Query psy17042
Match_columns 261
No_of_seqs 192 out of 1936
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:19:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cni_A Putative ABC type-2 tra 97.3 0.00011 3.6E-09 58.9 3.2 82 3-87 67-153 (156)
2 3i0u_A Phosphothreonine lyase 12.7 3.9E+02 0.013 21.8 5.6 60 9-68 127-191 (218)
3 3g85_A Transcriptional regulat 12.5 2.2E+02 0.0075 23.0 4.5 40 1-40 1-41 (289)
4 1wjw_A Phosphoacetylglucosamin 12.5 2.6E+02 0.009 20.1 4.4 19 7-25 63-81 (112)
5 3bo6_A Hydrophilic protein, VI 11.6 3.7E+02 0.013 22.0 5.2 61 9-69 129-194 (220)
6 2p1w_A 27.5 kDa virulence prot 11.5 3.5E+02 0.012 22.6 5.1 61 9-69 159-224 (250)
7 2p8i_A Putative dioxygenase; Y 8.1 3.6E+02 0.012 20.0 3.6 32 1-32 2-33 (117)
8 2peb_A Putative dioxygenase; s 6.9 4.3E+02 0.015 19.7 3.6 31 1-32 2-32 (122)
9 4ev6_A Magnesium transport pro 5.5 5.7E+02 0.02 21.8 4.2 12 163-174 294-305 (339)
10 4e17_B Catenin alpha-1; four h 4.5 4.8E+02 0.016 15.5 2.0 15 27-41 22-36 (40)
No 1
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=97.33 E-value=0.00011 Score=58.95 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=52.0
Q ss_pred hhhhhcCCCceEEEE--Eccc---cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCCCCceeecccccCCCCCchhhH
Q psy17042 3 KKNTLKTKKEICEVL--HQEC---DQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFV 77 (261)
Q Consensus 3 ~~~l~~g~~~~i~v~--~d~s---~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~n~~~~y~~~~ 77 (261)
+|++.+|+++++++| +|++ +...++.+.++++.+.....+..... +..++....|++++.+.+.+++. |.+ +
T Consensus 67 s~~l~~g~~~~i~v~~~~d~~~~~~~~~~~~~~~y~~~i~~~~~~~~~~~-~~~~~~~~~Pi~~~~~~~~~~~~-~~~-~ 143 (156)
T 3cni_A 67 SQSLESGEKARLEIVWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLND-PKKAQLLFDPLEIVQHTYLRGSL-FKN-H 143 (156)
T ss_dssp HHHHHHTCCEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHTTGGGGSSC-STTSGGGTCCEEEEEEEEETTEE-ETT-C
T ss_pred HHHHhCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHhCCeeeeEEEEEcCce-ecc-C
Confidence 478899999999997 8888 55555555555544422211111111 33344456899998877765433 689 9
Q ss_pred HHHHHHHHHH
Q psy17042 78 APGVILTIVF 87 (261)
Q Consensus 78 ~p~~i~~~~~ 87 (261)
.|++++.+++
T Consensus 144 ~p~~i~~~~~ 153 (156)
T 3cni_A 144 SPEAIMNVFY 153 (156)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 9998876654
No 2
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=12.71 E-value=3.9e+02 Score=21.81 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCCceEEEEE--ccccchhHHHHHHHHHHHHHHHHHHHHhh---cCCCCCcCCCCceeecccccC
Q psy17042 9 TKKEICEVLH--QECDQQIGLMLNRDLQLSYRDFAQDLLST---CDQNPKIADIPIQFKEPIYGS 68 (261)
Q Consensus 9 g~~~~i~v~~--d~s~~~~~~~~~~~v~~i~~~~~~~~~~~---~~~~~~~~~~pi~~~~~~~~n 68 (261)
+..+++++|. |..|...+......+.+.+.....++... .|..|+-...|-..+.-.|-|
T Consensus 127 ~~GAQfTLY~Kpd~eds~Ys~~~l~k~r~fi~~iE~~L~~agi~pg~~P~SDV~p~~W~yaSYRN 191 (218)
T 3i0u_A 127 GIGAQFTLYVKSDQECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRN 191 (218)
T ss_dssp CSSCCEEEEEECCSSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEEE
T ss_pred cccceEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCccccceeeehh
Confidence 4456777777 77777776666677777777777666542 344444334454443333334
No 3
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=12.54 E-value=2.2e+02 Score=22.97 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=18.7
Q ss_pred CchhhhhcCCCceEEEEEc-cccchhHHHHHHHHHHHHHHH
Q psy17042 1 MSKKNTLKTKKEICEVLHQ-ECDQQIGLMLNRDLQLSYRDF 40 (261)
Q Consensus 1 ~~~~~l~~g~~~~i~v~~d-~s~~~~~~~~~~~v~~i~~~~ 40 (261)
||-|.+.++++..|.+... ..+......+.+.+++...+.
T Consensus 1 ~s~R~L~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~ 41 (289)
T 3g85_A 1 MSLRSKNSQSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ 41 (289)
T ss_dssp ----------CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT
T ss_pred CcchhcccCCCceEEEEeccccchHHHHHHHHHHHHHHHHc
Confidence 8889999999999999986 333334445555666655554
No 4
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=12.52 E-value=2.6e+02 Score=20.13 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=15.0
Q ss_pred hcCCCceEEEEEccccchh
Q psy17042 7 LKTKKEICEVLHQECDQQI 25 (261)
Q Consensus 7 ~~g~~~~i~v~~d~s~~~~ 25 (261)
-+|..|.+.+|..+.+...
