Query psy17041
Match_columns 202
No_of_seqs 189 out of 310
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:17:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12051 DUF3533: Protein of u 96.7 0.0032 6.9E-08 57.8 6.0 36 103-138 80-116 (382)
2 TIGR03061 pip_yhgE_Nterm YhgE/ 95.7 0.013 2.8E-07 47.4 3.8 30 103-132 84-113 (164)
3 PF12399 BCA_ABC_TP_C: Branche 89.9 0.15 3.3E-06 29.2 0.9 22 5-29 1-22 (23)
4 PF12698 ABC2_membrane_3: ABC- 88.9 0.2 4.4E-06 42.2 1.4 33 99-131 61-93 (344)
5 COG1511 Predicted membrane pro 75.8 2.2 4.7E-05 43.2 2.8 36 99-134 85-120 (780)
6 smart00079 PBPe Eukaryotic hom 39.5 32 0.00069 25.6 2.8 23 99-122 49-71 (134)
7 COG4586 ABC-type uncharacteriz 33.7 26 0.00057 32.1 1.8 21 1-21 230-250 (325)
8 PRK11898 prephenate dehydratas 32.3 37 0.0008 30.2 2.5 26 99-124 31-57 (283)
9 PRK13669 hypothetical protein; 31.5 33 0.00072 25.3 1.7 19 1-19 50-68 (78)
10 PRK11899 prephenate dehydratas 29.9 44 0.00096 29.9 2.6 26 99-124 31-57 (279)
11 PLN02317 arogenate dehydratase 28.8 46 0.00099 31.3 2.5 26 99-124 121-147 (382)
12 PF04591 DUF596: Protein of un 28.8 41 0.0009 24.4 1.8 18 2-20 10-27 (70)
13 COG1131 CcmA ABC-type multidru 28.0 37 0.0008 30.1 1.7 21 1-21 210-230 (293)
14 PF07293 DUF1450: Protein of u 28.0 41 0.00088 24.7 1.7 19 1-19 50-68 (78)
15 PRK05337 beta-hexosaminidase; 25.5 69 0.0015 29.3 3.1 25 105-129 15-39 (337)
16 PF11195 DUF2829: Protein of u 25.3 50 0.0011 23.7 1.7 14 103-116 2-15 (75)
17 PF00800 PDT: Prephenate dehyd 23.9 47 0.001 27.2 1.6 25 99-123 27-52 (181)
18 PF01590 GAF: GAF domain; Int 23.5 48 0.001 24.5 1.4 20 112-131 116-140 (154)
19 PF05225 HTH_psq: helix-turn-h 23.3 35 0.00075 22.1 0.5 13 103-115 4-16 (45)
20 KOG0059|consensus 22.7 53 0.0011 33.8 1.9 22 1-22 771-792 (885)
21 PRK06091 membrane protein FdrA 21.7 1E+02 0.0022 30.6 3.5 30 104-135 131-160 (555)
22 COG4175 ProV ABC-type proline/ 21.2 55 0.0012 30.7 1.6 20 1-20 238-257 (386)
23 PF13893 RRM_5: RNA recognitio 21.2 56 0.0012 20.9 1.2 19 99-117 26-46 (56)
24 KOG3157|consensus 21.1 33 0.00072 30.2 0.1 30 99-135 41-70 (244)
25 PRK09536 btuD corrinoid ABC tr 21.1 54 0.0012 30.7 1.5 26 1-29 212-237 (402)
26 PRK13537 nodulation ABC transp 21.0 52 0.0011 29.2 1.3 19 1-19 211-229 (306)
27 PRK10622 pheA bifunctional cho 20.6 90 0.0019 29.2 2.9 24 99-122 134-158 (386)
28 TIGR01188 drrA daunorubicin re 20.6 60 0.0013 28.5 1.6 21 1-21 197-217 (302)
29 COG0178 UvrA Excinuclease ATPa 20.5 74 0.0016 33.2 2.4 28 2-31 562-589 (935)
No 1
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=96.72 E-value=0.0032 Score=57.82 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=33.4
Q ss_pred CHHHHHHHHHcCcEEEEEEcCCCchHHHHHHH-HhCC
Q psy17041 103 DPESAINAVRVGDAWGALYFTDNFTDALVARM-VLGR 138 (202)
Q Consensus 103 s~seA~~avk~G~~WG~I~F~~NFTe~l~~R~-~~g~ 138 (202)
+.++|.++|++||+||+|+.++|||+.|..=+ +.|.
