RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17045
         (211 letters)



>d1qwoa_ c.60.1.2 (A:) Phytase
           (myo-inositol-hexakisphosphate-3-phosphohydrolase)
           {Aspergillus fumigatus [TaxId: 5085]}
          Length = 435

 Score = 27.5 bits (60), Expect = 1.1
 Identities = 14/123 (11%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 24  VHIILKQLQTILVECSRRFPLTLFGNEGPYKSD-KIILASSQDTLKTIVNLNGDSISFAD 82
            + ++ +L    V+       TL  N   +  +  + +  S D   ++V++         
Sbjct: 289 TNELIARLTRSPVQDHTSTNSTLVSNPATFPLNATMYVDFSHDN--SMVSIFF------- 339

Query: 83  IHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQFALYHIDNVDDGY-QFKSSEE 141
             L ++   +  ++T   S  +   +    +   G    F      +  +   +   ++ 
Sbjct: 340 -ALGLYNGTEPLSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEKEPLVRALINDR 398

Query: 142 VLH 144
           V+ 
Sbjct: 399 VVP 401


>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 105

 Score = 24.3 bits (52), Expect = 7.7
 Identities = 8/81 (9%), Positives = 23/81 (28%)

Query: 62  SSQDTLKTIVNLNGDSISFADIHLKIHRHHQHQTQTYKTSILKEHPWKLHQIQDAGNHLQ 121
            S+   +  ++  GD +   D         +     + +   K       ++        
Sbjct: 6   ESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV 65

Query: 122 FALYHIDNVDDGYQFKSSEEV 142
            +   +  +     FK  ++V
Sbjct: 66  ASECEVKCMPTFQFFKKGQKV 86


>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha
           subunit {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 23.1 bits (50), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 149 ILNCLQR-GRTSLIVPRKRTIDDLMKSRNM--KSLT 181
             NCL+      +    +RT  +L+K+ N+  KSLT
Sbjct: 17  SANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,488
Number of extensions: 33173
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 12
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)