Query psy17042
Match_columns 261
No_of_seqs 192 out of 1936
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01291 nodJ ABC-2 type tran 99.9 7.8E-21 1.7E-25 168.2 19.4 158 70-256 53-211 (253)
2 TIGR01248 drrC daunorubicin re 99.9 1.8E-20 4E-25 153.8 17.3 138 91-255 5-142 (152)
3 TIGR00025 Mtu_efflux ABC trans 99.8 7.2E-20 1.6E-24 159.6 18.6 156 72-256 33-191 (232)
4 TIGR01247 drrB daunorubicin re 99.8 2.9E-18 6.3E-23 149.5 19.0 156 70-255 43-198 (236)
5 PRK15066 inner membrane transp 99.8 8.4E-18 1.8E-22 148.9 19.9 157 70-255 56-212 (257)
6 TIGR03861 phenyl_ABC_PedC alco 99.8 1.4E-17 3.1E-22 146.9 19.3 156 70-255 55-214 (253)
7 COG0842 ABC-type multidrug tra 99.8 6E-16 1.3E-20 135.7 23.8 161 67-255 80-241 (286)
8 PF12698 ABC2_membrane_3: ABC- 99.7 4.1E-19 8.9E-24 159.1 2.1 218 4-256 90-311 (344)
9 TIGR03062 pip_yhgE_Cterm YhgE/ 99.7 1.2E-16 2.5E-21 136.9 16.6 164 55-256 4-167 (208)
10 TIGR03518 ABC_perm_GldF glidin 99.5 1.8E-12 3.9E-17 114.1 17.8 140 90-257 65-209 (240)
11 PF01061 ABC2_membrane: ABC-2 99.4 2.4E-14 5.3E-19 120.6 -3.6 131 96-255 71-202 (210)
12 COG1668 NatB ABC-type Na+ effl 99.3 3.3E-10 7.2E-15 106.9 18.9 125 75-215 187-316 (407)
13 PF12679 ABC2_membrane_2: ABC- 99.0 8.2E-09 1.8E-13 91.2 14.9 112 89-221 81-199 (277)
14 PF03379 CcmB: CcmB protein; 98.8 1.5E-07 3.3E-12 81.5 15.4 130 70-224 40-173 (215)
15 TIGR00955 3a01204 The Eye Pigm 98.8 3.5E-07 7.7E-12 90.8 17.1 128 103-257 418-546 (617)
16 TIGR01190 ccmB heme exporter p 98.7 7.2E-07 1.6E-11 77.0 15.1 85 70-154 37-121 (211)
17 PLN03211 ABC transporter G-25; 98.7 6.9E-07 1.5E-11 89.3 16.8 124 103-256 464-589 (659)
18 COG1277 NosY ABC-type transpor 98.7 6.2E-07 1.4E-11 79.7 14.9 116 89-224 74-192 (278)
19 TIGR00956 3a01205 Pleiotropic 98.6 1.4E-06 3.1E-11 93.6 16.3 126 103-256 478-605 (1394)
20 PLN03140 ABC transporter G fam 98.5 4.2E-06 9E-11 90.2 18.2 125 105-257 1275-1401(1470)
21 PLN03140 ABC transporter G fam 98.5 4.5E-06 9.8E-11 90.0 18.0 114 115-256 608-722 (1470)
22 COG1682 TagG ABC-type polysacc 98.5 1E-05 2.2E-10 72.3 17.4 157 65-255 60-216 (263)
23 TIGR00956 3a01205 Pleiotropic 98.4 7.5E-06 1.6E-10 88.1 16.1 113 116-256 1169-1289(1394)
24 PF12730 ABC2_membrane_4: ABC- 98.3 0.00022 4.7E-09 59.6 18.8 110 89-219 61-175 (232)
25 COG2386 CcmB ABC-type transpor 98.3 2.4E-05 5.3E-10 66.6 12.7 83 69-151 42-124 (221)
26 KOG0065|consensus 98.2 3.9E-05 8.5E-10 80.3 16.7 117 114-258 529-646 (1391)
27 KOG0061|consensus 98.2 5.6E-05 1.2E-09 75.1 17.0 123 98-255 419-541 (613)
28 PRK15176 Vi polysaccharide exp 98.0 0.00056 1.2E-08 61.1 16.7 63 189-255 158-220 (264)
29 PF06182 ABC2_membrane_6: ABC- 97.6 0.0029 6.3E-08 54.9 15.1 127 95-254 51-182 (229)
30 TIGR01257 rim_protein retinal- 97.5 0.007 1.5E-07 67.6 19.0 121 74-220 651-771 (2272)
31 COG4200 Uncharacterized protei 97.5 0.007 1.5E-07 52.5 14.8 107 95-224 72-181 (239)
32 KOG0065|consensus 97.4 0.00066 1.4E-08 71.5 8.8 115 116-258 1195-1310(1391)
33 TIGR03733 lanti_perm_MutG lant 97.3 0.039 8.5E-07 48.6 17.9 105 90-216 60-167 (248)
34 PF12051 DUF3533: Protein of u 97.3 0.12 2.6E-06 48.6 22.0 111 112-255 236-351 (382)
35 COG4587 ABC-type uncharacteriz 97.1 0.075 1.6E-06 46.8 17.6 141 89-255 75-218 (268)
36 PF13346 ABC2_membrane_5: ABC- 96.5 0.42 9.1E-06 39.9 17.7 48 96-143 54-101 (206)
37 TIGR03732 lanti_perm_MutE lant 96.4 0.26 5.7E-06 43.3 16.0 49 92-140 57-105 (241)
38 TIGR01257 rim_protein retinal- 96.1 0.38 8.3E-06 54.4 18.7 94 96-214 1699-1795(2272)
39 COG1511 Predicted membrane pro 96.1 0.089 1.9E-06 54.0 13.1 161 55-255 564-724 (780)
40 COG3559 TnrB3 Putative exporte 96.0 0.43 9.2E-06 45.4 15.7 125 98-254 371-498 (536)
41 KOG0059|consensus 87.8 7.1 0.00015 40.9 12.0 96 94-214 315-410 (885)
42 PF09847 DUF2074: Predicted pe 84.8 29 0.00063 33.5 13.7 46 98-145 314-359 (449)
43 COG3559 TnrB3 Putative exporte 47.9 2.7E+02 0.0059 27.1 11.4 50 99-149 107-156 (536)
44 TIGR01654 bact_immun_7tm bacte 44.9 3.1E+02 0.0068 27.8 11.7 26 95-123 186-211 (679)
45 PF03739 YjgP_YjgQ: Predicted 44.3 2E+02 0.0043 26.0 9.5 62 72-133 46-107 (354)
46 COG0795 Predicted permeases [G 42.0 1.8E+02 0.0039 26.7 8.9 62 73-134 53-114 (364)
47 PRK15071 lipopolysaccharide AB 38.9 1.8E+02 0.0039 26.6 8.3 61 73-133 53-113 (356)
48 PRK15120 lipopolysaccharide AB 34.7 3.1E+02 0.0067 25.2 9.2 56 73-128 51-106 (366)
49 COG3763 Uncharacterized protei 21.8 1.7E+02 0.0037 20.8 3.8 18 184-201 8-25 (71)
50 PF09847 DUF2074: Predicted pe 21.5 7.4E+02 0.016 23.9 14.9 32 94-125 48-80 (449)
No 1
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.87 E-value=7.8e-21 Score=168.16 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=132.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSS-ALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG 148 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~-~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g 148 (261)
+.+|.+|++||++.+..+..+...+.. .+.+|||+|++||++.+|+++.++++||.+...+.+.++..++..+. ..+|
T Consensus 53 g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~-~~~g 131 (253)
T TIGR01291 53 GVSYAAFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVT-ATLG 131 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 457999999999999877766544443 57899999999999999999999999999999999988887665544 4566
Q ss_pred ccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Q psy17042 149 VECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCF 228 (261)
Q Consensus 149 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~ 228 (261)
.....++.... ...+++.+++.++|++++.+.|+.+++..+.+++..|++++||+
T Consensus 132 ~~~~~~~l~~~------------------------~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~- 186 (253)
T TIGR01291 132 YIEWWSLIYIL------------------------PVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGV- 186 (253)
T ss_pred hchhhhHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 55444443333 45556778888999999999999999999999999999999999
Q ss_pred CCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 229 KNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 229 ~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
+||.+.+|+|+|.++++.|++|..-
T Consensus 187 ---~~P~~~mP~~lq~i~~~nPlt~~v~ 211 (253)
T TIGR01291 187 ---VFPVFQLNDVIQGMTHFLPLAHSID 211 (253)
T ss_pred ---hcCHHhChHHHHHHHHHCcHHHHHH
Confidence 9999999999999999999999753
No 2
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.86 E-value=1.8e-20 Score=153.85 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccc
Q psy17042 91 VALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGM 170 (261)
Q Consensus 91 ~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 170 (261)
.+.++..+.+|||+|++||++++|++|+++++||.+...++++++..++++++ ..+|++..+++....
