Query psy17041
Match_columns 202
No_of_seqs 189 out of 310
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 20:18:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tksa_ d.115.1.2 (A:) 3,4-dih 26.8 21 0.0015 27.4 3.1 21 100-120 2-22 (202)
2 d2qmwa1 c.94.1.1 (A:1-184) Pre 26.2 12 0.00085 28.2 1.5 25 99-123 29-54 (184)
3 d1k4ia_ d.115.1.2 (A:) 3,4-dih 24.9 22 0.0016 27.6 2.9 20 101-120 1-20 (216)
4 d1tr9a_ c.1.8.7 (A:) Beta-hexo 22.5 22 0.0016 28.7 2.7 24 105-128 16-39 (330)
5 d1pb7a_ c.94.1.1 (A:) N-methyl 18.5 30 0.0022 25.9 2.5 24 99-122 198-221 (289)
6 d1g57a_ d.115.1.2 (A:) 3,4-dih 17.2 15 0.0011 28.5 0.3 23 98-120 6-28 (209)
7 d1wwha1 d.58.7.1 (A:169-249) N 14.8 24 0.0018 22.5 0.9 19 99-117 44-63 (81)
8 d1snna_ d.115.1.2 (A:) 3,4-dih 14.2 38 0.0027 26.1 2.1 19 102-120 1-19 (219)
9 d2cpia1 d.58.7.1 (A:101-189) E 13.3 29 0.0021 22.1 1.0 19 99-117 61-81 (89)
10 d1xhca3 d.87.1.1 (A:290-351) N 13.1 31 0.0022 21.7 1.0 13 112-124 42-54 (62)
No 1
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=26.84 E-value=21 Score=27.39 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHcCcEEEEE
Q psy17041 100 YYPDPESAINAVRVGDAWGAL 120 (202)
Q Consensus 100 ~Y~s~seA~~avk~G~~WG~I 120 (202)
.|+++++|+++.|+|+.+=++
T Consensus 2 ~~~~ie~ai~~l~~G~~Viv~ 22 (202)
T d1tksa_ 2 IFTPIEEALEAYKNGEFLIVM 22 (202)
T ss_dssp CSCCHHHHHHHHHTTCCEEEE
T ss_pred CcccHHHHHHHHHCCCEEEEE
Confidence 689999999999999988654
No 2
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]}
Probab=26.16 E-value=12 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHcCcE-EEEEEcC
Q psy17041 99 DYYPDPESAINAVRVGDA-WGALYFT 123 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~-WG~I~F~ 123 (202)
.||.+.+|++++|.+|++ .|+|-+-
T Consensus 29 ~~~~s~~~v~~av~~~~~d~gvvPiE 54 (184)
T d2qmwa1 29 QPKSNLFEVIKAVADDDTSIGVVPIE 54 (184)
T ss_dssp EEESSHHHHHHHHHHCSSEEEEEEEE
T ss_pred eecCCHHHHHHHHHcCCCceeEEEee
Confidence 478999999999999997 6888643
No 3
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=24.89 E-value=22 Score=27.56 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHcCcEEEEE
Q psy17041 101 YPDPESAINAVRVGDAWGAL 120 (202)
Q Consensus 101 Y~s~seA~~avk~G~~WG~I 120 (202)
|+++++|+++.|+|+.+=++
T Consensus 1 f~~ie~ai~~l~~G~~viv~ 20 (216)
T d1k4ia_ 1 FDAIPDVIQAFKNGEFVVVL 20 (216)
T ss_dssp CCCHHHHHHHHHTTCCEEEE
T ss_pred CCcHHHHHHHHHCCCeEEEE
Confidence 78999999999999988554
No 4
>d1tr9a_ c.1.8.7 (A:) Beta-hexosaminidase NagZ {Vibrio cholerae [TaxId: 666]}
Probab=22.55 E-value=22 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHcCcEEEEEEcCCCchH
Q psy17041 105 ESAINAVRVGDAWGALYFTDNFTD 128 (202)
Q Consensus 105 seA~~avk~G~~WG~I~F~~NFTe 128 (202)
++.++-+++.++.|+|.|+.|+.+
T Consensus 16 ~~~~~~i~~~~~gGvilf~~N~~~ 39 (330)
T d1tr9a_ 16 AEDREILQHPTVGGVILFGRNYHD 39 (330)
T ss_dssp HHHHHHHTSTTEEEEEECGGGCSC
