Query psy17048
Match_columns 103
No_of_seqs 100 out of 122
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 20:30:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 41.9 16 0.0012 24.0 4.2 39 44-82 31-69 (348)
2 d1q90d_ f.32.1.1 (D:) Subunit 29.1 54 0.0039 21.8 5.3 30 3-39 89-118 (156)
3 d1ppjc1 f.32.1.1 (C:261-379) M 25.1 41 0.003 21.4 3.9 28 3-37 25-52 (119)
4 d3cx5c1 f.32.1.1 (C:262-385) M 23.4 57 0.0041 20.7 4.4 28 3-37 25-52 (124)
5 d2onkc1 f.58.1.1 (C:1-252) Mol 8.3 2.5E+02 0.018 17.7 4.8 28 12-39 12-40 (252)
6 d1pv7a_ f.38.1.2 (A:) Lactose 7.2 1.6E+02 0.011 18.2 2.8 23 61-83 386-408 (417)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 6.8 1.3E+02 0.0093 15.9 1.9 10 52-61 15-24 (36)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 6.2 2.1E+02 0.015 16.4 2.9 31 43-73 59-89 (103)
9 d1jy1a1 d.136.1.3 (A:145-350) 6.2 74 0.0054 21.8 0.8 22 81-102 114-135 (206)
10 d2h6ma1 b.47.1.4 (A:1-212) 3C 6.0 1.1E+02 0.0081 20.0 1.6 13 37-49 95-107 (212)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=41.86 E-value=16 Score=24.00 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=25.1
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q psy17048 44 YFPPIQYALIIPCALISGLIGCLYAFTCTFYITAYTKIW 82 (103)
Q Consensus 44 lFpPr~yAi~lP~~lllv~l~~vg~Fig~~lI~~~~k~~ 82 (103)
+=||-+|++..-...++..+|.+|=.+-...+..+||.+
T Consensus 31 ~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr 69 (348)
T d1u19a_ 31 LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLR 69 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCC
Confidence 445667877776666667777777766655555555543
No 2
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=29.06 E-value=54 Score=21.82 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccc
Q psy17048 3 EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTAIL 39 (103)
Q Consensus 3 ~Dr~vG~~lL~~~~~iF~YYtvWv~vlPFvd~D~~i~ 39 (103)
.+|+.|..+.+.+... .+++||+|..++.+
T Consensus 89 P~kl~GVi~~~~~i~~-------L~~lP~l~~~~~~~ 118 (156)
T d1q90d_ 89 PNKLLGVLLMAAVPAG-------LITVPFIESINKFQ 118 (156)
T ss_dssp SCHHHHHHHHHHHHHH-------HTTTTTTTCSCCCC
T ss_pred ChHHHHHHHHHHHHHH-------HHHHHHHccccccc
Confidence 3567776666554433 34789999766544
No 3
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.12 E-value=41 Score=21.38 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q psy17048 3 EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTA 37 (103)
Q Consensus 3 ~Dr~vG~~lL~~~~~iF~YYtvWv~vlPFvd~D~~ 37 (103)
.||+-|.+.++.|.+++ +.+|+.|....
T Consensus 25 pnK~gGvl~m~~si~il-------~~lP~l~~~~~ 52 (119)
T d1ppjc1 25 PNKLGGVLALAFSILIL-------ALIPLLHTSKQ 52 (119)
T ss_dssp SSHHHHHHHHHHHHHGG-------GTHHHHCCCSS
T ss_pred CchhHHHHHHHHHHHHH-------HHHHHHhcccC
Confidence 57888888877776553 37899987653
No 4
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.39 E-value=57 Score=20.67 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Q psy17048 3 EDSTIGKLILAFTCICFLYYTLWVFATPFIEPDTA 37 (103)
Q Consensus 3 ~Dr~vG~~lL~~~~~iF~YYtvWv~vlPFvd~D~~ 37 (103)
.||..|.+.++.|..++ .++|+.|....
T Consensus 25 P~k~~Gvl~~~~si~il-------~~lP~l~~s~~ 52 (124)
T d3cx5c1 25 PDKLLGVITMFAAILVL-------LVLPFTDRSVV 52 (124)
T ss_dssp SSHHHHHHHHHHHHHGG-------GGHHHHCCCSS
T ss_pred CcchhhhHHHHHHHHHH-------HHHHHHhhhhh
Confidence 57888888887776543 37999998774
No 5
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.34 E-value=2.5e+02 Score=17.73 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHh-hcccccCCcccc
Q psy17048 12 LAFTCICFLYYTLWVF-ATPFIEPDTAIL 39 (103)
Q Consensus 12 L~~~~~iF~YYtvWv~-vlPFvd~D~~i~ 39 (103)
+.....+|.++-++.. ...|++.|+..+
T Consensus 12 ~~~~~~~f~~~p~~~~~~~s~~~~~n~~~ 40 (252)
T d2onkc1 12 LSSIILLFVLLPVAATVTLQLFNFDEFLK 40 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3444566677766554 445666565433
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.18 E-value=1.6e+02 Score=18.18 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhhhcCCccce
Q psy17048 61 GLIGCLYAFTCTFYITAYTKIWC 83 (103)
Q Consensus 61 v~l~~vg~Fig~~lI~~~~k~~~ 83 (103)
.+++.+++.+...+++..++..-
T Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 386 GLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhcCCCccch
Confidence 33444555556666665544433
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.82 E-value=1.3e+02 Score=15.91 Aligned_cols=10 Identities=10% Similarity=0.467 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q psy17048 52 LIIPCALISG 61 (103)
Q Consensus 52 i~lP~~lllv 61 (103)
|++|..++++
T Consensus 15 ilvPt~FLli 24 (36)
T d2axtm1 15 VLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.15 E-value=2.1e+02 Score=16.42 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=20.4
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17048 43 YYFPPIQYALIIPCALISGLIGCLYAFTCTF 73 (103)
Q Consensus 43 ~lFpPr~yAi~lP~~lllv~l~~vg~Fig~~ 73 (103)
+.-|-...+=.+-++..+.|+..++.+++.+
T Consensus 59 Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i 89 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMVAGITSFGLVTAAL 89 (103)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567666666666677777777777666643
No 9
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.15 E-value=74 Score=21.83 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=17.7
Q ss_pred cceecceeeEEeeecccccccC
Q psy17048 81 IWCEHHTTFLILLNDAYLSVLL 102 (103)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (103)
+.--||+...|+..+.++.|..
T Consensus 114 ~fGtHHSKmmiL~y~d~lRVVI 135 (206)
T d1jy1a1 114 AFGTHHTKMMLLLYEEGLRVVI 135 (206)
T ss_dssp TTCCBCCCEEEEEESSCEEEEE
T ss_pred CcCCCcceeEEEEcCCceEEEE
Confidence 3466999999999988887754
No 10
>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]}
Probab=6.00 E-value=1.1e+02 Score=19.96 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=10.0
Q ss_pred cccccccccCChh
Q psy17048 37 AILDIRYYFPPIQ 49 (103)
Q Consensus 37 ~i~~~~~lFpPr~ 49 (103)
+.+||+++||+++
T Consensus 95 ~frDI~k~f~~~~ 107 (212)
T d2h6ma1 95 KFRDITQHFIKKG 107 (212)
T ss_dssp CBCCCGGGBCCGG
T ss_pred CcCccccccCcch
Confidence 4468999999765
Done!