T Consensus 5 ~~~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~-~~~g~~~~~~~~~~~----------- 72 (152)
T TIGR01248 5 SLFNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA-LALGFRFRNGVAAAL----------- 72 (152)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcHHHHH-----------
Confidence 34566778999999999999999999999999999999999999999988888 467999887654433
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhh
Q psy17042 171 CFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLA 250 (261)
Q Consensus 171 ~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p 250 (261)
..+.+..+..+++.++|..++...|+++... ..+++.+|+.++||. ++|++.||+|+|+++++.|
T Consensus 73 ----------~~~~~~~l~~~~f~~l~~~~a~~~~~~~~~~-~~~~v~~pl~flsg~----~~P~~~mP~wlq~ia~~~P 137 (152)
T TIGR01248 73 ----------LFLLIPSIFGIAFAALVMAMALRKEGRFAME-ALELAQAAAAFLNPG----ATPIKLFPDWAQPLIAHQP 137 (152)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhhh----hcCHHhCcHHHHHHHhhCC
Confidence 1113444556667777777777777765544 457788999999999 9999999999999999999
Q ss_pred hhhhh
Q psy17042 251 LGSFY 255 (261)
Q Consensus 251 ~~~~~ 255 (261)
++|..
T Consensus 138 lt~~~ 142 (152)
T TIGR01248 138 ISPAI 142 (152)
T ss_pred ccHHH
Confidence 99975
No 3
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.85 E-value=7.2e-20 Score=159.59 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=124.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy17042 72 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC 151 (261)
Q Consensus 72 ~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~ 151 (261)
++.+|++|+.+.+.....+....+..+.+|||+|++||++.+|++++++++||.+...+....+..+.... ...+|.+.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 111 (232)
T TIGR00025 33 NRGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVI-GFVLGFRF 111 (232)
T ss_pred cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCc
Confidence 45678888888888777888888899999999999999999999999999999888888877776555444 45778887
Q ss_pred cchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcCCC
Q psy17042 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICE---LERNAIQLALGSFYPTLLLSGCF 228 (261)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~---~~~~a~~~~~~~~~p~~~~sG~~ 228 (261)
.++..... ....+..+...+++..++.+.+ +.+.+..+.+....|+.++||.
T Consensus 112 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p~~~lSG~- 166 (232)
T TIGR00025 112 AGGALTAL------------------------TLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLSAG- 166 (232)
T ss_pred CCchHHHH------------------------HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhe-
Confidence 76654443 3333444555666777777764 4445577888889999999999
Q ss_pred CCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 229 KNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 229 ~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
++|.+.||+|+|++++++|++|..-
T Consensus 167 ---~~P~~~mP~~lq~i~~~~P~t~~~~ 191 (232)
T TIGR00025 167 ---LVPLNLIPTWIKWFVRVQPSSYATE 191 (232)
T ss_pred ---eeecccccHHHHHHHHhCcHHHHHH
Confidence 9999999999999999999999753
No 4
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=2.9e-18 Score=149.54 Aligned_cols=156 Identities=19% Similarity=0.280 Sum_probs=131.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
+.+|.+|+.||++.+..+..+.. .+.....|||+|+++|++.+|++++++++||.+...+...++.++...+..+.++.
T Consensus 43 g~~y~~fl~~G~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~ 121 (236)
T TIGR01247 43 GVDYMTYLVPGIVAMTVFNMSFF-SGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAIL 121 (236)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45899999999999877665544 45667899999999999999999999999999999999999988887777666665
Q ss_pred cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Q psy17042 150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFK 229 (261)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~ 229 (261)
+..+..... +...++.++..++|.+++...||++.+..+...+..|+.++||.
T Consensus 122 ~~~~~~~~~-------------------------~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~-- 174 (236)
T TIGR01247 122 KPSGVIPTL-------------------------VLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGA-- 174 (236)
T ss_pred hhhhHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 543322222 34445667788999999999999999999999999999999999
Q ss_pred CccccccccHHHHHHHHHHhhhhhhh
Q psy17042 230 NMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 230 ~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
+||.+.+|+|+|+++++.|++|..
T Consensus 175 --~~P~~~~P~~~~~i~~~~P~~~~~ 198 (236)
T TIGR01247 175 --FYPITTMPAWMQGLAKINPLTYAV 198 (236)
T ss_pred --hcCHHhCHHHHHHHHHHCcHHHHH
Confidence 999999999999999999999875
No 5
>PRK15066 inner membrane transport permease; Provisional
Probab=99.79 E-value=8.4e-18 Score=148.86 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=130.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
+.+|.+|+.||++.+..+..+...++.++.+||++|++||++.+|++++++++||.+...+.+.++..+.+.++...+|.
T Consensus 56 ~~~y~~fl~pGll~~~~~~~~~~~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~ 135 (257)
T PRK15066 56 GFSYMQFIVPGLIMMSVITNSYSNVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPL 135 (257)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999999888777777888999999999999999999999999999999999888887776666666676
Q ss_pred cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Q psy17042 150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFK 229 (261)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~ 229 (261)
+..+ .+... ...++..+++...|++++...++.++...+.+....|++++||+
T Consensus 136 ~~~~-~~~~l------------------------~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi-- 188 (257)
T PRK15066 136 QVHH-WGIVL------------------------LTVLLTAILFSLGGLINAVFAKSFDDISIIPTFVLTPLTYLGGV-- 188 (257)
T ss_pred cHhH-HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcch--
Confidence 6542 22222 22222233333458899999999999999999999999999999
Q ss_pred CccccccccHHHHHHHHHHhhhhhhh
Q psy17042 230 NMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 230 ~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
+||.+.+|+|+|+++++.|++|+.
T Consensus 189 --~~p~~~lP~~l~~i~~~nPlt~~v 212 (257)
T PRK15066 189 --FYSISLLPPFWQGVSKLNPIVYMV 212 (257)
T ss_pred --hccHHhChHHHHHHHHHCcHHHHH
Confidence 999999999999999999999975
No 6
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.78 E-value=1.4e-17 Score=146.90 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=129.1
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
+.+|.+|++||++.+..+..+ ...+.....|||+|++++++.+|.++..+.+||.+...+..+++.++.+.++ ..+|.
T Consensus 55 ~~~y~~fl~pGi~~~~~~~~~-~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~-~~~g~ 132 (253)
T TIGR03861 55 YITYEVYIVPGLCCMILLFNG-MQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA-ALVGV 132 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcC
Confidence 457999999999998887655 4456678999999999999999999999999999999999999887766555 45676
Q ss_pred ccc-chHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Q psy17042 150 ECK-GDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCF 228 (261)
Q Consensus 150 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~ 228 (261)
+.. .+++... ...++..+...++|+++|.++|+.++...+...+..|++++||+
T Consensus 133 ~~~~~~~l~~~------------------------~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi- 187 (253)
T TIGR03861 133 QPPVWGYVSVL------------------------PALVLVAFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSA- 187 (253)
T ss_pred CCCchhHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhH-
Confidence 543 2232222 34444567778999999999999999999888999999999999
Q ss_pred CCcccccccc---HHHHHHHHHHhhhhhhh
Q psy17042 229 KNMVYPVNLA---ICELERNAIQLALGSFY 255 (261)
Q Consensus 229 ~~~~~P~~~~---P~~l~~~~~~~p~~~~~ 255 (261)
+||.+.+ |+|+|+++++.|++|..
