BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17045
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVE2|ROGDI_DROME Protein rogdi OS=Drosophila melanogaster GN=rogdi PE=1 SV=2
Length = 268
Score = 254 bits (649), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/210 (59%), Positives = 160/210 (76%), Gaps = 4/210 (1%)
Query: 1 MTEVEKEEALCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIIL 60
+ + E+EEAL LQ EFEWV+ +EVH ILKQL++ILVEC+ RFP+ L+ NEG K++K IL
Sbjct: 4 LADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLYENEGK-KTEKFIL 62
Query: 61 ASSQDTLKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHL 120
S D LK ++ L GD+I+ ADI K+ + +QT +TSI + PWKL Q+QDA NHL
Sbjct: 63 TVSPDQLKAVLTLTGDAITQADISFKLCKA---PSQTQRTSITHDSPWKLQQVQDAANHL 119
Query: 121 QFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSL 180
Q A+ HID+VDD Y FK+S+EVLH + NIL+ LQRGR SL+VP+K+ ID+L+K RNMKSL
Sbjct: 120 QTAINHIDDVDDSYHFKTSDEVLHVIGNILDALQRGRNSLLVPKKKPIDELIKGRNMKSL 179
Query: 181 TPPLPEDLAISFYIQSHKLICAAYQLSNVQ 210
P LPEDLA+SFY+QSHKLI A YQL N Q
Sbjct: 180 VPNLPEDLAVSFYLQSHKLIIAVYQLLNNQ 209
>sp|Q7ZVT5|ROGDI_DANRE Protein rogdi homolog OS=Danio rerio GN=rogdi PE=2 SV=1
Length = 284
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 5/211 (2%)
Query: 1 MTEVEKEEALCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIIL 60
MT + E L++EF W++ +EVH +LKQLQ IL E SRR + G EG K + IL
Sbjct: 1 MTAASQAERTVLEEEFNWLLKEEVHAVLKQLQDILKEASRRLSMPSPGLEGQLKQENFIL 60
Query: 61 ASS-QDTLKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNH 119
SS D +K ++ L G++++ ADI++K+ + +Q + + WKL QIQDA NH
Sbjct: 61 GSSTMDQVKGVLTLQGEALTQADINIKVAK----SSQVMHFAFRDDKQWKLQQIQDARNH 116
Query: 120 LQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKS 179
+ AL + + DD Y FK+ EV +D I+ L R R L P T+ +L S MK
Sbjct: 117 VNQALQLLSSRDDSYHFKTGAEVNKLMDAIMLQLTRARNRLTTPASMTLPELAASGLMKM 176
Query: 180 LTPPLPEDLAISFYIQSHKLICAAYQLSNVQ 210
TPP+P D+ ++FYI KL YQL +Q
Sbjct: 177 FTPPMPGDVMVNFYINLSKLCLTVYQLHVLQ 207
>sp|Q5R7X1|ROGDI_PONAB Protein rogdi homolog OS=Pongo abelii GN=ROGDI PE=2 SV=1
Length = 287
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 120/204 (58%), Gaps = 5/204 (2%)
Query: 8 EALCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILAS-SQDT 66
E L++EF W+++ EVH +LKQLQ IL E S RF L G EGP K + IL S D
Sbjct: 11 ERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQ 70
Query: 67 LKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYH 126
+K ++ L GD++S AD++LK+ R++Q T++ ++ WKL QIQDA NH+ A+Y
Sbjct: 71 VKGVLTLQGDALSQADVNLKMPRNNQLLHFTFR----EDKQWKLQQIQDARNHVSQAIYL 126
Query: 127 IDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPE 186
+ + D+ YQFK+ EVL +D ++ L R R L P T+ ++ S + P LP
Sbjct: 127 LISRDESYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPS 186
Query: 187 DLAISFYIQSHKLICAAYQLSNVQ 210
DL ++ YI +KL YQL +Q
Sbjct: 187 DLLVNVYINLNKLCLTVYQLHALQ 210
>sp|Q148F6|ROGDI_BOVIN Protein rogdi homolog OS=Bos taurus GN=ROGDI PE=2 SV=1
Length = 287
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 119/204 (58%), Gaps = 5/204 (2%)
Query: 8 EALCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILAS-SQDT 66
E L++EF W+++ EVH +L+QLQ IL E S RF L G EGP K + IL S D
Sbjct: 11 ERAVLEEEFRWLLHDEVHAVLRQLQDILKEASLRFTLPGSGTEGPTKQENFILGSCGTDQ 70
Query: 67 LKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYH 126
+K ++ L GD++S AD++LK+ R++Q ++ ++ WKL QIQDA NH+ A+Y
Sbjct: 71 VKGVLTLQGDALSQADVNLKMPRNNQLLHFAFR----EDKQWKLQQIQDARNHVSQAIYL 126
Query: 127 IDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPE 186
+ N D+ YQF++ EVL +D ++ L R R L P T+ ++ S + P LP
Sbjct: 127 LANRDESYQFRTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPTLPS 186
Query: 187 DLAISFYIQSHKLICAAYQLSNVQ 210
DL ++ YI +KL YQL +Q
Sbjct: 187 DLLVNVYINLNKLCLTVYQLHTLQ 210
>sp|Q9GZN7|ROGDI_HUMAN Protein rogdi homolog OS=Homo sapiens GN=ROGDI PE=2 SV=1
Length = 287
