Query psy17041
Match_columns 202
No_of_seqs 189 out of 310
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:18:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cni_A Putative ABC type-2 tra 96.9 0.00041 1.4E-08 54.2 2.3 32 101-132 41-72 (156)
2 4g6c_A Beta-hexosaminidase 1; 47.0 12 0.0004 33.2 3.0 25 103-127 23-47 (348)
3 2p0s_A ABC transporter, permea 45.7 11 0.00039 28.2 2.4 26 100-125 36-62 (143)
4 4gvf_A Beta-hexosaminidase; TI 42.0 14 0.00048 32.7 2.7 24 105-128 15-38 (349)
5 2qmx_A Prephenate dehydratase; 39.1 12 0.00041 32.2 1.8 24 99-122 30-54 (283)
6 2oxn_A Beta-hexosaminidase; TI 38.1 18 0.0006 31.9 2.7 24 105-128 15-38 (340)
7 2qmw_A PDT, prephenate dehydra 34.0 15 0.0005 31.4 1.5 24 99-122 32-56 (267)
8 3mwb_A Prephenate dehydratase; 32.3 17 0.0006 31.7 1.7 27 99-125 35-62 (313)
9 3tev_A Glycosyl hyrolase, fami 31.7 18 0.00062 32.0 1.7 23 105-127 33-55 (351)
10 2v3u_A Glutamate receptor delt 31.4 29 0.001 26.8 2.8 21 99-120 172-192 (265)
11 3luy_A Probable chorismate mut 25.7 25 0.00084 31.0 1.5 25 99-123 41-65 (329)
12 3p3d_A Nucleoporin 53; structu 24.6 52 0.0018 25.4 3.0 50 99-148 67-118 (132)
13 2khf_A PLNJ; anti-microbial, b 24.0 31 0.0011 19.1 1.2 10 186-195 3-12 (26)
14 2cob_A LCOR protein; MLR2, KIA 22.5 23 0.00078 24.6 0.5 14 102-115 17-30 (70)
No 1
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=96.86 E-value=0.00041 Score=54.17 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHcCcEEEEEEcCCCchHHHHH
Q psy17041 101 YPDPESAINAVRVGDAWGALYFTDNFTDALVA 132 (202)
Q Consensus 101 Y~s~seA~~avk~G~~WG~I~F~~NFTe~l~~ 132 (202)
+++.+||.+++++|+++++|+||+||++.|..
T Consensus 41 ~~s~~ea~~~l~~g~~~~~l~IP~~Fs~~l~~ 72 (156)
T 3cni_A 41 GSDLKEAEEAVKKEKAPAIIVIPKGFSQSLES 72 (156)
T ss_dssp ESCHHHHHHHHHHHTCSEEEEECTTHHHHHHH
T ss_pred CCCHHHHHHHHHcCCeeEEEEECcchHHHHhC
Confidence 47999999999999999999999999998874
No 2
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=46.95 E-value=12 Score=33.19 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=22.0
Q ss_pred CHHHHHHHHHcCcEEEEEEcCCCch
Q psy17041 103 DPESAINAVRVGDAWGALYFTDNFT 127 (202)
Q Consensus 103 s~seA~~avk~G~~WG~I~F~~NFT 127 (202)
-.++..+.+++++++|+|.|..|+.