T Consensus 188 ---~~p~~~~~~~p~~l~~i~~~nPl~~~i 214 (253)
T TIGR03861 188 ---LYPLWKMQEASTWLYWICALNPFTHAV 214 (253)
T ss_pred ---hhhhhhcccccHHHHHHHHhCcHHHHH
Confidence 9999876 89999999999999875
No 7
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.75 E-value=6e-16 Score=135.71 Aligned_cols=161 Identities=30% Similarity=0.392 Sum_probs=137.3
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042 67 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFV 146 (261)
Q Consensus 67 ~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~ 146 (261)
++++.+|.+|..|+++.+.............+.+||++|+++|++.+|+++...++++.+....+..++..+.+.+..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (286)
T COG0842 80 SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFL 159 (286)
T ss_pred cCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999888888877788888999999999999999888888898888888888888888878888
Q ss_pred HcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHhc
Q psy17042 147 FGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVIS-AICELERNAIQLALGSFYPTLLLS 225 (261)
Q Consensus 147 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is-~~~~~~~~a~~~~~~~~~p~~~~s 225 (261)
+|....++..... ....++.+...++|.+++ ...++.+.+..+......|+.+++
T Consensus 160 ~g~~~~~~~~~~~------------------------~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 215 (286)
T COG0842 160 LGVPFLGSLLLLL------------------------LLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLS 215 (286)
T ss_pred HcCCCCCcHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc
Confidence 9977777777666 566667778888888666 355666667778889999999999
Q ss_pred CCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 226 GCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 226 G~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
|. ++|.+.+|+|+|+++++.|.+|..
T Consensus 216 g~----~~p~~~~p~~~~~i~~~~P~t~~~ 241 (286)
T COG0842 216 GV----FFPLELLPAWLQGISYINPLTYAI 241 (286)
T ss_pred cc----cCchhhhHHHHHHHHHHccHHHHH
Confidence 99 999999999999999999998864
No 8
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.74 E-value=4.1e-19 Score=159.08 Aligned_cols=218 Identities=19% Similarity=0.327 Sum_probs=40.9
Q ss_pred hhhh-cCCCceEEEEEccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCCCCceeecccccCCCCCchhhHHHHHH
Q psy17042 4 KNTL-KTKKEICEVLHQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI 82 (261)
Q Consensus 4 ~~l~-~g~~~~i~v~~d~s~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~n~~~~y~~~~~p~~i 82 (261)
+++. +++++++++++|+++......+++.+++..++.+.+... .........|++.+.....++..++.+++.+.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (344)
T PF12698_consen 90 QDLLSSGESPNITVYINSSNPHSSQIIQNALSSLLQQLNASSEG--KSAIQSSNSPIPVESIPLSNPSSSFASYLIPFIL 167 (344)
T ss_dssp CHCH-TT--ECCEEEESSSSHHHHHHHHHHHHHHHHHHHHCCCG--CCCCHHHT--EEEEEEEECCCHHHCHTT------
T ss_pred ccccccCCcceEEEEeecccchhhhhhhccccccchhhhhhhhh--hhhhccccccccccccccccccccccccccccch
Confidence 3444 788999999999999888877777777655554433211 1111223356666544445555667777777444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ccccchHHHHH
Q psy17042 83 LTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG---VECKGDLLLVI 159 (261)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g---~~~~g~~~~~~ 159 (261)
.+. .+.+....+..+.+|||+|+.+|++.+|++++++.+||.+...++.+++.++..++ .+| ++.. +....+
T Consensus 168 ~~~-~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~-~~~~~~ 242 (344)
T PF12698_consen 168 FFI-LLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG-NFLLLL 242 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHH-HHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc-chHHHH
Confidence 333 34444445667899999999999999999999999999999999999988876553 555 5554 444443
Q ss_pred HHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccH
Q psy17042 160 ILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAI 239 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P 239 (261)
+..+++.++.+++|.+++.+.|+.+.+..+..++.++..+.+|. .+|.+.+|
T Consensus 243 ------------------------l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 294 (344)
T PF12698_consen 243 ------------------------LLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLSGG----FFPLSSLP 294 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhHHhhH
Confidence 67777888999999999999999999988777777777777777 89999999
Q ss_pred HHHHHHHHHhhhhhhhc
Q psy17042 240 CELERNAIQLALGSFYP 256 (261)
Q Consensus 240 ~~l~~~~~~~p~~~~~p 256 (261)
++++++.+++|..++.-
T Consensus 295 ~~~~~i~~~~P~~~~~~ 311 (344)
T PF12698_consen 295 SFLQWISSFLPFYWFIQ 311 (344)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 99999999999988653
No 9
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.74 E-value=1.2e-16 Score=136.86 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=129.4
Q ss_pred CCCCceeecccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy17042 55 ADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134 (261)
Q Consensus 55 ~~~pi~~~~~~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i 134 (261)
..+|++.+++. .|+..+|.++++|+++.+.+...+.... .+.++||+++ +.+|.+++++++||.+...+++.+
T Consensus 4 l~~pv~~~~~~-~~~~~~~~~~~~p~~~~~~l~~ga~~~~--~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~ 76 (208)
T TIGR03062 4 VAEPVKLKHSD-YDDVPNYGTGLAPYFLSLALFVGALVLN--MIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVL 76 (208)
T ss_pred cCCCceeceee-ccCCCCCcchhHHHHHHHHHHHHHHHHH--HHhccccccc----cccCchHHHHHHHHHHHHHHHHHH
Confidence 35899987555 4567789999999999988765444333 3345555543 588999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042 135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA 214 (261)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 214 (261)
+..+...+..+.+|++.. +.+... +..++..+++.++|..++...++..++...
T Consensus 77 ~~~~~~~i~~~~~g~~~~-~~~~~~------------------------l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~- 130 (208)
T TIGR03062 77 QAIILYGVLILGLGLDPA-HPPATF------------------------GFAILTSLTFMAIIQFLVALFGNVGRFLAL- 130 (208)
T ss_pred HHHHHHHHHHHHcCCccC-CHHHHH------------------------HHHHHHHHHHHHHHHHHHHHhCcchHHHHH-
Confidence 999988887777898864 555444 566777888999999999999977655443
Q ss_pred HHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 215 LGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 215 ~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
....|.++++|. ++|.+.+|+|+|++++++|++|..-
T Consensus 131 -~~~~~~~~~sG~----~~P~~~~P~~~~~i~~~~P~t~~~~ 167 (208)
T TIGR03062 131 -VLLVLQLGSSGG----TFPIELLPAFFQAIHPFLPMTYSVN 167 (208)
T ss_pred -HHHHHHHccCCC----ccchhhCHHHHHHhhhhCcHHHHHH
Confidence 344577778998 9999999999999999999998753
No 10
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.50 E-value=1.8e-12 Score=114.07 Aligned_cols=140 Identities=14% Similarity=0.047 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHccccc-chHHHHHHHHHhhh
Q psy17042 90 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALV--LIFMIFVFGVECK-GDLLLVIILTILQG 166 (261)
Q Consensus 90 ~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~--~~~~~~~~g~~~~-g~~~~~~~~~~~~~ 166 (261)
....+..++++|||+||+|.++++|++|+++++||.++...+..+..... .......+|.+.. .++....
T Consensus 65 ~p~l~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 137 (240)
T TIGR03518 65 IPAITMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTF------- 137 (240)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHH-------
Confidence 34446788999999999999999999999999999999988766554422 2222334554431 1222111
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccc--cHHHHHH
Q psy17042 167 LCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNL--AICELER 244 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~--~P~~l~~ 244 (261)
...+..+++..+..++|+++|+++|++..+..++......+ ..|. .+ ... .|++.|+
T Consensus 138 --------------~~~~~~~l~~~~~~aig~~iSsl~~~q~~a~~~~~~~~~~l--~~~~----~~-l~~~~~~~~~~~ 196 (240)
T TIGR03518 138 --------------GSYIGLLLLGSVYTAIGLFASSLTENQIVAFIIAVFLCFLF--YFGF----DG-LASLLWGGSAYT 196 (240)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--HHHH----HH-HhhhcchhHHHH
Confidence 11245566677889999999999999988877665443332 2332 11 233 4889999
Q ss_pred HHHHhhhhhhhcc
Q psy17042 245 NAIQLALGSFYPT 257 (261)
Q Consensus 245 ~~~~~p~~~~~p~ 257 (261)
+.++.|..|+...
T Consensus 197 l~~~sp~~~~~~~ 209 (240)
T TIGR03518 197 ISELGLSYHYESI 209 (240)
T ss_pred HHHcCHHHHHHHH
Confidence 9999999998654
No 11
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.36 E-value=2.4e-14 Score=120.63 Aligned_cols=131 Identities=22% Similarity=0.397 Sum_probs=114.2
Q ss_pred HHHHHHHHhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccc
Q psy17042 96 SALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVE 174 (261)
Q Consensus 96 ~~i~~Er~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (261)
.....|||+|+++|.+.+|. ++.+++++|.+...+..+++..+..+.....+|.+.+ +.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--------------- 134 (210)
T PF01061_consen 71 SSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFL--------------- 134 (210)
T ss_pred chhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchhee---------------
Confidence 34678999999999999999 9999999999999999999999888777666687766 443333
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhh
Q psy17042 175 CKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSF 254 (261)
Q Consensus 175 ~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~ 254 (261)
...++..++..++|.+++.++++.+.+..+...+..+++++||. ++|.+.+|+|+|++.++.|++|.
