RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17042
(261 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 8e-05
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 54/156 (34%)
Query: 31 RDLQLSYRDFAQDLLSTCDQN-PKIADIPIQFKEPIYGS--------NDPSFTDFVAPGV 81
RDL +Y DL+ + ++ + E ++ +PS P
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDA-EKVFTQGLNILEWLENPS----NTPDK 228
Query: 82 ILTIVFFLAVALTSSALIIERMEGLLDRSW------VAGVTPLEILFSH----------V 125
+L S LI G++ + + G TP E L S+ +
Sbjct: 229 D-----YLLSIPISCPLI-----GVIQLAHYVVTAKLLGFTPGE-LRSYLKGATGHSQGL 277
Query: 126 ITQFVVMCGQT----------ALVLIFMIFVFGVEC 151
+T + + A+ ++F I GV C
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFI---GVRC 310
Score = 39.3 bits (91), Expect = 0.001
Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 53/147 (36%)
Query: 23 QQIGLMLNRDLQLSYRDF--AQDLLSTCDQ----------------NPKIADIPIQFKEP 64
Q+ G M DL Y+ AQD+ + D NP ++ I F
Sbjct: 1627 QEQG-M-GMDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV--NLTIHFGGE 1679
Query: 65 ----IYGSNDPSFT-DFVAPGVILTIVFFLAVALTSSALIIERMEGLLDRSWVAGVTPLE 119
I N + + + G + T F + S++ +GLL
Sbjct: 1680 KGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---------- 1728
Query: 120 ILFSHVITQFVVMCGQTALVLI-FMIF 145
TQF Q AL L+ F
Sbjct: 1729 -------TQFT----QPALTLMEKAAF 1744
Score = 33.1 bits (75), Expect = 0.095
Identities = 45/289 (15%), Positives = 85/289 (29%), Gaps = 92/289 (31%)
Query: 33 LQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFVAPGVILTIVFFLAVA 92
L L +F L D + A + + + + + +I + A
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE----------LIKN--YITARI 131
Query: 93 LTSSALIIERMEGLLDRSWVAGVTPLEILF--------------------SHVITQFVVM 132
+ ++ L R+ G L +F ++ +
Sbjct: 132 MAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 133 CGQTALVLIFM------IFVFGVECKG-----------DLLLVI-----ILTILQGLCGM 170
+T LI +F G+ D LL I ++ ++Q L
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LA-- 247
Query: 171 CF-VECK------GDLLLVIILTILQGLCGMCFGFVISAICELERNAIQLALG--SFYPT 221
+ V K G+L + L+G G +++A+ AI SF+ +
Sbjct: 248 HYVVTAKLLGFTPGEL-----RSYLKGATG-HSQGLVTAV------AIAETDSWESFFVS 295
Query: 222 -------LLLSGCFKNMVYPVNLAICELERNAIQLAL--GSFYPTLLLS 261
L G YP L + ++ +L P+ +LS
Sbjct: 296 VRKAITVLFFIGVRCYEAYPN----TSLPPSILEDSLENNEGVPSPMLS 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 24/214 (11%), Positives = 57/214 (26%), Gaps = 74/214 (34%)
Query: 18 HQECDQQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIADIPIQFKEPIYGSNDPSFTDFV 77
H D + G Q Y+D N D+ + I + +
Sbjct: 4 HHHMDFETGEH-----QYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEE--IDHII 55
Query: 78 -APGVILTIVFFLAVALTSSALIIER-MEGLL--DRSWVAG----------------VTP 117
+ + + L+ ++++ +E +L + ++ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 118 LEILFS--------HVI-----------------TQFVV---M--CGQTALVL------- 140
+ L++ +V + V+ + G+T + L
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 141 IFMIFVFGV------ECKGDLLLVIILTILQGLC 168
+ F + C +L +LQ L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET---VLEMLQKLL 206
Score = 41.4 bits (96), Expect = 2e-04
Identities = 47/383 (12%), Positives = 110/383 (28%), Gaps = 134/383 (34%)
Query: 4 KNTLKTKKEICEVLHQECDQQ-----IGLMLNRDLQLSYRDFAQDLLST----------- 47
K+ L +K+EI ++ + +L++ ++ + F +++L
Sbjct: 43 KSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKT 100
Query: 48 -CDQNPKIADIPIQFKEPIYGSNDPSFTDFV------------------APGVI------ 82
Q + + I+ ++ +Y N V A V+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 83 -----LTI---------------VFFLAVALTSSA-LIIERMEGL---LDRSWVAGV--- 115
+ + +F+L + +S ++E ++ L +D +W +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 116 ----TPLEILFSHVITQFVVMCGQTALVLIF-------MIFVFGVECKGDLLLVI----- 159
+ + + + + L L+ F + CK +L+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCK---ILLTTRFKQ 276
Query: 160 ILTILQGL---------CGMCFVECKG-DLLLVIILTILQGL----CGMCFGFVISAICE 205
+ L M + LLL + Q L +S I E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRRLSIIAE 335
Query: 206 LERN------------------AIQLALGSFYPTLLLSGCFKNM-VYPVNLAI------- 239
R+ I+ +L P F + V+P + I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 240 --CELERNAIQLALGSFYPTLLL 260
++ ++ + + + + L+
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLV 417
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.97
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 11/33 (33%)
Query: 23 QQIGLMLNRDLQLSYRDFAQDLLSTCDQNPKIA 55
Q + + LQ S + +A D S P +A
Sbjct: 20 QAL-----KKLQASLKLYADD--SA----PALA 41
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 26.9 bits (60), Expect = 9.2
Identities = 4/51 (7%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 113 AGVTPLEILFSHVITQFVVMCGQTALVLIFMIFVFGVECKGDLLLVIILTI 163
G V+ + + + +++V ++ ++ T+
Sbjct: 281 GGSGHFTE----VLNGIGTILLILVIFTLLIVWVSSFYRSNPIVQILEFTL 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.145 0.438
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,844,507
Number of extensions: 224843
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 14
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.5 bits)