Query psy17045
Match_columns 211
No_of_seqs 91 out of 102
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:26:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10259 Rogdi_lz: Rogdi leuci 100.0 3.6E-52 7.9E-57 367.5 21.3 185 15-210 1-190 (273)
2 KOG3992|consensus 100.0 1.3E-49 2.8E-54 339.1 4.5 198 10-210 26-244 (314)
3 PF08654 DASH_Dad2: DASH compl 47.1 57 0.0012 25.1 5.3 79 110-188 16-97 (103)
4 PF05713 MobC: Bacterial mobil 42.5 68 0.0015 20.7 4.4 46 110-157 2-47 (48)
5 PF02561 FliS: Flagellar prote 37.4 47 0.001 25.5 3.6 45 111-155 43-87 (122)
6 KOG1088|consensus 31.8 73 0.0016 25.4 3.8 98 64-170 10-110 (124)
7 PF11944 DUF3461: Protein of u 28.9 79 0.0017 25.3 3.5 69 56-131 17-87 (125)
8 TIGR00208 fliS flagellar biosy 26.6 85 0.0018 24.5 3.4 44 113-156 47-90 (124)
9 COG0207 ThyA Thymidylate synth 26.5 1.6E+02 0.0034 26.6 5.4 58 143-207 113-171 (268)
10 PRK05685 fliS flagellar protei 24.1 96 0.0021 24.4 3.3 44 112-155 50-93 (132)
11 PRK08474 F0F1 ATP synthase sub 23.7 94 0.002 25.5 3.3 32 57-90 133-164 (176)
12 PF04652 DUF605: Vta1 like; I 21.8 1.7E+02 0.0038 26.5 5.0 38 110-154 343-380 (380)
13 PRK14640 hypothetical protein; 21.2 3.3E+02 0.0073 22.0 6.0 41 94-134 33-73 (152)
14 PF08651 DASH_Duo1: DASH compl 20.2 1.1E+02 0.0025 22.2 2.7 26 11-38 2-27 (78)
No 1
>PF10259 Rogdi_lz: Rogdi leucine zipper containing protein
Probab=100.00 E-value=3.6e-52 Score=367.46 Aligned_cols=185 Identities=37% Similarity=0.602 Sum_probs=173.7
Q ss_pred hhchhhhhhhHHHHHHHHHHHHHHhhhCCCccCCCCCCCCCceeeeccC-CCceeEEEEeecCeeeeeEEEEEeeccCCC
Q psy17045 15 EFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILASS-QDTLKTIVNLNGDSISFADIHLKIHRHHQH 93 (211)
Q Consensus 15 E~~WLl~~ev~~vl~~l~~~L~~c~~~l~~~~~~~~~~~~~eklvlss~-se~vKGvvtr~G~~I~~~di~lK~~~~~~~ 93 (211)
|++||+++||+++|++|+++|++|+++|+ +++ +++|||||++ +|+|||+|||+|++|++|||++|+++++
T Consensus 1 El~Wll~~~v~~~l~~l~~~L~~C~~lL~----~~~---~~~kl~lSs~~se~vKGvvTr~G~~Iv~~~i~lk~~~~~-- 71 (273)
T PF10259_consen 1 ELEWLLEEEVKPVLPQLIDGLEECLALLA----PSD---PGSKLVLSSPRSESVKGVVTRVGDRIVKGDITLKLPKFN-- 71 (273)
T ss_pred CcchHHhhhhHHHHHHHHHHHHHHHHhhC----CCC---CCceEEeccCCCCceEEEEEEeCCeEEeeEEEEEecCCC--
Confidence 89999999999999999999999999995 222 3689999996 7999999999999999999999999993
Q ss_pred CCceEEEEecCCCceehhHHHHHHHHHHHHHhccccCCCCc----cccchHHHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q psy17045 94 QTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVDDGY----QFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTID 169 (211)