T Consensus 63 pSGTEP~irvy~Ea~~~~~ 81 (112)
T 1wjw_A 63 PSGTEDIVRVYAEANSQES 81 (112)
T ss_dssp CSSSSSSEEEEEEESSHHH
T ss_pred eCCCccEEEEEEEECCHHH
Confidence 3688999999998876543
No 5
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=11.61 E-value=3.7e+02 Score=21.96 Aligned_cols=61 Identities=11% Similarity=0.039 Sum_probs=36.9
Q ss_pred CCCceEEEEE--ccccchhHHHHHHHHHHHHHHHHHHHHhh---cCCCCCcCCCCceeecccccCC
Q psy17042 9 TKKEICEVLH--QECDQQIGLMLNRDLQLSYRDFAQDLLST---CDQNPKIADIPIQFKEPIYGSN 69 (261)
Q Consensus 9 g~~~~i~v~~--d~s~~~~~~~~~~~v~~i~~~~~~~~~~~---~~~~~~~~~~pi~~~~~~~~n~ 69 (261)
+..+++++|. |..|...+........+.+..+..++... .|..|+-...|-..+.-.|-|+
T Consensus 129 ~~GAQfTLY~Kpd~edsqYs~~~l~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~~W~yaSYRNE 194 (220)
T 3bo6_A 129 AVGAQFTLYVKPDQENSQYSASSLHNTRQFIECLESRLSESGLMPGQYPESDVHPENWKYVSYRNE 194 (220)
T ss_dssp TSSCCEEEECCCSSTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEEET
T ss_pred cccceEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCccccceeeehhh
Confidence 4457788887 77777776666677777777777666542 3444544445544433333343
No 6
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=11.50 E-value=3.5e+02 Score=22.56 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=37.6
Q ss_pred CCCceEEEEE--ccccchhHHHHHHHHHHHHHHHHHHHHhh---cCCCCCcCCCCceeecccccCC
Q psy17042 9 TKKEICEVLH--QECDQQIGLMLNRDLQLSYRDFAQDLLST---CDQNPKIADIPIQFKEPIYGSN 69 (261)
Q Consensus 9 g~~~~i~v~~--d~s~~~~~~~~~~~v~~i~~~~~~~~~~~---~~~~~~~~~~pi~~~~~~~~n~ 69 (261)
+..+++++|. |..|.+++........+.+.....++... .|..|+-...|-..+.-.|-|+
T Consensus 159 ~~GAQfTLY~Kpd~edsqYs~~~l~k~r~fi~~lE~~L~~aGi~pg~~P~SDV~p~~W~yaSYRNE 224 (250)
T 2p1w_A 159 SLGAQFTLYIKPDQENSQYSASFLHKTRQFIECLESRLSENGVISGQCPESDVHPENWKYLSYRNE 224 (250)
T ss_dssp CSSCCEEEECCCSSTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEEET
T ss_pred cccceEEEEecCccccccCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCccccceeeehhh
Confidence 4567888888 77777777666677787887777766542 3444544445544443334443
No 7
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=8.08 E-value=3.6e+02 Score=19.96 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=19.2
Q ss_pred CchhhhhcCCCceEEEEEccccchhHHHHHHH
Q psy17042 1 MSKKNTLKTKKEICEVLHQECDQQIGLMLNRD 32 (261)
Q Consensus 1 ~~~~~l~~g~~~~i~v~~d~s~~~~~~~~~~~ 32 (261)
|++.+...=+.=...+|+|.+....+..+++.
T Consensus 2 M~~~~~~~i~~yHaHVYfd~~~~~~A~~Lre~ 33 (117)
T 2p8i_A 2 MTFRDTSAIASWHAHVYFDASSRDAAWTLREQ 33 (117)
T ss_dssp CCCCCGGGCCEEEEEEEECGGGHHHHHHHHHH
T ss_pred CCCcCCCCcCceEEEEecCHHHHHHHHHHHHH
Confidence 44444555566778999987655444444433
No 8
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=6.88 E-value=4.3e+02 Score=19.72 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=17.8
Q ss_pred CchhhhhcCCCceEEEEEccccchhHHHHHHH
Q psy17042 1 MSKKNTLKTKKEICEVLHQECDQQIGLMLNRD 32 (261)
Q Consensus 1 ~~~~~l~~g~~~~i~v~~d~s~~~~~~~~~~~ 32 (261)
|++ +...=+.=...+|+|.+....+..+++.
T Consensus 2 m~~-~~~~i~~yHaHVYfd~~~~~~A~~Lre~ 32 (122)
T 2peb_A 2 MKE-DTIEIAGFHAHVYFDAASRDVAARVREG 32 (122)
T ss_dssp -CC-CGGGCCEEEEEEEECGGGHHHHHHHHHH
T ss_pred CCC-CCCCcCceEEEEecCHHhHHHHHHHHHH
Confidence 444 4444456678999987655444444433
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.49 E-value=5.7e+02 Score=21.85 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=8.2
Q ss_pred Hhhhcccccccc
Q psy17042 163 ILQGLCGMCFVE 174 (261)
Q Consensus 163 ~~~~~~~~~~~~ 174 (261)
++-|+.||+|.+
T Consensus 294 ~IaGiyGMNf~~ 305 (339)
T 4ev6_A 294 WITGIYGMNFSY 305 (339)
T ss_dssp HHHHHTTCCCSC
T ss_pred HHHhhccCcCCC
Confidence 345777888875
No 10
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=4.46 E-value=4.8e+02 Score=15.52 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy17042 27 LMLNRDLQLSYRDFA 41 (261)
Q Consensus 27 ~~~~~~v~~i~~~~~ 41 (261)
+.+++++|..+.+|.
T Consensus 22 navrqALQdLlseY~ 36 (40)
T 4e17_B 22 NAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666666654
Done!