T ss_pred HHHHHHHhcCCCcEEEEeCCCCCC
Confidence 566788999999999999998864
No 5
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.48 E-value=30 Score=25.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHcCcEEEEEEc
Q psy17041 99 DYYPDPESAINAVRVGDAWGALYF 122 (202)
Q Consensus 99 ~~Y~s~seA~~avk~G~~WG~I~F 122 (202)
..|++..+|++++..|++-+++.=
T Consensus 198 ~~~~~~~~~~~~l~~g~~da~i~d 221 (289)
T d1pb7a_ 198 HNYESAAEAIQAVRDNKLHAFIWD 221 (289)
T ss_dssp TCBSSHHHHHHHHHTTSCSEEEEE
T ss_pred EEcCCHHHHHHHHhCCCeEEEEeh
Confidence 789999999999999999988853
No 6
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]}
Probab=17.20 E-value=15 Score=28.46 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHcCcEEEEE
Q psy17041 98 DDYYPDPESAINAVRVGDAWGAL 120 (202)
Q Consensus 98 ~~~Y~s~seA~~avk~G~~WG~I 120 (202)
..+|+++++|+++.|+|+.+=++
T Consensus 6 ~~~~~~ie~ai~alk~G~~Viv~ 28 (209)
T d1g57a_ 6 GTPFERVENALAALREGRGVMVL 28 (209)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCchhhHHHHHHHHHCCCEEEEE
Confidence 35788999999999999988553
No 7
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.76 E-value=24 Score=22.52 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHH-cCcEE
Q psy17041 99 DYYPDPESAINAVR-VGDAW 117 (202)
Q Consensus 99 ~~Y~s~seA~~avk-~G~~W 117 (202)
+-|.+.++|..|++ +|+..
T Consensus 44 V~f~~~~~A~~Al~~nG~~~ 63 (81)
T d1wwha1 44 IRYQSKLQARKALSKDGRIF 63 (81)
T ss_dssp EEESSHHHHHHHHTTTTCEE
T ss_pred EEEcccHHHHHHHhcCCCeE
Confidence 46899999999987 45543
No 8
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=14.17 E-value=38 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHcCcEEEEE
Q psy17041 102 PDPESAINAVRVGDAWGAL 120 (202)
Q Consensus 102 ~s~seA~~avk~G~~WG~I 120 (202)
||+++|+++.|+|+.+=++
T Consensus 1 d~ie~ai~~lk~G~~Viv~ 19 (219)
T d1snna_ 1 NNVEKAIEALKKGEIILVY 19 (219)
T ss_dssp CHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHCCCEEEEE
Confidence 5789999999999988664
No 9
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.33 E-value=29 Score=22.08 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHH--cCcEE
Q psy17041 99 DYYPDPESAINAVR--VGDAW 117 (202)
Q Consensus 99 ~~Y~s~seA~~avk--~G~~W 117 (202)
+-|.+.++|..|++ +|..+
T Consensus 61 V~f~~~~~A~~Ai~~lng~~~ 81 (89)
T d2cpia1 61 VTYIRSEDALRAIQCVNNVVV 81 (89)
T ss_dssp EEESSHHHHHHHHHHHTTEEE
T ss_pred EecccchhHHHHHHHhCCCEE
Confidence 67899999999986 56544
No 10
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=13.11 E-value=31 Score=21.71 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=6.9
Q ss_pred HcCcEEEEEEcCC
Q psy17041 112 RVGDAWGALYFTD 124 (202)
Q Consensus 112 k~G~~WG~I~F~~ 124 (202)
++||+.|+++|+.
T Consensus 42 ~d~KiiGaVV~~D 54 (62)
T d1xhca3 42 ENGKIIGAVVFND 54 (62)
T ss_dssp -----CEEEEESC
T ss_pred eCCcEEEEEEehh
Confidence 3469999999874
Done!