T Consensus 80 ~~~~~~~~V~~~kywaAI~I~~naT~~l~~al~~~~~ 116 (382)
T PF12051_consen 80 SPEEAREGVYDGKYWAAIVIPPNATANLYSALSQNGN 116 (382)
T ss_pred CHHHHHHHHhcccEEEEEEeCCChhHHHHHHhccCCC
Confidence 99999999999999999999999999999888 5554
No 2
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=95.68 E-value=0.013 Score=47.44 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=28.8
Q ss_pred CHHHHHHHHHcCcEEEEEEcCCCchHHHHH
Q psy17041 103 DPESAINAVRVGDAWGALYFTDNFTDALVA 132 (202)
Q Consensus 103 s~seA~~avk~G~~WG~I~F~~NFTe~l~~ 132 (202)
+.+||.+++++|++.|+|+||++||+.+..
T Consensus 84 ~~~ea~~~l~~g~~~~~ivIP~~Fs~~l~~ 113 (164)
T TIGR03061 84 SAKEAEKGLADGKYYMVITIPEDFSENATS 113 (164)
T ss_pred CHHHHHHHhHcCcEEEEEEECcchhHHHHh
Confidence 899999999999999999999999999875
No 3
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=89.86 E-value=0.15 Score=29.24 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.6
Q ss_pred eEeccCChHHHHHHhCCCCHHHHHH
Q psy17041 5 RLLAEESPQVLLQTYGCQSLEEVFL 29 (202)
Q Consensus 5 rllaegtp~eL~~~~~~~sLEdaFl 29 (202)
++||+|+|+++++.-. +-+|||
T Consensus 1 ~via~G~p~~i~~n~~---V~~aYL 22 (23)
T PF12399_consen 1 RVIAEGTPEEIRANPE---VREAYL 22 (23)
T ss_pred CEeeEcCHHHHhcCHH---HHHhhC
Confidence 6899999999986543 556654
No 4
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=88.94 E-value=0.2 Score=42.25 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEcCCCchHHHH
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYFTDNFTDALV 131 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F~~NFTe~l~ 131 (202)
.+|+|.++|.+++++|++-+++++++||++.+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 93 (344)
T PF12698_consen 61 VEYDSEEEAKDALKNGKIDAIIVIPKNFSQDLL 93 (344)
T ss_dssp EECS-HHHHHHHHHHHT-SEEEEE-TTCCCHCH
T ss_pred eeeCCHHHHHHHHHhCCCcEEEEcCcccccccc
Confidence 478999999999999999999999999988776
No 5
>COG1511 Predicted membrane protein [Function unknown]
Probab=75.79 E-value=2.2 Score=43.18 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEcCCCchHHHHHHH
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYFTDNFTDALVARM 134 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F~~NFTe~l~~R~ 134 (202)
-.|-|.++|.+++++|++-++||+|+|||....--.
T Consensus 85 w~fVs~~~A~~gl~~g~Yya~i~IP~dFS~~a~S~~ 120 (780)
T COG1511 85 WHFVSREEAEKGLKDGKYYAVIYIPKDFSKNALSLT 120 (780)
T ss_pred eEEeCHHHHHhhhhhCceEEEEEecchhhhhhhhcc
Confidence 456799999999999999999999999998776544
No 6
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb
Probab=39.49 E-value=32 Score=25.63 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEc
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYF 122 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F 122 (202)
+.|++.++|+.+++.|+ =+++.-
T Consensus 49 ~~~~~~~~~~~~l~~g~-da~v~d 71 (134)
T smart00079 49 VFVKSYAEGVQRVRVSN-YAFLME 71 (134)
T ss_pred CCCCCHHHHHHHHHcCC-CEEEee
Confidence 47899999999999999 776644
No 7
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=33.71 E-value=26 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.4
Q ss_pred CcCceEeccCChHHHHHHhCC
Q psy17041 1 MRSGRLLAEESPQVLLQTYGC 21 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~~ 21 (202)
|+.|+++..||.++|+++|+-
T Consensus 230 I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 230 IDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred eeCCcEeecccHHHHHHHhCC
Confidence 679999999999999999974
No 8
>PRK11898 prephenate dehydratase; Provisional
Probab=32.29 E-value=37 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEcCC
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYFTD 124 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F~~ 124 (202)
+||++.+++++||..|++ +|+|-.-.
