BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17048
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q556K9|DPM2_DICDI Dolichol phosphate-mannose biosynthesis regulatory protein
OS=Dictyostelium discoideum GN=dpm2-1 PE=3 SV=1
Length = 79
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 3 EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALIIPCALI 59
D IG +++ F F YYT WV TPFI D I+ YF P +Y +IIP L+
Sbjct: 4 SDKFIGFVMVLFRIFVFGYYTTWVIITPFIVSDHW---IQQYFLPREYGIIIPLVLL 57
>sp|Q2KIN1|DPM2_BOVIN Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos
taurus GN=DPM2 PE=3 SV=3
Length = 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALIIPCA 57
D +G ++A + I F YYT WV PFI+ I YF P YA+ IP A
Sbjct: 6 DQVVGLGLVALSLIIFTYYTAWVILLPFIDSQHV---IHKYFLPRAYAIAIPLA 56
>sp|Q9Z1P1|DPM2_CRIGR Dolichol phosphate-mannose biosynthesis regulatory protein
OS=Cricetulus griseus GN=DPM2 PE=3 SV=3
Length = 84
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALIIPCA 57
D +G ++A + I F YYT WV PFI+ I YF P YA++IP A
Sbjct: 6 DQVVGFGLVAVSLIIFTYYTTWVILLPFIDSQHV---IHKYFLPRAYAVLIPLA 56
>sp|O94777|DPM2_HUMAN Dolichol phosphate-mannose biosynthesis regulatory protein
OS=Homo sapiens GN=DPM2 PE=1 SV=3
Length = 84
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALIIP 55
D +G ++A + I F YYT WV PFI+ I YF P YA+ IP
Sbjct: 6 DQVVGLGLVAVSLIIFTYYTAWVILLPFIDSQHV---IHKYFLPRAYAVAIP 54
>sp|Q9Z324|DPM2_MOUSE Dolichol phosphate-mannose biosynthesis regulatory protein OS=Mus
musculus GN=Dpm2 PE=2 SV=3
Length = 84
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYA 51
D +G ++A + I F YYT WV PFI+ I YF P YA
Sbjct: 6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHV---IHKYFLPRAYA 50
>sp|Q9Z325|DPM2_RAT Dolichol phosphate-mannose biosynthesis regulatory protein
OS=Rattus norvegicus GN=Dpm2 PE=3 SV=3
Length = 84
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 4 DSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYA 51
D +G ++A + I F YYT WV PFI+ I YF P YA
Sbjct: 6 DQAVGFGLVAVSLIIFTYYTTWVILLPFIDSQHV---IHKYFLPRAYA 50
>sp|Q8CWM0|MNMA_THEEB tRNA-specific 2-thiouridylase MnmA OS=Thermosynechococcus elongatus
(strain BP-1) GN=mnmA PE=3 SV=1
Length = 369
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 18 CFLYYTLWVFATPFIEPDTAILDIRYYFPPIQYALI 53
C + WV P EP TA + IRY PP+ +I
Sbjct: 277 CTVARVNWVSIPPPKEPMTATVQIRYRTPPVPVTII 312
>sp|Q9M9W8|PLDP2_ARATH Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2
Length = 1046
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 61 GLIGCLYAFTCTFYITAYTKIWCEHHTTFLILLNDAYLSVLL 102
G+ CL F+ T++TK+W FL LL D + LL
Sbjct: 235 GVRCCLPTHCLGFFGTSWTKVWAVLKPGFLALLEDPFSGKLL 276
>sp|Q9USW6|DPM2_SCHPO Dolichol phosphate-mannose biosynthesis regulatory protein
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dpm2 PE=3 SV=1
Length = 72
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 10 LILAFTCICFLYYTLWVFATPFIEPDTAILDI-RYYFPPIQYALIIPCALI 59
+I+ + FLYYT+WV PF++ ++I + F ++A+ IP A++
Sbjct: 1 MIVYISTAAFLYYTIWVLIMPFVDN----MNISQKLFLDREWAITIPVAVM 47
>sp|Q61826|MADCA_MOUSE Mucosal addressin cell adhesion molecule 1 OS=Mus musculus
GN=Madcam1 PE=1 SV=2
Length = 405
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 IGKLILAFTCICFLYYTLWVFATPFIEPDTA 37
IG L+L + FL Y LW P PDT+
Sbjct: 370 IGSLVLGLLALVFLAYRLWKCYRPGPRPDTS 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.335 0.149 0.509
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,076,139
Number of Sequences: 539616
Number of extensions: 1368416
Number of successful extensions: 4004
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3981
Number of HSP's gapped (non-prelim): 25
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)