Query psy17048
Match_columns 103
No_of_seqs 100 out of 122
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:30:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 48.9 10 0.00035 24.5 2.2 29 46-74 7-35 (79)
2 2k9j_B Integrin beta-3; transm 32.8 51 0.0018 19.0 3.3 26 46-71 6-31 (43)
3 2rdd_B UPF0092 membrane protei 26.1 20 0.00068 19.9 0.6 15 72-86 18-32 (37)
4 2lk9_A Bone marrow stromal ant 23.5 67 0.0023 18.4 2.6 15 66-80 20-34 (35)
5 2lat_A Dolichyl-diphosphooligo 16.6 1.5E+02 0.0053 16.9 3.1 27 56-82 9-35 (37)
6 1vf5_B Subunit IV; photosynthe 14.0 1E+02 0.0035 22.1 2.3 30 3-39 92-121 (160)
7 1rkl_A Dolichyl-diphosphooligo 13.6 2.1E+02 0.007 16.3 3.4 25 58-82 11-35 (36)
8 1u19_A Rhodopsin; G protein-co 12.1 3.6E+02 0.012 18.5 4.6 33 48-80 36-68 (349)
9 2h3o_A MERF; membrane protein, 11.2 1.2E+02 0.004 19.2 1.6 19 55-73 14-32 (61)
10 3rko_M NADH-quinone oxidoreduc 9.6 7E+02 0.024 20.1 6.2 51 13-63 426-478 (509)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.88 E-value=10 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=20.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17048 46 PPIQYALIIPCALISGLIGCLYAFTCTFY 74 (103)
Q Consensus 46 pPr~yAi~lP~~lllv~l~~vg~Fig~~l 74 (103)
||.-++|.+.++.++++++.+...+--++
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999988887776655544333
No 2
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=32.79 E-value=51 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=17.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHh
Q psy17048 46 PPIQYALIIPCALISGLIGCLYAFTC 71 (103)
Q Consensus 46 pPr~yAi~lP~~lllv~l~~vg~Fig 71 (103)
||.-+||..-++.+++++|.+...+-
T Consensus 6 ~~n~~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 6 GPDILVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEeehHHHHHHHHHHHHHHHHHHH
Confidence 46778888888877776665544433
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.08 E-value=20 Score=19.90 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=10.8
Q ss_pred hhhhhcCCccceecc
Q psy17048 72 TFYITAYTKIWCEHH 86 (103)
Q Consensus 72 ~~lI~~~~k~~~~~~ 86 (103)
.++||+++|..-||.
T Consensus 18 Fl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 18 FMILRPQQKRTKEHK 32 (37)
T ss_dssp HHTHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHH
Confidence 567899888766553
No 4
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=23.48 E-value=67 Score=18.43 Aligned_cols=15 Identities=27% Similarity=0.076 Sum_probs=6.2
Q ss_pred HHHHHhhhhhhcCCc
Q psy17048 66 LYAFTCTFYITAYTK 80 (103)
Q Consensus 66 vg~Fig~~lI~~~~k 80 (103)
+|..+-+..+++|.|
T Consensus 20 LgV~LI~f~~kAnsk 34 (35)
T 2lk9_A 20 LGVPLIIFTIKKKKK 34 (35)
T ss_dssp HHHHHHHHC------
T ss_pred hcchheEEeeecccC
Confidence 666666777777655
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=16.64 E-value=1.5e+02 Score=16.88 Aligned_cols=27 Identities=4% Similarity=-0.166 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCccc
Q psy17048 56 CALISGLIGCLYAFTCTFYITAYTKIW 82 (103)
Q Consensus 56 ~~lllv~l~~vg~Fig~~lI~~~~k~~ 82 (103)
.++...|++....-+.||.+.++.|..
T Consensus 9 ~lan~lG~~~~~LIVlYH~v~~n~~~~ 35 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLYHYVAVNNPKK 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 345556777777778899999877654
No 6
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=13.97 E-value=1e+02 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Q psy17048 3 EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAIL 39 (103)
Q Consensus 3 ~Dr~vG~~lL~~~~~iF~YYtvWv~vlPFvd~D~~i~ 39 (103)
.||+-|.+.+..+..+. +++||+|..++.+
T Consensus 92 PnKlgGVial~~siliL-------~~lP~ld~~~~~r 121 (160)
T 1vf5_B 92 PNKLLGVLLMASVPLGL-------ILVPFIENVNKFQ 121 (160)
T ss_dssp CSTTHHHHHHHHHHHHH-------HTHHHHSCSCSSS
T ss_pred chhhHhHHHHHHHHHHH-------HHHHHhcccCCCC
Confidence 46777877765554432 3799998544444
No 7
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=13.60 E-value=2.1e+02 Score=16.26 Aligned_cols=25 Identities=8% Similarity=-0.189 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCccc
Q psy17048 58 LISGLIGCLYAFTCTFYITAYTKIW 82 (103)
Q Consensus 58 lllv~l~~vg~Fig~~lI~~~~k~~ 82 (103)
.-..|++....-+.||.+.++..+|
T Consensus 11 an~lG~~~~~LIvlYH~v~~n~~~k 35 (36)
T 1rkl_A 11 AITFGIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Confidence 4445666666678899998876554
No 8
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=12.10 E-value=3.6e+02 Score=18.50 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q psy17048 48 IQYALIIPCALISGLIGCLYAFTCTFYITAYTK 80 (103)
Q Consensus 48 r~yAi~lP~~lllv~l~~vg~Fig~~lI~~~~k 80 (103)
.++.+..-....+..+|.+|=.+-...+..+++
T Consensus 36 ~~~~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~ 68 (349)
T 1u19_A 36 WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKK 68 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHheEeehhhhhh
Confidence 334444444455556666666555555444443
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=11.16 E-value=1.2e+02 Score=19.18 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy17048 55 PCALISGLIGCLYAFTCTF 73 (103)
Q Consensus 55 P~~lllv~l~~vg~Fig~~ 73 (103)
|++..+.|..++++..|++
T Consensus 14 PvLvil~G~~Glsa~~~wL 32 (61)
T 2h3o_A 14 PVLVILLGVVGLSALTGYL 32 (61)
T ss_dssp --CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 6666666666666655543
No 10
>3rko_M NADH-quinone oxidoreductase subunit M; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=9.56 E-value=7e+02 Score=20.14 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhcccccCCccc--cccccccCChhhHHHHHHHHHHHHH
Q psy17048 13 AFTCICFLYYTLWVFATPFIEPDTAI--LDIRYYFPPIQYALIIPCALISGLI 63 (103)
Q Consensus 13 ~~~~~iF~YYtvWv~vlPFvd~D~~i--~~~~~lFpPr~yAi~lP~~lllv~l 63 (103)
.++.++-.+|.++.+..-|..+...- ..-.+--++||+....+..++.+.+
T Consensus 426 ~~~~~ls~~y~lr~~~~~f~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 478 (509)
T 3rko_M 426 TFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLL 478 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCSSTTCSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34555667788888777777653221 1000123456665554444444333
Done!