T Consensus 31 ~~~~s~~~v~~av~~~~~d~gvvPiEN 57 (283)
T PRK11898 31 VPYDSIPDVLDAVEAGEVDYAVVPIEN 57 (283)
T ss_pred EecCCHHHHHHHHHcCCCCEEEEEecc
Confidence 588999999999999996 99997644
No 9
>PRK13669 hypothetical protein; Provisional
Probab=31.48 E-value=33 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=16.4
Q ss_pred CcCceEeccCChHHHHHHh
Q psy17041 1 MRSGRLLAEESPQVLLQTY 19 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~ 19 (202)
|-+|++++-.||++|.++.
T Consensus 50 lVng~~V~a~t~eeL~~kI 68 (78)
T PRK13669 50 LVNGEVVEGETPEELVENI 68 (78)
T ss_pred EECCeEeecCCHHHHHHHH
Confidence 3589999999999997765
No 10
>PRK11899 prephenate dehydratase; Provisional
Probab=29.86 E-value=44 Score=29.86 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEcCC
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYFTD 124 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F~~ 124 (202)
+||.+.+++++||.+|++ .|||-+--
T Consensus 31 v~~~s~~~vf~av~~g~~d~gVvPiEN 57 (279)
T PRK11899 31 LPCATFEDAFEAVESGEADLAMIPIEN 57 (279)
T ss_pred eecCCHHHHHHHHHCCCCCEEEEEeec
Confidence 589999999999999996 88887754
No 11
>PLN02317 arogenate dehydratase
Probab=28.82 E-value=46 Score=31.34 Aligned_cols=26 Identities=23% Similarity=0.057 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEcCC
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYFTD 124 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F~~ 124 (202)
+||++.+++++||.+|++ +|||-+-.
T Consensus 121 vp~~sf~~vf~AVe~g~ad~gVvPIEN 147 (382)
T PLN02317 121 VPCEQFEAAFQAVELWLADRAVLPIEN 147 (382)
T ss_pred eecCCHHHHHHHHHCCCCCEEEEEEec
Confidence 789999999999999996 99997754
No 12
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=28.76 E-value=41 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=12.6
Q ss_pred cCceEeccCChHHHHHHhC
Q psy17041 2 RSGRLLAEESPQVLLQTYG 20 (202)
Q Consensus 2 r~Grllaegtp~eL~~~~~ 20 (202)
++|++| +||++++.+.+.
T Consensus 10 ~~g~fl-~Gt~eEqve~fr 27 (70)
T PF04591_consen 10 RKGEFL-EGTTEEQVEMFR 27 (70)
T ss_dssp ETTEEE----HHHHHHHHH
T ss_pred cCCEEe-cCCHHHHHHHHH
Confidence 578888 999999998884
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=28.01 E-value=37 Score=30.12 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=18.6
Q ss_pred CcCceEeccCChHHHHHHhCC
Q psy17041 1 MRSGRLLAEESPQVLLQTYGC 21 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~~ 21 (202)
|++|+++++|++++|+..++.
T Consensus 210 l~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 210 LNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred EeCCEEEEeCCHHHHHHhhcc
Confidence 579999999999999998763
No 14
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=27.97 E-value=41 Score=24.71 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=16.4
Q ss_pred CcCceEeccCChHHHHHHh
Q psy17041 1 MRSGRLLAEESPQVLLQTY 19 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~ 19 (202)
+-+|++++-.||++|.++.
T Consensus 50 lVnG~~V~A~t~eeL~~kI 68 (78)
T PF07293_consen 50 LVNGEIVAAETAEELLEKI 68 (78)
T ss_pred EECCEEEecCCHHHHHHHH
Confidence 3589999999999997765
No 15
>PRK05337 beta-hexosaminidase; Provisional
Probab=25.52 E-value=69 Score=29.29 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.5
Q ss_pred HHHHHHHHcCcEEEEEEcCCCchHH
Q psy17041 105 ESAINAVRVGDAWGALYFTDNFTDA 129 (202)
Q Consensus 105 seA~~avk~G~~WG~I~F~~NFTe~ 129 (202)
.+..+.+++..+.|+|.|+.|++..