T Consensus 23 l~~~~~~~i~~~~vGGvilf~~n~~ 47 (348)
T 4g6c_A 23 LSRDDARRLAHPNTGGVILFARHFQ 47 (348)
T ss_dssp CCHHHHHHHHSTTEEEEEECGGGCS
T ss_pred CCHHHHHHHHcCCceEEEEcCCCCC
Confidence 3467789999999999999999994
No 3
>2p0s_A ABC transporter, permease protein, putative; APC90123.1, putative ABC transporter, porphyromonas gingiVal structural genomics, PSI-2; 1.60A {Porphyromonas gingivalis} SCOP: c.94.1.3
Probab=45.74 E-value=11 Score=28.17 Aligned_cols=26 Identities=8% Similarity=-0.140 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHH-cCcEEEEEEcCCC
Q psy17041 100 YYPDPESAINAVR-VGDAWGALYFTDN 125 (202)
Q Consensus 100 ~Y~s~seA~~avk-~G~~WG~I~F~~N 125 (202)
.+.+.++|.++++ +|++-|+|+++.+
T Consensus 36 ~~~~~~~ak~~l~~~~~i~g~L~I~~~ 62 (143)
T 2p0s_A 36 AEKTAEEYRKMGADKSGIDAVLEIRQD 62 (143)
T ss_dssp CSSCHHHHHHHHHHHHCCSEEEEECSC
T ss_pred cCCCHHHHHHHhhccCceeEEEEECcc
Confidence 5578999999999 9999999999887
No 4
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=42.02 E-value=14 Score=32.75 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHHHHHHHcCcEEEEEEcCCCchH
Q psy17041 105 ESAINAVRVGDAWGALYFTDNFTD 128 (202)
Q Consensus 105 seA~~avk~G~~WG~I~F~~NFTe 128 (202)
++..+.+++.+++|+|.|+.|+.+
T Consensus 15 ~~~~~~i~~~~vGGvilf~rN~~~ 38 (349)
T 4gvf_A 15 AEEREILAHPLVGGLILFTRNYHD 38 (349)
T ss_dssp HHHHHHHTCTTEEEEEECGGGCSC
T ss_pred HHHHHHHHcCCceEEEEeCCCCCC
Confidence 456889999999999999999964
No 5
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=39.12 E-value=12 Score=32.24 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEc
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYF 122 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F 122 (202)
.||++.+|+++||++|++ +|||-+
T Consensus 30 ~p~~s~~~vf~aV~~g~~d~gVvPi 54 (283)
T 2qmx_A 30 LPCESFDDVFSAVTEQKADYAVIPI 54 (283)
T ss_dssp EEESCHHHHHHHHHTTSCSEEEEEE
T ss_pred CcCCCHHHHHHHHHCCCCCEEEEee
Confidence 588999999999999996 899976
No 6
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=38.06 E-value=18 Score=31.92 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHHHHcCcEEEEEEcCCCchH
Q psy17041 105 ESAINAVRVGDAWGALYFTDNFTD 128 (202)
Q Consensus 105 seA~~avk~G~~WG~I~F~~NFTe 128 (202)
++.++.+++++++|+|.|+.|+.+
T Consensus 15 ~~~~~~i~~~~vGGvilf~rn~~~ 38 (340)
T 2oxn_A 15 AEDREILQHPTVGGVILFGRNYHD 38 (340)
T ss_dssp HHHHHHHTSTTEEEEEECGGGCSC
T ss_pred HHHHHHHhcCCCcEEEEeCCCCCC
Confidence 566888999999999999999864
No 7
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=34.01 E-value=15 Score=31.44 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEc
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYF 122 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F 122 (202)
.||++.+|+++||++|++ +|||-+
T Consensus 32 ~~~~s~~~v~~aV~~g~~d~gVvPi 56 (267)
T 2qmw_A 32 QPKSNLFEVIKAVADDDTSIGVVPI 56 (267)
T ss_dssp EEESSHHHHHHHHHHCSSEEEEEEE
T ss_pred EEcCCHHHHHHHHHcCCCCEEEEEe
Confidence 588999999999999996 888876
No 8
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=32.32 E-value=17 Score=31.71 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEcCCC
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYFTDN 125 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F~~N 125 (202)
.||++.+|+++||++|++ +|||-+-..