T Consensus 135 ---------~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~----~~p~~~lP~~~~~i~~~~P~~~~ 201 (210)
T PF01061_consen 135 ---------LILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGV----FFPLSSLPSWLRWISYLNPLTYA 201 (210)
T ss_pred ---------cccccccccccccccccccchhhhhhhhhhhhhcccccccceee----ecchHHChHHHHHHHHHHHHHHH
Confidence 45555667778999999999999999999999999999999999 99999999999999999999986
Q ss_pred h
Q psy17042 255 Y 255 (261)
Q Consensus 255 ~ 255 (261)
+
T Consensus 202 ~ 202 (210)
T PF01061_consen 202 V 202 (210)
T ss_pred H
Confidence 5
No 12
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.28 E-value=3.3e-10 Score=106.95 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---ccc
Q psy17042 75 DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIF-VF---GVE 150 (261)
Q Consensus 75 ~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~-~~---g~~ 150 (261)
+.+++.++.+.....+....+.++++||||+++|.++++|++|.+++.||+++..+++++|..+..+.+.+ .+ .+.
T Consensus 187 ~~~~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~ 266 (407)
T COG1668 187 VAILIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVA 266 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444444444444355688999999999999999999999999999999999999997766554411 11 011
Q ss_pred ccchHHHHHHHHHhhhcccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q psy17042 151 CKGDLLLVIILTILQGLCGMCFVECKGDL-LLVIILTILQGLCGMCFGFVISAICELERNAIQLAL 215 (261)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~ 215 (261)
..+...... ...+ .......+.-.+...+++.+++..+++.+++++...
T Consensus 267 ~~~~~~~~~----------------~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~ 316 (407)
T COG1668 267 LAGTGLALL----------------PAYLLLFALSLFLLGLLLYAALAAFLGAMAGSIKEAQTLIS 316 (407)
T ss_pred hhhhhHHhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 111000000 0000 111123333345556788999999999999998765
No 13
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=99.03 E-value=8.2e-09 Score=91.17 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcccccchHHHHHHH
Q psy17042 89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI-------FVFGVECKGDLLLVIIL 161 (261)
Q Consensus 89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~-------~~~g~~~~g~~~~~~~~ 161 (261)
.+...++..+++|||+||+|.++++|++|+++++||+++..+.++. ..+..+++. ...|.+..........
T Consensus 81 ~~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (277)
T PF12679_consen 81 FAIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLL- 158 (277)
T ss_pred HHHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHH-
Confidence 4566778899999999999999999999999999999999988543 222222111 1223333222111110
Q ss_pred HHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q psy17042 162 TILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPT 221 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~ 221 (261)
.......+..++..++++++|++.|+++.+...+..+.+..
T Consensus 159 -------------------~~~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 159 -------------------LLFVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 00012222222568999999999999999988766544433
No 14
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=98.84 E-value=1.5e-07 Score=81.53 Aligned_cols=130 Identities=17% Similarity=0.336 Sum_probs=91.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
+.+-..-..||++.+...+.+.........+|+|+|++|.++.+|.++..+++||.+..++...+-..+..-+....+|.
T Consensus 40 ~~~~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~ 119 (215)
T PF03379_consen 40 DPDLLARVAPGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNL 119 (215)
T ss_pred chhHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444567899999988887777778889999999999999999999999999999999999887777666655567787
Q ss_pred cccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh---ccHHHHH-HHHHHHHHHHHHh
Q psy17042 150 ECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAIC---ELERNAI-QLALGSFYPTLLL 224 (261)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~---~~~~~a~-~~~~~~~~p~~~~ 224 (261)
+.. ++..+. +...+...+..++|.+.++++ |+.+.-. .+..+..+|.+..
T Consensus 120 ~~~-~~~~~~------------------------~~l~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~ 173 (215)
T PF03379_consen 120 PIS-SWPLLL------------------------LSLLLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIF 173 (215)
T ss_pred Chh-HHHHHH------------------------HHHHHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 763 333332 333344455556666655553 3333222 2455677777665
No 15
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.76 E-value=3.5e-07 Score=90.77 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=102.7
Q ss_pred HhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHH
Q psy17042 103 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLL 181 (261)
Q Consensus 103 ~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (261)
|+..+.|-..... +...++++|.+......++..++...+.++..|.+.... .+. .
T Consensus 418 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~--~f~---------------------~ 474 (617)
T TIGR00955 418 ELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGAT--HFL---------------------T 474 (617)
T ss_pred HHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHH--HHH---------------------H
Confidence 4446666666665 778999999999999998888877776666667654322 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhcc
Q psy17042 182 VIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPT 257 (261)
Q Consensus 182 ~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~ 257 (261)
.+++.++..++..++|.++++++++...|..++.++..++++++|+ +.|.+.+|.|++|+.++.|+.|-+-.
T Consensus 475 f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~----~i~~~~ip~~~~W~~~isp~~ya~~a 546 (617)
T TIGR00955 475 FLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGF----FINSDSIPVYFKWLSYLSWFRYGNEG 546 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc----ccChhhccHHHHHHHHcCHHHHHHHH
Confidence 1256666778889999999999999999999999999999999999 99999999999999999998886543
No 16
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=98.70 E-value=7.2e-07 Score=77.00 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 70 DPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 70 ~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
+.+-..-..|+++.....+...........+|+|+|++|.++.+|.++..+++||.+..++...+...+..-.....+|.
T Consensus 37 ~~~~l~~~apgilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~ 116 (211)
T TIGR01190 37 ELKLLSRIAPGIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNL 116 (211)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 44455668999999998887777777889999999999999999999999999999999999887777666555567888
Q ss_pred cccch
Q psy17042 150 ECKGD 154 (261)
Q Consensus 150 ~~~g~ 154 (261)
+..+.
T Consensus 117 ~~~~~ 121 (211)
T TIGR01190 117 DVPAW 121 (211)
T ss_pred CchHH
Confidence 76544
No 17
>PLN03211 ABC transporter G-25; Provisional
Probab=98.69 E-value=6.9e-07 Score=89.34 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=100.4
Q ss_pred HhChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhH
Q psy17042 103 MEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLL 180 (261)
Q Consensus 103 ~~gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (261)
|+..+.|-+.+.. +...++++|.+..+...++..++...+.++.-|.+.... ++..+
T Consensus 464 er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~--------------------- 522 (659)
T PLN03211 464 ERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTL--------------------- 522 (659)
T ss_pred hhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHH---------------------
Confidence 3345555555554 778999999999999998888887777777777775432 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 181 LVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 181 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
++.++..++..++|.++++++++.+.|+.++.++..|++++||+ +.+ .+|+|++|+.++.|+.|-+=
T Consensus 523 ---li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf----~i~--~ip~~~~W~~ylS~~~y~~e 589 (659)
T PLN03211 523 ---LVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF----YVH--KLPSCMAWIKYISTTFYSYR 589 (659)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhh----hHh--hchHHHHHHHHhCHHHHHHH
Confidence 77888889999999999999999999999999999999999999 776 79999999999999887553
No 18
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=98.69 E-value=6.2e-07 Score=79.69 Aligned_cols=116 Identities=15% Similarity=0.242 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHcccccchHHHHHHHHHhh
Q psy17042 89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL--IF-MIFVFGVECKGDLLLVIILTILQ 165 (261)
Q Consensus 89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~--~~-~~~~~g~~~~g~~~~~~~~~~~~ 165 (261)
.+...+...+++|+|+||.+.+++.|++|++++.||.++......+...+.. .. ....++.+...+.....
T Consensus 74 ~~~~l~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~------ 147 (278)
T COG1277 74 LAILLGADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRL------ 147 (278)
T ss_pred HHHHHccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH------
Confidence 4556677889999999999999999999999999999999988887777766 22 23345555443332211
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042 166 GLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL 224 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~ 224 (261)
........++.....+++.+++...|+...+...+........+.
