RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17045
         (211 letters)



>gnl|CDD|220658 pfam10259, Rogdi_lz, Rogdi leucine zipper containing protein.  This
           is a family of conserved proteins which have been
           suggested as containing leucine-zipper domains. A
           leucine zipper domain is a region of 30 amino acids with
           leucines repeating every seven or eight residues; these
           proteins do have many such leucines. The protein in
           Drosophila comes from the gene ROGDI.
          Length = 274

 Score =  153 bits (389), Expect = 3e-46
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 15  EFEWVINKEVHIILKQLQTILVECSRRFPLTLFGNEGPYKSDKIILASS-QDTLKTIVNL 73
           E EW++ + V   L QL   L ECS                 K+ L+S   +++K IV  
Sbjct: 1   ELEWLLEEIVKPELPQLIEGLEECSALLAP-------SGPGFKLPLSSGRSESVKGIVTR 53

Query: 74  NGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVDDG 133
            G  I+  D+ LK+ R ++         +  + PWKL QIQDA NHL  AL  +DN+   
Sbjct: 54  QGTYITQFDVQLKLPRFNK---GQLTFKMNPDKPWKLQQIQDARNHLNQALDLLDNLQSS 110

Query: 134 Y----QFKSSEEVLHTLDNILNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTPPLPEDLA 189
           Y     F ++  +L  L  +L  LQ  R SL  P    + + +      S  PPLP DL+
Sbjct: 111 YDPLEFFATAAFLLEQLRLLLLTLQEARNSLQFPSDNNLWEPLMFDPSTSFCPPLPPDLS 170

Query: 190 ISFYIQSHKLICAAYQLSNVQ 210
           +  YI  ++L      L  V 
Sbjct: 171 VDLYISKNELCLDLRNLHKVT 191


>gnl|CDD|216647 pfam01682, DB, DB module.  This domain has no known function. It is
           found in several C. elegans proteins. The domain
           contains 12 conserved cysteines that probably form six
           disulphide bridges. This domain is found associated with
           ig pfam00047 and fn3 pfam00041 domains, as well as in
           some lipases pfam00657.
          Length = 96

 Score = 27.5 bits (61), Expect = 1.9
 Identities = 9/38 (23%), Positives = 11/38 (28%)

Query: 120 LQFALYHIDNVDDGYQFKSSEEVLHTLDNILNCLQRGR 157
           LQ   +   N      F        T+  I  C   GR
Sbjct: 12  LQLCSFDTINSLSRLAFLPPCCPKATVPKIWRCAADGR 49


>gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional.
          Length = 456

 Score = 26.8 bits (59), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 150 LNCLQRGRTSLIVPRKRTIDDLMKSRNMKSLTP 182
           ++  +RGR   I  R   +D L    N+K+LTP
Sbjct: 138 VDETKRGRYQQINLRDAYVDHLFGYINVKNLTP 170


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,421,938
Number of extensions: 946027
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 14
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)