Query psy17045
Match_columns 211
No_of_seqs 91 out of 102
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 20:27:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17045.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17045hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzma1 a.2.19.1 (A:456-501) F 30.8 14 0.00099 22.2 2.1 17 110-126 5-21 (46)
2 d1b5ea_ d.117.1.1 (A:) dCMP hy 25.7 40 0.0029 26.3 4.8 23 185-207 147-169 (241)
3 d1x9na2 b.40.4.6 (A:754-901) D 25.4 56 0.0041 22.8 5.3 39 70-117 88-144 (148)
4 d1vlfn1 b.3.5.1 (N:196-274) Tr 21.9 23 0.0017 22.7 2.2 20 67-87 5-24 (79)
5 d1bkpa_ d.117.1.1 (A:) Thymidy 21.8 55 0.004 26.0 5.0 23 185-207 159-181 (278)
6 d1tisa_ d.117.1.1 (A:) Thymidy 21.0 65 0.0048 25.5 5.3 23 185-207 155-177 (286)
7 d1pd3a_ a.30.3.1 (A:) Nonstruc 19.0 13 0.00095 22.5 0.3 17 6-22 4-20 (54)
8 d1zl8a1 a.194.1.1 (A:4-53) Lin 18.8 31 0.0023 20.7 2.1 37 116-152 2-48 (50)
9 d1orja_ a.24.19.1 (A:) Flagell 18.5 41 0.003 23.2 3.1 41 115-155 50-90 (126)
10 d2g8oa1 d.117.1.1 (A:1-264) Th 17.1 80 0.0058 24.8 5.0 22 186-207 146-167 (264)
No 1
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.78 E-value=14 Score=22.15 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHhc
Q psy17045 110 LHQIQDAGNHLQFALYH 126 (211)
Q Consensus 110 LqQiq~~~n~l~~al~~ 126 (211)
|+||.+++.||.+|-.-
T Consensus 5 lqQi~~ik~yI~QAk~a 21 (46)
T d1yzma1 5 LQQIHNITSFIRQAKAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 79999999999999654
No 2
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=25.69 E-value=40 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.0
Q ss_pred CCCeEEEEEeecceeEEEEeecc
Q psy17045 185 PEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 185 P~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
|=...+.|||.+.+|.+.+|+=|
T Consensus 147 PC~~~~qF~V~~gkL~~~~~qRS 169 (241)
T d1b5ea_ 147 MCTNTVQYLIRDKKINAVVNMRS 169 (241)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEE
T ss_pred ceeeEEEEEEcCCEEEEEEEeec
Confidence 45789999999999999999854
No 3
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.44 E-value=56 Score=22.84 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=26.8
Q ss_pred EEEeecCeeee--------------eEEEEEeeccCCCCCceEEEEecCCCce----ehhHHHHHH
Q psy17045 70 IVNLNGDSISF--------------ADIHLKIHRHHQHQTQTYKTSILKEHPW----KLHQIQDAG 117 (211)
Q Consensus 70 vvtr~G~~I~~--------------~di~lK~~~~~~~~~~~~r~~i~~~~pw----~LqQiq~~~ 117 (211)
|+...++-|+. .-++||+|++ .| +++|+.| .+++|+...