Q Consensus 94 ~~~~~r~~i~~~~pw~LqQiq~~~n~l~~al~~l~~l~~~~----~f~~~~ev~~~l~~ll~~L~~Ar~~L~~P~~~~l~ 169 (211)
++ ++++++++.||+|+|||+++||+++|+++|+.+...+ .+++++++++.|+.++++|++||++|++|++++++
T Consensus 72 -~~-~~~~~~~~~p~~L~Qi~~~~n~l~~al~~L~~~~~~~~~~~~~~~~~~l~~~L~~l~~~L~~ar~~L~~P~~~~~~ 149 (273)
T PF10259_consen 72 -KG-QRLKINPDKPWKLQQIQDARNHLNQALDLLDDLQSIYDPEEFFKDANELLSQLRNLMNSLQEARNSLKLPSDPNLW 149 (273)
T ss_pred -Cc-eEEEECCCCCeehHHHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Confidence 33 7888999999999999999999999999999887655 78999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCeEEEEEeecceeEEEEeeccccC
Q psy17045 170 DLMKSRNMKSLTPPLPEDLAISFYIQSHKLICAAYQLSNVQ 210 (211)
Q Consensus 170 e~~~s~~~~~F~P~LP~dl~v~fyI~~~~Lv~~~y~l~~~~ 210 (211)
+.+++.++++|.||||+|++|+|||++|+||+++|+|++.+
T Consensus 150 ~~~~~~~~~~F~P~Lp~~ls~~~~I~~~~Lvl~~~~L~~~~ 190 (273)
T PF10259_consen 150 EPQSSPPSHSFCPPLPPDLSFDFYIQDNELVLDLRQLEPVT 190 (273)
T ss_pred ccccCCcccccCCCCCcceEEEEEEecceeeeeeeeeEEcc
Confidence 99999999999999999999999999999999999999876
No 2
>KOG3992|consensus
Probab=100.00 E-value=1.3e-49 Score=339.06 Aligned_cols=198 Identities=34% Similarity=0.560 Sum_probs=187.2
Q ss_pred HhhhhhhchhhhhhhHHHHHHHHHHHHHHhhhCCCccCCCCCC------CCCceeeecc---CCCceeEEEEeecCeeee
Q psy17045 10 LCLQKEFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGP------YKSDKIILAS---SQDTLKTIVNLNGDSISF 80 (211)
Q Consensus 10 ~~l~~E~~WLl~~ev~~vl~~l~~~L~~c~~~l~~~~~~~~~~------~~~eklvlss---~se~vKGvvtr~G~~I~~ 80 (211)
++.+.||.|+++.+|+.+|++..+.|++|+=+|..|....||. .++|||+|.| .+|++||++|+.||.++|
T Consensus 26 snkeeE~lWi~~ddVdatLkqaldhLKa~ci~fnL~akcdE~lnvavsh~kqEkf~L~srs~~sDnlKaalTLldDaliQ 105 (314)
T KOG3992|consen 26 SNKEEEFLWILHDDVDATLKQALDHLKAACIRFNLPAKCDEGLNVAVSHAKQEKFILGSRSCGSDNLKAALTLLDDALIQ 105 (314)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHHhheEEEecCcccccCcchhhhcccceeeEeeccccCcchhhhheeeccchhhh
Confidence 4578999999999999999999999999999999988777766 5789999985 369999999999999999
Q ss_pred eEEEEEeeccCCCCCceEEEEecCCCceehhHHHHHHHHHHHHHhccccC---------C---CCccccchHHHHHHHHH
Q psy17045 81 ADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNV---------D---DGYQFKSSEEVLHTLDN 148 (211)
Q Consensus 81 ~di~lK~~~~~~~~~~~~r~~i~~~~pw~LqQiq~~~n~l~~al~~l~~l---------~---~~~~f~~~~ev~~~l~~ 148 (211)
|||++|+|+. |++.||...++|++||||||||++||+.+|+.+|.++ | +.|.|++|.|+++.|+.