T Consensus 15 ~~~~~~i~~~~~gGvilf~~n~~~~ 39 (337)
T PRK05337 15 AEERERLQHPLVGGVILFARNFEDP 39 (337)
T ss_pred HHHHHHHHccCceEEEEECCCCCCH
Confidence 4668889999999999999999653
No 16
>PF11195 DUF2829: Protein of unknown function (DUF2829) ; InterPro: IPR021361 This entry is represented by Bacteriophage 16-3, p046. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.27 E-value=50 Score=23.71 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=8.0
Q ss_pred CHHHHHHHHHcCcE
Q psy17041 103 DPESAINAVRVGDA 116 (202)
Q Consensus 103 s~seA~~avk~G~~ 116 (202)
+..+|++|+|.|+-
T Consensus 2 ~F~eAl~alK~Gkk 15 (75)
T PF11195_consen 2 NFGEALEALKQGKK 15 (75)
T ss_pred CHHHHHHHHHcCCC
Confidence 34566666666554
No 17
>PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure.; InterPro: IPR001086 Prephenate dehydratase (4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate to phenylpyruvate. In microorganisms it is part of the terminal pathway of phenylalanine biosynthesis. In some bacteria such as Escherichia coli PDT is part of a bifunctional enzyme (P-protein) that also catalyses the transformation of chorismate into prephenate (chorismate mutase, IPR002701 from INTERPRO, 5.4.99.5 from EC) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional PDT aligns well with the C-terminal part of P-proteins [].; GO: 0004664 prephenate dehydratase activity, 0009094 L-phenylalanine biosynthetic process; PDB: 3MWB_B 2QMX_A 2QMW_A 3LUY_A.
Probab=23.90 E-value=47 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHcCc-EEEEEEcC
Q psy17041 99 DYYPDPESAINAVRVGD-AWGALYFT 123 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~-~WG~I~F~ 123 (202)
+||++.++++++|.+|+ -+|+|-.-
T Consensus 27 ~~~~s~~~v~~av~~~~~d~~vvPiE 52 (181)
T PF00800_consen 27 VPCDSFEEVFDAVEEGEADYGVVPIE 52 (181)
T ss_dssp EEESSHHHHHHHHHCTSSSEEEEEEE
T ss_pred EecCCHHHHHHHHHcCCCceEEEeEe
Confidence 68999999999999999 68888554
No 18
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=23.49 E-value=48 Score=24.53 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=12.7
Q ss_pred HcCcEEEEEEcC-----CCchHHHH
Q psy17041 112 RVGDAWGALYFT-----DNFTDALV 131 (202)
Q Consensus 112 k~G~~WG~I~F~-----~NFTe~l~ 131 (202)
.+|++||+|.|. ..||++-.
T Consensus 116 ~~g~~~G~l~l~~~~~~~~~~~~d~ 140 (154)
T PF01590_consen 116 SGGRLIGVLSLYRTRPGRPFTEEDL 140 (154)
T ss_dssp ETTEEEEEEEEEEESSSSS--HHHH
T ss_pred cccCcEEEEEEEECCCCCCcCHHHH
Confidence 359999999885 34665543
No 19
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.30 E-value=35 Score=22.09 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=11.2
Q ss_pred CHHHHHHHHHcCc
Q psy17041 103 DPESAINAVRVGD 115 (202)
Q Consensus 103 s~seA~~avk~G~ 115 (202)
++..|+++|++|+
T Consensus 4 ~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 4 DLQKAIEAVKNGK 16 (45)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCC
Confidence 5788999999996
No 20
>KOG0059|consensus
Probab=22.66 E-value=53 Score=33.82 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.1
Q ss_pred CcCceEeccCChHHHHHHhCCC
Q psy17041 1 MRSGRLLAEESPQVLLQTYGCQ 22 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~~~ 22 (202)
|.+|++.+-|+|++|+.+||..
T Consensus 771 mv~G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 771 MVIGQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred eecCeeEEecChHHHHhhcCCc
Confidence 6899999999999999999843
No 21
>PRK06091 membrane protein FdrA; Validated
Probab=21.66 E-value=1e+02 Score=30.56 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCcEEEEEEcCCCchHHHHHHHH
Q psy17041 104 PESAINAVRVGDAWGALYFTDNFTDALVARMV 135 (202)
Q Consensus 104 ~seA~~avk~G~~WG~I~F~~NFTe~l~~R~~ 135 (202)
.+.+.++.++| -++|.|+.||..+++.|+.
