Query psy17045
Match_columns 211
No_of_seqs 91 out of 102
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:26:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rkl_A Vacuolar protein sortin 51.8 34 0.0011 22.5 5.1 37 111-154 15-51 (53)
2 3uwl_A TS, tsase, thymidylate 28.9 77 0.0026 27.7 5.3 23 185-207 196-218 (315)
3 1xkm_A Distinctin chain A; por 23.6 38 0.0013 18.6 1.4 19 22-40 3-21 (26)
4 2g8o_A TS, tsase, thymidylate 20.5 1.4E+02 0.0047 25.5 5.1 25 183-207 142-167 (264)
5 1hw4_A TS, thymidylate synthas 20.0 1.8E+02 0.0061 26.0 5.9 55 144-207 201-258 (355)
6 1tis_A Thymidylate synthase; t 19.2 1.6E+02 0.0055 25.4 5.3 25 183-207 152-177 (286)
7 2vfx_A Mitotic spindle assembl 19.0 2.2E+02 0.0075 22.9 5.9 26 136-161 119-144 (206)
8 1bkp_A Thymidylate synthase A; 18.4 1.6E+02 0.0053 25.3 5.0 23 185-207 159-181 (278)
9 1j3k_C Bifunctional dihydrofol 18.1 1.6E+02 0.0054 26.0 5.1 25 183-207 206-231 (328)
10 3iqc_A FLIS, flagellar protein 17.6 77 0.0026 24.0 2.6 43 113-155 52-94 (131)
No 1
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=51.84 E-value=34 Score=22.47 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHH
Q psy17045 111 HQIQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQ 154 (211)
Q Consensus 111 qQiq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~ 154 (211)
.||.+|..|-..|++-|+ |.|...-++.|+.-+..|+
T Consensus 15 ~~i~~AqK~aK~AiSAL~-------feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 15 SKIEQIQKLAKYAISALN-------YEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-------cccHHHHHHHHHHHHHHHh
Confidence 589999999999999998 7777777777777777765
No 2
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=28.88 E-value=77 Score=27.74 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.3
Q ss_pred CCCeEEEEEeecceeEEEEeecc
Q psy17045 185 PEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 185 P~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
|=...+.|||.+.+|.|.+||=|
T Consensus 196 PCh~~~qf~v~~~~L~~~lyqRS 218 (315)
T 3uwl_A 196 PCHTMFQFYVNEGKLSCQLYQRS 218 (315)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceEEEEEECCCeEEEEEEeeh
Confidence 56788999999999999999854
No 3
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.64 E-value=38 Score=18.63 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q psy17045 22 KEVHIILKQLQTILVECSR 40 (211)
Q Consensus 22 ~ev~~vl~~l~~~L~~c~~ 40 (211)
.|||+-+..|.+.|.+|--
T Consensus 3 revppgftaliktlrkcki 21 (26)
T 1xkm_A 3 REVPPGFTALIKTLRKCKI 21 (26)
T ss_dssp TCSCHHHHHHHHHHHHHHC
T ss_pred CcCCCcHHHHHHHHHhcee
Confidence 4899999999999999953
No 4
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=20.45 E-value=1.4e+02 Score=25.47 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=20.9
Q ss_pred CCCC-CeEEEEEeecceeEEEEeecc
Q psy17045 183 PLPE-DLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 183 ~LP~-dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
.||| ...+.|||.+.+|.|.+||=|
T Consensus 142 ~l~PC~~~~qF~V~~gkL~~~lyqRS 167 (264)
T 2g8o_A 142 ALAPCHAFFQFYVADGKLSCQLYQRS 167 (264)
T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCcceEEEEEEECCEEEEEEEhhh
Confidence 4544 589999999999999999854
No 5
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=19.96 E-value=1.8e+02 Score=25.97 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhccCCCC-CCccc-ccccCCCCCCCCCCCC-CeEEEEEeecceeEEEEeecc
