BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17041
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P15208|INSR_MOUSE Insulin receptor OS=Mus musculus GN=Insr PE=1 SV=2
Length = 1372
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGCH 199
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 157 TIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATVINGQFVERCWTHSHCQ 216
>sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
Length = 1382
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGCH 199
T+D S I + + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 157 TIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQ 216
>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum
GN=abcG20 PE=3 SV=1
Length = 730
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 1 MRSGRLLAEESPQVLLQTYGCQSLEEVFLKLSRK 34
+R G++L +P L++ Y Q+LEEVFLKL ++
Sbjct: 217 LRDGKILENGAPNYLIERYESQTLEEVFLKLCKR 250
>sp|P15127|INSR_RAT Insulin receptor OS=Rattus norvegicus GN=Insr PE=1 SV=1
Length = 1383
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 144 TLDQSEIRPNGKSVMMIEQEDDNSSCGDCCPLTTKGKTKA---LLQKNFL-RMWRNVGCH 199
T+D S I + ++ +DDN CGD CP T KGKT ++ F+ R W + C
Sbjct: 156 TIDWSRILDYVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATVINGQFVERCWTHSHCQ 215
>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum
GN=abcG23 PE=3 SV=2
Length = 701
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1 MRSGRLLAEESPQVLLQTYGCQSLEEVFLKLSR 33
+R+GR+L P LL Y C LE+V+ KL R
Sbjct: 210 LRNGRILESGPPNYLLSKYECSLLEDVYYKLCR 242
>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana
GN=PDIL1-4 PE=1 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 5 RLLAEESPQVLLQTYG-----CQSLEEVFLKLSRKQGN---------DATANNVPEVNIA 50
++ ++S VLL+ Y CQ+LE ++ KL++ + D T N P+
Sbjct: 453 EIVLDDSKDVLLEVYAPWCGHCQALEPMYNKLAKHLRSIDSLVITKMDGTTNEHPKAKAE 512
Query: 51 NNISLATLQWGNKKDEPVYVTEESGVVGL 79
++ GNK EP+ V + VV
Sbjct: 513 GFPTILFFPAGNKTSEPITVDTDRTVVAF 541
>sp|P37624|YHIH_ECOLI Uncharacterized ABC transporter ATP-binding protein YhiH
OS=Escherichia coli (strain K12) GN=yhiH PE=3 SV=3
Length = 911
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 1 MRSGRLLAEESPQVLLQTYGCQSLEEVF---LKLSRKQGNDATANNV 44
M +G++LA +PQ L++ G SLEE F L+ + Q N+A A V
Sbjct: 480 MHAGKVLASGTPQELVEKRGAASLEEAFIAYLQEAAGQSNEAEAPPV 526
>sp|P0A939|BAME_SHIFL Outer membrane protein assembly factor BamE OS=Shigella flexneri
GN=bamE PE=3 SV=1
Length = 113
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 5 RLLAEESPQVLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIA 50
+ L + +L+ T GC +LE V + QGN TAN+V ++ +
Sbjct: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVG 49
>sp|Q32CX2|BAME_SHIDS Outer membrane protein assembly factor BamE OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=bamE PE=3 SV=2
Length = 113
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 5 RLLAEESPQVLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIA 50
+ L + +L+ T GC +LE V + QGN TAN+V ++ +
Sbjct: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVG 49
>sp|P0A937|BAME_ECOLI Outer membrane protein assembly factor BamE OS=Escherichia coli
(strain K12) GN=bamE PE=1 SV=1
Length = 113
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 5 RLLAEESPQVLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIA 50
+ L + +L+ T GC +LE V + QGN TAN+V ++ +
Sbjct: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVG 49
>sp|P0A938|BAME_ECOL6 Outer membrane protein assembly factor BamE OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=bamE PE=3
SV=1
Length = 113
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 5 RLLAEESPQVLLQTYGCQSLEEVFLKLSRKQGNDATANNVPEVNIA 50
+ L + +L+ T GC +LE V + QGN TAN+V ++ +
Sbjct: 4 KTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVG 49
>sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens
GN=FGD4 PE=1 SV=2
Length = 766
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 31 LSRKQGNDATANNVPEVNIANNISLATLQWGNKKDEPVYVTEESGVVGLMFHQSKEILIQ 90
L ++QGND + +AN + A Q ++++ ++ ++ + Q+ E L+
Sbjct: 71 LPQRQGNDTDKTQGAQTCVANGVMAAQNQMECEEEKAATLSSDTSI------QASEPLLD 124
Query: 91 DH-SNGHYDDYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMVLGRDADEETLDQSE 149
H NG D+ P S G+A + Y T L + R A+ ET Q
Sbjct: 125 THIVNGERDETATAPASPTTDSCDGNASDSSYRTPGIGPVLP---LEERGAETETKVQE- 180
Query: 150 IRPNGKSVMMIEQEDDN 166
R NG+S + +EQ D +
Sbjct: 181 -RENGESPLELEQLDQH 196
>sp|A4PBP6|RDRP_RGDV RNA-directed RNA polymerase P1 OS=Rice gall dwarf virus PE=3 SV=1
Length = 1458
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 58 LQWGNKKDEPVYVTEESGVVGLMFHQ-SKEILIQDHSNGHYDDYY 101
+QW N D V T ++ V G++FH+ S+ +Q+ G YDD +
Sbjct: 40 IQWRNGSDNQVDSTNDASVKGMVFHRVSERNELQNRYAGLYDDLF 84
>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana
GN=PDIL1-3 PE=2 SV=1
Length = 579
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 5 RLLAEESPQVLLQTYG-----CQSLEEVFLKLSRKQGN---------DATANNVPEVNIA 50
++ +ES VLL+ Y CQS E ++ KL + D T+N P
Sbjct: 449 EIVLDESKDVLLEIYAPWCGHCQSFEPIYNKLGKYLKGIDSLVVAKMDGTSNEHPRAKAD 508
Query: 51 NNISLATLQWGNKKDEPVYVTEESGVVGL 79
++ GNK +P+ V + VV L
Sbjct: 509 GFPTILFFPGGNKSFDPIAVDVDRTVVEL 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,846,811
Number of Sequences: 539616
Number of extensions: 3132036
Number of successful extensions: 6973
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6959
Number of HSP's gapped (non-prelim): 19
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)