BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17042
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum
GN=abcG20 PE=3 SV=1
Length = 730
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 32/208 (15%)
Query: 21 CDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEP-IYGSNDPSFTDFVAP 79
+ QI L++ + L LS+ A+ Q I PI+ P +YG+ + F DF+AP
Sbjct: 474 TNYQITLIVEQQLALSFETLAK-------QQANITMNPIKTVTPTVYGNPNSKFIDFLAP 526
Query: 80 GVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALV 139
G++ I F A+++TS + + E+++G LDR + GV I+F H + ++ Q ++
Sbjct: 527 GMVCLISFAHAISITSVSFVKEKVDGSLDRLFAYGVRTSSIVFGHFLGHLPLLLVQITVL 586
Query: 140 LIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFV 199
L+ I+ F V +G++ LV ++T+ + FV GM G V
Sbjct: 587 LLIAIYGFNVPIEGNIALVFLMTV-----SLAFV-------------------GMSLGLV 622
Query: 200 ISAICELERNAIQLALGSFYPTLLLSGC 227
ISA+ +E AIQL+LG ++PTL+ SG
Sbjct: 623 ISAVSRVETEAIQLSLGVYFPTLICSGT 650
>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum
GN=abcG23 PE=3 SV=2
Length = 701
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 37/212 (17%)
Query: 24 QIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVIL 83
Q+ LM++ Q ++ A D I +P F +YG + +F F+AP +I
Sbjct: 450 QMNLMVDVQFQKAFNKIAND--------SGIKLLPTNF-HAVYGDQNANFNWFLAPAMIC 500
Query: 84 TIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM 143
I + + S + E+ +G DR + GV+P+ + H++ ++ Q ++ L+
Sbjct: 501 IITYVHCMNFLSITFVREKNDGTRDRILLYGVSPVSNVLGHILAHIPILLVQFSIQLLIA 560
Query: 144 IFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAI 203
+F FGV KG+++L+ L ++I T+ GMC G +IS I
Sbjct: 561 VFAFGVPIKGNIVLIY-------------------LFFILINTV-----GMCQGILISLI 596
Query: 204 CELERNAIQLALGSFYPTLLLSGCFKNMVYPV 235
+ E +A+QL L F +L ++G +++P
Sbjct: 597 SKAEVDAVQLCLAIFICSLCMAG----IIWPT 624
>sp|P0AFQ1|YBHR_SHIFL Inner membrane transport permease YbhR OS=Shigella flexneri GN=ybhR
PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 33 LQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVA 92
LQ +++ Q+LL + PK + + + + + + + FV P +I I +
Sbjct: 136 LQQIVKNYQQELL---EGKPKPNNSELVVRN--WYNPNLDYKWFVVPSLIAMITTIGVMI 190
Query: 93 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK 152
+TS ++ ER +G LD+ V+ +T +I + +V Q +VL I+ + +
Sbjct: 191 VTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFA 250
Query: 153 GDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQ 212
G L L ++ GL L G FG +IS++C ++ A
Sbjct: 251 GSLALFYFTMVIYGLS----------------------LVG--FGLLISSLCSTQQQAF- 285
Query: 213 LALGSF---YPTLLLSG 226
+G F P +LLSG
Sbjct: 286 --IGVFVFMMPAILLSG 300
>sp|P0AFP9|YBHR_ECOLI Inner membrane transport permease YbhR OS=Escherichia coli (strain
K12) GN=ybhR PE=1 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 33 LQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVA 92
LQ +++ Q+LL + PK + + + + + + + FV P +I I +
Sbjct: 136 LQQIVKNYQQELL---EGKPKPNNSELVVRN--WYNPNLDYKWFVVPSLIAMITTIGVMI 190
Query: 93 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK 152
+TS ++ ER +G LD+ V+ +T +I + +V Q +VL I+ + +
Sbjct: 191 VTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFA 250
Query: 153 GDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQ 212
G L L ++ GL L G FG +IS++C ++ A
Sbjct: 251 GSLALFYFTMVIYGLS----------------------LVG--FGLLISSLCSTQQQAF- 285
Query: 213 LALGSF---YPTLLLSG 226
+G F P +LLSG
Sbjct: 286 --IGVFVFMMPAILLSG 300
>sp|P0AFQ0|YBHR_ECO57 Inner membrane transport permease YbhR OS=Escherichia coli O157:H7
GN=ybhR PE=3 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 35/197 (17%)