T Consensus 106 AdVnlK~Pka---ggg~~~aaaq~D~QWKLQQiQD~gNHiSqa~i~LcdlqhevnllkgDgerdafqfaTGAeiLeeld~ 182 (314)
T KOG3992|consen 106 ADVNLKMPKA---GGGLLHAAAQEDKQWKLQQIQDAGNHISQAIILLCDLQHEVNLLKGDGERDAFQFATGAEILEELDA 182 (314)
T ss_pred hheeeeccCC---CCceEeeeeCcchhHHHHHHHHhhhhhhHhHHhhhhhhhhhhhccCCccchheeehhHHHHHHHHHH
Confidence 9999999999 8999999999999999999999999999999999877 3 47899999999999999
Q ss_pred HHHHHHHhhhhccCCCCCCcccccccCCCCCCCCCCCCCeEEEEEeecceeEEEEeeccccC
Q psy17045 149 ILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPEDLAISFYIQSHKLICAAYQLSNVQ 210 (211)
Q Consensus 149 ll~~L~~Ar~~L~~P~~~~l~e~~~s~~~~~F~P~LP~dl~v~fyI~~~~Lv~~~y~l~~~~ 210 (211)
.|..|++|||++++|.+++++|++.++++++|.|+||.|+.|+|||+.|+|||++||||.-|
T Consensus 183 tM~eislARNrimlP~k~sLlEi~~f~~TRkFaP~LPqD~LinfYIncckL~casYQl~~kq 244 (314)
T KOG3992|consen 183 TMLEISLARNRIMLPAKLSLLEIAAFGLTRKFAPALPQDLLINFYINCCKLCCASYQLHAKQ 244 (314)
T ss_pred HHHHHHHHhhhccCchhccHHHHhhccchhccCCCCchHHhHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999765
No 3
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=47.07 E-value=57 Score=25.07 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHhcccc-CC-CCccccchHHHHHHHHHHHHHHHHhhhhccCCCCCCcccc-cccCCCCCCCCCCCC
Q psy17045 110 LHQIQDAGNHLQFALYHIDN-VD-DGYQFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDL-MKSRNMKSLTPPLPE 186 (211)
Q Consensus 110 LqQiq~~~n~l~~al~~l~~-l~-~~~~f~~~~ev~~~l~~ll~~L~~Ar~~L~~P~~~~l~e~-~~s~~~~~F~P~LP~ 186 (211)
|.||.+...++..-++.|.. +. ....-.+...|+..-.+|+..|+.|...|.-+....-..- .......-=.||||+
T Consensus 16 L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~~l~~~~~~~~~~~~~~~~~~~~~~~~lPe 95 (103)
T PF08654_consen 16 LKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMASLSLAKYSEGDYEEGAWDTSKDSESEPPLPE 95 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHhhhhhccccccccccccccccccCCCCCCc
Confidence 67888888888877777752 22 1222344677888899999999999888887765322221 111122225678887
Q ss_pred Ce
Q psy17045 187 DL 188 (211)
Q Consensus 187 dl 188 (211)
-|
T Consensus 96 tL 97 (103)
T PF08654_consen 96 TL 97 (103)
T ss_pred ce
Confidence 65
No 4
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=42.55 E-value=68 Score=20.72 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHHhh
Q psy17045 110 LHQIQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRGR 157 (211)
Q Consensus 110 LqQiq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~Ar 157 (211)
+.||.-++|+|+|.-..+.. ....-.+..+.++.+..+...|.+.+
T Consensus 2 ~reL~~ignNlNQiAk~~N~--~~~~~~~~~~~~~~L~~i~~~L~~l~ 47 (48)
T PF05713_consen 2 IRELNRIGNNLNQIAKHANS--GQVDEQEYEKLIEELREIEKELKELR 47 (48)
T ss_pred HHHHHHHhccHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999888886 11111223444566667777766654
No 5
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=37.35 E-value=47 Score=25.55 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHH
Q psy17045 111 HQIQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQR 155 (211)
