RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17040
(354 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 1e-09
Identities = 66/387 (17%), Positives = 105/387 (27%), Gaps = 154/387 (39%)
Query: 1 MATTSLRSI-LTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVML---F 56
M S R + L+ G S L +LV + F L F
Sbjct: 1 MDAYSTRPLTLSHG-------------S--------LEHVLLV--PTASFFIASQLQEQF 37
Query: 57 IFALPVMQVILFCLAIGRDPTG-LHLAI-----VNQEMDWATKA--CPVLSNCSFTHLSC 108
LP A +PT L V+ ++ + VL+ T
Sbjct: 38 NKILPEPTE---GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL-CLTEFEN 93
Query: 109 RYLN---------SLPNDT---------IIKDYY-----------PDPESA-INAVRVGD 138
YL L + +IK+Y SA AV G+
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 139 AWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRD 198
A L + G Q + + L RDL +Y
Sbjct: 154 A--QLV------------AIFG--------GQGNTDDYFE------EL---RDLYQTYHV 182
Query: 199 FAQDLLSTCDQN-PKIADIPIQFKEPIYGS--------NDPSFTDFVAPGVILTIVFFLA 249
DL+ + ++ + E ++ +PS P +L
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDA-EKVFTQGLNILEWLENPS----NTPDKD-----YLL 232
Query: 250 VALTSSALIIERMEGLLDRSW------VAGVTPLEILFSH----------VITQFVVMCG 293
S LI G++ + + G TP E L S+ ++T +
Sbjct: 233 SIPISCPLI-----GVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAIAET 286
Query: 294 QT----------ALVLIFMIFVFGVEC 310
+ A+ ++F I GV C
Sbjct: 287 DSWESFFVSVRKAITVLFFI---GVRC 310
Score = 41.6 bits (97), Expect = 4e-04
Identities = 67/359 (18%), Positives = 109/359 (30%), Gaps = 127/359 (35%)
Query: 2 ATTSLRSILTRGWNLVE--------PDV-YLGFISTITWIVLFLT-ISMLVITSSTL-FS 50
T + T+G N++E PD YL I I+ ++ + ++ V+T+ L F+
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 51 PRVMLFIF--------ALPVMQVI-------------------LFCLAIG-R-------- 74
P + L I LF IG R
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--FIGVRCYEAYPNT 317
Query: 75 --DPTGLHLAIVNQEMDWATKACPVLS--NCSFTHL--SCRYLN-SLPNDT---IIKDYY 124
P+ L ++ N E P+LS N + + N LP I
Sbjct: 318 SLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----- 368
Query: 125 PDPESAINAVR--V--GDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMS 180
S +N + V G +LY L L + LDQS I S
Sbjct: 369 ----SLVNGAKNLVVSGPP-QSLY-------GLNLT--LRKAKAPSGLDQSRIP----FS 410
Query: 181 NQQIGLMLNRDLQLSYRDF--------------AQDLLSTCDQNPKIADIPIQFKEPIY- 225
R L+ S R F A DL++ ++ + P+Y
Sbjct: 411 E--------RKLKFSNR-FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 226 ---GSN----DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPL 277
GS+ S ++ + +I V + + I++ +G+ L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-----FGPGGASGLGVL 515
Score = 38.5 bits (89), Expect = 0.004
Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 53/147 (36%)
Query: 182 QQIGLMLNRDLQLSYRDF--AQDLLSTCDQ----------------NPKIADIPIQFKEP 223
Q+ G M DL Y+ AQD+ + D NP ++ I F
Sbjct: 1627 QEQG-M-GMDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV--NLTIHFGGE 1679
Query: 224 ----IYGSNDPSFT-DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLE 278
I N + + + G + T F + S++ +GLL
Sbjct: 1680 KGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---------- 1728
Query: 279 ILFSHVITQFVVMCGQTALVLI-FMIF 304
TQF Q AL L+ F
Sbjct: 1729 -------TQFT----QPALTLMEKAAF 1744
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 31/243 (12%), Positives = 73/243 (30%), Gaps = 71/243 (29%)
Query: 105 HLSCRYLNSLPNDTIIKDY-YPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDA 163
+ + S+ D + ++ D + ++ + + +++ +DA
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--------------LSKEEIDHIIMSKDA 60
Query: 164 DEETLDQSEIRVW--LDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK-IADIPIQF 220
TL W L + + + L+++Y F + T + P + + I+
Sbjct: 61 VSGTL----RLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 221 KEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLD-RSWVAGVTPLEI 279
++ +Y N V R++ L R + + P +
Sbjct: 116 RDRLYNDNQVFAKYNV-----------------------SRLQPYLKLRQALLELRPAKN 152
Query: 280 LFSHVITQFVVM--CGQTALVL-------IFMIFVFGV------ECKGDLLLVIILTILQ 324
+ + G+T + L + F + C +L +LQ
Sbjct: 153 VLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---VLEMLQ 203
Query: 325 GLC 327
L
Sbjct: 204 KLL 206
Score = 36.8 bits (84), Expect = 0.011
Identities = 38/297 (12%), Positives = 81/297 (27%), Gaps = 97/297 (32%)
Query: 9 ILTRGWNLVEPDVYLGFISTITWIVLFLTISMLVITSSTLFSPRVMLFIFALPVMQVILF 68
+ TR + + F+S T + L S +P + + +
Sbjct: 270 LTTRFKQVTD------FLSAATTTHISL------DHHSMTLTPDEVKSLLLK-YLDCRPQ 316
Query: 69 CL---AIGRDPTGLHLAIVNQEMD--------WATKACPVLSNC---SFTHLSCRYLNSL 114
L + +P L+I+ + + W C L+ S L
Sbjct: 317 DLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE------- 367
Query: 115 PNDTIIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIR 174
P + + + ++ F A + ++L