T Consensus 148 --------------~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 192 (278)
T COG1277 148 --------------LLFLGSSLLYGLVLLSISLLISSLFSSSSLALLVSIILLLLFIIA 192 (278)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 112267788889999999999999999988888766555544444
No 19
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.58 E-value=1.4e-06 Score=93.61 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=101.0
Q ss_pred HhChhHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhH
Q psy17042 103 MEGLLDRSWVAG-VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLL 180 (261)
Q Consensus 103 ~~gtl~~ll~~p-~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (261)
||..+.|-+... .+++.+.++|.++.+...++..++...+.++..|++.... ++..+
T Consensus 478 eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~--------------------- 536 (1394)
T TIGR00956 478 ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL--------------------- 536 (1394)
T ss_pred cCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH---------------------
Confidence 344444444333 3678899999999999998888887777666667765433 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 181 LVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 181 ~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
+..++..++..+++.+++++++|...|..++.+...++++++|+ +.|.+.||.|++|+.++.|+.|-+=
T Consensus 537 ---l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf----~i~~~~mp~~~~W~~yisp~~yafe 605 (1394)
T TIGR00956 537 ---LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF----AIPRPSMLGWSKWIYYVNPLAYAFE 605 (1394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc----ccChhhccHHHHHHHHcCHHHHHHH
Confidence 56666777888999999999999999999999999999999999 9999999999999999999988653
No 20
>PLN03140 ABC transporter G family member; Provisional
Probab=98.53 E-value=4.2e-06 Score=90.25 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=102.2
Q ss_pred ChhHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhHHH
Q psy17042 105 GLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLLLV 182 (261)
Q Consensus 105 gtl~~ll~~p~-~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (261)
..+.|-+.+.. +.+.+.+++++..+...+++.++..++.++..|++.... +...+
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~----------------------- 1331 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY----------------------- 1331 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH-----------------------
Confidence 34555555543 678899999999999999999988887777778765322 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhcc
Q psy17042 183 IILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPT 257 (261)
Q Consensus 183 ~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~ 257 (261)
+..++..++..++|+++++++++...|..++.++..++.+++|+ +.|...||.|++|+.++-|++|.+=.
T Consensus 1332 -~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf----~i~~~~iP~~~~W~~~isp~~y~~~~ 1401 (1470)
T PLN03140 1332 -FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF----FIPRPKIPKWWVWYYWICPVAWTVYG 1401 (1470)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee----ccChHHCchHHHHHHHcCHHHHHHhh
Confidence 55566678889999999999999999999999999999999999 99999999999999999999987543
No 21
>PLN03140 ABC transporter G family member; Provisional
Probab=98.51 E-value=4.5e-06 Score=89.98 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHH
Q psy17042 115 VTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCG 193 (261)
Q Consensus 115 ~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 193 (261)
.+++.+.+++++..+.+.++..++...+.++..|++... .++..+ ++.++...+.
T Consensus 608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~------------------------l~~~l~~~~~ 663 (1470)
T PLN03140 608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQL------------------------LLVFLIQQMA 663 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHH------------------------HHHHHHHHHH
Confidence 467899999999999999999988888888887876643 333333 6666677888
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 194 MCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 194 ~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
.+++.++++++++...|+.++.++.+++++++|+ +.|.+.||+|++|+.++-|+.|-+-
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf----~i~~~~ip~w~~W~~yisp~~Ya~e 722 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGF----ILPKGEIPNWWEWAYWVSPLSYGFN 722 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccc----eechHhCchHHHHHHHhCHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999987553
No 22
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=1e-05 Score=72.29 Aligned_cols=157 Identities=19% Similarity=0.260 Sum_probs=112.6
Q ss_pred cccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042 65 IYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI 144 (261)
Q Consensus 65 ~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~ 144 (261)
....++.+|.-|+.-|+++......+...+..++ .++++ -+.-.+.++....+++.+.......+...+++.+..
T Consensus 60 l~~~~~~~~~~~l~~G~~~w~f~~~~i~~~~~s~-~~n~~----li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i 134 (263)
T COG1682 60 LLRSPGLNFLAYLLAGLILWFFFSEAISEGAGSV-VANAA----LIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLI 134 (263)
T ss_pred HHhCCCcchHHHHHHHHHHHHHHHHHHHhHHHHh-hhhHH----HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477899999999988776655544444444 33321 122346789999999999999988888876655543
Q ss_pred HHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042 145 FVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL 224 (261)
Q Consensus 145 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~ 224 (261)
.+|.....++.... ....+..+.+.++|+++|.++-.-+.-.++...+.-+.++.
T Consensus 135 -~~~~~~s~~~l~~~------------------------~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~~~~f~~ 189 (263)
T COG1682 135 -ILGVEPSWHWLLLL------------------------PALLLLILFSVGLGLILASLGVRFRDLGQILGVVLQLLFFL 189 (263)
T ss_pred -HHcCCCcHHHHHHH------------------------HHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHh
Confidence 45544444444443 44444556667888888888776667777766788889999
Q ss_pred cCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 225 SGCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 225 sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
|++ +||.+..|+..|+..++.|++|..
T Consensus 190 sPI----i~~~~~~p~~~~~~~~~NP~~~ii 216 (263)
T COG1682 190 SPI----IYPVSNLPEQLRELVLLNPLTHII 216 (263)
T ss_pred Cce----eeehhhccHHHHHHHHHCcHHHHH
Confidence 999 999999999999999999999975
No 23
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.40 E-value=7.5e-06 Score=88.11 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=94.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch--------HHHHHHHHHhhhcccccccccchhhHHHHHHHH
Q psy17042 116 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD--------LLLVIILTILQGLCGMCFVECKGDLLLVIILTI 187 (261)
Q Consensus 116 ~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (261)
+...++++|.+..+...++..++...+.++..|++.... ..... +..+
T Consensus 1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~------------------------~~~~ 1224 (1394)
T TIGR00956 1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFW------------------------LLST 1224 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHH------------------------HHHH
Confidence 567899999999999999888887777666667654321 22222 5666
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhc
Q psy17042 188 LQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYP 256 (261)
Q Consensus 188 l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p 256 (261)
++.++..++|.++++++++...|..+..++..++++++|+ +.|.+.+|.|++|+.++-|++|.+=
T Consensus 1225 ~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~----~~~~~~ip~~~~w~~~~sp~~y~~~ 1289 (1394)
T TIGR00956 1225 MFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGV----LAPPSRMPGFWIFMYRCSPFTYLVQ 1289 (1394)
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccc----cCChhHCcHHHhHHHhcCHHHHHHH
Confidence 6777888999999999999999999999999999999999 9999999999999999999988764
No 24
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=98.25 E-value=0.00022 Score=59.64 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcc-cccch-HHHHHHHHH
Q psy17042 89 LAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFGV-ECKGD-LLLVIILTI 163 (261)
Q Consensus 89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~---~~~g~-~~~g~-~~~~~~~~~ 163 (261)
.....++....+|+++|+.+.++++|.+|.+++.+|.+...+...+..++..+... ..++. +.+.+ .....
T Consensus 61 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 136 (232)
T PF12730_consen 61 LIIILAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYL---- 136 (232)
T ss_pred HHHHHHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHH----
Confidence 34445677889999999999999999999999999999999988777666443332 22231 11111 11111
Q ss_pred hhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q psy17042 164 LQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFY 219 (261)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~ 219 (261)
....+..++..+....+ .+++.+.||.-.+..+......
T Consensus 137 ----------------~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~ 175 (232)
T PF12730_consen 137 ----------------ISYLLLFLLLSLFISLL-LFISSLFRNSIVAIIISILLFL 175 (232)
T ss_pred ----------------HHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 11123444444455555 7889999987666555444443
No 25
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.4e-05 Score=66.63 Aligned_cols=83 Identities=11% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy17042 69 NDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG 148 (261)
Q Consensus 69 ~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g 148 (261)
|+.+-..-+.||++.......++..-.....+|+|+|++|.++.+|.+...++.||.++++....+-.++..-+....+|
T Consensus 42 pd~~~la~iaPgilWia~lLA~lL~l~rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~ 121 (221)
T COG2386 42 PDPQLLARIAPGILWIAALLASLLGLERLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLN 121 (221)
T ss_pred CchhHHHHhcchHHHHHHHHHHHHhHHHHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 46666777899999888877777666778899999999999999999999999999999999887766665555555677
Q ss_pred ccc
Q psy17042 149 VEC 151 (261)
Q Consensus 149 ~~~ 151 (261)
++.