T Consensus 131 ~~al~ea~~~G--~~viI~S~gfg~~~E~~L~ 160 (555)
T PRK06091 131 AELAEQALDRN--LNVMMFSDNVTLEDEIRLK 160 (555)
T ss_pred HHHHHHHHHcC--CeEEEEcCCCCHHHHHHHH
Confidence 45677788888 3799999999989988874
No 22
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.23 E-value=55 Score=30.73 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=17.7
Q ss_pred CcCceEeccCChHHHHHHhC
Q psy17041 1 MRSGRLLAEESPQVLLQTYG 20 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~ 20 (202)
|++|+|+-.|||+|+...--
T Consensus 238 mkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 238 MKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ecCCeEEEeCCHHHHHcCcc
Confidence 78999999999999987653
No 23
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=21.18 E-value=56 Score=20.94 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHH--cCcEE
Q psy17041 99 DYYPDPESAINAVR--VGDAW 117 (202)
Q Consensus 99 ~~Y~s~seA~~avk--~G~~W 117 (202)
+-|.+.++|..|++ +|..|
T Consensus 26 V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 26 VEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp EEESSHHHHHHHHHHHTTSEE
T ss_pred EEECCHHHHHHHHHHhCCCEE
Confidence 34789999999998 66654
No 24
>KOG3157|consensus
Probab=21.12 E-value=33 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEcCCCchHHHHHHHH
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYFTDNFTDALVARMV 135 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F~~NFTe~l~~R~~ 135 (202)
.|-+.+-+|+++..+ +|++||-++|.+...
T Consensus 41 KPa~~i~~~Y~~GqR-------~FGENYVQEl~eKap 70 (244)
T KOG3157|consen 41 KPASLIIEAYDAGQR-------HFGENYVQELIEKAP 70 (244)
T ss_pred CcHHHHHHHHHcCcC-------hhhHHHHHHHHHhcc
Confidence 455677788887655 899999999988873
No 25
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=21.10 E-value=54 Score=30.71 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred CcCceEeccCChHHHHHHhCCCCHHHHHH
Q psy17041 1 MRSGRLLAEESPQVLLQTYGCQSLEEVFL 29 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~~~sLEdaFl 29 (202)
|++|++++.|+|++++.. ..|+++|-
T Consensus 212 l~~G~iv~~G~~~ev~~~---~~l~~~~~ 237 (402)
T PRK09536 212 LADGRVRAAGPPADVLTA---DTLRAAFD 237 (402)
T ss_pred EECCEEEEecCHHHHhCc---HHHHHHhC
Confidence 579999999999998653 24777773
No 26
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=21.00 E-value=52 Score=29.21 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=16.9
Q ss_pred CcCceEeccCChHHHHHHh
Q psy17041 1 MRSGRLLAEESPQVLLQTY 19 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~ 19 (202)
|++|++++.|+|+++++..
T Consensus 211 l~~G~i~~~g~~~~l~~~~ 229 (306)
T PRK13537 211 IEEGRKIAEGAPHALIESE 229 (306)
T ss_pred EECCEEEEECCHHHHHhcc
Confidence 5789999999999998764
No 27
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=20.64 E-value=90 Score=29.16 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEc
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYF 122 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F 122 (202)
.||++.+++++||.+|++ .|+|-+
T Consensus 134 ~~~~s~~~v~~av~~g~~d~gVvPi 158 (386)
T PRK10622 134 SGCAKFADIFNQVETGQADYAVLPI 158 (386)
T ss_pred cCCCCHHHHHHHHHCCCCCEEEEEE
Confidence 389999999999999997 888877
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.59 E-value=60 Score=28.55 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=18.1
Q ss_pred CcCceEeccCChHHHHHHhCC
Q psy17041 1 MRSGRLLAEESPQVLLQTYGC 21 (202)
Q Consensus 1 mr~Grllaegtp~eL~~~~~~ 21 (202)
|++|++++.|++++++++++.
T Consensus 197 l~~G~i~~~g~~~~l~~~~~~ 217 (302)
T TIGR01188 197 IDHGRIIAEGTPEELKRRLGK 217 (302)
T ss_pred EECCEEEEECCHHHHHHhcCC
Confidence 578999999999999888653
No 29
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=20.54 E-value=74 Score=33.21 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.1
Q ss_pred cCceEeccCChHHHHHHhCCCCHHHHHHHH
Q psy17041 2 RSGRLLAEESPQVLLQTYGCQSLEEVFLKL 31 (202)
Q Consensus 2 r~Grllaegtp~eL~~~~~~~sLEdaFl~l 31 (202)
+.|.|+|+|||+++++.- .||--.||.-
T Consensus 562 ~GGeIv~~Gtp~~i~~~~--~SlTG~YLsg 589 (935)
T COG0178 562 HGGEIVAEGTPEELLANP--ESLTGQYLSG 589 (935)
T ss_pred CCCEEEEccCHHHHHhCC--cchhhHhhcC
Confidence 689999999999999866 5788888864
Done!