RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17041
         (202 letters)



>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 238

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 1   MRSGRLLAEESPQVLLQTYGCQSLEEVFLKLSR 33
           + +G ++   + + L + Y  Q++EEVF ++ +
Sbjct: 206 IHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 238


>d1o26a_ d.207.1.1 (A:) Thy1 homologue {Thermotoga maritima [TaxId:
           2336]}
          Length = 219

 Score = 25.8 bits (56), Expect = 3.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 86  EILIQDHSNGHYDDYYPDPESAINAVRV 113
           +I I D       D   +  SA+ A RV
Sbjct: 4   KIDILDKGFVELVDVMGNDLSAVRAARV 31


>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
          thermophilus [TaxId: 274]}
          Length = 126

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 73 ESGVVGLMFHQSKEILIQDHSNGHYD 98
          E G  G++F+  +E+L+     G + 
Sbjct: 2  ELGAGGVVFNAKREVLLLRDRMGFWV 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 734,305
Number of extensions: 31637
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 6
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)