T Consensus 122 ~~~ 124 (221)
T COG2386 122 MDV 124 (221)
T ss_pred CCH
Confidence 665
No 26
>KOG0065|consensus
Probab=98.25 E-value=3.9e-05 Score=80.33 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHH
Q psy17042 114 GVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG-DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLC 192 (261)
Q Consensus 114 p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 192 (261)
=.++|...++.++..+...++.+++..++.++..|+...+ .++..+ ++.++...+
T Consensus 529 fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~f------------------------L~lf~~~~~ 584 (1391)
T KOG0065|consen 529 FYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQF------------------------LFLFLCQFC 584 (1391)
T ss_pred ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHH------------------------HHHHHHHHH
Confidence 4578999999999999999998888888888888886654 344444 677777788
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhccc
Q psy17042 193 GMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTL 258 (261)
Q Consensus 193 ~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~~ 258 (261)
+.++--++++++|+...|+.++.+..+..++.+|+ ..|...||+|++|++++.|+.+-+-.+
T Consensus 585 ~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf----~Ip~~~m~~W~~Wi~yinPl~Y~fesl 646 (1391)
T KOG0065|consen 585 MSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGF----VIPKKDMPPWFRWIAYINPLMYAFESL 646 (1391)
T ss_pred HHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcce----eeeccccchHHHHHHHHCHHHHHHHHH
Confidence 88888999999999999999999999999999999 999999999999999999998865443
No 27
>KOG0061|consensus
Probab=98.24 E-value=5.6e-05 Score=75.11 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=100.0
Q ss_pred HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccch
Q psy17042 98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKG 177 (261)
Q Consensus 98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 177 (261)
+.+|+.+|.. +.+.++++|.+..+...++..++...+.++..|.+.........
T Consensus 419 f~rE~~~~~Y--------~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~------------------ 472 (613)
T KOG0061|consen 419 FLRETSSGLY--------RLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYF------------------ 472 (613)
T ss_pred HHHHHhcCch--------hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHH------------------
Confidence 4566666654 46788999999999999988888888877777775543222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 178 DLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 178 ~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
.+..++..++..++|+++++..+|...+..+...+..+++++||+ +.+.+.+|.|++|+.++....|-+
T Consensus 473 -----~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~----fi~~~~ip~~~~w~~~~S~~ry~~ 541 (613)
T KOG0061|consen 473 -----LLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGF----FINFDSIPKYFRWISYLSYFRYAF 541 (613)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhh----hcCcccccHHHHHHHHHhHHHHHH
Confidence 267777788899999999999999999999999999999999999 999999999999998887776654
No 28
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.98 E-value=0.00056 Score=61.13 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 189 QGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 189 ~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
..+...++|+++|.+..--++...+......++++.||+ +||.+.+|++.+++-++.|++|+.
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI----~y~~~~vp~~~~~il~~NPl~~~i 220 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAV----FYTANELPYSLLSIFSWNPLLHAN 220 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhH----hhhHHhCcHHHHHHHHHCcHHHHH
Confidence 444556777777776555555555555677788999999 999999999999999999999874
No 29
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=97.63 E-value=0.0029 Score=54.91 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhccccccc
Q psy17042 95 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVM-CGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFV 173 (261)
Q Consensus 95 ~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~-~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (261)
...+.++-++|.+|+.+..|++.......+-+....+. ++.....+.......+++.. .....
T Consensus 51 ~~~i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~--~~~~~-------------- 114 (229)
T PF06182_consen 51 IWEISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWS--PLNIL-------------- 114 (229)
T ss_pred HHHHhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCcc--HHHHH--------------
Confidence 34678888999999999999999877777666654333 33333333333333444442 22221
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHH-h
Q psy17042 174 ECKGDLLLVIILTILQGLCGMCFGFVISA---ICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQ-L 249 (261)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~lg~~is~---~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~-~ 249 (261)
..++...+..+...++...++. +..+.+....+ ..-+++|. .+|++-.|+|+|++... +
T Consensus 115 -------~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~~i------~~~l~sg~----~~Pl~~fp~~~~~il~~~l 177 (229)
T PF06182_consen 115 -------LFILSLLLGFLINFSIFFIIGLLAFWFTESWGLSYI------FYSLLSGA----IYPLSIFPGWIQFILTFIL 177 (229)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHHHHHH----HccHHHhHHHHHHHHHHHh
Confidence 0012222222223333333333 33333333221 22337888 99999999999999988 8
Q ss_pred hhhhh
Q psy17042 250 ALGSF 254 (261)
Q Consensus 250 p~~~~ 254 (261)
|....
T Consensus 178 Pf~~i 182 (229)
T PF06182_consen 178 PFAYI 182 (229)
T ss_pred hHHHH
Confidence 77653
No 30
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=97.50 E-value=0.007 Score=67.63 Aligned_cols=121 Identities=14% Similarity=0.189 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q psy17042 74 TDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKG 153 (261)
Q Consensus 74 ~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g 153 (261)
.....|.++++..+.. .......+..|||++.-|.+...+++.+...++..+.+++..++..+++.++.. ...+-...
T Consensus 651 ~~~~~pl~~~la~~~~-~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~-~~~~~~~s 728 (2272)
T TIGR01257 651 LNRCFPIFMVLAWIYS-VSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM-HGRILHYS 728 (2272)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCceeecC
Confidence 3567787777666544 444567789999999999999999999999999988888877776655433221 11121223
Q ss_pred hHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy17042 154 DLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYP 220 (261)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p 220 (261)
++..++ +..++|.++.+++++++|.+.++.+.|...+.++.+.
T Consensus 729 ~~~~lf------------------------l~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~ 771 (2272)
T TIGR01257 729 DPFILF------------------------LFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFT 771 (2272)
T ss_pred ChHHHH------------------------HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 343343 7888899999999999999999999888776554443
No 31
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.007 Score=52.55 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=74.4
Q ss_pred HHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcccccchHHHHHHHHHhhhccccc
Q psy17042 95 SSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMI---FVFGVECKGDLLLVIILTILQGLCGMC 171 (261)
Q Consensus 95 ~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~---~~~g~~~~g~~~~~~~~~~~~~~~~~~ 171 (261)
+....-|+++|.+|+++..|++|+++.++|....++...+..++...... ..+|.+..-....
T Consensus 72 ~l~l~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~-------------- 137 (239)
T COG4200 72 ALVLSVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAA-------------- 137 (239)
T ss_pred HHHHHHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH--------------
Confidence 33447899999999999999999999999999998888777666544321 2334333111111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy17042 172 FVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLL 224 (261)
Q Consensus 172 ~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~ 224 (261)
.+.......+.++-..++-..++...+|...+..++.+. |..+.
T Consensus 138 -------~~~~~~~gll~alpl~~lQ~wLsm~fknf~~al~igI~l--~a~fv 181 (239)
T COG4200 138 -------AFTLLILGLLLALPLVALQFWLSMRFKNFAVALVIGIFL--PALFV 181 (239)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhH--HHHHH
Confidence 111224555566667789999999999999999887666 55544
No 32
>KOG0065|consensus
Probab=97.38 E-value=0.00066 Score=71.47 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=94.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccch-HHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHH
Q psy17042 116 TPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGD-LLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGM 194 (261)
Q Consensus 116 ~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 194 (261)
+...++++..+......++++.+..+..++--|+....+ ....+ +..+++.+.+.
T Consensus 1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~------------------------~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFL------------------------LFMFIFFLYFT 1250 (1391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHH------------------------HHHHHHHHHHH
Confidence 566789999999999999999987665544445544332 22222 66777888899
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhhccc
Q psy17042 195 CFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFYPTL 258 (261)
Q Consensus 195 ~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~p~~ 258 (261)
.+|+++.++++|.+.|..+..+++.....++|+ +-|...+|.|+.|.-++-|++|++=.+
T Consensus 1251 ~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~----l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1251 TLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGF----LQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHhccc----ccccccccceeeeeeecCcHHHHHHHH
Confidence 999999999999999999988888888899999 999999999999999999999987543
No 33
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=97.27 E-value=0.039 Score=48.55 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccc-cchHHHHHHHHHhhh
Q psy17042 90 AVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFG--VEC-KGDLLLVIILTILQG 166 (261)
Q Consensus 90 ~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g--~~~-~g~~~~~~~~~~~~~ 166 (261)
....++....+|+++|+.+.+++.|+++.++.++|++.......++..+.+......++ .+. .-+....+
T Consensus 60 i~i~~~~~~~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l------- 132 (248)
T TIGR03733 60 IGIVCGMVVEQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFL------- 132 (248)
T ss_pred HHHHHHHHHHHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH-------
Confidence 34445677789999999999999999999999999999888887766644222211111 111 11111111
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy17042 167 LCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALG 216 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~ 216 (261)
...+..++..+....+++.++...++. .+..++..