T Consensus 35 ~p~~s~~~vf~aV~~g~~d~gVvPiENS 62 (313)
T 3mwb_A 35 IPCTNVNTALERVRAGEADAAMVPIENS 62 (313)
T ss_dssp EEESSHHHHHHHHHTTSCSEEEEEEESC
T ss_pred EecCCHHHHHHHHHcCCCCeeEEEEeec
Confidence 588999999999999997 899977443
No 9
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=31.72 E-value=18 Score=31.99 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHcCcEEEEEEcCCCch
Q psy17041 105 ESAINAVRVGDAWGALYFTDNFT 127 (202)
Q Consensus 105 seA~~avk~G~~WG~I~F~~NFT 127 (202)
++..+.+++++++|+|.|+.|+.
T Consensus 33 ~~~~~~i~~~~vGGvilf~~n~~ 55 (351)
T 3tev_A 33 KDTAAYLREHGIGAVCLFGKNVE 55 (351)
T ss_dssp HHHHHHHHHHTCCEEEECGGGCS
T ss_pred HHHHHHHHcCCceEEEEeCCCCC
Confidence 55778999999999999999984
No 10
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=31.42 E-value=29 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHcCcEEEEE
Q psy17041 99 DYYPDPESAINAVRVGDAWGAL 120 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I 120 (202)
.+|++.+++++++++|++ +++
T Consensus 172 ~~~~~~~~~~~~l~~G~~-a~~ 192 (265)
T 2v3u_A 172 NNVLESQAGIQKVKYGNY-AFV 192 (265)
T ss_dssp CCBSSHHHHHHHHHHSSC-EEE
T ss_pred cccCCHHHHHHHHHcCCE-EEE
Confidence 378899999999999999 655
No 11
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=25.67 E-value=25 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEcC
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYFT 123 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F~ 123 (202)
.||++.+++++||++|+-+|||-+-
T Consensus 41 ~p~~s~~~vf~aV~~g~d~gVVPIE 65 (329)
T 3luy_A 41 MPMDDVPQILDAAQHGDGWGIVAWE 65 (329)
T ss_dssp EEESSHHHHHHHHHHTSSEEEEEEE
T ss_pred EeCCCHHHHHHHHHcCCCEEEEEEc
Confidence 5889999999999999999999763
No 12
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=24.61 E-value=52 Score=25.45 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHc-CcEE-EEEEcCCCchHHHHHHHHhCCCCCccccccc
Q psy17041 99 DYYPDPESAINAVRV-GDAW-GALYFTDNFTDALVARMVLGRDADEETLDQS 148 (202)
Q Consensus 99 ~~Y~s~seA~~avk~-G~~W-G~I~F~~NFTe~l~~R~~~g~~a~de~i~~S 148 (202)
.-|+|..+|.+|+++ |++. |.+..-.=|+++-++.++.-.-.+.++|-.+
T Consensus 67 ItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~~ve~l~~~~~~~~~dig~~ 118 (132)
T 3p3d_A 67 ITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVERLQKRKLTSSEDIGSG 118 (132)
T ss_dssp EEBSSHHHHHHHHTTTTCEETTEECEEEECCHHHHHHHC-------------
T ss_pred EEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHHHHHHHhcCCcccccccccc
Confidence 579999999999865 4443 2333333457888888876666666666554
No 13
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=24.00 E-value=31 Score=19.13 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=8.4
Q ss_pred hhhHHHHhHh
Q psy17041 186 QKNFLRMWRN 195 (202)
Q Consensus 186 ~Knf~~m~Rn 195 (202)
||||+..+|.
T Consensus 3 wknfwsslrk 12 (26)
T 2khf_A 3 WKNFWSSLRK 12 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8999988874
No 14
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=22.45 E-value=23 Score=24.64 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHcCc
Q psy17041 102 PDPESAINAVRVGD 115 (202)
Q Consensus 102 ~s~seA~~avk~G~ 115 (202)
+++++|++||++|+
T Consensus 17 ~~L~~Ai~aVr~g~ 30 (70)
T 2cob_A 17 EILEEAISVVMSGK 30 (70)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 48899999999995
Done!