Q Consensus 111 qQiq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~ 155 (211)
.++...++++..|.++|..+.....+..|-++-..|..+...+.+
T Consensus 43 ~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~ 87 (122)
T PF02561_consen 43 GDIEEKNEALQKAQDIITELQSSLDFEKGGEIADNLFRLYDYMIR 87 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHH
Confidence 367888999999999998776655566667777777777766644
No 6
>KOG1088|consensus
Probab=31.84 E-value=73 Score=25.37 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=59.8
Q ss_pred CCceeEEEEeec--CeeeeeEEEEEeeccCCCCCceEEEEecCCCceehhHHHHHHHHHHHHHhccccCCCCccccchHH
Q psy17045 64 QDTLKTIVNLNG--DSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVDDGYQFKSSEE 141 (211)
Q Consensus 64 se~vKGvvtr~G--~~I~~~di~lK~~~~~~~~~~~~r~~i~~~~pw~LqQiq~~~n~l~~al~~l~~l~~~~~f~~~~e 141 (211)
+-++||++|+ | =+++...+.+|--.| ++-+-..|=+.-.|+ -+..+...+.+.- |-.-.......+.++
T Consensus 10 sc~~k~~~s~-gFPL~l~~~k~~~~~vEF----nPdFl~~m~~kidW~--All~~A~~l~~~~--lP~~kPe~~~e~de~ 80 (124)
T KOG1088|consen 10 SCSVKKVVSV-GFPLRLVAKKVVEKEVEF----NPDFLIRMLPKIDWS--ALLEAARSLGNTE--LPDEKPEKLVEDDEE 80 (124)
T ss_pred hheeeccccc-CCceEEEeeEEEEEeeec----ChHHHHHhhhhccHH--HHHHHHHHhcccc--CCCCCccccccccHH
Confidence 4567777775 3 246666777777777 443332366677786 2223332222221 211112222334789
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCC-CCccc
Q psy17045 142 VLHTLDNILNCLQRGRTSLIVPRK-RTIDD 170 (211)
Q Consensus 142 v~~~l~~ll~~L~~Ar~~L~~P~~-~~l~e 170 (211)
++..|+.++-.+.-+.-.|+.|.. +-+|-
T Consensus 81 ~Lr~lHhlLle~~v~EG~l~CpetG~vfpI 110 (124)
T KOG1088|consen 81 FLRKLHHLLLEIDVIEGELVCPETGRVFPI 110 (124)
T ss_pred HHHHHHHHHhhhhhccceEecCCCCcEeec
Confidence 999999999999999999999966 44443
No 7
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=28.94 E-value=79 Score=25.31 Aligned_cols=69 Identities=13% Similarity=0.327 Sum_probs=51.3
Q ss_pred ceeeecc--CCCceeEEEEeecCeeeeeEEEEEeeccCCCCCceEEEEecCCCceehhHHHHHHHHHHHHHhccccCC
Q psy17045 56 DKIILAS--SQDTLKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVD 131 (211)
Q Consensus 56 eklvlss--~se~vKGvvtr~G~~I~~~di~lK~~~~~~~~~~~~r~~i~~~~pw~LqQiq~~~n~l~~al~~l~~l~ 131 (211)
++|.|.. ..|.+|=.--++-+....-.+-+|||+.. . +.......=.-.+++....++..|++.|+.+-
T Consensus 17 erytLR~Ea~~DILKIYfrk~kG~~fakS~KFKfpRq~----K---~v~~d~g~~~y~~v~Eis~~L~~vieELdqi~ 87 (125)
T PF11944_consen 17 ERYTLRQEANNDILKIYFRKQKGELFAKSVKFKFPRQR----K---TVLVDSGSQQYKEVSEISPNLRYVIEELDQIT 87 (125)
T ss_pred hheecccccCCCeEEEEEecCCcchhhhhcceeccCcc----c---eeeecCCCccceehhhccHHHHHHHHHHHHHH
Confidence 6777765 45999999999988888889999999982 2 12222222333488889999999999998764
No 8
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=26.58 E-value=85 Score=24.53 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHHh
Q psy17045 113 IQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRG 156 (211)
Q Consensus 113 iq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~A 156 (211)
+...++++..|.++|..+.....+..|-++-..|..+...+.+.
