RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17042
         (261 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 27.1 bits (59), Expect = 2.6
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 168 CGMCFVECKG-----DL--------LLVIILTILQGLCGMCFGFVISAICELERNAIQLA 214
           C     EC G     DL         +  I  + + +C  C   ++    EL R A+ + 
Sbjct: 69  CQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIK 128

Query: 215 LGSFYPTLLLSGCFKNMVYPVNLAICELERNAIQ 248
                   + + C   MV   ++   +     + 
Sbjct: 129 DSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVS 162


>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
          Length = 215

 Score = 26.1 bits (56), Expect = 3.9
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 189 QGLCGMCFGFVISAICELE-RNAIQLALGSFYPTLLLSGCFKN 230
           QG CG C+ F  SAI  +E +  +     +     +L  C K 
Sbjct: 19  QGQCGSCWAF--SAIGNVECQWFLAGHPLTNLSEQMLVSCDKT 59


>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 24.8 bits (54), Expect = 6.3
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 21/74 (28%)

Query: 98  LIIERMEGLLDRSWVAGVTPLEI--LFSHVITQFV--VMCGQTALVL------------- 140
           ++ E +E   +RSW  G+  LE   +       +V   + G+ A+V+             
Sbjct: 50  IVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMV 109

Query: 141 ----IFMIFVFGVE 150
               + MIF  GVE
Sbjct: 110 QEPGLVMIFAHGVE 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.145    0.438 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 929,416
Number of extensions: 41708
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 7
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.3 bits)