Query: 33 LQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVA 92
LQ +++ Q+LL + PK + + + + + + + FV P +I I +
Sbjct: 136 LQQIVKNYQQELL---EGKPKPNNSELVVRN--WYNPNLDYKWFVVPSLIAMITTIGVMI 190
Query: 93 LTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK 152
+TS ++ ER +G LD+ V+ +T +I + +V Q +VL I+ + +
Sbjct: 191 VTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGIWAYQIPFA 250
Query: 153 GDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQ 212
G L L ++ GL L G FG +IS++C ++ A
Sbjct: 251 GSLALFYFTMVIYGLS----------------------LVG--FGLLISSLCSTQQQAF- 285
Query: 213 LALGSF---YPTLLLSG 226
+G F P +LLSG
Sbjct: 286 --IGVFVFMMPAILLSG 300
>sp|P0AGH2|YHHJ_SHIFL Inner membrane transport permease YhhJ OS=Shigella flexneri GN=yhhJ
PE=3 SV=3
Length = 374
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 37 YRDFAQDLLSTCDQ---NPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVAL 93
YRD ++ L+S + NP + DP++ F I+ + LA+ L
Sbjct: 151 YRDNSEPLVSLETRMRFNPNL---------------DPAW--FGGVMAIINNITMLAIVL 193
Query: 94 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI-FVFGVECK 152
T SALI ER G ++ V +TP EI+ + + + +V+ + L L+ M+ V GV +
Sbjct: 194 TGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIE 253
Query: 153 GDLLLVII 160
G + L ++
Sbjct: 254 GSIPLFML 261
>sp|P0AGH1|YHHJ_ECOLI Inner membrane transport permease YhhJ OS=Escherichia coli (strain
K12) GN=yhhJ PE=1 SV=3
Length = 374
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 37 YRDFAQDLLSTCDQ---NPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVAL 93
YRD ++ L+S + NP + DP++ F I+ + LA+ L
Sbjct: 151 YRDNSEPLVSLETRMRFNPNL---------------DPAW--FGGVMAIINNITMLAIVL 193
Query: 94 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI-FVFGVECK 152
T SALI ER G ++ V +TP EI+ + + + +V+ + L L+ M+ V GV +
Sbjct: 194 TGSALIREREHGTVEHLLVMPITPFEIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIE 253
Query: 153 GDLLLVII 160
G + L ++
Sbjct: 254 GSIPLFML 261
>sp|P0AFQ2|YBHS_ECOLI Inner membrane transport permease YbhS OS=Escherichia coli (strain
K12) GN=ybhS PE=1 SV=1
Length = 377
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 75 DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134
F+ PG + I+ + LTS + E G ++ +T E+L +I + +
Sbjct: 181 HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGML 240
Query: 135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGM 194
L ++ +F+ GV +G LL++ ++ L L GM
Sbjct: 241 AMLLCMLVSVFILGVPYRGSLLILFFISSL----------------------FLLSTLGM 278
Query: 195 CFGFVISAICELERNAIQLAL-GSFYPTLLLSG 226
G +IS I + NA Q+AL +F P+++LSG
Sbjct: 279 --GLLISTITRNQFNAAQVALNAAFLPSIMLSG 309
>sp|P0AFQ3|YBHS_ECOL6 Inner membrane transport permease YbhS OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ybhS PE=3 SV=1
Length = 377
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 75 DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134
F+ PG + I+ + LTS + E G ++ +T E+L +I + +
Sbjct: 181 HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGML 240
Query: 135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGM 194
L ++ +F+ GV +G LL++ ++ L L GM
Sbjct: 241 AMLLCMLVSVFILGVPYRGSLLILFFISSL----------------------FLLSTLGM 278
Query: 195 CFGFVISAICELERNAIQLAL-GSFYPTLLLSG 226
G +IS I + NA Q+AL +F P+++LSG
Sbjct: 279 --GLLISTITRNQFNAAQVALNAAFLPSIMLSG 309
>sp|P0AFQ4|YBHS_ECO57 Inner membrane transport permease YbhS OS=Escherichia coli O157:H7
GN=ybhS PE=3 SV=1
Length = 377
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 25/153 (16%)
Query: 75 DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134
