BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17041
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGC 198
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 130 TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGC 198
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 130 TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGC 198
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 130 TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGC 198
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 130 TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
>pdb|3W11|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With Human Insulin, Alpha-ct
Peptide(704-719) And Fab 83-7
pdb|3W12|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alpha-ct Peptide(704-719) And Fab
83-7
pdb|3W13|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1-cr In Complex With High-affinity Insulin Analogue
[d-pro-b26]-dti-nh2, Alphact Peptide(693-719) And Fab
83-7
Length = 310
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGC 198
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 130 TIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHC 188
>pdb|3ZV0|A Chain A, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|B Chain B, Structure Of The Shq1p-Cbf5p Complex
Length = 369
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 14 VLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIANNISLATLQWGNKKDEPVYVTEE 73
+L YG +L + + +S GND + PE AN+ + L+ N K +P Y E
Sbjct: 21 ILKTKYGFDNLYDTVISVSTSNGNDINELDDPEHTDANDRVIERLRKENLKFDPEYYVSE 80
>pdb|3UAH|A Chain A, Structure Of The Shq1 Specific Domain From Saccharomyces
Cerevisiae
pdb|3UAI|D Chain D, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 366
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 14 VLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIANNISLATLQWGNKKDEPVYVTEE 73
+L YG +L + + +S GND + PE AN+ + L+ N K +P Y E
Sbjct: 24 ILKTKYGFDNLYDTVISVSTSNGNDINELDDPEHTDANDRVIERLRKENLKFDPEYYVSE 83
>pdb|3ZUZ|A Chain A, Structure Of Shq1p C-Terminal Domain
Length = 365
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 14 VLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIANNISLATLQWGNKKDEPVYVTEE 73
+L YG +L + + +S GND + PE AN+ + L+ N K +P Y E
Sbjct: 23 ILKTKYGFDNLYDTVISVSTSNGNDINELDDPEHTDANDRVIERLRKENLKFDPEYYVSE 82
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 100 YYPDPESAINAVRVGDA------WGALY-FTDNFTDALVARMVLGRDADEETLD 146
++PDP++ ++ V +A W Y TDN+ + + R+ DE+ LD
Sbjct: 488 FFPDPKALVDKVHAMNAQIMISVWPKFYPTTDNYKELNAKGFMFNRNLDEKNLD 541
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 54 SLATLQWGNKKDEPVYVTEESGVVGLMFHQSKEILIQDHSNGHYDDYYPDP------ESA 107
+L TL++ K+D PVY+ + ++G + +E+ SNG + YP+P E A
Sbjct: 46 ALFTLEYIGKQDVPVYLGSQRPILG-NWRTVEEV---HGSNGMSNWNYPEPNKRPEKEHA 101
Query: 108 INAV 111
I+A+
Sbjct: 102 IDAI 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,213,722
Number of Sequences: 62578
Number of extensions: 253182
Number of successful extensions: 483
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 19
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)