Q psy17045 144 HTLDNILNCLQRGRTSLIVPRK-RTIDD-LMKSRNMKSLTPPLPE-DLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 144 ~~l~~ll~~L~~Ar~~L~~P~~-~~l~e-~~~s~~~~~F~P~LP~-dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
++|..+.+.|.. .|.. +.+.- ++-....+| .||| ...+.|||.+.+|.+.+||=|
T Consensus 201 DQi~~VI~~Lk~------nP~SRR~IvsaWNp~dl~~m---aLpPCh~~~QF~V~~gkLs~~lyQRS 258 (355)
T 1hw4_A 201 DQLQRVIDTIKT------NPDDRRIIMCAWNPRDLPLM---ALPPCHALCQFYVVNSELSCQLYQRS 258 (355)
T ss_dssp CHHHHHHHHHHH------CTTCSCCEEEECCGGGTTTS---SSCCCSEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHhc------CCCCceEEEEccChhhhhcC---CCCCceeEEEEEEeCCEEEEEEEehh
Confidence 456666666653 3543 22222 222222333 5655 589999999999999999854
No 6
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=19.18 E-value=1.6e+02 Score=25.38 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCCC-CeEEEEEeecceeEEEEeecc
Q psy17045 183 PLPE-DLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 183 ~LP~-dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
.||| ...+.|||.+.+|.|.+||=|
T Consensus 152 alpPCh~~~qF~V~~gkL~~~lyqRS 177 (286)
T 1tis_A 152 ALPPCHMFYQFNVRNGYLDLQWYQRS 177 (286)
T ss_dssp SSCCSEEEEEEEECSSEEEEEEEEEE
T ss_pred CCCCceEEEEEEEeCCEEEEEEEehh
Confidence 4544 589999999999999999854
No 7
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=18.98 E-value=2.2e+02 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhcc
Q psy17045 136 FKSSEEVLHTLDNILNCLQRGRTSLI 161 (211)
Q Consensus 136 f~~~~ev~~~l~~ll~~L~~Ar~~L~ 161 (211)
.++-.++-..|+.++..|..+-+.|-
T Consensus 119 ~~~~~ei~~eira~l~qi~~s~~~Lp 144 (206)
T 2vfx_A 119 EKSQKAIQDEIRSVIRQITATVTFLP 144 (206)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45678888999999999999887664
No 8
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=18.43 E-value=1.6e+02 Score=25.34 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCCeEEEEEeecceeEEEEeecc
Q psy17045 185 PEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 185 P~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
|=...+.|||.+.+|.|.+||=|
T Consensus 159 PC~~~~qF~V~~gkL~~~lyqRS 181 (278)
T 1bkp_A 159 PCVYETQWYVKHGKLHLEVRARS 181 (278)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEE
T ss_pred CeeEEEEEEEECCEEEEEEEhhh
Confidence 44589999999999999999854
No 9
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=18.09 E-value=1.6e+02 Score=25.99 Aligned_cols=25 Identities=40% Similarity=0.704 Sum_probs=21.0
Q ss_pred CCCC-CeEEEEEeecceeEEEEeecc
Q psy17045 183 PLPE-DLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 183 ~LP~-dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
.||| ...+.|||.+.+|.|.+||=|
T Consensus 206 aLpPCh~~~QF~V~~gkLs~~lyQRS 231 (328)
T 1j3k_C 206 ALPPCHILCQFYVFDGKLSCIMYQRS 231 (328)
T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCceeEEEEEEeCCEEEEEEEehh
Confidence 4555 588999999999999999854
No 10
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=17.56 E-value=77 Score=23.96 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHH
Q psy17045 113 IQDAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQR 155 (211)
Q Consensus 113 iq~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~ 155 (211)
+...+++|..|+++|..+.....+..|-|+-+.|..+...+.+
T Consensus 52 ~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~ 94 (131)
T 3iqc_A 52 IEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIK 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 5666777888888777665444454455666666666665553
Done!