efflux protein of
Streptomyces peucetius. This model represents a branch
of a larger superfamily that also includes NodJ, a part
of the NodIJ pair of nodulation-triggering signal efflux
proteins. The members of this branch may all act in
antibiotic resistance.
Length = 232
Score = 30.9 bits (70), Expect = 0.70
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 231 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVV 290
F+ + L + + A+ +R G L R + L IL + V
Sbjct: 34 RGATFIPVLMALAAISTAFT-GQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAV-VA 91
Query: 291 MCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 323
L+L+ + FV G G L + L +
Sbjct: 92 RVFLQTLILLVIGFVLGFRFAGGALTALTLGAV 124
>gnl|CDD|188444 TIGR03929, T7_esaA_Nterm, type VII secretion protein EsaA,
N-terminal domain. Members of this family are
associated with type VII secretion of WXG100 family
targets in the Firmicutes, but not in the
Actinobacteria. This model represents the conserved
N-terminal domain.
Length = 193
Score = 30.8 bits (70), Expect = 0.72
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 12/44 (27%)
Query: 53 VMLFIFALPVMQVILFCLAIGRDP--------TGLHLAIVNQEM 88
++LFI LP LF LAIG++P +++AIVN++
Sbjct: 4 LVLFIVLLPG----LFFLAIGQNPKKQKTNQNAKMNIAIVNEDQ 43
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 30.9 bits (70), Expect = 0.77
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 158 VLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQN 210
VL RD L + +DM N + RD ++Y AQDLL T D
Sbjct: 34 VLARD-----LVNDHDIIQVDMRNHGLS---PRDPVMNYPAMAQDLLDTLDAL 78
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 30.8 bits (70), Expect = 1.0
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 235 FVAPGVILTIVFFLAVALTSSALIIER-MEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 293
G ++ I+ + + + ++ + LL+R A ++V+ +++
Sbjct: 180 LYPAGAVIGILLIVGLYMLYKGFGLDDLVAELLERVREALYEGRVSFITYVVAGLLLI-- 237
Query: 294 QTALVLIFMIFVFGVECKGDLLLVIILTIL 323
+ + LL I IL
Sbjct: 238 ----LGGASSLTIALSSSAGALLAISTFIL 263
>gnl|CDD|217710 pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family
includes enzymes that ADP-ribosylations, for example
ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves
ADP-ribose-L-arginine. The family also includes
dinitrogenase reductase activating glycohydrolase. Most
surprisingly the family also includes jellyfish
crystallins, these proteins appear to have lost the
presumed active site residues.
Length = 284
Score = 30.4 bits (69), Expect = 1.2
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 109 RYLNSLPNDTIIKDYYPDPES--AINAVRVGDAWGALYFTDNFTDALVARMVLGRDAD 164
R L + Y A+ A+ + L TD+F +AL+ + LG D D
Sbjct: 205 RALAESDDVDEELLYDRLGSGGYAVEALPAA-LYALLRATDDFEEALLLAVNLGGDTD 261
>gnl|CDD|165774 PLN00209, PLN00209, ribosomal protein S27; Provisional.
Length = 86
Score = 27.5 bits (61), Expect = 3.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 279 ILFSHVITQFVVMCGQTALVL 299
+FSH +Q VV+CG VL
Sbjct: 47 TVFSH--SQTVVVCGSCQTVL 65
>gnl|CDD|222863 PHA02540, 61, DNA primase; Provisional.
Length = 337
Score = 28.4 bits (64), Expect = 5.6
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 107 SCRYLNSLPNDTIIKDYYPD---PESAINAVRVGDAWGALYFTDNFTD 151
C L++LP D I Y + P+ D W LYFT +
Sbjct: 117 FCERLDTLPEDHPIIKYVENRCIPK---------DKWKLLYFTREWQK 155
>gnl|CDD|220905 pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791).
This is a family of proteins found in archaea and
bacteria. This domain contains a P-loop motif suggesting
it binds to a nucleotide such as ATP.
Length = 417
Score = 28.7 bits (65), Expect = 5.7
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 154 VARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNP 211
V + +EE +D + ++ ++G + + RDF D+L +QNP
Sbjct: 345 VRDVYAQGYGEEERVDDEYLAAFMQHVAGRLGGAVFVTPREFIRDFV-DVLDILEQNP 401
>gnl|CDD|222737 pfam14400, Transglut_i_TM, Inactive transglutaminase fused to 7
transmembrane helices. A family of inactive
transglutaminases fused to seven transmembrane helices.
The transglutaminase domain is predicted to be
extracellularly located. Members of this family are
associated in gene neighborhoods with a pepsin-like
peptidase and an ATP-grasp of the RimK-family. The
ATP-grasp is predicted to modify the 7TM protein or a
cofactor that interacts with it.
Length = 164
Score = 27.6 bits (62), Expect = 7.0
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 150 TDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRD 191
+AL+ R AD T + I+ D +Q L+L
Sbjct: 121 AEALLEE-ARSRSADNLTFARELIKRLNDPDDQNAALLLGSA 161
>gnl|CDD|235695 PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate
octaprenyltransferase; Validated.
Length = 293
Score = 28.2 bits (64), Expect = 7.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 21 VYLGFISTITWIVLFLTISMLVITSSTLF---SPRVMLFIFALPVM 63
V LG + L ++ L I L SP +LF+ +LP+
Sbjct: 206 VRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGLLFLLSLPLA 251
>gnl|CDD|237395 PRK13482, PRK13482, DNA integrity scanning protein DisA;
Provisional.
Length = 352
Score = 27.8 bits (63), Expect = 9.3
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 119 IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQS 171
+I+DY + + + + L + + +AR +LG E LD
Sbjct: 231 LIRDYSQEKDEDPEEIL--EELQELSSEELLDLSAIAR-LLGYPGGSEALDTP 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.438
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,346,792
Number of extensions: 1825987
Number of successful extensions: 2868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2851
Number of HSP's successfully gapped: 96
Length of query: 354
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 256
Effective length of database: 6,590,910
Effective search space: 1687272960
Effective search space used: 1687272960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.4 bits)