T Consensus 88 V~Ev~~~~it~s~~~~~~~~~~~~~~g~sLRfPr~-------~r--iR~DK~~~e~~t~~~l~~l~ 144 (148)
T d1x9na2 88 VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRF-------IR--VREDKQPEQATTSAQVACLY 144 (148)
T ss_dssp EEEEEESEEEEESSCCTTTTTSCSSCEEEEESCEE-------EE--ECTTCCGGGSCBHHHHHHHH
T ss_pred EEEEEeeeeeeccceeeccccccCCCceEEEcCEE-------EE--EeCCCChHHCcCHHHHHHHH
Confidence 66666666664 2468999988 14 8899988 666666543
No 4
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=21.94 E-value=23 Score=22.71 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=15.7
Q ss_pred eeEEEEeecCeeeeeEEEEEe
Q psy17045 67 LKTIVNLNGDSISFADIHLKI 87 (211)
Q Consensus 67 vKGvvtr~G~~I~~~di~lK~ 87 (211)
++|++ ++|+.|-.|.|.|+-
T Consensus 5 ~~gi~-~~G~~v~gA~V~L~~ 24 (79)
T d1vlfn1 5 TAGIL-VQGDCFEGAKVVLKS 24 (79)
T ss_dssp EEEEE-ETTEECTTCEEEEEE
T ss_pred EeeEE-ECCccccccEEEEEC
Confidence 67855 689999999988864
No 5
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]}
Probab=21.77 E-value=55 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCCeEEEEEeecceeEEEEeecc
Q psy17045 185 PEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 185 P~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
|=...+.|||.+.+|.+.+|+=|
T Consensus 159 PC~~~~qF~v~~g~L~~~~~qRS 181 (278)
T d1bkpa_ 159 PCVYETQWYVKHGKLHLEVRARS 181 (278)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEE
T ss_pred hceeeEEEEecCCCcEEEEEeeh
Confidence 34788999999999999999854
No 6
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]}
Probab=21.01 E-value=65 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCCeEEEEEeecceeEEEEeecc
Q psy17045 185 PEDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 185 P~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
|=...+.|||.+.+|.+.+|+=|
T Consensus 155 PC~~~~qf~v~~~~L~~~~~qRS 177 (286)
T d1tisa_ 155 PCHMFYQFNVRNGYLDLQWYQRS 177 (286)
T ss_dssp CSEEEEEEEECSSEEEEEEEEEE
T ss_pred ccchhhhhhccccceEEEEeecc
Confidence 56799999999999999999854
No 7
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=19.04 E-value=13 Score=22.53 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=11.8
Q ss_pred HHHHHhhhhhhchhhhh
Q psy17045 6 KEEALCLQKEFEWVINK 22 (211)
Q Consensus 6 ~ee~~~l~~E~~WLl~~ 22 (211)
||+.+.-=.|..||+.+
T Consensus 4 reqlsqkfeeirwliee 20 (54)
T d1pd3a_ 4 REQLGQKFEEIRWLIEE 20 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666788888873
No 8
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.82 E-value=31 Score=20.74 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccccCCCCccccch----------HHHHHHHHHHHHH
Q psy17045 116 AGNHLQFALYHIDNVDDGYQFKSS----------EEVLHTLDNILNC 152 (211)
Q Consensus 116 ~~n~l~~al~~l~~l~~~~~f~~~----------~ev~~~l~~ll~~ 152 (211)
..+-++.|+.+|+.++.+-..... .+|++.++++.++
T Consensus 2 L~rDv~RaieLle~Lq~sgevp~~KL~aLqkVLqSdF~~avREVYe~ 48 (50)
T d1zl8a1 2 LERDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREVYET 48 (50)
T ss_dssp HHHHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688899998877643222221 2345566666554
No 9
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=18.52 E-value=41 Score=23.21 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccccCCCCccccchHHHHHHHHHHHHHHHH
Q psy17045 115 DAGNHLQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQR 155 (211)
Q Consensus 115 ~~~n~l~~al~~l~~l~~~~~f~~~~ev~~~l~~ll~~L~~ 155 (211)
...+++..|+++|..+.....|..|-++-..|..+...+.+
T Consensus 50 ~~~~~l~ka~~Ii~~L~~~Ld~e~GgeiA~nL~~lY~~~~~ 90 (126)
T d1orja_ 50 EFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILN 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 34567888888887776666677777888888888887754
No 10
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=17.12 E-value=80 Score=24.77 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred CCeEEEEEeecceeEEEEeecc
Q psy17045 186 EDLAISFYIQSHKLICAAYQLS 207 (211)
Q Consensus 186 ~dl~v~fyI~~~~Lv~~~y~l~ 207 (211)
=...+.|||.+.+|.+.+|+=|
T Consensus 146 C~~~~qf~v~~~~L~~~~~qRS 167 (264)
T d2g8oa1 146 CHAFFQFYVADGKLSCQLYQRS 167 (264)
T ss_dssp SEEEEEEEEETTEEEEEEEEEE
T ss_pred cceeeEEEEcCCCcEEEEEEch
Confidence 4689999999999999999854
Done!