T Consensus 133 --------------~~~~~l~~~sl~~~~l~l~ls~~~g~~-~si~ig~~ 167 (248)
T TIGR03733 133 --------------IAALLLIIGSLFLYIIHLFVSFAFGMG-ASIGIGIV 167 (248)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHH
Confidence 112455666777788899999888864 34444433
No 34
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.26 E-value=0.12 Score=48.56 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=65.4
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-----chHHHHHHHHHhhhcccccccccchhhHHHHHHH
Q psy17042 112 VAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-----GDLLLVIILTILQGLCGMCFVECKGDLLLVIILT 186 (261)
Q Consensus 112 ~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 186 (261)
..++++.++++-|++...+..++.++....+. ..|++++. +++.... +..
T Consensus 236 ~~~l~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~W------------------------m~~ 290 (382)
T PF12051_consen 236 RRKLKPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYW------------------------MFS 290 (382)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHH------------------------HHH
Confidence 45678999999999999999988888776666 67888873 2232222 444
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 187 ILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 187 ~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
++++.+.-...-.+.++...+- ..+++....+.++ +++++|++..|.+-|+ .+.+|+++.+
T Consensus 291 ~l~m~a~g~~~e~~~~~i~~~~------~~~~ll~wvi~nv-~~~~~P~el~p~fyr~-gya~P~~n~~ 351 (382)
T PF12051_consen 291 WLYMSAVGLANENVISIIGPPF------MPFWLLFWVILNV-SSTFYPLELSPGFYRY-GYAMPMHNIY 351 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHHhc-ccccCChhhCccHHHH-hhhhhHHHHH
Confidence 4443332222222222222111 1122222233333 4558999999998885 5555988754
No 35
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.14 E-value=0.075 Score=46.85 Aligned_cols=141 Identities=14% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccccchHHHHHHHHHhh
Q psy17042 89 LAVALTSSALIIERMEGLLDRSWVAGVTP-LEILFSHVITQFVVMCGQTALVLIFMIFVFG--VECKGDLLLVIILTILQ 165 (261)
Q Consensus 89 ~~~~~~~~~i~~Er~~gtl~~ll~~p~~~-~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g--~~~~g~~~~~~~~~~~~ 165 (261)
....-+..-+.+|-++|.+..-+..|++. ++-+..++.-...+++.-...++++-....+ .+..+ ...+..
T Consensus 75 lt~~~~~~ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~-~~~l~~----- 148 (268)
T COG4587 75 LTTVWSIWEFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLS-PWTLYL----- 148 (268)
T ss_pred HHHHHHHHHHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCC-HHHHHH-----
Confidence 33445556688999999999889999865 3445555554444433333332222222223 22222 222220
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHH
Q psy17042 166 GLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERN 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~ 245 (261)
.++.+.+.+ ...-.+-..+++++=-.+.++.+......-..+.||. ..|++..|+|+|.+
T Consensus 149 ---------------~~l~la~~~-~~~F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~----l~PL~~fP~~v~~i 208 (268)
T COG4587 149 ---------------FVLALALLF-LLRFLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGS----LAPLAFFPDWVRAI 208 (268)
T ss_pred ---------------HHHHHHHHH-HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhccc----cchHHhChHHHHHH
Confidence 000111111 1112233344444333345666666666777888999 99999999999999
Q ss_pred HHHhhhhhhh
Q psy17042 246 AIQLALGSFY 255 (261)
Q Consensus 246 ~~~~p~~~~~ 255 (261)
....|..+.+
T Consensus 209 l~ftPFpy~~ 218 (268)
T COG4587 209 LAFTPFPYLL 218 (268)
T ss_pred HHhCCchhhh
Confidence 9999987764
No 36
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=96.47 E-value=0.42 Score=39.89 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=40.3
Q ss_pred HHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042 96 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFM 143 (261)
Q Consensus 96 ~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~ 143 (261)
.....|++++..+-..+.|++|.+++.+|.+...+...+..++..+..
T Consensus 54 ~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~ 101 (206)
T PF13346_consen 54 SSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA 101 (206)
T ss_pred HHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888999999999999999999999988887765544
No 37
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=96.43 E-value=0.26 Score=43.27 Aligned_cols=49 Identities=4% Similarity=-0.003 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042 92 ALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVL 140 (261)
Q Consensus 92 ~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~ 140 (261)
..++....+|+++|.++.+++.|+++.++.++|.+.......+...+.+
T Consensus 57 ii~~~~~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~ 105 (241)
T TIGR03732 57 LICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILF 105 (241)
T ss_pred HHHHHHHHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666788888999999999999999999999998888777766654
No 38
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.15 E-value=0.38 Score=54.41 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=71.0
Q ss_pred HHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---cchHHHHHHHHHhhhcccccc
Q psy17042 96 SALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC---KGDLLLVIILTILQGLCGMCF 172 (261)
Q Consensus 96 ~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~---~g~~~~~~~~~~~~~~~~~~~ 172 (261)
.-+.+||+.+.-...+.+++++..+=++..+...+..++.+++++++. ..|+.+- ..++..++
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~-~~f~~~~~~~~~~l~~~~------------- 1764 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIF-IGFQKKAYTSPENLPALV------------- 1764 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChhhhcCcchHHHHH-------------
Confidence 346799999998888999999999999999999999888877765543 4555332 12333333
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042 173 VECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA 214 (261)
Q Consensus 173 ~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 214 (261)
++.++|.++.+-+..++|.+.++...|....
T Consensus 1765 -----------lll~lyG~a~ip~tYl~SflF~~~~~A~~~~ 1795 (2272)
T TIGR01257 1765 -----------ALLMLYGWAVIPMMYPASFLFDVPSTAYVAL 1795 (2272)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHhhCCchhHHHHH
Confidence 6777788888888899999999888776543
No 39
>COG1511 Predicted membrane protein [Function unknown]
Probab=96.14 E-value=0.089 Score=54.03 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=100.0
Q ss_pred CCCCceeecccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy17042 55 ADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134 (261)
Q Consensus 55 ~~~pi~~~~~~~~n~~~~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i 134 (261)
...|+...+...+ +-.+|..-+.|........... .....+..++ . ....+.+.....++|.+....+...
T Consensus 564 ia~p~~~~~~~~~-~v~~~g~~~ap~~~~l~l~vg~--l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~i~~~~~ 634 (780)
T COG1511 564 IANPVELKEKDID-PVPNYGSGLAPFYTALALWVGA--LLTSLLTTDV-D-----LSDGILNGRVYFFGKNLVFITLGLI 634 (780)
T ss_pred hcCchhccccccc-cccccCccccHHHHHHHHHHHH--HHHHHHHhcc-c-----ccccccchHHHHHHhhhHHHHHHHH
Confidence 3467776655443 3556777778877777765544 3333344444 2 2334566778899999999999999
Q ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042 135 QTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA 214 (261)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 214 (261)
+..+...-.....|+.....+... ...+...+++..+-..+...+.+...+..+.
T Consensus 635 q~~i~~~~~~~~l~~~~~~~~~~~-------------------------~~~i~~s~~f~~ii~~lv~~~g~~g~~i~iv 689 (780)
T COG1511 635 QSLIVTLGLVLLLGVEVKSPLLLV-------------------------LFAIFSSVAFMIIIYLLVSLFGNPGKFIAIV 689 (780)
T ss_pred HHHHHHhcCeEEEEeccCchhHHH-------------------------HHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence 996655443445566555444333 3334444444455555555555555555443
Q ss_pred HHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhhh
Q psy17042 215 LGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSFY 255 (261)
Q Consensus 215 ~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~~ 255 (261)
+.......+| |.||++..|.+.|.+...+|++|.+
T Consensus 690 --llvlq~~~~~----G~~pi~~~~~~~~~l~~~lp~ty~v 724 (780)
T COG1511 690 --LLVLQIAGSG----GTFPIQLSPSFFQILHPALPLTYAV 724 (780)
T ss_pred --HHHHHHhccc----cccchhccHHHHHHHHHhccHHHHH
Confidence 2222333344 4899999999999999999999875
No 40
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=96.03 E-value=0.43 Score=45.39 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=72.2
Q ss_pred HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccchHHHHHHHHHhhhcccccccc
Q psy17042 98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV---ECKGDLLLVIILTILQGLCGMCFVE 174 (261)
Q Consensus 98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~---~~~g~~~~~~~~~~~~~~~~~~~~~ 174 (261)
+.+|.+++..|.+++.|++|++.+.+..............+.+.-...-++. ...++...++ .-|
T Consensus 371 l~geEr~nr~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v----~sg-------- 438 (536)
T COG3559 371 LHGEERGNRAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVV----GSG-------- 438 (536)
T ss_pred HhhHhhcchHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHH----HHh--------
Confidence 3466666778999999999999999988776666655554443322233332 2234444443 001
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCCccccccccHHHHHHHHHHhhhhhh
Q psy17042 175 CKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQLALGSF 254 (261)
Q Consensus 175 ~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~~~~~~p~~~~sG~~~~~~~P~~~~P~~l~~~~~~~p~~~~ 254 (261)
+....-.....++.+.+..+++....-..+-......+..++| +-++|+|+.. .-|++|.