Sbjct: 368 PAE--YRKMFDR--LSV-------------FPP---SAHIPTILLSL------------- 394
Query: 175 VWLDMSNQQIGLMLN------------RDLQLSYRDFAQDLLSTCDQNP----KIADIPI 218
+W D+ + +++N ++ +S +L + I D
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD--- 451
Query: 219 QFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGL----LDRSWV 271
+ P +D D + P + + L + ERM LD ++
Sbjct: 452 HYNIPKTFDSD----DLIPPYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFL 503
Score = 36.8 bits (84), Expect = 0.013
Identities = 36/276 (13%), Positives = 71/276 (25%), Gaps = 69/276 (25%)
Query: 110 YLNSLPNDT--IIKDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARM------VLGR 161
+ L ND K + +R AL + L+ + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQ-PYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 162 DA--DEETLDQSEIRV-WLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPI 218
D + + + ++ WL++ N + LQ + S D ++I +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---SSNIKL 225
Query: 219 QFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLE 278
+ + + L + L++ L A
Sbjct: 226 RIHS-----------------IQAELRRLLKSKPYENCLLV------LLNVQNAKA--WN 260
Query: 279 -------ILF---SHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGL-- 326
IL +T F+ T + L + LLL + Q L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 327 ---------CGMC--FVFGRKNIFE-WKLYNGNKKQ 350
+ + ++ WK N +K
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.6 bits (86), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 107 SCRYL-NSLPNDTIIKDYYPD--PESAINA 133
+ + L SL K Y D P AI A
Sbjct: 21 ALKKLQASL------KLYADDSAPALAIKA 44
Score = 29.1 bits (64), Expect = 1.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 182 QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIA 214
Q + + LQ S + +A D S P +A
Sbjct: 20 QAL-----KKLQASLKLYADD--SA----PALA 41
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide,
dipteran specificity, conformational change; 1.75A
{Bacillus thuringiensis serovarisraelensis}
Length = 558
Score = 31.0 bits (69), Expect = 0.73
Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 13/172 (7%)
Query: 101 CSFTHLSCRYLNSLPNDTI-----IKDYYPDPESAINAVRV---GDAWGALYFTDNFTDA 152
++TH N + D I +K + + + + GD + T N T +
Sbjct: 379 FAWTHKIVDPNNQIYTDAITQVPAVKSNFLNATAKVIKGPGHTGGD---LVALTSNGTLS 435
Query: 153 LVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPK 212
+ + +R+ +N I L ++ LQ R ST +
Sbjct: 436 GRMEIQCKTSIFNDPTRSYGLRI-RYAANSPIVLNVSYVLQGVSRGTTISTESTFSRPNN 494
Query: 213 IADIPIQFKEPIYGSNDPSFTDFVAP-GVILTIVFFLAVALTSSALIIERME 263
I ++++E Y + ++TI +++ +II+R+E
Sbjct: 495 IIPTDLKYEEFRYKDPFDAIVPMRLSSNQLITIAIQPLNMTSNNQVIIDRIE 546
>2woe_A ADP-ribosyl-[dinitrogen reductase] glycohydrolase; dimanganese,
nitrogen fixation, ADP-ribosylglycohydrolase,
mono-ADP-ribosylhydrolase; HET: AR6 TLA; 1.90A
{Rhodospirillum rubrum} PDB: 2woc_A 2wod_A*
Length = 299
Score = 29.2 bits (66), Expect = 2.1
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 121 KDYYPDPESAINAVRVGD----AWGALYFTDNFTDALVARMVLGRDAD 164
+D++ +P ++ + D + TD F L+ + G DAD
Sbjct: 203 RDFHFEPYKGQSSAYIVDTMQTVLHYYFVTDTFKSCLIQTVNQGGDAD 250
>3o5t_A Dinitrogenase reductase activacting glicohydrolas; ADP binding,
hydrolase-transcription complex; HET: ADP; 2.09A
{Azospirillum brasilense} PDB: 3g9d_A*
Length = 297
Score = 27.7 bits (62), Expect = 5.7
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 121 KDYYPDPESAINAVRVGD----AWGALYFTDNFTDALVARMVLGRDAD 164
+ + P + + D + TD+ +V + G DAD
Sbjct: 198 RQFKFQPYRGLATAYIVDTMQTVMHYYFQTDSVESCVVETVNQGGDAD 245
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 27.9 bits (62), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 124 YPDPESAINA-VRVGDAWGALYFTDNF 149
YPD + A R G+ W LY+ DN+
Sbjct: 451 YPDADLLDPARNRSGEPWHHLYYKDNY 477
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 27.4 bits (61), Expect = 7.1
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 11/54 (20%)
Query: 138 DAWGALYFTDNFTDALVARMVLGRDADEETLDQSEIRVWLDMSNQQIGLMLNRD 191
+A L ++D R VLG D + V LD + G ++
Sbjct: 54 EAQRTLVWSDLV-----GRRVLGWRED------GTVDVLLDATAFTNGNAVDAQ 96
>3boq_A Transcriptional regulator, MARR family; MARR famil structural
genomics, PSI-2, protein structure initiative; 2.39A
{Silicibacter pomeroyi dss-3}
Length = 160
Score = 27.0 bits (60), Expect = 7.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 158 VLGRDADEETLDQSEIRVWLDMS--NQQIGLMLNRDLQ----LSYRDFAQDLLSTCDQNP 211
+G A + Q++ R+WL++ + + LNR L LS F D ++ +NP
Sbjct: 3 AMGEAATKSDRQQNQTRLWLNILRLHGLVFGDLNRQLLDETGLSLAKF--DAMAQLARNP 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.438
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,437,178
Number of extensions: 323851
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 21
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.4 bits)