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 5/204 (2%)
Query: 8 EALCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILAS-SQDT 66
E L++EF W+++ EVH +LKQLQ IL E S RF L G EGP K + IL S D
Sbjct: 11 ERAVLEEEFRWLLHDEVHAVLKQLQDILKEASLRFTLPGSGTEGPAKQENFILGSCGTDQ 70
Query: 67 LKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYH 126
+K ++ L GD++S AD++LK+ R++Q ++ ++ WKL QIQDA NH+ A+Y
Sbjct: 71 VKGVLTLQGDALSQADVNLKMPRNNQLLHFAFR----EDKQWKLQQIQDARNHVSQAIYL 126
Query: 127 IDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPE 186
+ + D YQFK+ EVL +D ++ L R R L P T+ ++ S + P LP
Sbjct: 127 LTSRDQSYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPALPS 186
Query: 187 DLAISFYIQSHKLICAAYQLSNVQ 210
DL ++ YI +KL YQL +Q
Sbjct: 187 DLLVNVYINLNKLCLTVYQLHALQ 210
>sp|Q4V7D2|ROGDI_RAT Protein rogdi homolog OS=Rattus norvegicus GN=Rogdi PE=2 SV=1
Length = 287
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 117/200 (58%), Gaps = 5/200 (2%)
Query: 12 LQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILAS-SQDTLKTI 70
L++EF W+++ EVH +L+QLQ IL E S RF L EGP K + IL S D +K +
Sbjct: 15 LEEEFRWLLHAEVHAVLRQLQDILKEASLRFTLPGPSTEGPAKQENFILGSCGTDQVKGV 74
Query: 71 VNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNV 130
+ L GD++S AD++LK+ R++Q ++ ++ WKL QIQDA NH+ A+Y + N
Sbjct: 75 LTLQGDALSQADVNLKMPRNNQLLHFAFR----EDKQWKLQQIQDARNHVSQAIYLLANR 130
Query: 131 DDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPEDLAI 190
D+ YQFK+ EVL +D ++ L R R L P T+ ++ S + P LP DL +
Sbjct: 131 DESYQFKTGAEVLKLMDAVMLQLTRARNRLTTPATLTLPEIAASGLTRMFAPTLPSDLLV 190
Query: 191 SFYIQSHKLICAAYQLSNVQ 210
+ YI +KL YQL +Q
Sbjct: 191 NVYINLNKLCLTVYQLHTLQ 210
>sp|Q3TDK6|ROGDI_MOUSE Protein rogdi homolog OS=Mus musculus GN=Rogdi PE=2 SV=2
Length = 287
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 117/200 (58%), Gaps = 5/200 (2%)
Query: 12 LQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILAS-SQDTLKTI 70
L++EF W+++ EVH +L+QLQ IL E S RF L EGP K + IL S D +K
Sbjct: 15 LEEEFRWLLHAEVHAVLRQLQDILKEASLRFTLPGPSTEGPAKQENFILGSCGTDQVKGT 74
Query: 71 VNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNV 130
+ L GD++S AD++LK+ R++Q ++ ++ WKL QIQDA NH+ A+Y + N
Sbjct: 75 LTLQGDALSQADVNLKMPRNNQLLHLAFR----EDKQWKLQQIQDARNHVSQAIYLLANR 130
Query: 131 DDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPEDLAI 190
D+ YQFK+ EVL +D ++ L R R+ L P T+ ++ S + P LP DL +
Sbjct: 131 DESYQFKTGAEVLKLMDAVMLQLTRARSRLTTPATLTLPEIAASGLTRMFAPTLPSDLLV 190
Query: 191 SFYIQSHKLICAAYQLSNVQ 210
+ YI +KL YQL +Q
Sbjct: 191 NVYINLNKLCLTVYQLHALQ 210
>sp|O17213|ROGDI_CAEEL Protein rogdi homolog OS=Caenorhabditis elegans GN=H14A12.3 PE=3
SV=2
Length = 292
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 62 SSQDTLKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHL- 120
S D LK V L D++ A++ +K + + Y+ + WKL Q+QD GNH+
Sbjct: 91 GSSDNLKAAVTLLDDNVIQAEVTVK---YPKAGGGYYRAVAQPDVQWKLQQLQDLGNHIS 147
Query: 121 -----------QFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTID 169
+ L D D + + +L L +N + R S+++PRKR++
Sbjct: 148 RVTITLCDLQHEVNLLKGDGERDAFTLATGARILEELKLTMNEISLARNSIMLPRKRSLL 207
Query: 170 DLMKSRNMKSLTPPLPEDLAISFYIQSHKLICAAYQL 206
+L + PPLP+D ISFYI +L+CA+YQ+
Sbjct: 208 ELCYFPPTRKFVPPLPQDQLISFYISCCRLVCASYQM 244
>sp|Q6G547|TRUA_BARHE tRNA pseudouridine synthase A OS=Bartonella henselae (strain ATCC
49882 / Houston 1) GN=truA PE=3 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 105 EHPWKLHQIQDAGN-HLQ-----FALYHIDNVDDGYQFKSSEEVLHTLDNILN 151
E W+ H ++DA N HLQ A+ H+ NV D + + S H L ILN
Sbjct: 67 EKNWRTHTVRDALNAHLQKQGDNIAILHVQNVPDSFDARFSAIKRHYLFKILN 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,272,154
Number of Sequences: 539616
Number of extensions: 2950740
Number of successful extensions: 8259
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8235
Number of HSP's gapped (non-prelim): 14
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)