T Consensus 439 ---------l~~lvav~f~l~ia~ll~GLaPr~t~laWlyl~~~~fvtyLg~--------Llslpewl~n---lSp~~hi 498 (536)
T COG3559 439 ---------LVQLVAVWFLLAIAVLLFGLAPRFTPLAWLYLIVGFFVTYLGG--------LLSLPEWLLN---LSPFAHI 498 (536)
T ss_pred ---------HHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHH--------hcccHHHHhc---CCccccC
Confidence 2222233344566667777788776666654444444444444 4458888774 3455553
No 41
>KOG0059|consensus
Probab=87.82 E-value=7.1 Score=40.87 Aligned_cols=96 Identities=20% Similarity=0.351 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHhhhccccccc
Q psy17042 94 TSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCFV 173 (261)
Q Consensus 94 ~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (261)
.....+.||+.+.-.....++++++.+-++..+...+..++.......+. ..||.....+.....
T Consensus 315 ~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~-~~f~~~~~~~~~~~~-------------- 379 (885)
T KOG0059|consen 315 FLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLIFV-LIFGFFAGNNTVIIL-------------- 379 (885)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-heeecccccchHHHH--------------
Confidence 34567899999988888999999999999999999998887777665544 355533344444444
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q psy17042 174 ECKGDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLA 214 (261)
Q Consensus 174 ~~~~~~~~~~l~~~l~~~~~~~lg~~is~~~~~~~~a~~~~ 214 (261)
+...++....+.+....+...+.++.+....
T Consensus 380 ----------~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~ 410 (885)
T KOG0059|consen 380 ----------LLLLLYIRSAIPLTYILSFIFSKESTASVIL 410 (885)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcCCcCceeeh
Confidence 6777778888899999999999888877653
No 42
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=84.77 E-value=29 Score=33.50 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17042 98 LIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIF 145 (261)
Q Consensus 98 i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~ 145 (261)
...|+|. ++-+++-|+++.+++.+|++...++...-......++..
T Consensus 314 l~~E~~~--~~~l~sLPi~~~~~v~sKil~~~~i~~~l~~~i~i~~~~ 359 (449)
T PF09847_consen 314 LKIEGEG--FEFLRSLPIKKREFVRSKILIPSIIPSALSLIIVIVSSI 359 (449)
T ss_pred HHHhhhc--chhHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 688888999999999999999998887655554444433
No 43
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=47.88 E-value=2.7e+02 Score=27.05 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=38.2
Q ss_pred HHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy17042 99 IIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGV 149 (261)
Q Consensus 99 ~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i~~~~~~~~~~~~~g~ 149 (261)
.+|.|+|.-|-++++++++..-+.+-+...+..+++..++. .++...+++
T Consensus 107 RkdEesG~vElirs~~vgrlan~~aa~~~ll~~sil~gai~-alsLla~~~ 156 (536)
T COG3559 107 RKDEESGRVELIRSTVVGRLANLTAALLLLLGASILTGAIG-ALSLLATRY 156 (536)
T ss_pred CCccccChhhhhhhhccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 46778899999999999999988888888888877766654 334445543
No 44
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=44.86 E-value=3.1e+02 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=14.3
Q ss_pred HHHHHHHHHhChhHHHHhcCCChHHHHHH
Q psy17042 95 SSALIIERMEGLLDRSWVAGVTPLEILFS 123 (261)
Q Consensus 95 ~~~i~~Er~~gtl~~ll~~p~~~~~il~g 123 (261)
...+.+-|+-|+ +|+ .+.++++++.-
T Consensus 186 ~~~~~~~K~~gI-~rL--~G~s~~~I~~~ 211 (679)
T TIGR01654 186 YYLMINMKRVAI-YRL--NGFSLRKILFR 211 (679)
T ss_pred HHHHHHHHHHHH-HHH--hCCcHHHHHHH
Confidence 344555566555 333 36777776443
No 45
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=44.34 E-value=2e+02 Score=25.99 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=46.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy17042 72 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 133 (261)
Q Consensus 72 ~y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~ 133 (261)
.|.-+.+|..+..++....++.....+.+-.+++-+-.+++.+++..+++.--+....++++
T Consensus 46 ~~~~~~lP~~l~~~lP~~~lia~~~~l~~L~~~~El~a~~a~GiS~~~l~~p~i~~~l~~~~ 107 (354)
T PF03739_consen 46 KYILYNLPYILSLILPLAFLIAVLLTLGRLSRNNELVAMRASGISLKRLLRPIIIFALLLSL 107 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 36667788888888887777777777777788888899999999998877655554444443
No 46
>COG0795 Predicted permeases [General function prediction only]
Probab=41.97 E-value=1.8e+02 Score=26.69 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHHH
Q psy17042 73 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134 (261)
Q Consensus 73 y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~i 134 (261)
+..+.+|..+...+.+..++.+..++.+-.++.-+--+++++++++.++.--.....+++++
T Consensus 53 l~~l~iP~~l~~~lP~a~lia~l~~l~~L~~~sEl~vl~A~GvS~~~li~p~l~~al~~~~l 114 (364)
T COG0795 53 LLLLSLPTLLPLVLPLALLIAALLTLGRLSRESELVVLRASGVSLKRLLRPVLILALLLSLL 114 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666666666666666666668889999999999887655555555433
No 47
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=38.91 E-value=1.8e+02 Score=26.62 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy17042 73 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMC 133 (261)
Q Consensus 73 y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~~~~~~ 133 (261)
|.-+.+|..+...+.+..+..+...+.+-.++.-+-.++++++|.++++.--+....+++.
T Consensus 53 ~~~~~lP~~l~~~lP~a~lla~l~~l~~L~~~sEl~a~ra~GiS~~ri~~p~l~~a~~~~~ 113 (356)
T PRK15071 53 YTLLSVPKDIEIFFPMAALLGALIGLGMLASRSELVVMQASGFSRLQIALSVMKTAIPLVL 113 (356)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHhHcCCCHHHHHHHHHHHHHHHHH
Confidence 5667778888888877777666677777777777889999999999887755544444443
No 48
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=34.72 E-value=3.1e+02 Score=25.23 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=40.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHhcCCChHHHHHHHHHHH
Q psy17042 73 FTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQ 128 (261)
Q Consensus 73 y~~~~~p~~i~~~~~~~~~~~~~~~i~~Er~~gtl~~ll~~p~~~~~il~gk~l~~ 128 (261)
|.-+.+|..+...+.+..+..+..++.+-.++.-+-.+++++++.+++..--+...
T Consensus 51 ~~~l~lP~~l~~~lP~a~lla~ll~lgrL~~~sEl~alrA~GiS~~ri~~p~l~~a 106 (366)
T PRK15120 51 LLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILA 106 (366)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55667788888777776666666666666666668889999999988765444333
No 49
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=1.7e+02 Score=20.78 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17042 184 ILTILQGLCGMCFGFVIS 201 (261)
Q Consensus 184 l~~~l~~~~~~~lg~~is 201 (261)
++..+..++....|++++
T Consensus 8 l~ivl~ll~G~~~G~fia 25 (71)
T COG3763 8 LLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555666666665
No 50
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=21.46 E-value=7.4e+02 Score=23.88 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=22.9
Q ss_pred HHHHHHHHHHh-ChhHHHHhcCCChHHHHHHHH
Q psy17042 94 TSSALIIERME-GLLDRSWVAGVTPLEILFSHV 125 (261)
Q Consensus 94 ~~~~i~~Er~~-gtl~~ll~~p~~~~~il~gk~ 125 (261)
++.....-+.. |.+|.++..|+++.+...+..
T Consensus 48 t~~~~~~~~s~~~~~epL~~LPI~~~~~~ls~~ 80 (449)
T PF09847_consen 48 TSLNVSYFFSSIGIFEPLLTLPIKRSTLYLSVL 80 (449)
T ss_pred HHHHHHHHHhhhhhhhhhhcCCccchhHHHHHH
Confidence 33333344455 789999999999998887755
Done!