T Consensus 47 ~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggeiA~nL~~LY~y~~~~ 90 (124)
T TIGR00208 47 IERKNENLIKAQNIIQELNFTLDREKNIELSASLGALYDYMYRR 90 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHH
Confidence 66788889999998887766555666667777777776665543
No 9
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=26.47 E-value=1.6e+02 Score=26.58 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcc-cccccCCCCCCCCCCCCCeEEEEEeecceeEEEEeecc
Q psy17045 143 LHTLDNILNCLQRGRTSLIVPRKRTID-DLMKSRNMKSLTPPLPEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 143 ~~~l~~ll~~L~~Ar~~L~~P~~~~l~-e~~~s~~~~~F~P~LP~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
++++..+++.|.+.-++- +.+. -++-....+|= -.|=...+.||+.+.+|-|.+||=|
T Consensus 113 iDQi~~vIe~Lk~np~sR-----R~ivs~WnP~e~~~m~--l~PC~~l~qF~V~~gkL~~~lyqRS 171 (268)
T COG0207 113 IDQIDKVIEQLKENPDSR-----RAIVSAWNPGELDEMA--LPPCHILFQFYVRDGKLSCTLYQRS 171 (268)
T ss_pred cHHHHHHHHHHhcCCccc-----ceEEEecCcccccccc--CCCcEEEEEEEEECCEEEEEEEEec
Confidence 456788888777543221 1211 12222222222 2344678999999999999999855
No 10
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.09 E-value=96 Score=24.43 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHH
Q psy17045 112 QIQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQR 155 (211)
Q Consensus 112 Qiq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~ 155 (211)
.+...++++..|.++|..+.....+..|-++-+.|..+...+.+
T Consensus 50 ~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~ 93 (132)
T PRK05685 50 DIEAKGEYLSKAINIINGLRNSLDMEKGGEVAKNLSALYDYMIR 93 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHH
Confidence 36678888888888888776555555555666666666655544
No 11
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=23.71 E-value=94 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.022 Sum_probs=23.3
Q ss_pred eeeeccCCCceeEEEEeecCeeeeeEEEEEeecc
Q psy17045 57 KIILASSQDTLKTIVNLNGDSISFADIHLKIHRH 90 (211)
Q Consensus 57 klvlss~se~vKGvvtr~G~~I~~~di~lK~~~~ 90 (211)
++.+...-|.+-|++.+.|+.+.++ .+++.++
T Consensus 133 ~v~l~~~vD~IGG~ii~igd~v~D~--s~~l~~~ 164 (176)
T PRK08474 133 KIKLKQKKSDYDGIKVEVDDLGVEV--SFSKDRL 164 (176)
T ss_pred eEEEEEEEcCCCCEEEEECCEEEEe--eeeHHHH
Confidence 4555543233999999999999999 5666555
No 12
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=21.79 E-value=1.7e+02 Score=26.54 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHH
Q psy17045 110 LHQIQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQ 154 (211)
Q Consensus 110 LqQiq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~ 154 (211)
-.+|..|..|-+.|++-|+ |.|...-++.|.+.|+.|+
T Consensus 343 ~~~i~~aQK~aK~AiSAL~-------feDv~tA~~~L~~AL~lL~ 380 (380)
T PF04652_consen 343 PEQIAKAQKHAKFAISALN-------FEDVPTAIKELRKALELLG 380 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TT-HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccc-------cccccccccccccccccCC
Confidence 4579999999999999998 8888877888888777764
No 13
>PRK14640 hypothetical protein; Provisional
Probab=21.23 E-value=3.3e+02 Score=21.98 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=33.3
Q ss_pred CCceEEEEecCCCceehhHHHHHHHHHHHHHhccccCCCCc
Q psy17045 94 QTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVDDGY 134 (211)
Q Consensus 94 ~~~~~r~~i~~~~pw~LqQiq~~~n~l~~al~~l~~l~~~~ 134 (211)
+..++|..|+.+...-+.+...+.+.|..+|+..+.+...|
T Consensus 33 ~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y 73 (152)
T PRK14640 33 KHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEY 73 (152)
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCe
Confidence 35678988877667999999999999999999877665444
No 14
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=20.16 E-value=1.1e+02 Score=22.20 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=19.3
Q ss_pred hhhhhhchhhhhhhHHHHHHHHHHHHHH
Q psy17045 11 CLQKEFEWVINKEVHIILKQLQTILVEC 38 (211)
Q Consensus 11 ~l~~E~~WLl~~ev~~vl~~l~~~L~~c 38 (211)
.|++|++.|-+ +-.++..+.+.|+.+
T Consensus 2 aL~kEL~~Lr~--IN~~ie~~~~~L~~a 27 (78)
T PF08651_consen 2 ALEKELEQLRK--INPVIEGLIETLRSA 27 (78)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 57899999877 677777777766643
Done!