RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17042
(261 letters)
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 49.2 bits (118), Expect = 4e-07
Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 31/208 (14%)
Query: 23 QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVI 82
Q+ +L R+ +RD + LL P + + ++G+ D S PG++
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRL-IQPLLMALVFGT---VFGNLDTSLGGLNRPGLL 56
Query: 83 LTIVFFLAV-ALTSSALIIERMEGLLDRSWVAGV-TPLEILFSHVITQFVVMCGQTALVL 140
+ F A +LT + + R G+L+R + + +P + + ++ + + Q + L
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 141 IFMIFVFGVECKGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVI 200
+ + F+ G+ L +++ +L L G I
Sbjct: 117 LIVYFMVGLP-------------------------VSRFFLFLLVLLLTALAASGLGLFI 151
Query: 201 SAICELERNAIQLALGSFYPTLLLSGCF 228
+A+ +A Q+ P LLLSG F
Sbjct: 152 AALAPSFEDASQIGPLLLLPLLLLSGFF 179
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 48.8 bits (116), Expect = 7e-07
Identities = 37/106 (34%), Positives = 54/106 (50%)
Query: 67 GSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVI 126
+ + F+ PGVIL V F + SSAL ER G L+R V+ V+ L IL ++
Sbjct: 80 SNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139
Query: 127 TQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTILQGLCGMCF 172
VV LVL+ + F+ GV G LLL+++L +L L +
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVAL 185
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 43.5 bits (103), Expect = 4e-05
Identities = 30/159 (18%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 53 KIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWV 112
+ + P+ + + + + ++ ++L ++ + + + +++ E+ + +R V
Sbjct: 73 ALKNAPVNVEITPLFNPNSGYAYYLLG-LLLFLLILIGALIIALSIVEEKESRIKERLLV 131
Query: 113 AGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECK-GDLLLVIILTILQGLCGMC 171
+GV+PL+ L ++ +V Q +LI ++ +FG+ G+LLL+++L +L GL +
Sbjct: 132 SGVSPLKYLLGKILGDLLVGLIQ---LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIA 188
Query: 172 F-------VECKGDLLLVIILTILQGLCGMCFGFVISAI 203
+ +LVI + IL F + +
Sbjct: 189 LGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNM 227
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 31.8 bits (72), Expect = 0.39
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 9 TKKEICEVLHQECDQQIGLMLN--RDLQLSYRDFAQDLLSTC-----DQNPKIADIPIQF 61
++ I +++ + + G +L+ +DLQL ++ +LLS C + ++ P +
Sbjct: 13 LRRIITQLIRSKFAYKKGWLLDNIKDLQL--ANYLIELLSNCFAKKANSKAGVSRPPQLW 70
Query: 62 KEPI---YGSNDPSFTDFVAPGVILTIVFFLA 90
+ + G T+ F L
Sbjct: 71 TDESKNKNFFRLELYPFKSKHGERATMQFILN 102
>gnl|CDD|232788 TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family.
The seed members for this model are a paralogous family
of Mycobacterium tuberculosis. Nearly all proteins
scoring above the noise cutoff are from high-GC
Gram-positive organisms. The members of this paralogous
family of efflux proteins are all found in operons with
ATP-binding chain partners. They are related to a
putative daunorubicin resistance efflux protein of
Streptomyces peucetius. This model represents a branch
of a larger superfamily that also includes NodJ, a part
of the NodIJ pair of nodulation-triggering signal efflux
proteins. The members of this branch may all act in
antibiotic resistance.
Length = 232
Score = 30.9 bits (70), Expect = 0.53
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 72 SFTDFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVV 131
F+ + L + + A+ +R G L R + L IL + V
Sbjct: 34 RGATFIPVLMALAAISTAFT-GQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAV-VA 91
Query: 132 MCGQTALVLIFMIFVFGVECKGDLLLVIILTIL 164
L+L+ + FV G G L + L +
Sbjct: 92 RVFLQTLILLVIGFVLGFRFAGGALTALTLGAV 124
>gnl|CDD|225146 COG2237, COG2237, Predicted membrane protein [Function unknown].