F+ PG + I+ + LTS + E G ++ +T E+L +I + +
Sbjct: 181 HFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYFLGML 240
Query: 135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGM 194
L ++ +F+ GV +G LL++ ++ L L GM
Sbjct: 241 AMLLCMLVSVFILGVPYRGSLLILFFISSL----------------------FLLSTLGM 278
Query: 195 CFGFVISAICELERNAIQLAL-GSFYPTLLLSG 226
G +IS I + NA Q+AL +F P+++LSG
Sbjct: 279 --GLLISTITRNQFNAAQVALNAAFLPSIMLSG 309
>sp|P58352|GTR3_BOVIN Solute carrier family 2, facilitated glucose transporter member 3
OS=Bos taurus GN=SLC2A3 PE=2 SV=1
Length = 494
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGL-CGMCFGFVISAICELERNA 210
+G+ +L++ L + G C M F + + ++I+ ++ GL CG+C GFV I E+ A
Sbjct: 90 RGNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTA 149
Query: 211 IQLALGS 217
++ A G+
Sbjct: 150 LRGAFGT 156
>sp|P32037|GTR3_MOUSE Solute carrier family 2, facilitated glucose transporter member 3
OS=Mus musculus GN=Slc2a3 PE=1 SV=1
Length = 493
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGL-CGMCFGFVISAICELERNA 210
+ +LLV +L I+ G C M F + + ++I+ +L G+ CG+C GFV I E+ A
Sbjct: 91 RNSMLLVNLLAIIAG-CLMGFAKIAESVEMLILGRLLIGIFCGLCTGFVPMYIGEVSPTA 149
Query: 211 IQLALGS 217
++ A G+
Sbjct: 150 LRGAFGT 156
>sp|Q07647|GTR3_RAT Solute carrier family 2, facilitated glucose transporter member 3
OS=Rattus norvegicus GN=Slc2a3 PE=1 SV=1
Length = 493
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGL-CGMCFGFVISAICELERNA 210
+ +LLV ++ IL G C M F + + ++I+ ++ G+ CG+C GFV I E+ A
Sbjct: 91 RNSMLLVNLIAILGG-CLMGFAKIAESVEMLILGRLIIGIFCGLCTGFVPMYIGEVSPTA 149
Query: 211 IQLALGS 217
++ A G+
Sbjct: 150 LRGAFGT 156
>sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3
OS=Canis familiaris GN=SLC2A3 PE=2 SV=1
Length = 495
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 117 PLEILFSHVITQFVVMCGQTALVLIFMI--FVFGVECKGDLLLVIILTILQGLCGMCFVE 174
P E+L + + + V + ++ F + FV + +L+V +L + G C M F +
Sbjct: 54 PTEVLLTSLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMVNLLAVAGG-CLMGFCK 112
Query: 175 CKGDLLLVIILTILQGL-CGMCFGFVISAICELERNAIQLALGS 217
+ ++I+ ++ GL CG+C GFV I E+ A++ A G+
Sbjct: 113 IAQSVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTALRGAFGT 156
>sp|P47843|GTR3_SHEEP Solute carrier family 2, facilitated glucose transporter member 3
OS=Ovis aries GN=SLC2A3 PE=2 SV=1
Length = 494
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGL-CGMCFGFVISAICELERNA 210
+ + +L++ L + G C M F + + ++I+ ++ GL CG+C GFV I E+ A
Sbjct: 90 RRNSMLIVNLLAIAGGCLMGFCKIAESVEMLILGRLIIGLFCGLCTGFVPMYIGEISPTA 149
Query: 211 IQLALGS 217
++ A G+
Sbjct: 150 LRGAFGT 156
>sp|Q8TDB8|GTR14_HUMAN Solute carrier family 2, facilitated glucose transporter member 14
OS=Homo sapiens GN=SLC2A14 PE=2 SV=1
Length = 520
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 113 AGVTPLEILFSHVITQFVVMCGQTALVLIFMI--FVFGVECKGDLLLVIILTILQG-LCG 169
A P E+L +++ + V + ++ F + FV + +L+V +L G L G
Sbjct: 74 ANAPPSEVLLTNLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAATGGCLMG 133
Query: 170 MCFVECKGDLLLVIILTILQGL-CGMCFGFVISAICELERNAIQLALGS 217
+C + ++L++ L I GL CG+C GFV I E+ A++ A G+
Sbjct: 134 LCKIAESVEMLILGRLVI--GLFCGLCTGFVPMYIGEISPTALRGAFGT 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.145 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,734,516
Number of Sequences: 539616
Number of extensions: 3325031
Number of successful extensions: 9331
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 9311
Number of HSP's gapped (non-prelim): 36
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)