Length = 364
Score = 30.8 bits (70), Expect = 0.65
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 76 FVAPGVILTIVFFLAVALTSSALIIER-MEGLLDRSWVAGVTPLEILFSHVITQFVVMCG 134
G ++ I+ + + + ++ + LL+R A ++V+ +++
Sbjct: 180 LYPAGAVIGILLIVGLYMLYKGFGLDDLVAELLERVREALYEGRVSFITYVVAGLLLI-- 237
Query: 135 QTALVLIFMIFVFGVECKGDLLLVIILTIL 164
+ + LL I IL
Sbjct: 238 ----LGGASSLTIALSSSAGALLAISTFIL 263
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 28.2 bits (63), Expect = 4.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 31 RDLQLSYRDFAQDLLSTCDQN 51
RD ++Y AQDLL T D
Sbjct: 58 RDPVMNYPAMAQDLLDTLDAL 78
>gnl|CDD|227811 COG5524, COG5524, Bacteriorhodopsin [General function prediction
only].
Length = 285
Score = 27.8 bits (62), Expect = 5.4
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 106 LLDRSWVAGVTPLEILFSHVITQFVVMCGQTALV 139
LL +AG + I +++ G A +
Sbjct: 117 LLYLGLLAGTSLWTIAGVVAADIIMIVTGLAAAL 150
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 28.0 bits (63), Expect = 5.5
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 155 LLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLC---------------------- 192
L+++ +L +L GL G+ + +L ++L + QG
Sbjct: 276 LVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALS 335
Query: 193 GM--CFGFVISAICELERNAIQLALGSFYPTLLL 224
GM G++++A + A GS+ L+L
Sbjct: 336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369
>gnl|CDD|165774 PLN00209, PLN00209, ribosomal protein S27; Provisional.
Length = 86
Score = 25.9 bits (57), Expect = 8.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 120 ILFSHVITQFVVMCGQTALVL 140
+FSH +Q VV+CG VL
Sbjct: 47 TVFSH--SQTVVVCGSCQTVL 65
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel. This
family of ion channels contains 10 or 12 transmembrane
helices. Each protein forms a single pore. It has been
shown that some members of this family form homodimers.
In terms of primary structure, they are unrelated to
known cation channels or other types of anion channels.
Three ClC subfamilies are found in animals. ClC-1 is
involved in setting and restoring the resting membrane
potential of skeletal muscle, while other channels play
important parts in solute concentration mechanisms in
the kidney. These proteins contain two pfam00571
domains.
Length = 345
Score = 27.1 bits (61), Expect = 9.0
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 153 GDLLLVIILTILQGLCGMCFVEC---------KGDLLLVIILTILQGLCGMCFGFVISAI 203
+L L I+L IL GL G FV + L I+ L GL G + +
Sbjct: 159 LELPLFILLGILCGLLGALFVRLLLKVERLFRRLKKLPPILRPALGGLLVGLLGLFLPEV 218
Query: 204 CELERNAIQLALGSFYPTLLLS 225
IQL L +LLL
Sbjct: 219 LGGGYGLIQLLLNGSTLSLLLL 240
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 27.3 bits (61), Expect = 9.2
Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 35/172 (20%)
Query: 51 NPKIADIPIQFKEPIYGSNDPSFTDF--------VAPGVILTIVFFL-----------AV 91
+ ++P + + P + S S T+ + P L + F L +
Sbjct: 324 DEDKEEVPTKLRNPKFISPFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGL 383
Query: 92 ALTSSALIIERMEGLLDRSWVAGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVEC 151
L +L++ R + G+ L + + + F++G E
Sbjct: 384 LLFLISLLLLR---YFKKRLPEGLKKLGKIL--LYLGISTI---------IWGFLYG-EF 428
Query: 152 KGDLLLVIILTILQGLCGMCFVECKGDLLLVIILTILQGLCGMCFGFVISAI 203
G +L+ L I E ++IL++L G+ + G ++ I
Sbjct: 429 FGPAVLLSTLPIGLLFVYHGLDE-GLLFSNILILSLLIGVLHLSLGLLLGFI 479
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.145 0.438
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,174,347
Number of extensions: 1293516
Number of successful extensions: 1775
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 74
Length of query: 261
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 166
Effective length of database: 6,723,972
Effective search space: 1116179352
Effective search space used: 1116179352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.0 bits)